Commit graph

137 commits

Author SHA1 Message Date
Henry Weller
dee0264768 Removed #define __STDC_LIMIT_MACROS needed for C++ < 11
See http://bugs.openfoam.org/view.php?id=1474
2016-10-04 08:08:42 +01:00
Henry Weller
521d7a4aec globalIndexAndTransform: Support any number of transforms but no more than 3 per point
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=1815
2016-09-22 14:10:45 +01:00
Henry Weller
d245a7e485 septernion: Correct quaternion normalization after averaging
Resolves bug-report http://bugs.openfoam.org/view.php?id=2203
2016-08-19 20:32:30 +01:00
Henry Weller
3744137dc5 /primitives/triad: Initialize array to avoid warning from icpc 2016-08-18 11:22:15 +01:00
Henry Weller
39c241689e primitives/hashes/SHA1: undef macros 2016-08-17 23:03:27 +01:00
Henry Weller
3d742e78a9 OpenFOAM/containers: Standardized assignment docs 2016-08-12 10:00:48 +01:00
Henry Weller
7656c076c8 C++11: Replaced the C NULL with the safer C++11 nullptr
Requires gcc version 4.7 or higher
2016-08-05 17:19:38 +01:00
Henry Weller
4aa5e9299b Scalar.H: Minor reorganization 2016-07-18 16:02:29 +01:00
Henry Weller
f4a588d421 uint: Changed 'uint' to 'unsigned int'
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2152
2016-07-15 11:44:56 +01:00
Henry Weller
26a3e56c4f Reacting solvers: Added check for the existence of the inert specie 2016-07-06 17:45:34 +01:00
Henry Weller
97a889dbd8 src/OpenFOAM/primitives/ints: Further tweaks
Resolved additional bug-report http://bugs.openfoam.org/view.php?id=2137
2016-07-01 14:52:54 +01:00
Henry Weller
adc816a85d timeVaryingMappedFixedValue: Reinstated support for AverageField 2016-07-01 10:26:20 +01:00
Henry Weller
e78e346781 Updated header 2016-07-01 10:25:38 +01:00
Henry Weller
c488c02082 src/OpenFOAM/primitives/ints: Corrected MIN and MAX for uints
Resolves bug-report http://bugs.openfoam.org/view.php?id=2137
2016-07-01 10:24:42 +01:00
Henry Weller
e39282627b uLabel: Removed unnecessary checks for < 0
Resolves bug-report http://bugs.openfoam.org/view.php?id=2128
2016-06-21 11:05:04 +01:00
Henry Weller
8a5304edf6 Doxygen documentation: Standardized the 'See also' heading 2016-06-17 17:31:34 +01:00
Henry Weller
3980082fe2 Added forward declaration of friend functions 2016-05-29 22:28:37 +01:00
Henry Weller
8b672f0f1a postProcessing: Replaced 'foamCalc' and the 'postCalc' utilities
with the more general and flexible 'postProcess' utility and '-postProcess' solver option

Rationale
---------

Both the 'postProcess' utility and '-postProcess' solver option use the
same extensive set of functionObjects available for data-processing
during the run avoiding the substantial code duplication necessary for
the 'foamCalc' and 'postCalc' utilities and simplifying maintenance.
Additionally consistency is guaranteed between solver data processing
and post-processing.

The functionObjects have been substantially re-written and generalized
to simplify development and encourage contribution.

Configuration
-------------

An extensive set of simple functionObject configuration files are
provided in

OpenFOAM-dev/etc/caseDicts/postProcessing

and more will be added in the future.  These can either be copied into
'<case>/system' directory and included into the 'controlDict.functions'
sub-dictionary or included directly from 'etc/caseDicts/postProcessing'
using the '#includeEtc' directive or the new and more convenient
'#includeFunc' directive which searches the
'<etc>/caseDicts/postProcessing' directories for the selected
functionObject, e.g.

functions
{
    #includeFunc Q
    #includeFunc Lambda2
}

'#includeFunc' first searches the '<case>/system' directory in case
there is a local configuration.

Description of #includeFunc
---------------------------

    Specify a functionObject dictionary file to include, expects the
    functionObject name to follow (without quotes).

    Search for functionObject dictionary file in
    user/group/shipped directories.
    The search scheme allows for version-specific and
    version-independent files using the following hierarchy:
    - \b user settings:
      - ~/.OpenFOAM/\<VERSION\>/caseDicts/postProcessing
      - ~/.OpenFOAM/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is set):
      - $WM_PROJECT_SITE/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_SITE/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is not set):
      - $WM_PROJECT_INST_DIR/site/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_INST_DIR/site/caseDicts/postProcessing
    - \b other (shipped) settings:
      - $WM_PROJECT_DIR/etc/caseDicts/postProcessing

    An example of the \c \#includeFunc directive:
    \verbatim
        #includeFunc <funcName>
    \endverbatim

postProcess
-----------

The 'postProcess' utility and '-postProcess' solver option provide the
same set of controls to execute functionObjects after the run either by
reading a specified set of fields to process in the case of
'postProcess' or by reading all fields and models required to start the
run in the case of '-postProcess' for each selected time:

postProcess -help

Usage: postProcess [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

 pimpleFoam -postProcess -help

Usage: pimpleFoam [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -postProcess      Execute functionObjects only
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

The functionObjects to execute may be specified on the command-line
using the '-func' option for a single functionObject or '-funcs' for a
list, e.g.

postProcess -func Q
postProcess -funcs '(div(U) div(phi))'

In the case of 'Q' the default field to process is 'U' which is
specified in and read from the configuration file but this may be
overridden thus:

postProcess -func 'Q(Ua)'

as is done in the example above to calculate the two forms of the divergence of
the velocity field.  Additional fields which the functionObjects may depend on
can be specified using the '-field' or '-fields' options.

The 'postProcess' utility can only be used to execute functionObjects which
process fields present in the time directories.  However, functionObjects which
depend on fields obtained from models, e.g. properties derived from turbulence
models can be executed using the '-postProcess' of the appropriate solver, e.g.

pisoFoam -postProcess -func PecletNo

or

sonicFoam -postProcess -func MachNo

In this case all required fields will have already been read so the '-field' or
'-fields' options are not be needed.

Henry G. Weller
CFD Direct Ltd.
2016-05-28 18:58:48 +01:00
Henry Weller
c2328cba3c fileName: Added recursive directory search function
//- Recursively search the given directory for the file
    //  returning the path relative to the directory or
    //  fileName::null if not found
    fileName search(const word& file, const fileName& directory);
2016-05-26 21:43:16 +01:00
Henry Weller
ae9889697e Scalar: Documented 'posPart' and 'negPart' 2016-05-19 09:39:45 +01:00
Henry Weller
4500971827 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
Henry Weller
1441f8cab0 Patches contributed by Mattijs Janssens:
splitMeshRegions: handle flipping of faces for surface fields

subsetMesh: subset dimensionedFields

decomposePar: use run-time selection of decomposition constraints. Used to
    keep cells on particular processors. See the decomposeParDict in

$FOAM_UTILITIES/parallel/decomposePar:
  - preserveBaffles: keep baffle faces on same processor
  - preserveFaceZones: keep faceZones owner and neighbour on same processor
  - preservePatches: keep owner and neighbour on same processor. Note: not
    suitable for cyclicAMI since these are not coupled on the patch level
  - singleProcessorFaceSets: keep complete faceSet on a single processor
  - refinementHistory: keep cells originating from a single cell on the
    same processor.

decomposePar: clean up decomposition of refinement data from snappyHexMesh

reconstructPar: reconstruct refinement data (refineHexMesh, snappyHexMesh)

reconstructParMesh: reconstruct refinement data (refineHexMesh, snappyHexMesh)

redistributePar:
  - corrected mapping surfaceFields
  - adding processor patches in order consistent with decomposePar

argList: check that slaves are running same version as master

fvMeshSubset: move to dynamicMesh library

fvMeshDistribute:
  - support for mapping dimensionedFields
  - corrected mapping of surfaceFields

parallel routines: allow parallel running on single processor

Field: support for
  - distributed mapping
  - mapping with flipping

mapDistribute: support for flipping

AMIInterpolation: avoid constructing localPoints
2016-05-15 16:36:48 +01:00
Henry Weller
758dfc2c1f Standardized the naming of functions which control the writing of fields etc.
to have the prefix 'write' rather than 'output'

So outputTime() -> writeTime()

but 'outputTime()' is still supported for backward-compatibility.

Also removed the redundant secondary-writing functionality from Time
which has been superseded by the 'writeRegisteredObject' functionObject.
2016-05-12 17:38:01 +01:00
Henry Weller
e1205379eb Doxygen documentation: Use C++-style comments for enumeration elements 2016-05-11 23:10:42 +01:00
Henry Weller
b72b9dcf88 primitives/direction: Changed from "char" to "int8_t" and added IO operators
to avoid problems when writing "nComponents"
2016-05-06 17:40:49 +01:00
Henry Weller
cb9732204d Replaced StaticAssert with the C++11 equivalent static_assert 2016-04-26 20:44:55 +01:00
Henry Weller
6fd4ce6cc3 Revert "src/postProcessing/functionObjects/field/Make/files: Corrected"
This reverts commit 73fe45cd27.
2016-04-26 20:33:45 +01:00
Henry Weller
73fe45cd27 src/postProcessing/functionObjects/field/Make/files: Corrected 2016-04-26 20:31:58 +01:00
Henry Weller
a8bf4be58a Standardized cell, patch, face and processor loop index names 2016-04-25 12:00:53 +01:00
Henry Weller
8c4f6b8fcb Standardized cell, patch and face loop index names 2016-04-25 10:28:32 +01:00
Henry Weller
56059e7fb9 Tensor, SymmTensor: Simplified invariantII
Now the calculation of the 2nd-invariant is more efficient and
accumulates less round-off error.
2016-04-21 21:07:39 +01:00
Henry Weller
99a987f1d5 src/OpenFOAM/primitives: inherit operator=(const Foam::zero) from base class where appropriate 2016-04-17 21:02:57 +01:00
Henry Weller
287603474a vector::zero -> Zero 2016-04-16 18:34:41 +01:00
Henry Weller
fc32d53828 quaternion/septernion: Added multi- quaternion/septernion averaging
Using method based on
http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/20070017872.pdf
but simplified for the case where the quaternions are similar.
2016-04-16 15:59:05 +01:00
Henry Weller
860a82c0d4 vector::zero -> Zero 2016-04-15 11:32:42 +01:00
Henry Weller
6a5d5e903e septernion: Changed definition of the forward transformation for consistency with spatialTransform
inline Foam::vector Foam::septernion::transformPoint(const vector& v) const
{
    return r().transform(v - t());
}

Now there is a 1:1 correspondence between septernion and
spatialTransform and a septernion constructor from spatialTransform
provided.

Additionally "septernion::transform" has been renamed
"septernion::transformPoint" to clarify that it transforms coordinate
points rather than displacements or other relative vectors.
2016-04-15 11:27:18 +01:00
Henry Weller
4197cb075a quaternion: Added static member function to return a unit quaternion constructed from a vector
//- Return the unit quaternion (versor) from the given vector
    //  (w = sqrt(1 - |sqr(v)|))
    static inline quaternion unit(const vector& v);
2016-04-12 21:43:03 +01:00
Henry Weller
292543a3a5 spatialTransform: Added the "&&" operator to transform positions 2016-04-10 23:06:35 +01:00
Henry Weller
8ffd700ca6 rigidBodyDynamics: Added dictionary-based IO of the rigidBodyModel 2016-04-07 21:47:08 +01:00
Henry Weller
d4476c3946 VectorI: Added dummy innerProduct for scalar
to allow the construction of vtables for virtual member functions
involving the inner-products of fields for which a "NotImplemented"
specialization for scalar is provided.
2016-04-06 14:22:33 +01:00
Henry Weller
569b915d5d Updated headers 2016-04-06 14:22:24 +01:00
Henry Weller
1ae1b9f1d8 geometricOneField: Enhanced to provide better correspondence to GeometricField 2016-04-06 14:21:04 +01:00
Henry Weller
64c08b084e spatialTransformI.H: Corrected doc 2016-04-01 14:53:23 +01:00
Henry Weller
84dad12014 spatialTransform: Include spatialTensor.H 2016-03-30 18:17:27 +01:00
Henry Weller
c0a1646401 MatrixSpace: Add support for block conversion into VectorSpace 2016-03-30 18:16:47 +01:00
Henry Weller
9e5013bcb5 MatrixSpace: Corrected typo 2016-03-30 18:16:20 +01:00
Henry Weller
709526bc3a Identity: Make cast-to-primitive operators explicit
to avoid operator resolution ambiguities when compiling single-precision
2016-03-24 23:04:53 +00:00
Henry Weller
019bf94006 Matrices: Rename private member 'nRows_' -> 'mRows_' for consistency with access member function 'm()' 2016-03-23 12:49:03 +00:00
Henry Weller
44c73bfbe1 Made all template declarations consistent using 'class' rather than 'typename' 2016-03-22 15:02:55 +00:00
Henry Weller
feada18b40 Identity: Added conversion to label 2016-03-22 14:12:53 +00:00