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Author SHA1 Message Date
Ray Speth
f5b2fc37df [Python] Use name 'pre_exponential_factor' consistently 2015-05-11 16:16:44 -04:00
Ray Speth
9e9f03288a [Kinetics] Implement modifyReaction for InterfaceKinetics 2015-05-08 11:07:41 -04:00
Ray Speth
35e5e93c6e [Kinetics] Implement modifyReaction for AqueousKinetics 2015-05-08 11:07:11 -04:00
Ray Speth
cb88a2b1e0 Remove declarations for undefined methods from InterfaceKinetics 2015-05-07 23:09:01 -04:00
Ray Speth
62cd325036 [Kinetics] Implement modifyReaction for gas-phase reactions 2015-05-07 18:31:40 -04:00
Ray Speth
a3ec8c0848 [Doc] Use https for MathJax CDN 
This is needed to make MathJax work when loading the documentation over an https
URL, since some browsers block scripts from non-https sites when loading a page
over https.
 2015-05-07 11:29:22 -04:00
Ray Speth
11f4b1b7f7 [Doc] CTI to XML conversion does not generate new files 2015-05-06 21:15:02 -04:00
Ray Speth
14b41ea338 [Python/Doc] Update docs for Solution and Interface 2015-05-06 21:15:02 -04:00
Ray Speth
c214d912e5 [Doc] Add labels to enable linking to Python/Matlab examples 
The labels are "py-example-scriptname.py" and "matlab-example-scriptname.m",
respectively.
 2015-05-06 21:15:02 -04:00
Ray Speth
d470486bee [Python] Reactants and products can be specified in Reaction constructor 2015-05-06 21:15:01 -04:00
Ray Speth
9824edcb86 [Python] Update docs for Species and Reaction 2015-05-06 21:15:01 -04:00
Ray Speth
646654b7d0 [Python] Fix declarations of some methods which can throw exceptions 2015-05-06 21:15:01 -04:00
Ray Speth
658ce5d73b [Python] Return 'None' if thermo or transport are undefined 2015-05-06 21:15:00 -04:00
Ray Speth
a4252480aa [Python] Add setter for Species.transport 2015-05-06 21:15:00 -04:00
Ray Speth
00ed585f18 [Python] Adding example demonstrating submechanism extraction 2015-05-06 21:14:59 -04:00
Ray Speth
092937fd06 [Kinetics] Fix handling of undeclared third bodies in Falloff reactions 2015-05-06 21:14:59 -04:00
Ray Speth
08f0fb5bf6 [1D/Examples] Use np.genfromtxt in fixed-T flame example 2015-05-06 21:14:59 -04:00
Ray Speth
27726c3072 [Python/1D] Use initial gas composition as state of flame inlet 
This eliminates the need to set the inlet temperature and composition explicitly
for configurations where only one composition needs to be specified (i.e. all
premixed configurations).
 2015-05-06 21:14:58 -04:00
Ray Speth
14b2e8f5cf [Kinetics] Fix 'skip_undeclared_species' behavior 2015-05-06 21:14:58 -04:00
Ray Speth
982846acf7 [Python] Add mechanism reduction example using Species and Reactions 2015-05-05 15:02:57 -04:00
Ray Speth
d8ed6135ea [Python] Skip undeclared third bodies when adding Reactions 
This needs to be the default behavior, since reactions can currently only be
added from the constructor.
 2015-05-05 13:47:50 -04:00
Ray Speth
26c0c3f587 [Doc] Update docs for GasTransportData 2015-05-05 11:44:34 -04:00
Ray Speth
d68c41197e [Python/Doc] Document GasTransportData 2015-05-05 11:34:07 -04:00
Ray Speth
18e2ab7c8d [Python/Doc] Document Reaction and derived classes 2015-05-05 11:34:07 -04:00
Ray Speth
fe0c864f45 [Doc] Fix missing separator before static/class methods in Sphinx docs 2015-05-05 11:00:25 -04:00
Ray Speth
ce15158bf9 [Doc] Fix CSS used for method names in Sphinx docs 
This appears to be necessary for Sphinx >= 1.3.0
 2015-05-05 11:00:25 -04:00
Ray Speth
dd62e6061e [Python] Add setters for InterfaceReaction properties 2015-05-05 11:00:25 -04:00
Ray Speth
4022e408af [Doc] Document interface reaction coverage dependencies 
Specifically, that the activation energy term is given in temperature
units.
 2015-05-05 11:00:25 -04:00
Ray Speth
be2d08f7c2 Remove a leftover debugging print statement 2015-05-05 11:00:25 -04:00
Ray Speth
4ea96b810d [Python] Document Species, SpeciesThermo, and derived classes 2015-05-05 11:00:25 -04:00
Ray Speth
9af5d5835a [Python] Handle 'charge' and 'size' arguments to class Species 2015-05-05 11:00:25 -04:00
Ray Speth
56195cc67d [Python] Fix a typo in the name of class 'CoverageDependency' 2015-05-05 11:00:25 -04:00
Ray Speth
184bff328d [Python] Add ability to get/set species transport data 2015-05-05 11:00:25 -04:00
Ray Speth
fd659c09ea [1D] Fix saving multiple flame profiles to a single XML file 
Broken by the change in b0e5b13913. Modify the save_restore test
to cover this case.
 2015-05-02 21:24:51 -04:00
Ray Speth
decf251a8b Improve error messages generated by XML_NoChild and XML_TagMismatch 2015-05-02 20:07:46 -04:00
Ray Speth
c1fda5ca3c [Python] Wall coverages can be set using a dict or string 2015-05-02 20:07:46 -04:00
Ray Speth
0562f18100 [Reactor] Wall coverages may be set using a compositionMap or string 2015-05-02 20:07:45 -04:00
Ray Speth
31491c82cc [Python] Interface.coverages can be set using a string or dict 2015-05-02 20:07:45 -04:00
Ray Speth
522c563810 [Thermo] Surface coverages can be set using a compositionMap 2015-05-02 20:07:44 -04:00
Ray Speth
9e4e73da90 [Python] Convert both dicts and strings to compositionMap 2015-05-02 20:07:44 -04:00
Ray Speth
f4715c671f [Python] Add method for setting Chebyshev rate coefficient parameters 2015-05-02 20:07:36 -04:00
Ray Speth
7a21855574 [Kinetics] Switch parameter order in ChebyshevRate constructor 
The usual order of arguments is temperature then pressure.
 2015-04-30 22:34:25 -04:00
Ray Speth
6458b0c50d [Python] Enable direct construction of PlogReaction 2015-04-30 22:32:11 -04:00
Ray Speth
2fff28f37c [Kinetics] Fix Plog::rates to suppress all artificial rates 2015-04-30 19:24:16 -04:00
Ray Speth
a6038b32f6 [Python] Add functions for constructing falloff / chemact reactions 2015-04-29 22:48:44 -04:00
Ray Speth
6648b9ec34 [Kinetics] Falloff initialization checks for correct number of parameters 2015-04-29 22:12:00 -04:00
Ray Speth
0a2b4816ef [Python] Add setters for constructing elementary and third-body reactions 
This allows creating reactions of these types without needing an XML or
CTI input file.
 2015-04-29 19:35:13 -04:00
Ray Speth
498f53c350 [Python] Allow direct creation of derived-type Reaction objects 2015-04-29 19:32:35 -04:00
Ray Speth
c371751f65 Remove obsolete references to Subversion 2015-04-29 18:06:40 -04:00
Ray Speth
c1304e9ee6 Add support for Sundials 2.6 
Resolves #256.
 2015-04-29 18:03:17 -04:00