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Author SHA1 Message Date
Ray Speth
d7c939e60c [Cython/Doc] Migration guide covers transport model and Soret effect 2013-11-03 21:06:54 +00:00
Ray Speth
6d7ec8df43 [Matlab] Fix 'thermalConductivity' method 2013-11-03 20:46:38 +00:00
Ray Speth
8b435f6dcb [SCons] Fix a problem with Cantera.mak and user-provided BLAS/LAPACK 
All cases need to define the mak_blas_lapack_libs_dep variable that
was introduced in r2535.
 2013-10-21 01:55:47 +00:00
Ray Speth
e1074722c5 [SCons] Restore 'single_library' build option 
The 'single_library=y' build option must be retained in order to support
compilation on Windows and OS X.
 2013-10-04 16:22:55 +00:00
Ray Speth
5fff5ce99f [Thermo] Slightly simplify adding species 
Eliminate the freezeSpecies and init methods of class Phase, instead adjusting
array sizes as new species are added.
 2013-10-04 16:22:35 +00:00
Harry Moffat
5720d7cf90 Fixed an error where the users data was changed before it was used. 
Eliminated some deprecations which were not sanctioned.

Worked on Cantera.mak. There is a problem with scons eliminating $ from strings.
 2013-09-06 22:52:59 +00:00
Harry Moffat
cfa4493b51 Worked on fixing errors in the code that caused problems with downstream code. 
Took out single_species compilation option

took out some deprecated warnings

Fixed an error in copy constructors for thermo.

Still an error with PYTHONPATH and the test suite

 -- more to come.
 2013-09-02 00:58:28 +00:00
Ray Speth
0295f975e0 [Reactor] Refactor handling of sensitivity parameters in evalEqs 2013-07-30 15:57:48 +00:00
Ray Speth
957c88fcff Bump version to 2.1.0 2013-10-24 02:40:14 +00:00
Ray Speth
be1573e85e [SCons] Fix undefined build variable when building MSI 2013-10-24 02:40:12 +00:00
Ray Speth
904e3e66e9 [ck2cti] Accept reaction units declared in either order 
That is, energy followed by quantity or quantity followed by energy.
 2013-10-21 22:13:00 +00:00
Ray Speth
c885a88817 Use fully qualified names for isnan, isinf, and finite 
Specify the versions in the global namespace, to avoid ambiguity
between these and the versions in namespace std that are available in
C++11.
 2013-10-21 22:12:57 +00:00
Ray Speth
94f1b35b79 [ck2cti] Partial support for scientific notation in stoichiometric coefficients 
This won't work for positive exponents, because the '+' will still be
interpreted as a delimiter between terms of the reaction expression.
 2013-10-21 01:55:18 +00:00
Ray Speth
6d5b7999de [SCons] Use specified 'python_compiler' to link Python module 
Fixes Issue 179.
 2013-10-15 17:06:35 +00:00
Ray Speth
f871dd8cf0 [SCons] Add 'python_compiler' option for Cython module compilation 2013-10-15 14:59:31 +00:00
Ray Speth
335e8fcd07 [Samples] Fix missing includes in C++ sample programs 2013-10-07 15:17:28 +00:00
Ray Speth
584392d856 [SCons] Fix linking boost_thread in more places 2013-09-30 16:02:39 +00:00
Ray Speth
c028f4cc5c [SCons] Link boost_thread when building cti2ctml 
Fixes compilation errors with some versions of Boost.
 2013-09-30 01:54:18 +00:00
Ray Speth
2de0ae6350 [SCons/Cython] Fix library_dirs to include BLAS/LAPACK directory 2013-09-30 01:54:12 +00:00
Ray Speth
ddb8bf8eb8 [OneD] Make StFlow::componentIndex virtual 2013-09-30 01:54:06 +00:00
Ray Speth
8498123689 [ck2cti] Show line number for some parsing errors 2013-09-30 01:54:00 +00:00
Ray Speth
f95bc8fb43 [Equil] Avoid floating point overflow from pressure term 
Since computing the residual norm effectively requires p**2, the
correct limit to avoid an overflow is sqrt(DBL_MAX), or roughly
exp(300).

This change fixes crashes due to SIGFPE in cases where floating point
exceptions have been enabled, and also fixes a few cases where the
solver did not previously converge.
 2013-09-30 01:53:54 +00:00
Ray Speth
2ac98393bd [Equil] Remove a calculation with an unused result 2013-09-30 01:53:48 +00:00
Ray Speth
a6f4c111e7 [Cython] Add declarations for free functions to _cantera.pxd 2013-09-30 01:53:40 +00:00
Ray Speth
0458eb736f [Cython] Add __init__.pxd to allow 'from cantera cimport ...' 2013-09-28 18:18:23 +00:00
Ray Speth
a6ce399374 [Cython] Move extra Cython-related headers to main include directory 2013-09-28 18:18:12 +00:00
Ray Speth
332569114e [Cython] Install headers needed for derived Cython modules 2013-09-25 23:05:21 +00:00
Ray Speth
7520170f30 [Cython] Improve support for building derived Cython modules 
The .pxd file now contains declarations for all of the cdef classes,
and is installed with the module.
 2013-09-25 22:57:36 +00:00
Ray Speth
55ece82319 [clib] Fix bounds check on getMolecularWeights 
The incorrect bounds check here caused problems with phases where
there were more elements than species.

Fixes Issue 173.
 2013-09-19 14:49:09 +00:00
Ray Speth
dab827d763 [ck2cti] Make permissive mode default when run from Matlab or C++ 2013-09-12 16:04:13 +00:00
Ray Speth
8a58b12698 [ck2cti] Fix to work with Cython module when called from Matlab or C++ 2013-09-12 16:04:04 +00:00
Ray Speth
721f0266be [SCons] Fix some dependency issues for building "ctpath.m" 2013-09-06 20:34:18 +00:00
Ray Speth
7683677cac Bump version to 2.1.0b3 2013-09-01 00:33:55 +00:00
Ray Speth
b0635fe748 [SCons] Fix compilation of Python 3 module when PYTHONHOME is set 2013-09-01 00:33:49 +00:00
Ray Speth
9f90edc313 [SCons] Update version information for Windows installer 2013-09-01 00:33:43 +00:00
Ray Speth
fc878f09fd [SCons] Include Sundials library and header files in Windows installer 2013-09-01 00:33:37 +00:00
Ray Speth
1969a4d399 [SCons] Add configuration option for specifying required Boost libraries. 
The set of Boost libraries which are required by Cantera, through the use of
Boost.Thread, depends on the Boost version. The static libraries are needed
when compiling anything that links to Cantera, so these libraries are copied
to the Cantera installation directory on Windows, where compiling Boost from
source is a burden.
 2013-09-01 00:33:32 +00:00
Ray Speth
93e672046a [Doc] Update docs for ReactionData and SurfaceArrhenius 2013-09-01 00:33:27 +00:00
Ray Speth
cf0a418027 [Reactor] Fix segfault when requesting sensitivities at t = 0 2013-09-01 00:33:19 +00:00
Ray Speth
7447c5957d [Thermo] Fix deleting objects that have manually-added species 2013-09-01 00:33:06 +00:00
Ray Speth
717a2367b1 [Transport] Add electricalConductivity method to all language interfaces 
Thanks to user 'hencken' for the patch.

Resolves Issue 171.
 2013-08-23 17:43:55 +00:00
Ray Speth
f61cbeafcb [Equil] Fix infinite loop in VCS equilibrium solver 
The threshold being removed here was introduced in r714, which was merged into
trunk in r1115.

Fixes Issue 113.
 2013-08-23 17:43:44 +00:00
Ray Speth
4534bbd21b [Doc] Add all Matlab examples to the Sphinx docs 2013-08-22 21:46:37 +00:00
Ray Speth
1cedf904df [Doc] Add all Python examples to the Sphinx docs 2013-08-22 21:46:27 +00:00
Ray Speth
8d7f48d031 [Cython] Minor reorganization of examples 2013-08-22 21:46:17 +00:00
Ray Speth
1592ee37df Add a note indicating the location of the Cython examples 2013-08-22 21:46:09 +00:00
Ray Speth
3d5ac35c6f [Test] Avoid exact comparisons of floating point numbers 2013-08-21 19:49:37 +00:00
Ray Speth
32ea4fd924 [SCons] Fix to skip Python startup messages 
This fixes an issue when the Python interpreter prints startup messages that
appear before the expected output lines. Known to be a problem with the Anaconda
Python distribution.
 2013-08-16 17:25:04 +00:00
Ray Speth
d60629ead5 [Cython] Fix syntax errors in MixMaster for Python 3 
Backticks are not allowed in Python 3 (equivalent to repr)
 2013-08-14 17:56:05 +00:00
Ray Speth
a22ceda566 [Scons] Fix build order dependencies for python modules 2013-08-14 17:55:51 +00:00