Formerly getExchangeCurrentQuantities() is now
updateExchangeCurrentQuantities(). This method updates things like
m_StandardConc for computing reaction rates.
Formerly applyExchangeCurrentDensityFormulation() is now
convertExchangeCurrentDensityFormulation(). This method converts
rate expressions from A/m2 to kmol/m2/s.
For some compilers (gfortran), there is no space in the argument for specifying
a module directory, e.g. '-Jdir', while for others (ifort), there is,
e.g. '-module dir'. This substitutes the correct prefix directly into the
compiler command line to avoid the confusion associated with having a variable
defined with a meaningful trailing space.
The Sundials CMakeLists.txt was not correctly updated for the 2.5.0 release, and
builds a version of Sundials that still claims to be 2.4.0. This leads to
compilation errors since some Sundials functions have changed signatures between
2.4 and 2.5, and Canteran needs to distinguish between the two.
Eliminates the need for redundant implementations in all the derived
classes. Also, make the return value a "const char*" to eliminate the dangerous
cast.
This function isn't actually called by CVODE (which uses its own difference
quotient method for calculating the Jacobian), so the note here isn't correct.
Since stdout may be used for writing the actual output file, direct all error
and debug messages to stderr, so that they can be shown to the user when
ctml_writer is invoked via ct2ctml_string.
ThermoPhase already provides an implementation of these methods that raises
an exception to indicate that the method is unimplemented. Therefore,
derived classes which do not implement a method do not need to do this.
Calling solve() again after a successful solution no longer automatically
triggers a Jacobian update. This enables relatively efficient sensitivity
analysis by sequentially perturbing the reaction multipliers and re-solving
the system. Since the perturbed system is close to the orignal, the solution
can be found after only a few steps, even when using the original Jacobian.
