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Author SHA1 Message Date
Ray Speth
75d9ef93c5 Clean up Doxygen docs and comments for numerics classes 2015-11-12 11:41:34 -05:00
Ray Speth
0c8bf1fd08 Clean up Doxygen docs and comments for Transport classes 2015-11-12 11:41:34 -05:00
Ray Speth
fe4035647f Clean up remaining Thermo comments 2015-11-12 11:41:34 -05:00
Ray Speth
f8b12adef4 Clean up comments in 'base' source and header files 2015-11-09 19:35:52 -05:00
Ray Speth
5a0a6b855c Clean up Doxygen comments in VPSSMgr and descendants 2015-11-09 17:59:22 -05:00
Ray Speth
cd1f1fd5ac [Doc] Clean up Doxygen documentation for ThermoPhase classes 
Remove redundant documentation from overloaded methods which does not add any
additional information.

Reformat to to make indentation and line lengths more consistent.
 2015-11-09 17:59:22 -05:00
Ray Speth
78b471fbf9 Clean up doxygen comments for SpeciesThermoInterpType classes 2015-11-09 17:59:22 -05:00
Ray Speth
75b0c71044 Clean up comments in Kinetics 2015-11-09 17:59:22 -05:00
Ray Speth
5bf3b0fc67 Clean up comments in other equilibrium-related classes 2015-11-09 17:59:22 -05:00
Ray Speth
618c485c55 Clean up comments in VCS equilibrium solver 2015-11-09 17:34:46 -05:00
Ray Speth
4382ae6c85 Clean up comments in Thermo class source files 2015-11-09 17:34:46 -05:00
Steven DeCaluwe
14864e840b Extend NoNorm option for setCoverages to the Matlab toolbox 
Because normalizing the species coverages leads to incorrect Jacobian
calculations, it is sometimes necessary to not normalize the coverages.
As for bulk species mass/mole fractions, this option is currently only
available when passing the coverages as a vector (i.e., not available
for string identifiers).
 2015-11-07 21:14:03 -05:00
Ray Speth
70fe821c19 Deprecate FuncEval::getInitialConditions and related functions 2015-11-06 14:40:48 -05:00
Thomas Fiala
de133f1a3d [Reactor] Divide residuals by sqrt(n_vars) in advance_to_steady_state 2015-11-03 15:46:07 -05:00
Thomas Fiala
304364c203 [Reactor] Add documentation for advance_to_steady_state 
Also, update tutorials to use this feature.
 2015-11-03 15:46:07 -05:00
Thomas Fiala
57e3ee8c1a [Reactor] Implement the Cython function advance_to_steady_state 
Resolves #95
Resolves #303
 2015-11-03 15:41:58 -05:00
Thomas Fiala
16ab7dff51 [Reactor] Implement functions getState for reactors and reactor networks 
These are simpler forms of getInitialConditions.
 2015-11-03 14:34:28 -05:00
Ray Speth
592a40a1de [SCons] Remove unused configuration options 2015-10-29 22:26:52 -04:00
Ray Speth
c983d730a6 [SCons] Remove 'include/cantera/ext' when running 'scons clean' 2015-10-29 12:27:47 -04:00
Ray Speth
84566a3a7d [SCons] Fix incorrect directory created in build tree 
The 'Mkdir' command was creating a (literal) '#include' directory, rather than
taking the '#' to mean the top of the source tree. The 'Mkdir' command is
unnecessary anyway, since the 'Copy' command will create the necessary
subdirectory.

Fixes #304.
 2015-10-29 12:27:47 -04:00
Bryan W. Weber
afde0a7b52 [Doc] Remove old F77 and F90 SCons options from Intel instructions 2015-10-28 15:33:13 -04:00
Bryan W. Weber
d4fb85d4c3 [Doc] Clarify cloning instructions 
Clarify the instructions on how to clone the repository and which tags or branches should be checked out to get certain releases of the software.
 2015-10-28 15:31:33 -04:00
Bryan W. Weber
b395c68236 [SCons] Fix Cantera.mak cannot be written if extra_inc_dirs or extra_lib_dirs is specified 2015-10-28 12:55:23 -04:00
Bryan W. Weber
6cca4cf55c [Doc] Recommend to use pip to install optional Python packages on Ubuntu 2015-10-26 10:32:31 -04:00
imitrichev
f7a0e14f3e Remove unused field m_logA from class SurfaceArrhenius 2015-10-25 15:41:59 -04:00
imitrichev
40e09043bc Added methods to InterfaceKinetics to get effective rate parameters 
Effective rate parameters are used in SurfaceArrhenius reactions.

Resolves #297.
 2015-10-25 15:41:31 -04:00
Ivan Mitrichev
02fc127c13 Cython minimum version is 0.19 
Also, setuptools is required to build/install the python module.

Resolves #302.
 2015-10-25 14:15:45 -04:00
Bryan W. Weber
2e79a0978e [Doc] Update Homebrew install instructions. 
Update the Homebrew install instructions with a recommendation on how to install the Matlab toolbox and add additional options that are supported during the install process.
 2015-10-25 09:15:31 -04:00
Ray Speth
f910f8c3ee Bump development version to 2.3.0a1 2015-10-24 20:21:32 -04:00
Ray Speth
02ee03ffb2 [Doc] Mention IPython and Matplotlib in installation instructions 2015-10-24 17:47:49 -04:00
Ray Speth
92311f0b67 [Doc] Mention '--with-python3' option for Homebrew installer 2015-10-24 17:47:49 -04:00
Bryan W. Weber
eee1de7368 Merge pull request #300 from bryanwweber/fix-matlab-purefluid-functions 
Fix Matlab PureFluid functions and documentation
 2015-10-24 15:16:40 -04:00
Bryan W. Weber
0be9e7eef7 [Matlab] Fix spacing in private functions 2015-10-24 08:05:52 -04:00
Bryan W. Weber
0b5c97ad4f [Doc] Correct docs for setState_*sat in Matlab 
Correct the documentation to clarify that a vector must be passed in to
these functions, not a single value.
 2015-10-24 08:05:45 -04:00
Bryan W. Weber
5aabfe9704 [Matlab] Fix setState_sat*.m functions 
Fix the setState_satLiquid and setState_satVapor functions so that they call the main set
method instead of the underlying C++ layer. Resolves #299.
 2015-10-24 07:56:10 -04:00
Ray Speth
87aaa6ad1e Use math functions from C++11 standard library 2015-10-19 13:14:40 -04:00
Ray Speth
0542e694a9 [Thermo] Merge classes StoichSubstance and StoichSubstanceSSTP 
Use the implementation of StoichSubstanceSSTP (descended from
SingleSpeciesTP) but change the name to StoichSubstance.
 2015-10-19 00:17:40 -04:00
Ray Speth
ffab95f3ef Automatically check out cppformat submodule if needed 2015-10-18 18:54:09 -04:00
Ray Speth
4a411b76bb Use git submodule for googletest 2015-10-18 18:54:09 -04:00
Ray Speth
c0eca16b34 Exclude cppformat from Doxygen docs 2015-10-17 22:43:20 -04:00
Ray Speth
e094967ebb [Doc] Update version requirements 2015-10-17 22:35:37 -04:00
Ray Speth
c8e380d88c [SCons] Invalid command line arguments set a non-zero return code 2015-10-17 19:00:18 -04:00
Ray Speth
90b0ee152b Fix compilation with GCC 4.6 and 4.7 
The standard libraries for these versions of GCC do not have 'emplace'
methods for associative containers.
 2015-10-17 18:58:50 -04:00
Ray Speth
7c9bc364f5 [SCons] Add helpful error message when cppformat submodule is missing 2015-10-17 18:58:50 -04:00
Ray Speth
0647823ada Replace DATA_PTR macro with calls to data() 2015-10-17 18:58:50 -04:00
Ray Speth
8b16eb489f Eliminate unnecessary aliases for member variables in HMWSoln 2015-10-17 18:58:50 -04:00
Ray Speth
91d3002df1 Make use of "make_shared" where possible 2015-10-17 18:58:50 -04:00
Ray Speth
a945ef2c23 Make use of initializer lists where appropriate 2015-10-17 18:58:50 -04:00
Ray Speth
f9375e1a09 Use locks/mutexes from the standard library instead of Boost.Thread 
This eliminates the need to link against any of the compiled Boost libraries,
and means that we can always build in thread-safe mode
 2015-10-17 18:58:50 -04:00
Ray Speth
a03f370cfd Make use of emplace and emplace_back methods 2015-10-14 18:45:23 -04:00