cantera/site_scons/buildutils.py

609 lines
18 KiB
Python

import os
from os.path import join as pjoin
from os.path import normpath
import sys
import platform
import textwrap
import re
import subprocess
import difflib
import time
import types
import shutil
import itertools
import SCons.Errors
import SCons
import SCons.Node.FS
from distutils.version import LooseVersion, StrictVersion
import distutils.sysconfig
class DefineDict(object):
"""
A dictionary-like object which generates appropriate preprocessor
define statements from its dict of variable / value
pairs. Variables whose value is None or that are not in the dict
are left undefined.
"""
def __init__(self, data):
self.data = data
self.undefined = set()
def __getitem__(self, key):
if key not in self.data:
self.undefined.add(key)
return '/* #undef %s */' % key
elif self.data[key] is None:
return '/* #undef %s */' % key
else:
return '#define %s %s' % (key, self.data[key])
class ConfigBuilder(object):
"""
Used along with DefineDict to generate a customized config.h file
from a config.h.in file using the variables given in 'defines'.
"""
def __init__(self, defines):
self.defines = DefineDict(defines)
def __call__(self, source, target, env):
for s, t in zip(source, target):
config_h_in = file(str(s), "r")
config_h = file(str(t), "w")
config_h.write(config_h_in.read() % self.defines)
config_h_in.close()
config_h.close()
self.print_config(str(t))
def print_config(self, filename):
print 'Generating %s with the following settings:' % filename
for key, val in sorted(self.defines.data.iteritems()):
if val is not None:
print " %-35s %s" % (key, val)
for key in sorted(self.defines.undefined):
print " %-35s %s" % (key, '*undefined*')
class TestResults(object):
"""
A class that stores information about all the regression tests
that are defined and which ones have passed / failed in order to
print a summary at the end of the build process.
"""
def __init__(self):
self.tests = {}
self.passed = {}
self.failed = {}
def printReport(self, target, source, env):
if self.failed:
failures = ('Failed tests:' +
''.join('\n - ' + n for n in self.failed) +
'\n')
else:
failures = ''
print """
*****************************
*** Testing Summary ***
*****************************
Tests passed: %(passed)s
Up-to-date tests skipped: %(skipped)s
Tests failed: %(failed)s
%(failures)s
*****************************""" % dict(
passed=sum(self.passed.values()),
failed=sum(self.failed.values()),
skipped=len(self.tests),
failures=failures)
if self.failed:
raise SCons.Errors.BuildError(self, 'One or more tests failed.')
testResults = TestResults()
def regression_test(target, source, env):
"""
Run a regression test comparing the output of a test program with
existing "blessed" output files.
target - The name of an output file that will be generated if
the test is successful.
source - A list containing the name of the program to run and
(optionally) a list of file names to be passed as command line
arguments.
The test also relies on several parameters that are passed in via
variables in the SCons environment:
env['test_command_options'] - non-file command line options
to be passed to to the test program
"""
# unpack:
program = source[0]
if len(source) > 1:
clargs = [s.name for s in source[1:]]
else:
clargs = []
# Name to use for the output file
blessedName = env['test_blessed_file']
if blessedName is not None and 'blessed' in blessedName:
outputName = blessedName.replace('blessed', 'output')
else:
outputName = 'test_output.txt'
# command line options
clopts = env['test_command_options'].split()
# Run the test program
dir = str(target[0].dir.abspath)
with open(pjoin(dir,outputName), 'w') as outfile:
code = subprocess.call([program.abspath] + clopts + clargs,
stdout=outfile, stderr=outfile,
cwd=dir, env=env['ENV'])
if code:
print 'FAILED (program exit code:{0})'.format(code)
diff = 0
# Compare output files
comparisons = env['test_comparisons']
if blessedName is not None:
comparisons.append((blessedName,outputName))
for blessed,output in comparisons:
print """Comparing '%s' with '%s'""" % (blessed, output)
d = compareFiles(env, pjoin(dir, blessed), pjoin(dir, output))
if d:
print 'FAILED'
diff |= d
del testResults.tests[env['active_test_name']]
if diff or code:
if os.path.exists(target[0].abspath):
os.path.unlink(target[0].abspath)
testResults.failed[env['active_test_name']] = 1
else:
print 'PASSED'
open(target[0].path, 'w').write(time.asctime()+'\n')
testResults.passed[env['active_test_name']] = 1
def compareFiles(env, file1, file2):
"""
Compare the contents of two files, using a method chosen based on
their file extensions.
"""
if file1.endswith('csv') and file2.endswith('csv'):
return compareCsvFiles(env, file1, file2)
else:
return compareTextFiles(env, file1, file2)
def compareTextFiles(env, file1, file2):
"""
Compare the contents of two text files while:
- ignoring trailing whitespace
- ignoring any lines starting with strings specified in the
variable env['test_ignoreLines'].
- comparing floating point numbers only up to the printed precision
"""
text1 = [line.rstrip() for line in open(file1).readlines()
if not line.startswith(tuple(env['test_ignoreLines']))]
text2 = [line.rstrip() for line in open(file2).readlines()
if not line.startswith(tuple(env['test_ignoreLines']))]
# Try to compare the files without testing the floating point numbers
diff = list(difflib.unified_diff(text1, text2))
if not diff:
return 0
atol = env['test_csv_threshold']
rtol = env['test_csv_tolerance']
# Replace nearly-equal floating point numbers with exactly equivalent
# representations to avoid confusing difflib
reFloat = re.compile(r'(\s*)([+-]{0,1}\d+\.{0,1}\d*([eE][+-]{0,1}\d*){0,1})')
for i in range(min(len(text1), len(text2))):
line1 = text1[i]
line2 = text2[i]
if line1 == line2:
continue
# group(1) is the left space padding
# group(2) is the number
floats1 = [(m.group(1),m.group(2))
for m in list(reFloat.finditer(line1))]
floats2 = [(m.group(1),m.group(2))
for m in list(reFloat.finditer(line2))]
# If the lines don't contain the same number of numbers,
# we're not going to pass the diff comparison no matter what
if len(floats1) != len(floats2):
continue
allMatch = True
for j in range(len(floats1)):
if floats1[j] == floats2[j]:
# String representations match, so replacement is unnecessary
continue
try:
delta = max(getPrecision(floats1[j][1]), getPrecision(floats2[j][1]))
num1 = float(floats1[j][1])
num2 = float(floats2[j][1])
abserr = abs(num1-num2)
relerr = abserr / (0.5 * abs(num1 + num2) + atol)
if abserr > (1.1*delta + atol) and relerr > rtol:
print 'Values differ: {0: 14g} {1: 14g}; rel. err = {2:.3e}; abs. err = {3:.3e}'.format(num1, num2, relerr, abserr)
allMatch = False
break
except Exception as e:
# Something went wrong -- one of the strings isn't actually a number,
# so just ignore this line and let the test fail
pass
# All the values are sufficiently close, so replace the string
# so that the diff of this line will succeed
if allMatch:
text2[i] = line1
# Try the comparison again
diff = list(difflib.unified_diff(text1, text2))
if diff:
print 'Found differences between %s and %s:' % (file1, file2)
print '>>>'
print '\n'.join(diff)
print '<<<'
return 1
return 0
def getPrecision(x):
"""
Return the number corresponding to the least significant digit of
the number represented by the string 'x'.
"""
x = x.lower()
# Patterns to consider:
# 123
# 123.45
# 123.45e6
# 123e4
if 'e' in x:
x, exponent = x.split('e')
exponent = int(exponent)
else:
exponent = 0
decimalPt = x.find('.')
if decimalPt == -1:
decimalPt = len(x) - 1
precision = decimalPt + exponent - len(x) + 1
return 10**precision
def compareCsvFiles(env, file1, file2):
"""
Compare the contents of two .csv file to see if they are
similar. Similarity is defined according to tolerances stored in
the environment as:
env['test_csv_threshold']
env['test_csv_tolerance']
The comparison for each variable is:
|a-b|/(max(|a|,|b|) + threshold) < tolerance
Returns 0 if all variables in the files are similar and 1 if the
files are dissimilar. Lines containing non-numeric data are
automatically ignored.
"""
try:
import numpy as np
except ImportError:
print 'WARNING: skipping .csv diff because numpy is not installed'
return 0
# decide how many header lines to skip
f = open(file1)
headerRows = 0
goodChars = set('0123456789.+-eE, ')
for line in f:
if not set(line[:-1]).issubset(goodChars):
headerRows += 1
else:
break
try:
data1 = np.genfromtxt(file1, skip_header=headerRows, delimiter=',')
data2 = np.genfromtxt(file2, skip_header=headerRows, delimiter=',')
except (IOError, StopIteration) as e:
print e
return 1
try:
relerror = (np.abs(data2-data1) /
(np.maximum(np.abs(data2), np.abs(data1)) +
env['test_csv_threshold']))
maxerror = np.nanmax(relerror.flat)
except ValueError as e:
print e
return 1
tol = env['test_csv_tolerance']
if maxerror > tol: # Threshold based on printing 6 digits in the CSV file
print ("Files differ. %i / %i elements above specified tolerance (%f)" %
(np.sum(relerror > tol), relerror.size, tol))
print ' row col reference test rel. error'
print ' ---- ---- ------------ ------------ ----------'
for i,j in itertools.product(*map(range, relerror.shape)):
if relerror[i,j] > tol:
row = i + headerRows + 1
col = j + 1
print (' % 4i % 4i % 12f % 12f % 10f' %
(row, col, data1[i,j], data2[i,j], relerror[i,j]))
return 1
else:
return 0
def regression_test_message(target, source, env):
"""
Determines the message printed by SCons while building a
RegressionTest target.
"""
return """* Running test '%s'...""" % env['active_test_name']
def add_RegressionTest(env):
"""
Add "RegressionTest" as a Builder in the specified Scons Environment.
"""
env['BUILDERS']['RegressionTest'] = env.Builder(
action=env.Action(regression_test, regression_test_message))
def quoted(s):
""" Returns the given string wrapped in double quotes."""
return '"%s"' % s
def mglob(env, subdir, *args):
"""
Each arg in args is assumed to be file extension,
unless the arg starts with a '^', in which case the remainder
of the arg is taken to be a complete pattern.
"""
matches = []
for ext in args:
if ext.startswith('^'):
matches += env.Glob(pjoin(subdir, ext[1:]))
else:
matches += env.Glob(pjoin(subdir, '*.%s' % ext))
return matches
def psplit(s):
"""
Split a path given as a string into a list.
This is the inverse of os.path.join.
"""
s = s.strip('/\\')
head, tail = os.path.split(s)
path = [tail]
while head:
head, tail = os.path.split(head)
path.append(tail)
path.reverse()
return path
def subdirs(path):
""" Get the subdirectories of a specified directory """
for subdir in os.listdir(path):
dirpath = pjoin(path, subdir)
if os.path.isdir(dirpath):
yield subdir
def stripDrive(s):
"""
Remove a Windows drive letter specification from a path.
"""
if len(s) > 1 and s[1] == ':':
return s[2:]
else:
return s
def which(program):
""" Replicates the functionality of the 'which' shell command """
def is_exe(fpath):
for ext in ('', '.exe', '.bat'):
if os.path.exists(fpath + ext):
return os.access(fpath + ext, os.X_OK)
return False
fpath, fname = os.path.split(program)
if fpath:
if is_exe(program):
return program
else:
for path in os.environ["PATH"].split(os.pathsep):
exe_file = os.path.join(path, program)
if is_exe(exe_file):
return exe_file
return None
optionWrapper = textwrap.TextWrapper(initial_indent=' ',
subsequent_indent=' ',
width=72)
def formatOption(env, opt):
"""
Print a nicely formatted description of a SCons configuration
option, its permitted values, default value, and current value
if different from the default.
"""
# Extract the help description from the permitted values. Original format
# is in the format: "Help text ( value1|value2 )" or "Help text"
if opt.help.endswith(')'):
parts = opt.help.split('(')
help = '('.join(parts[:-1])
values = parts[-1][:-1].strip().replace('|', ' | ')
if values == '':
values = 'string'
else:
help = opt.help
values = 'string'
# Fix the representation of boolean options, which are stored as
# Python bools, but need to be passed by the user as strings
default = opt.default
if default is True:
default = 'yes'
elif default is False:
default = 'no'
# First line: "* option-name: [ choice1 | choice2 ]"
lines = ['* %s: [ %s ]' % (opt.key, values)]
# Help text, wrapped and idented 4 spaces
lines.extend(optionWrapper.wrap(re.sub(r'\s+', ' ',help)))
# Default value
lines.append(' - default: %r' % default)
# Get the actual value in the current environment
if opt.key in env:
actual = env.subst('${%s}' % opt.key)
else:
actual = None
# Fix the representation of boolean options
if actual == 'True':
actual = 'yes'
elif actual == 'False':
actual = 'no'
# Print the value if it differs from the default
if actual != default:
lines.append(' - actual: %r' % actual)
lines.append('')
return lines
def listify(value):
"""
Convert an option specified as a string to a list, using spaces as
delimiters. Passes lists transparently.
"""
if isinstance(value, types.StringTypes):
return value.split()
else:
# Already a sequence. Return as a list
return list(value)
def removeFile(name):
""" Remove file (if it exists) and print a log message """
if os.path.exists(name):
print 'Removing file "%s"' % name
os.remove(name)
def removeDirectory(name):
""" Remove directory recursively and print a log message """
if os.path.exists(name):
print 'Removing directory "%s"' % name
shutil.rmtree(name)
def ipdb():
"""
Break execution and drop into an IPython debug shell at the point
where this function is called.
"""
from IPython.core.debugger import Pdb
from IPython.core import ipapi
ip = ipapi.get()
def_colors = ip.colors
Pdb(def_colors).set_trace(sys._getframe().f_back)
def getSpawn(env):
"""
A replacement for env['SPAWN'] on Windows that can deal with very long
commands, namely those generated when linking. This is only used when
compiling with MinGW, as SCons automatically uses a tempfile for the
MSVC link command.
Pass the return value of this function as the SPAWN keyword argument to
the Library target, e.g.:
env.SharedLibrary(..., SPAWN=getSpawn(env))
Adapted from http://www.scons.org/wiki/LongCmdLinesOnWin32
"""
if 'cmd.exe' not in env['SHELL'] or env.subst('$CXX') == 'cl':
return env['SPAWN']
try:
useShowWindow = subprocess.STARTF_USESHOWWINDOW
except AttributeError:
useShowWindow = subprocess._subprocess.STARTF_USESHOWWINDOW
def ourSpawn(sh, escape, cmd, args, environ):
newargs = ' '.join(args[1:])
cmdline = cmd + " " + newargs
startupinfo = subprocess.STARTUPINFO()
startupinfo.dwFlags |= useShowWindow
proc = subprocess.Popen(cmdline,
stdin=subprocess.PIPE,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
startupinfo=startupinfo,
shell=False,
env=environ)
data, err = proc.communicate()
rv = proc.wait()
if rv:
print "====="
print err
print "====="
return rv
return ourSpawn
def getCommandOutput(cmd, *args):
"""
Run a command with arguments and return its output.
"""
environ = dict(os.environ)
if 'PYTHONHOME' in environ:
# Can cause problems when trying to run a different Python interpreter
del environ['PYTHONHOME']
data = subprocess.check_output([cmd] + list(args), stderr=subprocess.STDOUT, env=environ)
return data.strip()
# Monkey patch for SCons Cygwin bug
# See http://scons.tigris.org/issues/show_bug.cgi?id=2664
if 'cygwin' in platform.system().lower():
SCons.Node.FS._my_normcase = lambda x: x