commit c4bb8c516deceb290978d0f2cb2997085c4000d9
Author: changfly <changfly@postech.ac.kr>
Date:   Sat Sep 16 00:55:00 2017 +0900

    Foam utility to check particle positions are in the domain

diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..6f4ea81
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,72 @@
+# git-ls-files --others --exclude-from=.git/info/exclude
+# Lines that start with '#' are comments.
+
+# Editor and misc backup files - anywhere
+*~
+.*~
+*.bak
+*.bak[0-9][0-9]
+\#*\#
+
+# File-browser settings - anywhere
+.directory
+
+# CVS recovered versions - anywhere
+.#*
+
+# Objects and archives - anywhere
+*.[oa]
+*.la
+*.so
+
+# Derived files
+lex.yy.c
+
+# Corefiles
+core
+
+# Dependency files - anywhere
+*.dep
+
+# lnInclude (symlink) directories - anywhere
+lnInclude
+
+# Build directories - anywhere
+linux*Clang*/
+linux*Gcc*/
+linux*Icc*/
+solaris*Gcc*/
+SunOS*Gcc*/
+platforms/
+
+# Generated files in the main directory (e.g. ReleaseNotes-?.?.html)
+# and in the doc directory
+/*.html
+/doc/*.html
+
+# Source packages - anywhere
+*.tar.bz2
+*.tar.gz
+*.tar
+*.tgz
+*.gtgz
+
+# Ignore the persistent .build tag in the main directory
+/.build
+
+# Ignore .timeStamp in the main directory
+/.timeStamp
+
+# Ignore .tags in the main directory
+/.tags
+
+# Ignore project files in the main directory
+/.cproject
+/.project
+/.dir-locals.el
+
+# Ignore the test directory
+/tutorialsTest
+
+.*.swp
+*.gz
diff --git a/Make/files b/Make/files
new file mode 100644
index 0000000..b2e858b
--- /dev/null
+++ b/Make/files
@@ -0,0 +1,3 @@
+checkParticles.C
+
+EXE = $(FOAM_USER_APPBIN)/checkParticles
diff --git a/Make/options b/Make/options
new file mode 100644
index 0000000..d27c95d
--- /dev/null
+++ b/Make/options
@@ -0,0 +1,7 @@
+EXE_INC = \
+    -I$(LIB_SRC)/finiteVolume/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude
+
+EXE_LIBS = \
+    -lfiniteVolume \
+    -lmeshTools
diff --git a/checkParticles.C b/checkParticles.C
new file mode 100644
index 0000000..82ed8df
--- /dev/null
+++ b/checkParticles.C
@@ -0,0 +1,150 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2011-2016 OpenFOAM Foundation
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by
+    the Free Software Foundation, either version 3 of the License, or
+    (at your option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+
+Application
+    checkParticles
+
+Description
+    Utility for checking position of manually injected particles
+
+\*---------------------------------------------------------------------------*/
+
+#include "fvCFD.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+int main(int argc, char *argv[])
+{
+    argList::addOption
+    (
+        "cloud",
+        "cloudPrefix",
+        "cloudPrefix := { kinematic, reacting, ... }, default is reacting"
+    );
+
+    #include "setRootCase.H"
+    #include "createTime.H"
+    #include "createMesh.H"
+
+    const word modExt ("valid");
+
+    word cloudKind ("reacting");
+    args.optionReadIfPresent("cloud", cloudKind);
+
+    IOdictionary cloudProp
+        (
+         IOobject
+         (
+          cloudKind + "CloudProperties",
+          runTime.constant(),
+          mesh,
+          IOobject::MUST_READ_IF_MODIFIED,
+          IOobject::NO_WRITE
+         )
+        );
+
+    dictionary injDict (cloudProp.subDict("subModels").subDict("injectionModels"));
+
+    for (dictionary::iterator i = injDict.begin(); i != injDict.end(); ++i)
+    {
+        Info << "Checking " << (*i).name().name() << endl;
+
+        Info << *i;
+
+        word injectionType ((*i).dict().lookup("type"));
+
+        if (injectionType == "manualInjection")
+        {
+            word posFileName ((*i).dict().lookup("positionsFile"));
+
+            vectorIOField positions_
+            (
+                 IOobject
+                 (
+                  posFileName,
+                  runTime.constant(),
+                  mesh,
+                  IOobject::MUST_READ,
+                  IOobject::NO_WRITE
+                 )
+            );
+
+            vectorIOField oldPositions
+            (
+                 IOobject
+                 (
+                  posFileName + ".old",
+                  runTime.constant(),
+                  mesh,
+                  IOobject::NO_READ,
+                  IOobject::NO_WRITE
+                 ),
+                 positions_
+            );
+
+            // Info << vectorIOField::subField(positions_, 10);
+
+            labelList validIndices (positions_.size(), -1);
+            label validCount = 0;
+
+            forAll (positions_, pI)
+            {
+                label celli, tfi, tpi;
+                point pos (positions_[pI]);
+                mesh.findCellFacePt (pos, celli, tfi, tpi);
+
+                if (celli < 0)
+                {
+                    Info << "Particle " << pI 
+                        << " at " << pos << " not in the domain" 
+                        << endl;
+                }
+                else
+                {
+                    validIndices[validCount] = pI;
+                    validCount++;
+                }
+            }
+
+            Info << (positions_.size() - validCount) << " particles are in bad position" << endl;
+
+            if (validCount < positions_.size())
+            {
+                Info << "Update positions file " << posFileName << endl;
+
+                vectorField newPositions_ (positions_, labelList::subList(validIndices, validCount));
+                positions_.transfer(newPositions_);
+
+                positions_.write();
+                oldPositions.write();
+            }
+        }
+    }
+
+    Info<< "End\n" << endl;
+
+    return 0;
+}
+
+
+// ************************************************************************* //