2011-11-10 15:09 nick * major overhaul of build system to use GNU autotools * make check now supports nearly all tests * added PECOS transport model and thermodynamics 2008-01-07 15:02 hkmoffa * test_problems/Makefile.in: Added a missing test 2008-01-07 15:00 hkmoffa * Cantera/src/transport/TransportFactory.cpp: Eliminated a solaris warning 2008-01-07 14:09 hkmoffa * test_problems/VCSnonideal/NaCl_equil/Makefile.in: Fixed an error in the Makefile.in 2008-01-07 14:05 hkmoffa * Cantera/cxx/src/Makefile.in: Fixed an error in the Makefile.in 2008-01-07 13:53 hkmoffa * Cantera/src/equil/: ChemEquil.cpp, Makefile.in, equilibrate.cpp, vcs_MultiPhaseEquil.cpp, vcs_TV.cpp, vcs_VolPhase.cpp, vcs_nasa_poly.h, vcs_prob.cpp, vcs_report.cpp, vcs_setMolesLinProg.cpp, vcs_solve.cpp, vcs_solve_TP.cpp, vcs_species_thermo.cpp: Solaris 64 bit port modifications 2008-01-07 13:17 hkmoffa * test_problems/Makefile.in: Fixed a spelling error 2008-01-07 13:07 hkmoffa * tools/doc/doxyinput/: buildcygwin.txt, configuring.txt: Doxygen update -> adding more related pages from the Cantera site 2008-01-07 08:17 hkmoffa * test_problems/ChemEquil_gri_matrix/Makefile.in: Updated Makefile to new methodology 2008-01-07 08:10 hkmoffa * tools/doc/doxyinput/bindings.txt: Added bindings 2008-01-07 08:07 hkmoffa * test_problems/Makefile.in: Deleted a directory that hasn't been checked in yet 2008-01-06 15:28 hkmoffa * tools/doc/doxyinput/: build.txt, numarray.txt: Added more documentation from the Cantera site into the cvs dox version 2008-01-06 14:38 hkmoffa * Cantera/src/thermo/: HMWSoln.h, WaterProps.cpp, WaterProps.h: Doxygen update to WaterProps 2008-01-06 12:15 hkmoffa * test_problems/python/README: updated the readme 2008-01-06 11:49 hkmoffa * configure, configure.in: Added a test dir 2008-01-06 11:48 hkmoffa * test_problems/Makefile.in: Added a test 2008-01-06 11:30 hkmoffa * test_problems/ChemEquil_red1/: Makefile.in, basopt_red1.cpp: Made the makefile.in usable from both the build and the install directory trees. 2008-01-06 11:29 hkmoffa * configure, configure.in: Added calculation of two new variables INSTALL_LIBS_DEP and RAW_LIBS_DEP These are lists of dependencies. The INSTALL_LIBS_DEP contains the dependency list for LOCAL_LIBS based on the installation directory. The RAW_LIBS_DEP contains a list of libraries without the any absolute path name. See the Chemequil_red1 Makefile.in for an example of their usage 2008-01-05 06:36 dggoodwin * CVSROOT/avail: added Graham Goldin to avail 2008-01-04 16:50 hkmoffa * Cantera/src/base/stringUtils.cpp: Added an id block 2008-01-04 16:49 hkmoffa * Cantera/src/base/ctml.h: Doxygen update 2008-01-04 16:48 hkmoffa * tools/doc/Cantera.cfg.in: Added a file 2008-01-04 16:47 hkmoffa * Cantera/src/thermo/WaterProps.h: Doxygen update -> still working on it 2008-01-04 16:36 hkmoffa * tools/doc/Cantera.cfg.in: Added a file 2008-01-04 16:36 hkmoffa * Cantera/src/thermo/phasereport.cpp: Doxygen update: commented routines 2008-01-04 16:22 hkmoffa * Cantera/src/base/utilities.h: Doxygen update. Eliminated some warnings 2008-01-04 15:07 hkmoffa * Cantera/src/equil/: vcs_MultiPhaseEquil.cpp, vcs_MultiPhaseEquil.h, vcs_VolPhase.cpp, vcs_internal.h, vcs_prob.cpp: took out all references to cantera/kernel and kernel in include paths. It was getting too confusing and counterproductive 2008-01-04 14:16 hkmoffa * Makefile.in: Added - in front of some remove and clean commands. this causes the script not to fail if there is an error executing those commands. 2008-01-04 13:58 hkmoffa * test_problems/python/Makefile.in: Added the tut4 test problem. 2008-01-04 13:44 hkmoffa * test_problems/python/: Makefile.in, flame1_blessed.csv, flame1_blessed_linux.csv, runtest: Added flame1 test in its own directory 2008-01-04 13:16 hkmoffa * test_problems/python/Makefile.in: Adding in another test problem 2008-01-03 17:12 hkmoffa * test_problems/python/Makefile.in: Added tut1 python tutorial to test suite 2008-01-03 16:21 hkmoffa * Cantera/cxx/include/Cantera.h: Guarded against CANTERA_APP being defined previously 2008-01-03 16:19 hkmoffa * Cantera/src/equil/vcs_internal.h: Added support for use as an CANTERA_APP 2008-01-03 15:52 hkmoffa * win32/vc8/: cantera.sln, SetupCantera/SetupCantera.vdproj, cti2ctml/.cvsignore, cti2ctml/cti2ctml.vcproj: ct8 update. It's basically working now. 2008-01-03 15:32 hkmoffa * win32/vc8/: cantera.sln, SetupCantera/SetupCantera.vdproj, base_h/.cvsignore, base_h/base_h.vcproj, base_h/docopy.cmd: Copy .h files project -> may be temporary 2008-01-03 14:29 hkmoffa * Cantera/matlab/cantera/.cvsignore: Added files 2008-01-03 13:38 hkmoffa * Cantera/src/equil/: Makefile.in, vcs_MultiPhaseEquil.h, vcs_dbocls.c, vcs_dbolsm.c, vcs_dmout.c, vcs_inest.cpp, vcs_ivout.c, vcs_linmaxc.cpp, vcs_solve.h, vcs_xerror.c: got the Linear programming routines to work within the Cantera directory. I had forgot to include several files. You can now turn these on via a Makefile flag 2008-01-03 10:54 hkmoffa * tools/testtools/csvdiff.cpp: Changes due to warnings from msft vc8 2008-01-03 10:53 hkmoffa * tools/src/ck2cti.cpp: Added std:: modifier 2008-01-03 10:52 hkmoffa * Cantera/clib/src/ctbdry.cpp: Changed include directory path format to new format 2008-01-03 10:49 hkmoffa * Cantera/src/numerics/IDA_Solver.h: fixed mismatch between declaration and definition added std:: statements. 2008-01-03 10:49 hkmoffa * Cantera/src/numerics/DASPK.h: Addes std:: modifiers 2008-01-03 10:48 hkmoffa * Cantera/src/numerics/DAE_Solver.h: Fixed mismatch between declaration and definition 2008-01-03 10:47 hkmoffa * Cantera/src/base/utilities.h: Added pragmas 2008-01-03 10:46 hkmoffa * Cantera/src/kinetics/GasKineticsWriter.h: Added some std:: modifiers 2008-01-03 10:45 hkmoffa * Cantera/src/converters/: ck2ctml.cpp, ck2ctml.h: changed include directory path statements. 2008-01-03 10:44 hkmoffa * Cantera/src/equil/vcs_linmaxc.cpp: Added a missing namespace statement 2008-01-03 10:44 hkmoffa * Cantera/src/equil/vcs_nasa_poly.cpp: added pragmas to get rid of warnings. 2008-01-03 10:43 hkmoffa * Cantera/src/equil/vcs_prob.cpp: Got rid of strcasecmp added pragmas changed ifdefs around 2008-01-03 10:42 hkmoffa * Cantera/src/equil/vcs_solve_TP.cpp: Added pragrams to get rid of msft vc warnings. 2008-01-03 10:41 hkmoffa * Cantera/src/equil/: vcs_VolPhase.cpp, vcs_MultiPhaseEquil.cpp: Changed the ifdef blocks around 2008-01-03 10:40 hkmoffa * Cantera/src/equil/vcs_species_thermo.cpp: updates due to msft vc8 port 2008-01-03 10:39 hkmoffa * win32/: README, vc7/cantera.sln, vc7/configure.vc++, vc8/cantera.sln, vc8/cantera_no_sundials.sln, vc8/csvdiff/.cvsignore, vc8/csvdiff/csvdiff.vcproj, vc8/ctmatlab/.cvsignore, vc8/ctmatlab/ctmatlab.vcproj, vc8/ctmatlab/runmlab.cmd: Incremental update to vc8 2008-01-03 10:36 hkmoffa * tools/testtools/csvdiff.cpp: Untested mods for windows 2008-01-03 10:03 hkmoffa * win32/vc8/: .cvsignore, ck2cti/.cvsignore, ck2cti/ck2cti.vcproj, clib/.cvsignore, clib/clib.vcproj, config_h/.cvsignore, config_h/config_h.vcproj, config_h/docopy.cmd, f2c_math/.cvsignore, f2c_math/f2c_math.vcproj, transport/.cvsignore, transport/transport.vcproj: Incremental commit of vc8 2008-01-03 09:57 hkmoffa * win32/vc8/: Sundials/CVODES/.cvsignore, Sundials/CVODES/CVODES.vcproj, Sundials/NVEC_SER/.cvsignore, Sundials/NVEC_SER/NVEC_SER.vcproj, Sundials/SUNDIALS_SHARED/.cvsignore, Sundials/SUNDIALS_SHARED/SUNDIALS_SHARED.vcproj, f2c_blas/.cvsignore, f2c_blas/f2c_blas.vcproj, numerics/.cvsignore, numerics/numerics.vcproj, tpx/.cvsignore, tpx/tpx.vcproj, zeroD/.cvsignore, zeroD/zeroD.vcproj: Incremental update of vc8 directory 2008-01-03 09:40 hkmoffa * win32/vc8/: ctpython/.cvsignore, ctpython/ctpython.vcproj, ctpython/runpython.cmd, equil/.cvsignore, equil/equil.vcproj, f2c_libs/.cvsignore, f2c_libs/f2c_libs.vcproj, kinetics/.cvsignore, kinetics/kinetics.vcproj, oneD/.cvsignore, oneD/oneD.vcproj, spectra/.cvsignore, spectra/spectra.vcproj: Incremental update of vc8 directory 2008-01-03 09:30 hkmoffa * win32/vc8/: SetupCantera/.cvsignore, SetupCantera/SetupCantera.vdproj, SetupCantera/SetupCanteraLite.vdproj, converters/.cvsignore, converters/converters.vcproj, f2c_lapack/.cvsignore, f2c_lapack/f2c_lapack.vcproj, thermo/.cvsignore, thermo/thermo.vcproj: Incrementally putting vc8 in 2008-01-03 09:17 hkmoffa * win32/vc8/: cantera.sln, prepreconfig.vc++, base/.cvsignore, base/base.vcproj: Starting to check in vc8 directory for vc++ 2005 compiler 2008-01-02 15:35 hkmoffa * Cantera/src/equil/: vcs_inest.cpp, vcs_setMolesLinProg.cpp: compiler errors in an alternate ifdef block. 2008-01-02 14:41 hkmoffa * Cantera/src/thermo/State.h: Added pragmas to reduce warnings. 2008-01-02 14:39 hkmoffa * Cantera/src/thermo/: DebyeHuckel.cpp, HMWSoln_input.cpp: Took strcasecmp out of code, since it's not in VC++ 2008-01-02 10:22 hkmoffa * Cantera/src/base/: ct2ctml.cpp, misc.cpp, stringUtils.cpp, xml.cpp: Added more pragma disables for removing VC++ compiler warnings. 2008-01-02 09:01 hkmoffa * Cantera/src/equil/: MultiPhaseEquil.cpp, vcs_MultiPhaseEquil.cpp: Added WITH_ELECTROLYTES in several places. Haven't checked to see whether the code compiles with Electrolytes off yet, however. 2008-01-01 17:08 hkmoffa * win32/vc7/prepreconfig.vc++: Added a new version of this file. 2008-01-01 17:07 hkmoffa * .cvsignore: Added more files. 2008-01-01 15:57 hkmoffa * win32/vc7/base/: .cvsignore, base.vcproj: Starting the laborious process of getting the ms vc .NET compile up to date 2008-01-01 15:52 hkmoffa * tools/doc/doxyinput/: initthermo.txt, winbuild.txt: Added a reference to the sourceforge windows build procedure doc. 2008-01-01 14:48 hkmoffa * test_problems/: ChemEquil_ionizedGas/Makefile.in, VCSnonideal/NaCl_equil/runtest, VCSnonideal/NaCl_equil/runtestd, cathermo/DH_graph_1/runtest, cathermo/DH_graph_NM/runtest, cathermo/DH_graph_Pitzer/runtest, cathermo/DH_graph_acommon/runtest, cathermo/DH_graph_bdotak/runtest, cathermo/HMW_dupl_test/runtest, cathermo/HMW_graph_CpvT/runtest, cathermo/HMW_graph_GvI/runtest, cathermo/HMW_graph_GvT/runtest, cathermo/HMW_graph_VvT/runtest, cathermo/HMW_test_1/runtest, cathermo/HMW_test_3/runtest, cathermo/stoichSubSSTP/runtest: Changes to shell scripts when . isn't in the path 2008-01-01 14:38 hkmoffa * test_problems/cathermo/HMW_graph_HvT/runtest: fixed error when . isn't in path 2008-01-01 11:36 hkmoffa * configure: Making sure configure is up to date with configure.in changes. 2008-01-01 11:32 hkmoffa * Cantera/user/.cvsignore: Added more ignore rules 2008-01-01 11:31 hkmoffa * Cantera/cxx/src/Makefile.in: Added Makefile dep on object files. 2008-01-01 11:31 hkmoffa * Cantera/clib/src/Makefile.in: Added deps 2008-01-01 11:30 hkmoffa * Cantera/python/Makefile.in: Used the LOCAL_LIBS_DEP configure variable. 2008-01-01 11:27 hkmoffa * ext/f2c_blas/Makefile.in: Added dependency on makefile 2008-01-01 11:25 hkmoffa * ext/: f2c_lapack/Makefile.in, f2c_math/Makefile.in, cvode/Makefile.in, f2c_libs/Makefile.in: Added dependency on Makefile 2008-01-01 11:25 hkmoffa * ext/lapack/Makefile.in: Added dependencies on Makefile. 2008-01-01 11:24 hkmoffa * ext/tpx/: CarbonDioxide.cpp, Makefile.in, RedlichKwong.cpp, Sub.cpp: Took out unused variables. 2008-01-01 11:21 hkmoffa * ext/math/Makefile.in: Added more dependencies. 2008-01-01 11:19 hkmoffa * Cantera/user/Makefile.in: Updated the makefile and added dependencies. 2008-01-01 11:18 hkmoffa * Cantera/src/zeroD/Makefile.in: Added more dependencies 2008-01-01 11:18 hkmoffa * Cantera/src/thermo/Makefile.in: Added more dependencies. 2008-01-01 11:16 hkmoffa * Cantera/src/converters/: Makefile.in, newThermoReading.txt: Added new dependencies. 2008-01-01 11:14 hkmoffa * Cantera/src/: equil/Makefile.in, oneD/Makefile.in: Added more dependencies. 2008-01-01 11:13 hkmoffa * Cantera/src/: kinetics/Makefile.in, numerics/Makefile.in, transport/Makefile.in: Added more dependencies 2008-01-01 11:11 hkmoffa * Cantera/src/base/Makefile.in: Added more dependency checking. Object files now depend on Makefile. 2008-01-01 11:09 hkmoffa * Cantera/src/base/ct_defs.h: Doxygen addition to elim a doxygen warning. 2008-01-01 11:08 hkmoffa * ext/tpx/: .cvsignore, Makefile.in: added more dependency checks 2008-01-01 11:06 hkmoffa * configure.in: Added a LOCAL_LIBS_DEP variable, that may be used to establish library dependencies in executables for the LOCAL_LIBS variable. 2008-01-01 11:04 hkmoffa * Cantera/cxx/include/: Cantera.h, Interface.h: Fixed some compilation errors that arose from Interface.h, due to namespace changes. Added xml.h to Cantera.h 2008-01-01 11:01 hkmoffa * test_problems/surfkin/: Makefile.in, surfdemo.cpp: Added Cantera_CXX namespace 2008-01-01 09:13 hkmoffa * Cantera/src/thermo/: .cvsignore, Makefile.in: Addition to the %.d dependencies: I'm adding Makefile and %.o to the dependency for %.d. This alleviates somes problems with .o files not being rebuilt when they should have been. Adding in the Makefile means that .d files are remade whenever configure is run. This isn't a total solution for what happens when defines change. However, it's a start. Adding in %.o captures changes in .h files that the .cpp files depends on. 2008-01-01 08:54 hkmoffa * data/inputs/.cvsignore: Added an xml file, silane.xml 2008-01-01 08:51 hkmoffa * Cantera/src/oneD/Makefile.in: Fixed an error in a depends rule. 2007-12-28 15:29 hkmoffa * preconfig: Added comments to the file. 2007-12-28 15:24 hkmoffa * Cantera/python/Cantera/constants.py: Added an import math command. 2007-12-28 06:39 dggoodwin * Cantera/python/Cantera/: constants.py, schem.py: removed deprecated file 2007-12-27 18:19 hkmoffa * configure, configure.in: 2 changes added libctf2c to the LCXX_END_LIBS variable when it is needed. f2c is more of a system level variable. Changed the default PIC setting to empty for cygwin environments. 2007-12-27 18:16 hkmoffa * Cantera/src/base/ct2ctml.cpp: Changed the pypath() routine to reflect its own documentation. If it fails to find PYTHON_CMD in the environment, it will now return the string python, and not throw an error. WIth this change PYTHON_CMD doesn't have to be set in the user's environment. Instead Cantera will fall back to using the user's default path to find the executable, python. 2007-12-27 17:53 hkmoffa * test_problems/min_python/negATest/Makefile.in: Added .depends to all target 2007-12-27 17:32 hkmoffa * test_problems/VCSnonideal/NaCl_equil/: runtest, runtestd: Made the csvdiff commands have a relative path 2007-12-27 17:00 hkmoffa * Cantera/src/transport/.cvsignore: Added .d files 2007-12-27 16:58 hkmoffa * Cantera/python/src/ctfunc_methods.cpp: Removed unused variables. 2007-12-27 16:51 hkmoffa * Cantera/src/converters/.cvsignore: Added .d files 2007-12-27 16:51 hkmoffa * Cantera/clib/src/Makefile.in: Made the depends rule like the cxx rule. 2007-12-27 16:43 hkmoffa * Cantera/src/numerics/Makefile.in: Made the depends rule like the cxx rule. 2007-12-27 16:38 hkmoffa * Cantera/cxx/src/.cvsignore: Added .d files 2007-12-27 16:37 hkmoffa * Cantera/cxx/src/Makefile.in: Made depends rule like the cxx rule. 2007-12-27 16:23 hkmoffa * Cantera/src/converters/Makefile.in: Made the depends rule like the cxx rule 2007-12-27 16:16 hkmoffa * Cantera/src/: numerics/Makefile.in, spectra/Makefile.in: Made the depends rule like the cxx rule. 2007-12-27 16:15 hkmoffa * Cantera/src/kinetics/Makefile.in: Made the depends rule the same as the cxx rule. 2007-12-27 16:10 hkmoffa * Cantera/src/transport/Makefile.in: Changed the depends rule to be like the cxx rule 2007-12-27 16:06 hkmoffa * Cantera/src/thermo/Makefile.in: Made depends rule like the cxx rule. 2007-12-27 15:58 hkmoffa * Cantera/src/zeroD/Makefile.in: Made depends rule like the compile rule 2007-12-27 15:50 hkmoffa * Cantera/src/oneD/.cvsignore: Added .d files 2007-12-27 15:49 hkmoffa * Cantera/src/oneD/Makefile.in: Fixed depends rule to be like the c++ rule. 2007-12-27 15:38 hkmoffa * Cantera/src/base/Makefile.in: Made the depends rule take CXX_FLAGS just as the regular compile rule does. 2007-12-27 15:35 hkmoffa * ext/f2c_math/Makefile.in: Made CFLAGS take the PIC_FLAG argument, just as CXXFLAGS does. 2007-12-27 11:09 hkmoffa * Cantera/src/thermo/: Nasa9Poly1.cpp, Nasa9Poly1.h, Nasa9PolyMultiTempRegion.cpp, Nasa9PolyMultiTempRegion.h, SpeciesThermo.h, ThermoPhase.cpp, speciesThermoTypes.h: doxygen update added Nasa9 connections and cleaned up warning messages. 2007-12-27 11:08 hkmoffa * tools/doc/Cantera.cfg.in: Added doxygen connection for NASA9 polynomials 2007-12-20 18:58 hkmoffa * Cantera/cxx/include/GRI30.h, Cantera/cxx/include/IdealGasMix.h, Cantera/cxx/include/Metal.h, Cantera/cxx/include/PureFluid.h, Cantera/cxx/include/importPhase.h, Cantera/cxx/src/Makefile.in, Cantera/cxx/src/cxxutils.cpp, Cantera/src/thermo/MolalityVPSSTP.cpp, Cantera/src/thermo/MolalityVPSSTP.h, Cantera/src/thermo/PureFluidPhase.cpp, Cantera/src/thermo/PureFluidPhase.h, Cantera/src/thermo/ThermoPhase.cpp, Cantera/src/thermo/ThermoPhase.h, Cantera/src/thermo/phasereport.cpp, test_problems/VCSnonideal/NaCl_equil/README, test_problems/VCSnonideal/NaCl_equil/good_dout.txt, test_problems/VCSnonideal/NaCl_equil/good_out.txt, test_problems/VCSnonideal/NaCl_equil/runtest: Made the report function a virtual function within the ThermoPhase class. This means that the function can be modified depending on the inheritance. This allows for the printout of molalities and pH's for liquid phases where appropriate. Took out a duplicate function, report(), in the Cantera namespace. There was one in cxxutils.cpp and one in phasereport.cpp. 2007-12-20 16:42 hkmoffa * Cantera/src/thermo/ThermoPhase.h: Fixed a typo 2007-12-20 15:47 hkmoffa * test_problems/: Makefile.in, VCSnonideal/.cvsignore, VCSnonideal/Makefile.in, cathermo/stoichSubSSTP/NaCl_Solid.xml: Committing a few more files to get vcsnonideal test problem to work. 2007-12-20 15:46 hkmoffa * test_problems/VCSnonideal/NaCl_equil/: .cvsignore, HMW_NaCl.xml, Makefile.in, NaCl_Solid.xml, README, gas.xml, good_dout.txt, good_out.txt, nacl_equil.cpp, runtest, runtestd, vcs_equilibrate_blessed.csv: commited a test problem. 2007-12-20 15:42 hkmoffa * configure, configure.in: Added test directories for VCSnonideal 2007-12-20 15:29 hkmoffa * Cantera/src/equil/vcs_MultiPhaseEquil.cpp: Greatly reduced the print levels. 2007-12-20 14:07 hkmoffa * Cantera/src/thermo/ThermoFactory.cpp: Bug fix to the newPhase function. 2007-12-20 12:39 hkmoffa * Cantera/src/thermo/: HMWSoln.h, IdealSolidSolnPhase.h, StoichSubstanceSSTP.cpp, StoichSubstanceSSTP.h, SurfPhase.cpp, SurfPhase.h, ThermoFactory.h: Added a few constructor routines, directly from file strings. 2007-12-19 14:58 hkmoffa * configure, configure.in: Bug fix to make sure Cantera compiles with and without VCSnonideal 2007-12-19 14:55 hkmoffa * Cantera/src/equil/equilibrate.cpp: Bug fix to make sure Cantera compiles without VCSnonideal 2007-12-19 14:41 hkmoffa * config.h.in: Added the WITH_VCSNONIDEAL flag 2007-12-19 14:40 hkmoffa * Cantera/src/thermo/: Makefile.in, ThermoFactory.cpp: Added a few ifdefs for WITH_ options. 2007-12-19 14:23 hkmoffa * Cantera/src/equil/Makefile.in: Attached Makefile to configure options for VCSnonideal 2007-12-19 14:22 hkmoffa * preconfig: Added WITH_VCSNONIDEAL preconfig line, setting to default off. 2007-12-19 14:21 hkmoffa * configure, configure.in: Adding in my output about what gets compiled and what doesn't. VCSNONIDEAL is now an optional compile 2007-12-19 13:41 hkmoffa * preconfig: Changed WITH_ADSORBATE to be a setable variable. 2007-12-19 13:38 hkmoffa * Cantera/src/equil/: .cvsignore, equilibrate.cpp: formatting changes. 2007-12-19 13:19 hkmoffa * Cantera/src/equil/: Makefile.in, MultiPhaseEquil.cpp, MultiPhaseEquil.h, equilibrate.cpp, vcs_DoubleStarStar.cpp, vcs_DoubleStarStar.h, vcs_Exception.cpp, vcs_Exception.h, vcs_Gibbs.cpp, vcs_IntStarStar.cpp, vcs_IntStarStar.h, vcs_MultiPhaseEquil.cpp, vcs_MultiPhaseEquil.h, vcs_SpeciesProperties.cpp, vcs_SpeciesProperties.h, vcs_TP.cpp, vcs_TV.cpp, vcs_VolPhase.cpp, vcs_VolPhase.h, vcs_dbocls.c, vcs_dbols.c, vcs_defs.h, vcs_dvout.c, vcs_elem.cpp, vcs_elem_rearrange.cpp, vcs_funcVtot.cpp, vcs_inest.cpp, vcs_internal.h, vcs_linmaxc.cpp, vcs_nasa_poly.cpp, vcs_nasa_poly.h, vcs_nondim.cpp, vcs_prep.cpp, vcs_prob.cpp, vcs_prob.h, vcs_rearrange.cpp, vcs_report.cpp, vcs_root1d.cpp, vcs_rxnadj.cpp, vcs_setMolesLinProg.cpp, vcs_solve.cpp, vcs_solve.h, vcs_solve_TP.cpp, vcs_species_thermo.cpp, vcs_species_thermo.h, vcs_timer_generic.cpp, vcs_util.cpp: Added vcs_nonideal, another equilibrium solver that can handle nonideal thermo multiphase systems. 2007-12-19 09:08 hkmoffa * Cantera/src/thermo/: GeneralSpeciesThermo.cpp, SpeciesThermoFactory.cpp, WaterSSTP.cpp: Bug fixes for compile case where Adorbate is not included. 2007-12-19 09:06 hkmoffa * configure.in: Added more table info on what gets compiled in. 2007-12-19 09:03 hkmoffa * Cantera/src/thermo/: DebyeHuckel.cpp, IdealSolidSolnPhase.cpp, IdealSolidSolnPhase.h, ThermoFactory.cpp, mix_defs.h: Bug fix for instantiation of these thermo models via the ThermoFactory approach. 2007-12-19 09:00 hkmoffa * test_problems/multiGasTransport/Makefile.in: Added .depends to the make all rule. 2007-12-19 08:58 hkmoffa * test_problems/min_python/minDiamond/Makefile.in: Added .depends to the Make all rule. 2007-12-19 08:50 hkmoffa * test_problems/multiGasTransport/: multiGasTransport.cpp, output_blessed.txt: Changed some formatting to 4 digits from 5. I was having trouble with the last digit changing. 2007-12-19 08:16 hkmoffa * Cantera/src/thermo/SimpleThermo.h: Took out a write statement that was causing test failures. 2007-12-19 07:58 hkmoffa * examples/cxx/: .cvsignore, Makefile.in: Fixed the depends rule for this test case 2007-12-19 07:32 hkmoffa * Cantera/python/ctml_writer.py: Added an id tag to the file 2007-12-17 18:53 dggoodwin * Cantera/src/spectra/: LineBroadener.cpp, LineBroadener.h, rotor.cpp: added LineBroadener 2007-12-17 18:41 dggoodwin * Cantera/fortran/src/cantera_iface.f90: added cantera_iface 2007-12-17 12:29 hkmoffa * test_problems/CpJump/output_blessed.txt: Rebaselined -> soln changed in 5th digit 2007-12-17 12:25 hkmoffa * test_problems/multiGasTransport/output_blessed.txt: Rebaselined -> changed in 5th dig due to new constants 2007-12-17 12:24 hkmoffa * test_problems/mixGasTransport/output_blessed.txt: Rebaselined 2007-12-17 12:22 hkmoffa * test_problems/NASA9poly_test/output_blessed.txt: Rebaselined -> roundoff error 2007-12-17 06:22 dggoodwin * Cantera/src/base/ct_defs.h: updated constants to 2006 CODATA recommendations 2007-12-15 09:18 dggoodwin * Cantera/src/spectra/: Makefile.in, rotor.cpp, rotor.h: adding support for spectroscopy 2007-12-15 09:15 dggoodwin * configure, configure.in, preconfig, Cantera/cxx/Makefile.in, Cantera/fortran/src/Makefile.in, Cantera/fortran/src/cantera.f90, Cantera/fortran/src/cantera_funcs.f90, Cantera/fortran/src/cantera_kinetics.f90, Cantera/fortran/src/cantera_thermo.f90, Cantera/fortran/src/fct.cpp, Cantera/fortran/src/fct_interface.f90, Cantera/python/ctml_writer.py, Cantera/python/Cantera/constants.py, Cantera/python/Cantera/liquidvapor.py, Cantera/src/Makefile.in, Cantera/src/base/ct_defs.h, Cantera/src/base/misc.cpp, Cantera/src/base/units.h, Cantera/src/thermo/GeneralSpeciesThermo.cpp, Cantera/src/thermo/PureFluidPhase.h, Cantera/src/thermo/SimpleThermo.h, Cantera/src/thermo/SpeciesThermoFactory.cpp, Cantera/src/thermo/SpeciesThermoInterpType.h, Cantera/src/thermo/ThermoFactory.cpp, Cantera/src/thermo/mix_defs.h, Cantera/src/thermo/speciesThermoTypes.h, Cantera/src/transport/Makefile.in, Cantera/src/transport/TransportBase.h, Cantera/src/transport/TransportFactory.cpp, data/inputs/air.cti: added spectroscopy support 2007-12-04 10:10 hkmoffa * examples/cxx/: Makefile.in, kinetics_example1.cpp, kinetics_example3.cpp, rxnpath_example1.cpp: Updated the Makefile and took out ifdefs. 2007-12-04 09:45 hkmoffa * test_problems/Makefile.in: Added cxx_ex test back in. This test had been failing. It now works due to my recent checkin. The test is important since it seems to have coverage over areas which aren't covered by other test problems. 2007-12-04 09:37 hkmoffa * Cantera/src/zeroD/Reactor.cpp: Decreased the tolerance in the setState_UV() routine. This tolerance is needed for the accurate calculation of Jacobians. 2007-12-04 09:34 hkmoffa * Cantera/src/thermo/ThermoPhase.cpp: Fixed an error in setState_UV() and similar routines that was occasionally causing numerical errors in the calculation of Jacobians. If the tolerances to these routines were set too low for calculation of Jacobians, then the dt*=1.5 logic was causing the evaluation to kick out of the routine with an incorrect deltaU value on the first iteration. This meant that the numerically derived Jacobian entry was off by a factor of 50%. 2007-12-03 14:04 hkmoffa * Cantera/python/ctml_writer.py: Bug Fixes to ctml_writer.py. There were some undefined symbols, 'eV' and 'ElectronMass' that were causing all cti to ctml conversions processes using python to fail. This checkin defines these symbols. The test suite now passes. 2007-12-03 13:46 hkmoffa * Cantera/src/thermo/SemiconductorPhase.cpp: Eliminated a doulbe addition case 2007-11-26 14:45 dggoodwin * configure, configure.in, preconfig, Cantera/python/Cantera/ReactorNet.py, Cantera/python/examples/equilibrium/multiphase_plasma.py, Cantera/python/src/pycantera.cpp, Cantera/src/base/ct2ctml.cpp, Cantera/src/thermo/SemiconductorPhase.cpp, Cantera/src/thermo/SemiconductorPhase.h, Cantera/src/thermo/mix_defs.h: added SemiconductorPhase 2007-11-11 15:27 hkmoffa * test_problems/ChemEquil_gri_matrix/gri_matrix.cpp: Added a solver variable. 2007-11-10 08:31 dggoodwin * configure, configure.in, tools/templates/f90/demo.mak.in: fixes to F90 interface 2007-10-29 16:50 hkmoffa * test_problems/: CpJump/Makefile.in, multiGasTransport/Makefile.in: Fixed a couple of errors in the Makefiles. Special cased lapack and blas, and took out a recursive variable defn. 2007-10-29 16:48 hkmoffa * test_problems/NASA9poly_test/: Makefile.in, NASA9poly_test.cpp, output_blessed.txt: Updated the test, by adding more output 2007-10-29 07:01 dggoodwin * test_problems/NASA9poly_test/Makefile.in: fixed dependency on libctlapack and libctblas 2007-10-28 12:08 hkmoffa * ext/f2c_libs/: arith.h, signal1.h, sysdep1.h: These files are autogenerted during the makefile process. Therefore, they don't need to be in the cvs system. 2007-10-26 08:38 hkmoffa * test_problems/: Makefile.in, CpJump/.cvsignore, CpJump/CpJump.cpp, CpJump/Makefile.in, CpJump/README.txt, CpJump/bad_air.cti, CpJump/bad_air.xml, CpJump/output_blessed.txt, CpJump/runtest: Added a test CpJump that stresses the new setState_HP() algorithm. The old undamped newton's method fails on this problem. 2007-10-26 08:37 hkmoffa * configure, configure.in: Added a test directory. 2007-10-26 08:34 hkmoffa * Cantera/src/thermo/: SpeciesThermoFactory.cpp, ThermoPhase.cpp, ThermoPhase.h: Upgraded algorithm for setState_HP() and friends. Replaced the bare Newton's method with a root finder. This algorithm is tolerant of step jumps in Thermo parameters at the temperature boundaries. The algorithm also has an initial treatment of spinodals. Basically, if we are currently liquid, we want to stay liquid. If we are currently gas, we want to stay gas. 2007-10-19 10:11 hkmoffa * data/inputs/.cvsignore: Added generated file to the ignore list 2007-10-19 09:59 hkmoffa * data/inputs/: .cvsignore, Makefile.in, mkxml.in: Changed the makefile to use the BUILDBIN variable. The converter programs are no longer in ../bin. 2007-10-19 09:54 hkmoffa * data/inputs/mkxml: This is now a created file. 2007-10-19 09:48 hkmoffa * data/inputs/air.cti: Minor formatting changes. 2007-10-19 08:52 hkmoffa * tools/doc/python/.cvsignore: Added a .cvsignore file 2007-10-19 08:50 hkmoffa * configure, .cvsignore, configure.in: Added mkxml to the list of "made" files 2007-10-12 14:36 hkmoffa * Cantera/src/equil/: ChemEquil.cpp, ChemEquil.h: Changes due to more testing involving UV equil runs on a NASA9 mechanism. -> Changed the damping strategy -> Upgraded the initial find-temperature strategy -> changed the solution tolerance requirements -> sometimes it was getting hung up at the end. 2007-10-12 14:33 hkmoffa * test_problems/ChemEquil_ionizedGas/: output_blessed.txt, runtest, table_blessed.csv: Rebaselined due to ChemEquil changes. 2007-10-11 14:17 hkmoffa * Cantera/src/equil/: ChemEquil.cpp, Makefile.in: Changed tolerances due to a user problem (involving ionized gases) failing. 2007-10-11 14:16 hkmoffa * test_problems/ChemEquil_ionizedGas/: output_blessed.txt, table_blessed.csv: Rebaselined, answer changed because of change in alg. 2007-10-11 09:03 hkmoffa * Cantera/src/equil/: BasisOptimize.cpp, ChemEquil.cpp, ChemEquil.h, Makefile.in, MultiPhase.h: Changed the Element potential algorithm to accept temperatures that venture out of bounds more. There was a user issue where this cropped up, and triggered a false convergence error. Upped the debug printouts on this issue too. 2007-10-11 09:01 hkmoffa * test_problems/: ChemEquil_ionizedGas/Makefile.in, ChemEquil_ionizedGas/ionizedGasEquil.cpp, ChemEquil_red1/Makefile.in, ChemEquil_red1/basopt_red1.cpp: Updated these tests to use new names of the DEFINES 2007-10-10 08:14 hkmoffa * data/inputs/: airNASA9.cti, airNASA9.inp, airNASA9.xml: Added files for NASA9 parameterization of air up to 20000K. The original data for these is in the thermo directory. 2007-10-10 07:59 hkmoffa * data/thermo/airDataNASA9.dat: Added an example of a NASA9 data file to the Cantera distribution 2007-10-09 14:02 hkmoffa * Cantera/src/thermo/: Nasa9Poly1.cpp, Nasa9PolyMultiTempRegion.cpp: Fixed an error in the entropy calculation for NASA9 polynomials. 2007-10-09 08:23 hkmoffa * Cantera/python/ctml_writer.py: Fixed a bug in the conversion of files from cti to ctml format, having to do with NASA9 polynomials. Added a comma to the NASA9 floatArray block. 2007-10-05 19:24 hkmoffa * Cantera/src/thermo/GeneralSpeciesThermo.cpp: Fixed an error that affected the calculation of transport properties for mechanisms with all NASA9 species. The max and min temperatures weren't being computed, which caused NaN's to appear during the transport property data fitting procedure. 2007-10-01 17:50 hkmoffa * test_problems/cathermo/: HMW_dupl_test/HMW_NaCl_sp1977_alt.xml, HMW_graph_CpvT/HMW_NaCl_sp1977_alt.xml, HMW_graph_GvI/HMW_NaCl.xml, HMW_graph_GvT/HMW_NaCl_sp1977_alt.xml, HMW_graph_HvT/HMW_NaCl_sp1977_alt.xml, HMW_graph_VvT/HMW_NaCl_sp1977_alt.xml, HMW_test_3/HMW_NaCl_tc.xml: Changed the xml files to be update to date with the new PITZER_TEMP_COMPLEX1 format. 2007-10-01 17:49 hkmoffa * Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h, HMWSoln_input.cpp: Changed the PITZER_TEMP_COMPLEX1 parameterization to use 5 coefficients for beta1 and 5 coefficients for beta2. They are now the same as beta0 and Cphi. All xml blocks using this parameterization must be modified accordingly. 2007-09-30 08:58 hkmoffa * Cantera/src/thermo/HMWSoln.h: Fixed a typo 2007-09-30 08:57 hkmoffa * Cantera/python/Cantera/.cvsignore: Added an ignore file 2007-09-27 15:35 dggoodwin * apps/bvp/: AxiStagnBVP.cpp, AxiStagnBVP.h, BoundaryValueProblem.h, stagnation.mak: initial import 2007-09-14 09:05 hkmoffa * Cantera/src/thermo/: Nasa9Poly1.cpp, Nasa9Poly1.h, Nasa9PolyMultiTempRegion.cpp, Nasa9PolyMultiTempRegion.h: Fixed a bug in reporting parameters for Nasa9MultiTempRegion Changed the Nasa9 reporting parameters routine to be compatible with the multi temperature region reporting parameters. 2007-09-14 07:19 hkmoffa * Cantera/python/ctml_writer.py: Missed a file in the NASA9 commit of yesterday 2007-09-13 08:46 hkmoffa * Cantera/src/converters/Makefile.in: Added a missing file to the list of objects 2007-09-13 08:12 hkmoffa * test_problems/: Makefile.in, NASA9poly_test/.cvsignore, NASA9poly_test/Makefile.in, NASA9poly_test/NASA9poly_test.cpp, NASA9poly_test/gasNASA9.xml, NASA9poly_test/output_blessed.txt, NASA9poly_test/runtest, nasa9_reader/.cvsignore, nasa9_reader/Makefile.in, nasa9_reader/runtest.in, nasa9_reader/sample.inp, nasa9_reader/sample.xml, nasa9_reader/sampleData.inp, nasa9_reader/sample_blessed.cti: Added 2 new tests associated with NASA9 polynomial capability. 2007-09-13 08:07 hkmoffa * configure, configure.in: Added new directories for new test problems. 2007-09-13 08:05 hkmoffa * Cantera/src/: base/xml.h, converters/CKParser.cpp, converters/CKParser.h, converters/CKReader.cpp, converters/CKReader.h, converters/Makefile.in, converters/NASA9Parser.cpp, converters/Reaction.cpp, converters/Species.cpp, converters/Species.h, converters/ck2ct.cpp, converters/ckr_defs.h, converters/ckr_utils.cpp, converters/thermoFunctions.cpp, converters/writelog.cpp, converters/writelog.h, thermo/ConstCpPoly.h, thermo/GeneralSpeciesThermo.cpp, thermo/GeneralSpeciesThermo.h, thermo/Makefile.in, thermo/Mu0Poly.h, thermo/Nasa9Poly1.cpp, thermo/Nasa9Poly1.h, thermo/Nasa9PolyMultiTempRegion.cpp, thermo/Nasa9PolyMultiTempRegion.h, thermo/NasaPoly1.h, thermo/NasaPoly2.h, thermo/NasaThermo.h, thermo/ShomatePoly.h, thermo/ShomateThermo.h, thermo/SimpleThermo.h, thermo/SpeciesThermo.h, thermo/SpeciesThermoFactory.cpp, thermo/SpeciesThermoInterpType.h, thermo/SpeciesThermoMgr.h, thermo/speciesThermoTypes.h: This checkin adds the ability to read NASA9 polynomial standard states, with arbitrary number of temperature intervals, to Cantera's underlying routines. Cantera can now read fortran formatted NASA9 polynomials to create cti files The cti files can then be translated into xml files. And, the xml files can now be read into constant pressure standard state objects and used normally within the guts of Cantera. Currently, the standard state just links into the GeneralSpeciesThermo object, which means that it's calculation speed is slow. However, atm this satisfies the initial use case for this new capability. In the near future, I'll push this out to the matlab and python interfaces. 2007-09-12 15:10 hkmoffa * Cantera/clib/src/Cabinet.h: Added a config.h compiler define in, to handle incompatibilities across platforms. 2007-09-12 15:09 hkmoffa * config.h.in, configure, configure.in: Fixed linking errors on cygwin, by special casing how to handle the declaration/definition of static variables in templatized classes. There is an irreconcilable difference between cygwin and Solaris, that I handled by creating a compiler define in config.h. 2007-09-12 15:02 hkmoffa * test_problems/multiGasTransport/: multiGasTransport.cpp, output_blessed.txt: Cutoff low values so that comparisons pass between machines 2007-09-12 14:40 hkmoffa * test_problems/mixGasTransport/mixGasTransport.cpp: Fixed a parenthesis misplacement. 2007-09-11 14:00 hkmoffa * Cantera/src/thermo/HMWSoln.h: Fixed a spelling mistake. 2007-08-30 14:37 hkmoffa * configure, configure.in: Fixed the output from configure. It had erroneous errors when the matlab interface option was turned on. 2007-08-29 14:01 hkmoffa * configure, configure.in, preconfig: Changes to the treatment of the PIC environmental variable due to solaris. preconfig now sets it to null. Unless the user has set it to something nonnull, configure then resets it to -fPIC for all platforms except for Solaris, where it set to null. Solaris doesn't require -fPIC. 2007-08-29 13:52 hkmoffa * Cantera/clib/src/.cvsignore: Added a file 2007-08-29 13:51 hkmoffa * Cantera/clib/src/: Cabinet.h, ct.cpp, ctreactor.cpp: Fixed a Solaris compile issue. Solaris decided a declaration was actually a definition. So, I changed the way templated static storage is declared. It still needs to be defined once and only once on all platforms. 2007-08-29 13:48 hkmoffa * test_problems/multiGasTransport/Makefile.in: Improved the dependencies in the file. 2007-08-29 12:57 hkmoffa * Cantera/src/kinetics/: ImplicitSurfChem.cpp, solveSP.cpp, solveSP.h: Solaris Bug fix: solaris complained about the overload between ioflag as a parameter and as member data. So, I changed the member data name to m_ioflag. 2007-08-28 15:15 hkmoffa * Cantera/matlab/Makefile.in: Fixed another error in the make install command (that I created). The cantera-demos directory wasn't being populated. 2007-08-28 11:59 hkmoffa * Cantera/matlab/Makefile.in: Missed installing the main ctmethods* file. Adding it here. 2007-08-27 09:42 hkmoffa * data/thermo/.cvsignore: Added some files that will not be put into the main cantera distribution until some licensing issues are resolved. 2007-08-27 09:35 hkmoffa * Cantera/src/thermo/.cvsignore: Added tmp files to this list 2007-08-27 09:32 hkmoffa * Cantera/python/examples/flames/.cvsignore: Added a .cvsignore file for this directory. Files that get created when the python scripts are actually run from within the directory are added to the .cvsignore file. 2007-08-23 14:53 hkmoffa * Cantera/fortran/src/.cvsignore: added a file 2007-08-23 14:52 hkmoffa * configure.in: Added a directory 2007-08-23 14:51 hkmoffa * test_problems/Makefile.in: Added a test 2007-08-23 14:51 hkmoffa * test_problems/surfSolverTest/: .cvsignore, Makefile.in, haca2.cti, haca2.xml, runtest, runtest2, runtest2_d3, runtest_d3, surfaceSolver.cpp, surfaceSolver2.cpp, surfaceSolver2_blessed.out, surfaceSolver2_blessed3.out, surfaceSolver_blessed.out, surfaceSolver_blessed3.out: Added two more tests that exercise the surface solver capability. 2007-08-23 14:43 hkmoffa * Cantera/src/kinetics/: ImplicitSurfChem.cpp, ImplicitSurfChem.h, InterfaceKinetics.cpp, InterfaceKinetics.h, Makefile.in, solveSP.cpp, solveSP.h: Added a capability to solve the surface pseudosteady state problem via a damped newton's method. It also employs a false transient algorithm when far from the solution. 2007-07-31 14:14 hkmoffa * Cantera/src/transport/: TransportFactory.cpp, TransportFactory.h: Fixed the order of initializations so that it wouldn't produce a warning message. Doxygen additions. 2007-07-31 14:12 hkmoffa * Cantera/src/transport/TransportBase.h: Added a m_nDim field to the base class. It seemed like the right place to put it. Though, it's not used atm. 2007-07-31 14:11 hkmoffa * Cantera/src/transport/MixTransport.h: Doxygen update - changes to comments made pressure_ig() a const function 2007-07-31 14:08 hkmoffa * test_problems/Makefile.in: Added the multiGasTransport test 2007-07-31 14:05 hkmoffa * configure, configure.in: Added a test directory. 2007-07-31 14:04 hkmoffa * test_problems/multiGasTransport/: .cvsignore, Makefile.in, gri30.xml, multiGasTransport.cpp, output_blessed.txt, runtest: Addition of basic test for multiTransport object. This just picks an arbitrary condition, calculates all of the interfacial properties, and dumps it to an ascii file. We want to ensure that the answer doesn't change over time. 2007-07-31 13:51 hkmoffa * configure, configure.in: Added a directory 2007-07-31 13:50 hkmoffa * test_problems/Makefile.in: Added a test 2007-07-31 13:33 hkmoffa * test_problems/mixGasTransport/: .cvsignore, Makefile.in, gri30.xml, mixGasTransport.cpp, output_blessed.txt, runtest: Added a simple test that exercises the mixture gas transport object on an arbitrary point. It produces an answer. The blessed file will make sure the answer doesn't change going forward. 2007-07-31 10:28 hkmoffa * Cantera/src/transport/MixTransport.h: Fixed an interface error in getSpeciesViscosities(). This seldom used interface function needed to ensure that update_T() is called so that the temperature is current. 2007-07-27 15:21 hkmoffa * Cantera/matlab/Makefile.in: Changed the Makefile scripts so that INSTALL doesn't need to handle copying multiple files during a single invocation. 2007-07-27 13:05 hkmoffa * Cantera/src/converters/ck2ct.h: Added a str:: to a string parameter 2007-07-26 20:37 dggoodwin * Cantera/src/transport/: MMCollisionInt.cpp, TransportFactory.cpp, TransportFactory.h: made some log message writing optional 2007-07-26 20:27 dggoodwin * configure.in: changed default for @INSTALL@ back, because it was failing for MATLAB files 2007-07-26 17:32 hkmoffa * Cantera/src/transport/TransportFactory.h: Doxygen update - no code change 2007-07-26 17:25 hkmoffa * Cantera/src/transport/: MixTransport.cpp, MixTransport.h, MultiTransport.h, TransportBase.h: Doxygen update: no code changes Added a cLiquidTransport for an electrolyte transport capability under construction 2007-07-26 17:09 hkmoffa * Cantera/src/transport/: MixTransport.cpp, MixTransport.h, MultiTransport.cpp, MultiTransport.h, TransportBase.h: Doxygen update Documented the getSpeciesFluxes interface Changed a doublereal * grad_T parameter to const doublereal * grad_T parameter. 2007-07-26 14:55 hkmoffa * Cantera/src/: base/XML_Writer.h, transport/L_matrix.h, transport/MMCollisionInt.h, transport/SolidTransport.h, transport/TransportFactory.h, transport/TransportParams.h: Took out using namespace std from a couple of .h files. 2007-07-24 10:37 hkmoffa * configure, configure.in: During an out-of-the-box preconfig run, the user will unwillingly ask for a FULL python installation, but will inevitably fail because neither the numarray or numeric package has been installed. Now, a check is made during the raw preconfig run to see if the include files for the numarray package can be found. If they can't be found and the python installation option is set to default, then the python build variable is set to 1, reducing python to a minimal installation. In most cases, the raw out-of-the-box preconfig make make test steps will now work. Whereas before, there were compile errors occurring because the numarray include files were not able to be found. More information about the SUNDIALS installation is now printed out. CVS 2007-07-24 10:29 hkmoffa * preconfig: Changed the default SUNDIALS_HOME setting to blank. This coincides with what is assumed in the configure.in file, and avoids potential problems with spaces in $HOME that frequently appear on cygwin installations. 2007-07-24 10:24 hkmoffa * test_problems/min_python/negATest/runtest: Fixed path to elements.xml 2007-07-24 10:20 hkmoffa * test_problems/pureFluidTest/runtest: Fixed the path to the default location of elements.xml 2007-07-18 14:27 hkmoffa * Cantera/src/thermo/State.cpp: Fixed an error in the function setMoleFractions_NoNorm(). The error was introduced in v. 1.2 of this file on 5/4/07, and lead to bad values for output mass fractions. 2007-07-18 13:21 hkmoffa * test_problems/cathermo/: HMW_test_1/output_noD_blessed.txt, HMW_test_3/output_noD_blessed.txt: Rebaselined two files, due to textual changes in the output 2007-07-18 12:27 hkmoffa * Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h: Cropping Update -Did a better job at coming up with cropping strategy for molalalities which are used for the calculation of the activity coefficents. Without such a strategy, act coeffs may become unbounded and cause the equilibrium solver to fail. 2007-07-13 10:23 hkmoffa * configure, configure.in, preconfig: Changed the default INSTALL program from whatever autoconf found using the macro AC_PROG_INSTALL to the program config/install-sh, which was the backup option for AC_PROG_INSTALL anyway. The driving reason for this was that the default /usr/bin/install program on linux had problems when directories under $(CANTERA_ROOT)/build weren't owned by installing user. Note, this can happen in a collaborative environment when multiple people have group rw on the source/build directory. However, in general, this should help cross-platform variability issues, since there is less variability now. The user can override config/install-sh choice by setting the environmental variable INSTALL_BIN in the preconfig script. 2007-07-13 10:15 hkmoffa * Cantera/cxx/include/: Edge.h, IncompressibleSolid.h, Interface.h, Metal.h: Fixed compilation errors on solaris. Solaris picks up const and non-const differences between parent and child member functions. 2007-07-13 09:52 hkmoffa * Cantera/fortran/src/fct.cpp: Fixed a compile problem that occurred on solaris 2007-07-13 08:55 hkmoffa * Cantera/src/thermo/HMWSoln.cpp: Fixed compilation problems on solaris 2007-07-13 08:19 hkmoffa * Makefile.in: Fixed an install command, so that it only does one file at a time. 2007-07-13 07:53 hkmoffa * Cantera/clib/src/Makefile.in: Added a -c to the install command. This is needed for the built-in install command. 2007-07-12 12:52 hkmoffa * Makefile.in: Added a file to clean rule that frequently gets created and not destroyed 2007-07-12 12:44 hkmoffa * Cantera/fortran/src/Makefile.in: Added an all: rule. 2007-07-12 12:40 hkmoffa * Makefile.in: added -c to the install line, so that the default install-sh will do a "cp" instead of a "mv". 2007-07-12 12:37 hkmoffa * Cantera/src/base/ctml.h: Eliminated a commented out line. 2007-07-12 12:36 hkmoffa * Cantera/src/equil/equil.h: doxygen update added brackets to a module. 2007-07-12 12:34 hkmoffa * Cantera/src/zeroD/Makefile.in: Added a rm *.d to the clean rule. 2007-07-12 12:33 hkmoffa * tools/: Makefile.in, doc/doxyinput/edemo.cpp: Added -c to the install line, so that the default install-sh will do a "cp" operation and not a "mv" operation. 2007-07-12 12:28 hkmoffa * Cantera/cxx/Makefile.in: Added a rm .depends to the clean rule. 2007-07-12 12:26 hkmoffa * Cantera/cxx/demos/Makefile.in: Added a -c argument to @INSTALL@, so that the default config/install-sh will do a "cp" instead of a "mv". 2007-07-12 07:22 hkmoffa * Cantera/src/equil/BasisOptimize.cpp: Compilation error in an optional #ifdef block. 2007-07-11 18:04 hkmoffa * bin/install_tsc.in: Added a -c to the install command. Note, it probably doesn't matter unless you are using the config/install-sh version, in which case, the change alters the command from a 'mv' to a 'cp' command. 2007-07-11 17:58 hkmoffa * ext/f2c_libs/Makefile.in: Added -c command to the @INSTALL@. It doesn't matter unless the install command is config/install-sh. For the later, it changes mv to a cp command. 2007-07-03 04:42 dggoodwin * Cantera/src/numerics/Makefile.in: added flags 2007-07-03 04:38 dggoodwin * Cantera/src/thermo/: MetalPhase.h, SurfPhase.h: added missing methods to MetalPhase, made 2 methods of SurfPhase virtual 2007-07-02 13:54 hkmoffa * test_problems/ChemEquil_ionizedGas/: Makefile.in, runtest: Fixed an error in runtest 2007-06-26 15:28 hkmoffa * Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h, IdealMolalSoln.h: Doxygen update. completed HMWSoln header information. 2007-06-26 10:43 hkmoffa * Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h: Doxygen update -> fixing documentation for functions. 2007-06-26 10:03 hkmoffa * Cantera/src/thermo/: HMWSoln.h, HMWSoln_input.cpp: Doxygen Update Worked on the header. Change of LambdaNeutral XML input section changed the attributes to species1 and species2 to be more in tune with the conventions in the rest of the input file. I don't think this section is used anywhere yet 2007-06-21 07:58 hkmoffa * Cantera/src/thermo/HMWSoln.h: Doxygen update -worked on the header 2007-06-20 14:42 hkmoffa * Cantera/src/thermo/HMWSoln.h: Doxygen update - worked on the header. 2007-06-19 07:54 hkmoffa * Cantera/src/thermo/HMWSoln.h: Doxygen Update -> Worked on the header, trying to document the format of the XML input file. 2007-06-18 09:13 hkmoffa * tools/doc/Cantera.cfg.in: Added HMWSoln. It's sufficiently far along. 2007-06-18 09:12 hkmoffa * Cantera/src/thermo/: HMWSoln.h, HMWSoln_input.cpp: Doxygen Update -> Worked on the header 2007-06-17 13:56 hkmoffa * Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h, HMWSoln_input.cpp: Doxygen update - Update of Header files 2007-06-15 16:08 hkmoffa * Cantera/src/kinetics/importKinetics.cpp: Fixed a divide by zero in the function checkRxnElementBalance() 2007-06-15 09:38 hkmoffa * Cantera/src/thermo/HMWSoln.h: Doxygen Update -> added more formulas to the header 2007-06-14 16:40 hkmoffa * Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h: Doxygen Update Worked on the class header information. 2007-06-14 08:05 hkmoffa * Cantera/src/thermo/: DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h, HMWSoln_input.cpp: Doxygen update -> Eliminated all of the doxygen warnings. However, there is a long way to go in documenting the HMWSoln header file. 2007-06-13 11:53 hkmoffa * Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h, ThermoFactory.cpp, mix_defs.h: Doxygen update -> added more member data documentation to HMWSoln Added DebyeHuckel and IdealMolalSoln to the ThermoFactory 2007-06-13 07:36 hkmoffa * Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h: Doxygen update - documented some member data Changed names to make it more readable. 2007-06-12 17:17 hkmoffa * Cantera/src/thermo/ThermoPhase.h: Made minTemp() and maxTemp() const functions, to make the paradigm consistent. 2007-06-12 17:08 hkmoffa * Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h, IdealMolalSoln.cpp, IdealMolalSoln.h, IdealSolidSolnPhase.cpp, IdealSolidSolnPhase.h, MolalityVPSSTP.cpp, MolalityVPSSTP.h, Phase.cpp, Phase.h, StoichSubstance.cpp, StoichSubstance.h, StoichSubstanceSSTP.cpp, StoichSubstanceSSTP.h, ThermoPhase.cpp, ThermoPhase.h: Made several routines const that should be const getUnitStandardConc and in Phase::nDim and getMolecularWeight() 2007-06-12 12:39 hkmoffa * Cantera/src/thermo/: HMWSoln.h, HMWSoln_input.cpp: Doxygen update Added function documentation. Added error checking on input 2007-06-12 12:14 hkmoffa * Cantera/src/thermo/: ConstDensityThermo.h, DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h, IdealMolalSoln.cpp, IdealMolalSoln.h, LatticePhase.h, SingleSpeciesTP.h, StoichSubstance.cpp, StoichSubstance.h, StoichSubstanceSSTP.cpp, StoichSubstanceSSTP.h, ThermoPhase.h: Turned the virtual function,getParameters(), to getParameters() const 2007-06-12 10:35 hkmoffa * Cantera/src/kinetics/: InterfaceKinetics.cpp, InterfaceKinetics.h: Roughed in a new function, solvePseudoSteadyStateProblem() 2007-06-12 10:33 hkmoffa * Cantera/src/thermo/: DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h, IdealMolalSoln.h, IdealSolidSolnPhase.h, WaterSSTP.h: Made constructPhaseFile() and constructPhaseXML() non-virtual. They are called from the constructor, and it generally is a tricky situation when virtual functions are called from constructors. 2007-06-12 08:52 hkmoffa * Cantera/src/thermo/: DebyeHuckel.h, HMWSoln.h: Doxygen update -> started adding doxygen docs for HMWSoln. 2007-06-12 07:42 hkmoffa * Cantera/src/kinetics/: ImplicitSurfChem.cpp, ImplicitSurfChem.h: doxygen updated - no changes to source code Added docs for some functions. 2007-06-12 07:20 hkmoffa * Cantera/src/kinetics/ReactionStoichMgr.h: doxygen update Added docs 2007-06-12 07:13 hkmoffa * Cantera/src/kinetics/Kinetics.h: Doxygen update Added docs. Took out ingroup kinetics -> doesn't seem to be a module named kinetics any more. 2007-06-12 07:07 hkmoffa * Cantera/src/kinetics/Makefile.in: Added a RM to the depends rule. 2007-06-11 12:01 hkmoffa * Cantera/src/thermo/: ThermoFactory.h, WaterPropsIAPWS.cpp, WaterPropsIAPWS.h: Doxygen Update -> Finished removing all warning messages. 2007-06-11 09:23 hkmoffa * Cantera/src/base/utilities.h: Doxygen update documented timesConstant and polynomial routines. 2007-06-11 09:01 hkmoffa * Cantera/src/thermo/: ThermoFactory.cpp, ThermoFactory.h: doxygen update Added documentation for undocumented functions. 2007-06-11 08:22 hkmoffa * tools/doc/Cantera.cfg.in: Added the clockWC class to the doxygen docs. 2007-06-11 08:20 hkmoffa * Cantera/cxx/include/Cantera.h: Added the clockWC.h include to the c++ interface. 2007-06-11 08:20 hkmoffa * Cantera/src/base/: CMakeLists.txt, Makefile.in, clockWC.cpp, clockWC.h: Wall Clock Timer: Added class that implements a simple wall clock timer 2007-06-08 08:13 hkmoffa * Cantera/src/base/: Array.h, misc.cpp, units.h: Doxygen update -> eliminated some doxygen warnings. 2007-06-08 08:01 hkmoffa * Cantera/src/thermo/: SimpleThermo.h, SpeciesThermoFactory.cpp, SpeciesThermoFactory.h, SpeciesThermoMgr.h, ThermoFactory.h: doxygen update- This contains changes to comments, to reduce number of dox warnings. 2007-06-05 08:17 hkmoffa * Cantera/src/thermo/: EdgePhase.h, IdealGasPDSS.cpp, IdealGasPDSS.h, IdealMolalSoln.h, LatticePhase.cpp, LatticePhase.h, LatticeSolidPhase.cpp, LatticeSolidPhase.h, MetalPhase.h, PDSS.h, PureFluidPhase.cpp, PureFluidPhase.h, SingleSpeciesTP.cpp, SingleSpeciesTP.h, StoichSubstanceSSTP.cpp, StoichSubstanceSSTP.h, SurfPhase.cpp, VPStandardStateTP.h: Filled the copy constructors, assignment operators, and duplication functions for the remaining ThermoPhase objects. 2007-06-04 16:09 hkmoffa * Cantera/src/kinetics/: Kinetics.h, importKinetics.cpp, importKinetics.h: Made getReagents global and addPhase virtual. 2007-06-04 16:05 hkmoffa * Cantera/src/kinetics/ReactionData.h: Changed the destructor to be virtual. 2007-06-04 16:02 hkmoffa * Cantera/src/kinetics/: InterfaceKinetics.cpp, InterfaceKinetics.h: Added a routine to return the elctrochemical beta for a reaction. Fixed an error in a debug printout routine that tests when the BV factor may overwhelm the activation energy, and I moved the printout to DEBUG_MODE. 2007-06-04 11:42 hkmoffa * configure.in: Added a test directory. 2007-06-04 11:41 hkmoffa * test_problems/: Makefile.in, cathermo/Makefile.in, cathermo/DH_graph_NM/.cvsignore, cathermo/DH_graph_acommon/.cvsignore, cathermo/DH_graph_bdotak/.cvsignore, diamondSurf_dupl/.cvsignore, diamondSurf_dupl/Makefile.in, diamondSurf_dupl/diamond.xml, diamondSurf_dupl/output_blessed.txt, diamondSurf_dupl/runDiamondDupl.cpp, diamondSurf_dupl/runtest: Added a test problem for the duplication of common ThermoPhase objects like IdealGasPhase and SurfPhase. 2007-06-04 11:39 hkmoffa * Cantera/src/thermo/: DebyeHuckel.h, HMWSoln.h, IdealGasPhase.cpp, IdealGasPhase.h, StoichSubstance.cpp, StoichSubstance.h, SurfPhase.cpp, SurfPhase.h, ThermoPhase.h: Copy constructors, assignment operators, and duplicators: Extended these to the more common ThermoPhase objects. 2007-06-01 18:07 hkmoffa * test_problems/ChemEquil_ionizedGas/: .cvsignore, ionizedGasEquil.cpp, output_blessed.txt, runtest, table_blessed.csv: Rebaselined the problem. There were minor changes in the solution. Moved the test to a csv comparison which can differentiate between large and small differences. 2007-06-01 17:14 hkmoffa * test_problems/cathermo/HMW_dupl_test/: .cvsignore, HMW_NaCl_sp1977_alt.xml, HMW_dupl_test.cpp, Makefile.in, NaCl_Solid.xml, README, TemperatureTable.h, output_blessed.txt, runtest, sortAlgorithms.cpp, sortAlgorithms.h: Added another test problem that checks the duplMyselfAsThermoPhase capability. 2007-06-01 17:02 hkmoffa * Cantera/src/base/: xml.cpp, xml.h: Wrote a valid copy constructor and assignment operator for XML_Node, and made them public. It turns out the Cabinet.h routines needed these. Previously, they were using the compiler default routines, which was a bug. Now, they are using explicit routines. Note, these new routines have not been checked. However, they do have the chance of being correct. 2007-06-01 16:44 hkmoffa * Cantera/src/thermo/: ConstDensityThermo.cpp, ConstDensityThermo.h, Constituents.cpp, DebyeHuckel.cpp, GeneralSpeciesThermo.cpp, HMWSoln.cpp, NasaThermo.h, PDSS.cpp, PDSS.h, Phase.cpp, Phase.h, ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h, SpeciesThermoMgr.h, State.cpp, ThermoPhase.cpp, WaterPDSS.cpp, WaterPDSS.h, WaterProps.cpp, WaterPropsIAPWS.cpp, WaterPropsIAPWS.h, WaterPropsIAPWSphi.cpp: Bugfix checkin to get the duplMyselfAsThermoPhase() routines working. Bugs include quite a few errors in the copy constructors and assignment operator functions, which, for most of them, have been checked against a sample problem, HMW_dupl_test, for the very first time. Note, the duplMyselfAsThermoPhase() routines are now working. 2007-06-01 16:36 hkmoffa * Cantera/src/base/: stringUtils.h, xml.cpp, xml.h: Changed the copy() and copyUnion() functions to be const. Declared the XML_Node copy constructor and assignment operators to be private -> they don't work, so accidently invoking them is an error. Now, a compilation error will occur. Note, the copy() routine can be used instead to create copies of XML trees. 2007-06-01 12:12 hkmoffa * Cantera/src/thermo/: ConstDensityThermo.cpp, ConstDensityThermo.h, GeneralSpeciesThermo.cpp, GeneralSpeciesThermo.h, MolalityVPSSTP.cpp, NasaThermo.h, ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h, SpeciesThermoMgr.h, ThermoPhase.cpp: Added copy constructors and assignment operators where they were missing. Working towards getting the duplicate member functions to work. 2007-06-01 08:31 hkmoffa * Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h, IdealMolalSoln.cpp, IdealMolalSoln.h, IdealSolidSolnPhase.cpp, IdealSolidSolnPhase.h, MolalityVPSSTP.cpp, MolalityVPSSTP.h, State.cpp, ThermoPhase.cpp, ThermoPhase.h, VPStandardStateTP.cpp, VPStandardStateTP.h, WaterSSTP.cpp, WaterSSTP.h: Changed the duplMyselfAsThermoPhase function to be a const function (trying to keep a unified view of what are const and non-const functions within the ThermoPhase classes) 2007-05-31 16:51 hkmoffa * Cantera/src/converters/: Reaction.h, RxnSpecies.h, ck2ct.cpp, ckr_defs.h: Fixed a UMR in Reaction.h that was causing optimized versions of ck2cti to hang or seg fault sometimes. Added some exceptions that captures cases where the thermo parameters for a molecule were not found in the database. Now, an error exit occurs, instead of before, where misc garbage but written to the output file. 2007-05-29 03:38 dggoodwin * Cantera/src/kinetics/importKinetics.cpp: correcting recently-introduced bug 2007-05-24 14:09 hkmoffa * Cantera/src/thermo/: SurfPhase.cpp, SurfPhase.h: Added missing partial molar functions. 2007-05-20 15:22 hkmoffa * test_problems/cathermo/: DH_graph_1/DH_NaCl_dilute.xml, DH_graph_NM/DH_NaCl_NM.xml, DH_graph_Pitzer/DH_NaCl_Pitzer.xml, DH_graph_acommon/DH_NaCl_acommon.xml, DH_graph_acommon/runtest, DH_graph_bdotak/DH_NaCl_bdotak.xml, HMW_graph_CpvT/HMW_NaCl_sp1977_alt.xml, HMW_graph_GvI/HMW_NaCl.xml, HMW_graph_GvT/HMW_NaCl_sp1977_alt.xml, HMW_graph_HvT/HMW_NaCl_sp1977_alt.xml, HMW_graph_VvT/HMW_NaCl_sp1977_alt.xml, HMW_test_1/HMW_NaCl.xml, HMW_test_3/HMW_NaCl_tc.xml: Change some input files to ensure that charge and the element composition of E are in line with each other. 2007-05-20 15:21 hkmoffa * Cantera/src/thermo/: Constituents.cpp, SpeciesThermoFactory.cpp, WaterPDSS.cpp, phasereport.cpp: Added a Check between the input charge and the composition of the "E" element. At this point there doesn't seem to be a reason to let meaning of the definition of charge() and the elemental composition of E in each species to diverge. 2007-05-18 03:54 dggoodwin * Cantera/src/kinetics/EdgeKinetics.cpp, Cantera/src/kinetics/EdgeKinetics.h, Cantera/src/kinetics/InterfaceKinetics.cpp, Cantera/src/kinetics/InterfaceKinetics.h, Cantera/src/kinetics/Makefile.in, CMakeLists.txt, config.cmake, Cantera/python/Cantera/Kinetics.py, Cantera/python/src/ctkinetics_methods.cpp, Cantera/src/thermo/CMakeLists.txt, cmake/fortran.cmake: EdgeKinetics now derives from InterfaceKinetics, and InterfaceKinetics has the beta parameter for electrochemistry 2007-05-17 14:17 hkmoffa * Cantera/src/kinetics/StoichManager.h: doxygen change reformated some comments. 2007-05-17 14:16 hkmoffa * Cantera/src/kinetics/Kinetics.cpp: Took out the ReactionData.h include. The kinetics class doesn't use it. 2007-05-17 08:02 hkmoffa * Cantera/src/thermo/: SurfPhase.cpp, SurfPhase.h, ThermoPhase.cpp: Added several missing thermodynamics routines to SurfPhase object. Added error checking to make sure that a ThermoPhase object has at least one species defined in it. Currently, it just won't work if there are 0 species in the object, so we might as well throw an error early to indicate this. Added error checking to the SurfPhase object to indicate when setCoverages is called with no coverages specified. This condition had caused NaN's. Now, it throws a CanteraError. 2007-05-14 07:37 hkmoffa * tools/doc/Cantera.cfg.in: Added a dir. Added more predefines. 2007-05-13 18:02 hkmoffa * Cantera/src/kinetics/: InterfaceKinetics.cpp, InterfaceKinetics.h: Doxygen updates -> worked on documenting functions Changed a few functions from private to protected so that they would be available to derived classes 2007-05-13 18:00 hkmoffa * Cantera/src/base/: FactoryBase.h, global.h, misc.cpp: Doxygen update -> Eliminating warning messages. 2007-05-12 07:42 dggoodwin * cmake/fortran.cmake: support for cmake 2007-05-12 05:55 dggoodwin * configure, configure.in, Cantera/python/setup.py.in, ext/f2c_libs/arith.h, tools/templates/f90/demo.mak.in: bug fixes 2007-05-11 16:11 hkmoffa * Cantera/src/kinetics/: GasKinetics.h, InterfaceKinetics.cpp, InterfaceKinetics.h: Doxygen update of some kinetics classes. Have a ways to go before these are documented. 2007-05-11 14:44 hkmoffa * Cantera/src/base/: global.h, misc.cpp: Added doxygen documentation. still needs work to get all the new stuff covered. 2007-05-11 13:58 dggoodwin * configure, configure.in, preconfig, Cantera/python/setup.py.in: bug fixes 2007-05-11 12:56 hkmoffa * tools/doc/Cantera.cfg.in: Added PREDEFINES. Apparently, the current config.h setup doesn't get passed through doxygen's predefines. Therefore, modules aren't being read into the doxygen documentation. The solution is to artificially define PREDEFINES, so that doxygen can operate correctly. 2007-05-11 12:54 hkmoffa * Cantera/src/thermo/PureFluidPhase.h: Took out config.h include. Doxygen preprocessing is at fault, and it can be fixed through the doxygen input file. 2007-05-11 12:29 dggoodwin * configure, configure.in, preconfig, Cantera/python/setup.py.in, ext/math/Makefile.in, ext/math/printstring.c: bug fixes 2007-05-11 10:40 hkmoffa * Cantera/src/equil/: MultiPhase.cpp, MultiPhase.h: Added an IntEnergy calculation routine. 2007-05-11 10:37 hkmoffa * Cantera/src/base/ctexceptions.h: Added a namespace declaration to Assert commands, that's needed in applications. 2007-05-11 10:34 hkmoffa * Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h, IdealMolalSoln.cpp, VPStandardStateTP.cpp, VPStandardStateTP.h: Fixed a bug in the calculation of reference state values, for thermophase objects that derive from VPStandardStateTP 2007-05-11 10:31 hkmoffa * Cantera/src/thermo/WaterSSTP.h: Took out bad documentation statements. 2007-05-11 10:30 hkmoffa * Cantera/src/thermo/: MolalityVPSSTP.cpp, ThermoPhase.cpp, ThermoPhase.h: Added a :chargeNeutralityNecessary() function and boolean. If charge neutrality is necessary for the proper specification of thermo functions, this is true. If not it's set to false. Currently, it's true for molality based formulations, and false otherwise. It's false for Ideal gases. 2007-05-11 10:21 hkmoffa * Cantera/src/thermo/PureFluidPhase.h: Added a specific include config.h command, because doxygen wasn't recognizing it. 2007-05-11 10:19 hkmoffa * tools/doc/Cantera.cfg.in: Added additional directories so that doxygen can find the files. 2007-05-10 13:22 dggoodwin * configure, configure.in, preconfig, Cantera/cxx/src/Makefile.in, Cantera/fortran/src/Makefile.in, Cantera/src/base/utilities.h, Cantera/src/equil/BasisOptimize.cpp, Cantera/src/thermo/State.cpp, ext/f2c_libs/arith.h, tools/src/Makefile.in: minor bug fixes 2007-05-10 11:39 dggoodwin * Cantera/src/base/FactoryBase.h: added FactoryBase.h 2007-05-10 10:59 dggoodwin * CMakeLists.txt, config.cmake, config.h.in, config.h_cmake.in, Cantera/CMakeLists.txt, Cantera/src/CMakeLists.txt, Cantera/src/base/CMakeLists.txt: adding support for cmake. 2007-05-09 20:28 dggoodwin * config.h.in, configure, configure.in, preconfig, Cantera/clib/src/Makefile.in, Cantera/python/setup.py.in, Cantera/src/base/Makefile.in, Cantera/src/base/global.h, Cantera/src/base/misc.cpp, Cantera/src/base/units.h, Cantera/src/equil/BasisOptimize.cpp, Cantera/src/equil/ChemEquil.cpp, Cantera/src/equil/ChemEquil.h, Cantera/src/equil/MultiPhase.cpp, Cantera/src/equil/MultiPhaseEquil.cpp, Cantera/src/equil/MultiPhaseEquil.h, Cantera/src/equil/equilibrate.cpp, Cantera/src/kinetics/FalloffFactory.cpp, Cantera/src/kinetics/FalloffFactory.h, Cantera/src/kinetics/FalloffMgr.h, Cantera/src/kinetics/KineticsFactory.cpp, Cantera/src/kinetics/KineticsFactory.h, Cantera/src/kinetics/importKinetics.cpp, Cantera/src/thermo/SpeciesThermoFactory.cpp, Cantera/src/thermo/SpeciesThermoFactory.h, Cantera/src/thermo/ThermoFactory.cpp, Cantera/src/thermo/ThermoFactory.h, Cantera/src/transport/TransportFactory.cpp, Cantera/src/transport/TransportFactory.h, Cantera/src/zeroD/Makefile.in, Cantera/src/zeroD/ReactorFactory.cpp, Cantera/src/zeroD/ReactorFactory.h, ext/f2c_libs/arith.h, test_problems/diamondSurf/Makefile.in, test_problems/min_python/minDiamond/Makefile.in, test_problems/min_python/negATest/Makefile.in, test_problems/negATest/Makefile.in, test_problems/pureFluidTest/Makefile.in, test_problems/silane_equil/Makefile.in, test_problems/surfkin/Makefile.in: added thread safety option 2007-05-06 10:16 hkmoffa * Cantera/: Makefile.in, src/Makefile.in: Fixed the make clean rule. 2007-05-06 10:15 hkmoffa * test_problems/: Makefile.in, ChemEquil_gri_matrix/Makefile.in, cathermo/Makefile.in: Fixed the Make clean rule. Have to eliminate .depends before make is called, because the rule to 'make .depends' was being called on invocation if .depends exists. 2007-05-04 17:30 hkmoffa * Cantera/cxx/src/importPhase.cpp: forgot a file. 2007-05-04 17:29 hkmoffa * Cantera/cxx/: include/importPhase.h, src/Makefile.in, src/cxxutils.cpp: Fixed an error that occurred during linking of applications. There were multiple definitions of importPhase(string, string), one per application file. I moved the definition of importPhase to libctxx.a as it had to be in an object file, and I retained the declaration within importPhase.h. I also added declarations for the other functions in libctxx.a into importPhase.h, as they weren't declared anywhere in the interface. 2007-05-04 13:09 hkmoffa * Cantera/src/kinetics/Makefile.in: Added a missing .h file. 2007-05-04 12:47 hkmoffa * configure.in: Changed the order Cantera libraries in the LINKER statements that come out of autoconf. An unsatisfied external occurred because thermo occurred before kinetics. Changed thermo to occur after kinetics. 2007-05-04 12:35 hkmoffa * Cantera/src/: base/.cvsignore, equil/.cvsignore, kinetics/.cvsignore: Added .cvsignore files to new directories. 2007-05-04 12:27 hkmoffa * Cantera/src/numerics/: .cvsignore, CVode.cpp: Fixed a compilation error. The include files were not found. 2007-05-04 08:52 dggoodwin * Cantera/cxx/include/Interface.h: minor cleanup 2007-05-04 08:48 dggoodwin * Cantera/cxx/include/Edge.h, Cantera/cxx/include/GRI30.h, Cantera/cxx/include/IncompressibleSolid.h, Cantera/cxx/include/Interface.h, Cantera/cxx/include/Metal.h, Cantera/cxx/include/importPhase.h, Cantera/cxx/include/thermo.h, Cantera/src/FILES, Cantera/src/ReactionStoichMgr.cpp, Cantera/src/kinetics/ReactionStoichMgr.cpp, test_problems/surfkin/Interface.h: minor cleanup 2007-05-04 08:27 dggoodwin * Cantera/src/: base/Makefile.in, equil/Makefile.in, kinetics/Makefile.in, numerics/Makefile.in: added Makefiles 2007-05-04 08:18 dggoodwin * Makefile.in, configure, configure.in, preconfig, Cantera/clib/src/Makefile.in, Cantera/clib/src/Storage.cpp, Cantera/clib/src/Storage.h, Cantera/clib/src/ct.cpp, Cantera/clib/src/ct.h, Cantera/clib/src/ctonedim.cpp, Cantera/clib/src/ctonedim.h, Cantera/clib/src/ctreactor.cpp, Cantera/clib/src/ctxml.cpp, Cantera/cxx/demos/Makefile.in, Cantera/cxx/include/Cantera.h, Cantera/cxx/include/IdealGasMix.h, Cantera/cxx/include/Interface.h, Cantera/cxx/include/PureFluid.h, Cantera/cxx/include/kinetics.h, Cantera/cxx/include/onedim.h, Cantera/cxx/include/thermo.h, Cantera/cxx/include/transport.h, Cantera/cxx/include/zerodim.h, Cantera/cxx/src/Makefile.in, Cantera/fortran/src/Makefile.in, Cantera/fortran/src/fct.cpp, Cantera/fortran/src/fctxml.cpp, Cantera/fortran/src/flib_defs.h, Cantera/matlab/cantera/private/mllogger.h, Cantera/python/Makefile.in, Cantera/python/setup.py.in, Cantera/python/src/pycantera.cpp, Cantera/python/src/pylogger.h, Cantera/user/Makefile.in, test_problems/Makefile.in, test_problems/ChemEquil_gri_matrix/Makefile.in, test_problems/ChemEquil_gri_matrix/gri_matrix.cpp, test_problems/ChemEquil_gri_pairs/Makefile.in, test_problems/ChemEquil_ionizedGas/Makefile.in, test_problems/ChemEquil_red1/Makefile.in, test_problems/cathermo/DH_graph_1/DH_graph_1.cpp, test_problems/cathermo/DH_graph_1/Makefile.in, test_problems/cathermo/DH_graph_NM/DH_graph_1.cpp, test_problems/cathermo/DH_graph_NM/Makefile.in, test_problems/cathermo/DH_graph_Pitzer/DH_graph_1.cpp, test_problems/cathermo/DH_graph_Pitzer/Makefile.in, test_problems/cathermo/DH_graph_acommon/DH_graph_1.cpp, test_problems/cathermo/DH_graph_acommon/Makefile.in, test_problems/cathermo/DH_graph_bdotak/DH_graph_1.cpp, test_problems/cathermo/DH_graph_bdotak/Makefile.in, test_problems/cathermo/HMW_graph_CpvT/HMW_graph_CpvT.cpp, test_problems/cathermo/HMW_graph_CpvT/Makefile.in, test_problems/cathermo/HMW_graph_GvI/HMW_graph_GvI.cpp, test_problems/cathermo/HMW_graph_GvI/Makefile.in, test_problems/cathermo/HMW_graph_GvT/HMW_graph_GvT.cpp, test_problems/cathermo/HMW_graph_GvT/Makefile.in, test_problems/cathermo/HMW_graph_HvT/HMW_graph_HvT.cpp, test_problems/cathermo/HMW_graph_HvT/Makefile.in, test_problems/cathermo/HMW_graph_VvT/HMW_graph_VvT.cpp, test_problems/cathermo/HMW_graph_VvT/Makefile.in, test_problems/cathermo/HMW_test_1/HMW_test_1.cpp, test_problems/cathermo/HMW_test_1/Makefile.in, test_problems/cathermo/HMW_test_3/HMW_test_3.cpp, test_problems/cathermo/HMW_test_3/Makefile.in, test_problems/cathermo/ims/IMSTester.cpp, test_problems/cathermo/ims/Makefile.in, test_problems/cathermo/issp/ISSPTester.cpp, test_problems/cathermo/issp/Makefile.in, test_problems/cathermo/stoichSubSSTP/Makefile.in, test_problems/cathermo/stoichSubSSTP/stoichSubSSTP.cpp, test_problems/cathermo/testIAPWS/Makefile.in, test_problems/cathermo/testIAPWSPres/Makefile.in, test_problems/cathermo/testIAPWSTripP/Makefile.in, test_problems/cathermo/testWaterPDSS/Makefile.in, test_problems/cathermo/testWaterTP/Makefile.in, test_problems/cathermo/testWaterTP/testWaterSSTP.cpp, test_problems/diamondSurf/Makefile.in, test_problems/diamondSurf/runDiamond.cpp, test_problems/fracCoeff/Makefile.in, test_problems/fracCoeff/fracCoeff.cpp, test_problems/min_python/minDiamond/Makefile.in, test_problems/min_python/minDiamond/runDiamond.cpp, test_problems/min_python/negATest/Makefile.in, test_problems/min_python/negATest/negATest.cpp, test_problems/negATest/Makefile.in, test_problems/negATest/negATest.cpp, test_problems/pureFluidTest/Makefile.in, test_problems/pureFluidTest/testPureWater.cpp, test_problems/silane_equil/Makefile.in, test_problems/surfkin/Makefile.in, test_problems/surfkin/surfdemo.cpp, tools/src/Makefile.in, tools/src/ck2cti.cpp: reorganized source tree, changed include files, etc. 2007-05-04 08:15 dggoodwin * Cantera/src/: Array.h, XML_Writer.h, config.h, ct2ctml.cpp, ct_defs.h, ctexceptions.h, ctml.cpp, ctml.h, global.h, logger.h, misc.cpp, plots.cpp, plots.h, stringUtils.cpp, stringUtils.h, units.h, utilities.h, vec_functions.h, xml.cpp, xml.h, base/Array.h, base/XML_Writer.h, base/config.h, base/ct2ctml.cpp, base/ct_defs.h, base/ctexceptions.h, base/ctml.cpp, base/ctml.h, base/global.h, base/logger.h, base/misc.cpp, base/plots.cpp, base/plots.h, base/stringUtils.cpp, base/stringUtils.h, base/units.h, base/utilities.h, base/vec_functions.h, base/xml.cpp, base/xml.h: moved base files 2007-05-04 07:41 dggoodwin * Cantera/src/: ArrayViewer.h, BandMatrix.cpp, BandMatrix.h, BasisOptimize.cpp, CVode.cpp, CVode.h, CVodesIntegrator.cpp, CVodesIntegrator.h, ChemEquil.cpp, ChemEquil.h, ConstCpPoly.cpp, ConstCpPoly.h, ConstDensityThermo.cpp, ConstDensityThermo.h, Constituents.cpp, Constituents.h, Crystal.h, DAE_Solver.h, DAE_solvers.cpp, DASPK.cpp, DASPK.h, DenseMatrix.cpp, DenseMatrix.h, EdgeKinetics.cpp, EdgeKinetics.h, EdgePhase.h, Elements.cpp, Elements.h, Enhanced3BConc.h, FILES, FalloffFactory.cpp, FalloffFactory.h, FalloffMgr.h, Func1.cpp, Func1.h, FuncEval.h, GRI_30_Kinetics.cpp, GRI_30_Kinetics.h, GasKinetics.cpp, GasKinetics.h, GasKineticsWriter.cpp, GasKineticsWriter.h, GeneralSpeciesThermo.cpp, GeneralSpeciesThermo.h, Group.cpp, Group.h, IDA_Solver.cpp, IDA_Solver.h, IdealGasPhase.cpp, IdealGasPhase.h, ImplicitChem.cpp, ImplicitChem.h, ImplicitSurfChem.cpp, ImplicitSurfChem.h, IncompressibleThermo.h, Integrator.h, InterfaceKinetics.cpp, InterfaceKinetics.h, Kinetics.cpp, Kinetics.h, KineticsFactory.cpp, KineticsFactory.h, LatticePhase.cpp, LatticePhase.h, LatticeSolidPhase.cpp, LatticeSolidPhase.h, Makefile.in, MetalPhase.h, Mu0Poly.cpp, Mu0Poly.h, MultiPhase.cpp, MultiPhase.h, MultiPhaseEquil.cpp, MultiPhaseEquil.h, NasaPoly1.h, NasaPoly2.h, NasaThermo.h, ODE_integrators.cpp, Phase.cpp, Phase.h, PropertyCalculator.h, PureFluidPhase.cpp, PureFluidPhase.h, RateCoeffMgr.h, ReactionData.h, ReactionPath.cpp, ReactionPath.h, ReactionStoichMgr.h, ResidEval.h, RxnRates.h, ShomatePoly.h, ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h, SpeciesThermoFactory.cpp, SpeciesThermoFactory.h, SpeciesThermoInterpType.h, SpeciesThermoMgr.h, State.cpp, State.h, StoichManager.h, StoichSubstance.cpp, StoichSubstance.h, SurfPhase.cpp, SurfPhase.h, ThermoFactory.cpp, ThermoFactory.h, ThermoPhase.cpp, ThermoPhase.h, ThirdBodyMgr.h, ctlapack.h, ctvector.cpp, ctvector.h, diagnostics.h, equil.h, equilibrate.cpp, funcs.cpp, funcs.h, importCTML.cpp, importCTML.h, lapack.h, mix_defs.h, phasereport.cpp, polyfit.h, reaction_defs.h, sort.cpp, sort.h, speciesThermoTypes.h, converters/Makefile.in, converters/ck2ct.cpp, oneD/Domain1D.h, oneD/Inlet1D.h, oneD/Makefile.in, oneD/MultiJac.h, oneD/MultiNewton.cpp, oneD/OneDim.cpp, oneD/Sim1D.h, oneD/StFlow.cpp, oneD/StFlow.h, oneD/newton_utils.cpp, transport/DustyGasTransport.cpp, transport/DustyGasTransport.h, transport/L_matrix.h, transport/MMCollisionInt.cpp, transport/MMCollisionInt.h, transport/Makefile.in, transport/MixTransport.cpp, transport/MixTransport.h, transport/MultiTransport.cpp, transport/MultiTransport.h, transport/SolidTransport.cpp, transport/SolidTransport.h, transport/TransportBase.h, transport/TransportFactory.cpp, transport/TransportFactory.h, transport/TransportParams.h, zeroD/ConstPressureReactor.cpp, zeroD/FlowDevice.cpp, zeroD/FlowDevice.h, zeroD/Makefile.in, zeroD/Reactor.cpp, zeroD/Reactor.h, zeroD/ReactorBase.h, zeroD/ReactorNet.cpp, zeroD/ReactorNet.h, zeroD/Wall.cpp, zeroD/Wall.h, zeroD/flowControllers.h: removed files that were added in subdirectories 2007-05-04 07:40 dggoodwin * Cantera/src/numerics/: ArrayViewer.h, BandMatrix.cpp, BandMatrix.h, CVode.cpp, CVode.h, CVodesIntegrator.cpp, CVodesIntegrator.h, DAE_Solver.h, DAE_solvers.cpp, DASPK.cpp, DASPK.h, DenseMatrix.cpp, DenseMatrix.h, Func1.cpp, Func1.h, FuncEval.h, IDA_Solver.cpp, IDA_Solver.h, Integrator.h, ODE_integrators.cpp, ResidEval.h, ctlapack.h, funcs.cpp, funcs.h, lapack.h, polyfit.h, sort.cpp, sort.h: oved files to numerics subdirectory 2007-05-04 07:27 dggoodwin * Cantera/src/kinetics/: EdgeKinetics.cpp, EdgeKinetics.h, Enhanced3BConc.h, FalloffFactory.cpp, FalloffFactory.h, FalloffMgr.h, GRI_30_Kinetics.cpp, GRI_30_Kinetics.h, GasKinetics.cpp, GasKinetics.h, GasKineticsWriter.cpp, GasKineticsWriter.h, Group.cpp, Group.h, ImplicitChem.cpp, ImplicitChem.h, ImplicitSurfChem.cpp, ImplicitSurfChem.h, InterfaceKinetics.cpp, InterfaceKinetics.h, Kinetics.cpp, Kinetics.h, KineticsFactory.cpp, KineticsFactory.h, RateCoeffMgr.h, ReactionData.h, ReactionPath.cpp, ReactionPath.h, ReactionStoichMgr.h, RxnRates.h, StoichManager.h, ThirdBodyMgr.h, importKinetics.cpp, importKinetics.h, reaction_defs.h: moved files to kinetics subdirectory 2007-05-04 07:12 dggoodwin * Cantera/src/equil/: BasisOptimize.cpp, ChemEquil.cpp, ChemEquil.h, MultiPhase.cpp, MultiPhase.h, MultiPhaseEquil.cpp, MultiPhaseEquil.h, PropertyCalculator.h, equil.h, equilibrate.cpp: moved files to equil subdirectory 2007-05-04 07:02 dggoodwin * Cantera/src/thermo/: ConstCpPoly.cpp, ConstCpPoly.h, ConstDensityThermo.cpp, ConstDensityThermo.h, Constituents.cpp, Constituents.h, Crystal.h, DebyeHuckel.cpp, EdgePhase.h, Elements.cpp, Elements.h, GeneralSpeciesThermo.cpp, GeneralSpeciesThermo.h, HMWSoln.cpp, HMWSoln_input.cpp, IdealGasPDSS.cpp, IdealGasPhase.cpp, IdealGasPhase.h, IdealMolalSoln.cpp, IdealSolidSolnPhase.h, LatticePhase.cpp, LatticePhase.h, LatticeSolidPhase.cpp, LatticeSolidPhase.h, Makefile.in, MetalPhase.h, Mu0Poly.cpp, Mu0Poly.h, NasaPoly1.h, NasaPoly2.h, NasaThermo.h, PDSS.cpp, Phase.cpp, Phase.h, PureFluidPhase.cpp, PureFluidPhase.h, ShomatePoly.h, ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h, SpeciesThermoFactory.cpp, SpeciesThermoFactory.h, SpeciesThermoInterpType.h, SpeciesThermoMgr.h, State.cpp, State.h, StoichSubstance.cpp, StoichSubstance.h, StoichSubstanceSSTP.cpp, SurfPhase.cpp, SurfPhase.h, ThermoFactory.cpp, ThermoFactory.h, ThermoPhase.cpp, ThermoPhase.h, WaterPDSS.cpp, WaterSSTP.cpp, mix_defs.h, phasereport.cpp, speciesThermoTypes.h: moved files to thermo subdirectory 2007-04-30 11:15 dggoodwin * Cantera/src/: Func1.cpp, Func1.h: more on functors 2007-04-26 16:00 dggoodwin * Cantera/: clib/src/ctfunc.cpp, clib/src/ctfunc.h, python/Cantera/Func.py, python/src/ctfunc_methods.cpp, python/src/methods.h, src/Func1.cpp, src/Func1.h: improved functors 2007-04-25 13:41 dggoodwin * Cantera/: clib/src/ctonedim.cpp, clib/src/ctonedim.h, python/Cantera/OneD/onedim.py, python/examples/flames/flame2.py, python/src/ctonedim_methods.cpp, python/src/methods.h, src/ThermoFactory.cpp, src/oneD/StFlow.cpp, src/oneD/StFlow.h: added ability to enable Soret effect in flame calculations 2007-04-24 17:08 dggoodwin * ext/math/: daux.f, dpolft.f, j4save.f, polfit.f, pvalue.f, xerprn.f: ; 2007-04-24 17:06 dggoodwin * Cantera/src/oneD/Domain1D.h: added cPorousType 2007-04-24 17:05 dggoodwin * Cantera/src/SpeciesThermoMgr.h: added doc 2007-04-24 17:03 dggoodwin * Cantera/src/CVodesIntegrator.h: fail if no sundials 2007-04-24 17:03 dggoodwin * Cantera/src/CVodesIntegrator.cpp: include config.h 2007-04-17 14:10 hkmoffa * Cantera/src/thermo/Makefile.in, ext/f2c_libs/arith.h, test_problems/Makefile.in: Fixed an error in the test suite. Changed some files around in caThermo so that requesting the ideal solution option but not the electrochemistry option will now pass the test suite. 2007-04-13 15:39 hkmoffa * configure, configure.in, preconfig, Cantera/clib/src/Makefile.in, Cantera/cxx/demos/Makefile.in, Cantera/cxx/src/Makefile.in, Cantera/src/Makefile.in, Cantera/src/converters/Makefile.in, Cantera/src/oneD/Makefile.in, Cantera/src/thermo/Makefile.in, Cantera/src/transport/Makefile.in, Cantera/src/zeroD/Makefile.in, Cantera/user/Makefile.in, ext/blas/Makefile.in, ext/cvode/Makefile.in, ext/f2c_blas/Makefile.in, ext/f2c_lapack/Makefile.in, ext/f2c_libs/Makefile.in, ext/f2c_libs/arith.h, ext/f2c_math/Makefile.in, ext/f2c_recipes/Makefile.in, ext/lapack/Makefile.in, ext/math/Makefile.in, ext/recipes/Makefile.in, ext/tpx/Makefile.in, test_problems/ChemEquil_ionizedGas/output_blessed.txt: Added in the PIC autoconf variable, that already existed, into most of the Makefiles in the code. This variable will now be used to specify the position independent code compiler option within Cantera. Note, this bug fix was needed for a 64 bit full python compile on linux. 2007-04-13 09:47 hkmoffa * test_problems/cxx_ex/kin2_blessed.csv: Rebaselined this file. The title line was wrong, and csvdiff is now comparing title lines. 2007-04-10 16:06 hkmoffa * Cantera/python/: Makefile.in, setup.py.in: Reworked a few issues in the python build script so that compilation and link errors would be more self-evident. Now, link errors in the _cantera.so build will register with the python layer, because a python exception is raised. This will propagate into the Makefile causing make to prematurely stop the build process, because one of its commands has come back with a non-zero exit status. This causes the "make all" command to return a non-zero exit status, so that the entire make command comes to a halt, which is the desired behavior. 2007-04-10 15:19 hkmoffa * Cantera/clib/src/: ct.cpp, ctreactor.cpp: Fix for solaris. Previous attempted bug fix actually didn't compile on solaris. The solution to get it to work on both linux and solaris was to add a declaration (not a definition) to the alternate file. 2007-04-10 15:04 hkmoffa * Cantera/clib/src/: ct.cpp, ctfunc.cpp, ctreactor.cpp, ctxml.cpp: Fixed linking error in python module that was caused by duplicate static member storage statements on linux. 2007-04-01 15:00 hkmoffa * tools/testtools/csvdiff.cpp: Changed csvdiff so that it would care about the header information, and fail a test the headers are different. Note, I am using this information to put the iteration count. 2007-03-30 16:20 hkmoffa * Cantera/src/BasisOptimize.cpp, Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhase.h, tools/doc/Cantera.cfg.in: doxygen update Finished eliminating the doxygen warnings from MultiPhase 2007-03-29 16:54 hkmoffa * Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhase.h, Cantera/src/ctexceptions.h, test_problems/diamondSurf/runDiamond.cpp: doxygen update More work on MultiPhase. Fixed some errors in elementAbundance calc too. Added the definitions AssertTrace(), AssertThrow(), and AssertThrowMsg() for a debug assertion capability. Added them to a test problem to make sure that they actually compile. 2007-03-29 10:22 hkmoffa * Cantera/src/MultiPhase.cpp: Fixed an error in the element abundance calculation. 2007-03-28 13:33 hkmoffa * Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhase.h, tools/doc/Cantera.cfg.in: Added an element abundance return capability. doxygen update Started documenting MultiPhase 2007-03-26 14:53 hkmoffa * tools/testtools/: csvdiff.cpp, mdp_allo.cpp, mdp_allo.h: csvdiff update: Some data columns may now be strings. A string comparison is then done. 2007-03-23 20:12 hkmoffa * Cantera/src/Elements.h, Cantera/src/Phase.h, Cantera/src/State.h, tools/doc/doxyinput/Cantera.txt: doxygen update Worked on the Phases of Matter module 2007-03-23 08:09 hkmoffa * Cantera/cxx/include/equilibrium.h, Cantera/src/GeneralSpeciesThermo.cpp, Cantera/src/GeneralSpeciesThermo.h, Cantera/src/IdealGasPhase.cpp, Cantera/src/IdealGasPhase.h, Cantera/src/Kinetics.cpp, Cantera/src/Kinetics.h, Cantera/src/Mu0Poly.cpp, Cantera/src/Mu0Poly.h, Cantera/src/NasaPoly1.h, Cantera/src/NasaPoly2.h, Cantera/src/NasaThermo.h, Cantera/src/Phase.cpp, Cantera/src/Phase.h, Cantera/src/PureFluidPhase.cpp, Cantera/src/PureFluidPhase.h, Cantera/src/ShomatePoly.h, Cantera/src/ShomateThermo.h, Cantera/src/SimpleThermo.h, Cantera/src/SpeciesThermo.h, Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/SpeciesThermoFactory.h, Cantera/src/SpeciesThermoMgr.h, Cantera/src/State.cpp, Cantera/src/State.h, Cantera/src/SurfPhase.cpp, Cantera/src/SurfPhase.h, Cantera/src/ThermoFactory.cpp, Cantera/src/ThermoFactory.h, Cantera/src/ThermoPhase.cpp, Cantera/src/ThermoPhase.h, Cantera/src/global.h, Cantera/src/logger.h, Cantera/src/misc.cpp, Cantera/src/units.h, Cantera/src/utilities.h, Cantera/src/thermo/DebyeHuckel.cpp, Cantera/src/thermo/DebyeHuckel.h, Cantera/src/thermo/IdealMolalSoln.cpp, Cantera/src/thermo/IdealMolalSoln.h, Cantera/src/thermo/IdealSolidSolnPhase.cpp, Cantera/src/thermo/IdealSolidSolnPhase.h, Cantera/src/thermo/MolalityVPSSTP.cpp, Cantera/src/thermo/MolalityVPSSTP.h, Cantera/src/thermo/SingleSpeciesTP.cpp, Cantera/src/thermo/SingleSpeciesTP.h, Cantera/src/thermo/StoichSubstanceSSTP.cpp, Cantera/src/thermo/StoichSubstanceSSTP.h, Cantera/src/thermo/VPStandardStateTP.cpp, Cantera/src/thermo/VPStandardStateTP.h, Cantera/src/thermo/WaterPropsIAPWS.cpp, Cantera/src/thermo/WaterPropsIAPWS.h, Cantera/src/thermo/WaterPropsIAPWSphi.cpp, Cantera/src/thermo/WaterPropsIAPWSphi.h, Cantera/src/thermo/WaterSSTP.cpp, Cantera/src/thermo/WaterSSTP.h, data/inputs/.cvsignore, tools/bin/.cvsignore: Doxygen update Finished a draft of the File Tab within Doxygen. Each file now has a link to the relevant modules and classes. 2007-03-21 13:58 hkmoffa * Cantera/src/: ConstCpPoly.cpp, ConstCpPoly.h, ConstDensityThermo.cpp, ConstDensityThermo.h, Constituents.cpp, Constituents.h, EdgePhase.h, Elements.cpp, Elements.h, Kinetics.cpp, Kinetics.h, SpeciesThermoInterpType.h, ct_defs.h, ctexceptions.h, importCTML.cpp, importCTML.h, speciesThermoTypes.h, thermo/DebyeHuckel.cpp, thermo/DebyeHuckel.h: Doxygen update -- Worked on the file TAB descriptions DebyeHuckel -- made a bunch of functions public again. They were mistakenly protected. 2007-03-20 17:44 hkmoffa * Cantera/src/converters/ck2ct.cpp: Solaris 10 port - 64 bit changed getline(s, rest) form to getline(s, rest, '\n'). This is probably an internal solaris stl bug. 2007-03-20 15:42 hkmoffa * Cantera/: clib/src/ct.cpp, clib/src/ctreactor.cpp, fortran/src/fct.cpp, fortran/src/fctxml.cpp: Solaris 10 update Forgot the template specialization on the static storage declaration. Thus, previous commit wouldn't compile on linux. This fixes the problem. 2007-03-20 15:01 hkmoffa * test_problems/: cathermo/HMW_graph_GvT/Gex_standalone.cpp, cathermo/issp/runtest, pureFluidTest/runtest: solaris 10 updates fixed a compilation error. 2007-03-20 15:00 hkmoffa * ext/: cvode/Makefile.in, f2c_blas/Makefile.in, f2c_lapack/Makefile.in, f2c_libs/Makefile.in, f2c_math/Makefile.in: Solaris 10 Updates: Changed CXX_FLAGS to CFLAGS in a bunch of ext directories. 2007-03-20 14:58 hkmoffa * Cantera/: clib/src/ct.cpp, clib/src/ctreactor.cpp, fortran/src/fct.cpp, fortran/src/fctxml.cpp: Solaris 10 updates Added declarations of static member storage for templated classes. 2007-03-20 14:57 hkmoffa * Cantera/src/: ConstCpPoly.cpp, ConstDensityThermo.cpp, Group.cpp, LatticePhase.cpp, stringUtils.cpp: Solaris 10 update Added various c include files. 2007-03-20 14:56 hkmoffa * Cantera/src/Phase.cpp: Solaris 10 update Calling setState_TRY() in freezeSpecies() caused one of the test problems on solaris to fail. FreezeSpecies is called before the phase is actually set up (i.e., the size of the species is read from the input file). For constant density phases, then, this was causing a problem (divide by zero). setState() must be called after the phase is set up from the XML input file. 2007-03-20 14:53 hkmoffa * Cantera/src/Makefile.in: Solaris 10 Added CXX_FLAGS to the CXX_DEPENDS rule. 2007-03-20 14:52 hkmoffa * Cantera/src/ChemEquil.cpp: Solaris 10 update Made sure m_nComponents is never assumed to be larger than m_kk, even before it is actually calculated. 2007-03-20 14:51 hkmoffa * Cantera/src/thermo/: DebyeHuckel.cpp, HMWSoln.cpp, HMWSoln_input.cpp, WaterPDSS.cpp, WaterProps.cpp: Solaris 10 update Various std:: additions to stl functions and additions of c include files. 2007-03-20 14:49 hkmoffa * Cantera/src/thermo/IdealMolalSoln.cpp: Solaris 10 updaet Put a std:: on copy. 2007-03-20 14:48 hkmoffa * Cantera/src/thermo/PDSS.cpp: Solaris 10 update no need for a local m_temp variable. 2007-03-20 14:47 hkmoffa * Cantera/src/thermo/MolalityVPSSTP.cpp: solaris10 update no need for a separate m_kk local variable. 2007-03-20 14:46 hkmoffa * Cantera/src/thermo/SingleSpeciesTP.h: solaris 10 update Changed getActivities() to be a const function. 2007-03-20 14:45 hkmoffa * Cantera/src/: ThermoPhase.cpp, ThermoPhase.h: solaris10 update Changed getActivities to be a const function, as per the convention of the other functions in ThermoPhase. 2007-03-20 14:44 hkmoffa * Cantera/src/thermo/: WaterSSTP.cpp, WaterSSTP.h: solaris10 update Changed satPressure() to be a const function, as it should be 2007-03-20 14:43 hkmoffa * Cantera/src/thermo/: IdealSolidSolnPhase.cpp, IdealSolidSolnPhase.h: Solaris10 updates Changed some definitions to conform to const/nonconst conventions. 2007-03-20 14:28 hkmoffa * configure, configure.in: Added a missing test directory 2007-03-20 14:27 hkmoffa * tools/testtools/Makefile.in: solaris10 change Changed a @CXX@ to a @CXX_DEPENDS@ 2007-03-20 14:26 hkmoffa * tools/src/Makefile.in: solaris10 change: changed a CXX to a CXX_DEPENDS 2007-03-16 10:22 hkmoffa * Cantera/src/IdealGasPhase.h, Cantera/src/ThermoPhase.h, Cantera/src/thermo/DebyeHuckel.h, Cantera/src/thermo/WaterPropsIAPWS.cpp, Cantera/src/thermo/WaterPropsIAPWS.h, Cantera/src/thermo/WaterPropsIAPWSphi.h, Cantera/src/thermo/WaterSSTP.cpp, Cantera/src/thermo/WaterSSTP.h, test_problems/cathermo/testWaterTP/output_blessed.txt, test_problems/cathermo/testWaterTP/testWaterSSTP.cpp, test_problems/cathermo/testWaterTP/waterTPphase.xml: WaterSSTP update Worked on doxygen documentation Changed the XML definition Worked on making it fall in line with other ThermoPhase objects. 2007-03-15 16:09 hkmoffa * Cantera/src/thermo/WaterSSTP.cpp, Cantera/src/thermo/WaterSSTP.h, tools/doc/Cantera.cfg.in: doxygen update Changed the name of WaterTP to WaterSSTP in a few places. 2007-03-15 15:56 hkmoffa * Cantera/src/ThermoPhase.h, Cantera/src/thermo/IdealSolidSolnPhase.cpp, Cantera/src/thermo/IdealSolidSolnPhase.h, Cantera/src/thermo/Makefile.in, Cantera/src/thermo/SingleSpeciesTP.cpp, Cantera/src/thermo/SingleSpeciesTP.h, Cantera/src/thermo/WaterPropsIAPWS.cpp, Cantera/src/thermo/WaterPropsIAPWS.h, Cantera/src/thermo/WaterPropsIAPWSphi.cpp, Cantera/src/thermo/WaterPropsIAPWSphi.h, Cantera/src/thermo/WaterSSTP.cpp, Cantera/src/thermo/WaterSSTP.h, Cantera/src/thermo/WaterTP.cpp, Cantera/src/thermo/WaterTP.h, ext/f2c_libs/arith.h, test_problems/cathermo/testIAPWSPres/output_blessed.txt, test_problems/cathermo/testIAPWSPres/runtest, test_problems/cathermo/testWaterTP/.cvsignore, test_problems/cathermo/testWaterTP/Makefile.in, test_problems/cathermo/testWaterTP/output_blessed.txt, test_problems/cathermo/testWaterTP/runtest, test_problems/cathermo/testWaterTP/testWaterSSTP.cpp, test_problems/cathermo/testWaterTP/testWaterTP.cpp: Changed the WaterTP class to WaterSSTP, which now inherits from SingleSpeciesTP, as it should Fixed an error in pressure calculation within WaterSSTP. Added more function calls to the test problem for WaterSSTP. 2007-03-14 08:17 hkmoffa * configure, configure.in, Cantera/src/IdealGasPhase.h, Cantera/src/SurfPhase.h, Cantera/src/thermo/WaterTP.cpp, Cantera/src/thermo/WaterTP.h, test_problems/Makefile.in, test_problems/cathermo/testWaterTP/output_blessed.txt, test_problems/cathermo/testWaterTP/testWaterTP.cpp, test_problems/pureFluidTest/.cvsignore, test_problems/pureFluidTest/Makefile.in, test_problems/pureFluidTest/liquidvapor.xml, test_problems/pureFluidTest/output_blessed.txt, test_problems/pureFluidTest/runtest, test_problems/pureFluidTest/testPureWater.cpp: Test Suite Update -> Added a pureFluidTest problem that only gets carried out if the WIT_PURE_FLUIDS conditional compile takes place. -> added more to testWaterTP, so that it queries the unstable water region up to the spinodal curve. 2007-03-13 08:55 hkmoffa * Cantera/src/: IdealGasPhase.h, SurfPhase.h, equil.h, equilibrate.cpp: Doxygen update Finished documenting IdealGasPhase Started documenting equilibrium solvers 2007-03-12 17:58 hkmoffa * Cantera/src/IdealGasPhase.cpp, Cantera/src/IdealGasPhase.h, Cantera/src/SpeciesThermo.h, Cantera/src/ThermoPhase.h, Cantera/src/equil.h, tools/doc/Cantera.cfg.in: doxygen update Started writing header info for IdealGasPhase 2007-03-12 08:16 hkmoffa * Cantera/src/PureFluidPhase.h, Cantera/src/SpeciesThermo.h, Cantera/src/SurfPhase.h, Cantera/src/ThermoPhase.h, Cantera/src/thermo/WaterTP.cpp, Cantera/src/thermo/WaterTP.h, tools/doc/Cantera.cfg.in, tools/doc/doxyinput/thermo.txt: doxygen update Added PureFluidPhase and WaterTP 2007-03-11 18:12 hkmoffa * Cantera/src/ConstDensityThermo.h, Cantera/src/Kinetics.cpp, Cantera/src/Kinetics.h, Cantera/src/NasaThermo.h, Cantera/src/Phase.h, Cantera/src/ThermoPhase.h, Cantera/src/units.h, Cantera/src/thermo/DebyeHuckel.cpp, Cantera/src/thermo/DebyeHuckel.h, Cantera/src/thermo/SingleSpeciesTP.h, Cantera/src/thermo/VPStandardStateTP.h, Cantera/src/thermo/WaterPropsIAPWS.cpp, Cantera/src/thermo/WaterPropsIAPWS.h, Cantera/src/thermo/WaterPropsIAPWSphi.cpp, Cantera/src/thermo/WaterPropsIAPWSphi.h, tools/doc/Cantera.cfg.in: Fixed some errors in DebyeHuckel that weren't covered by test suite (partial molar enthalpy and heat capacity) Doxygen update - added private functions and added some water property files. 2007-03-11 12:46 hkmoffa * Cantera/src/ConstDensityThermo.h, Cantera/src/ThermoPhase.h, Cantera/src/thermo/DebyeHuckel.cpp, Cantera/src/thermo/DebyeHuckel.h, Cantera/src/thermo/IdealMolalSoln.h, examples/cxx/Makefile.in, test_problems/ChemEquil_gri_matrix/Makefile.in, test_problems/ChemEquil_gri_pairs/Makefile.in, test_problems/ChemEquil_ionizedGas/Makefile.in, test_problems/ChemEquil_red1/Makefile.in, test_problems/cathermo/DH_graph_1/Makefile.in, test_problems/cathermo/DH_graph_NM/Makefile.in, test_problems/cathermo/DH_graph_Pitzer/Makefile.in, test_problems/cathermo/DH_graph_acommon/Makefile.in, test_problems/cathermo/DH_graph_bdotak/Makefile.in, test_problems/cathermo/HMW_graph_CpvT/Makefile.in, test_problems/cathermo/HMW_graph_GvI/Makefile.in, test_problems/cathermo/HMW_graph_GvT/Makefile.in, test_problems/cathermo/HMW_graph_HvT/Makefile.in, test_problems/cathermo/HMW_graph_VvT/Makefile.in, test_problems/cathermo/HMW_test_1/Makefile.in, test_problems/cathermo/HMW_test_3/Makefile.in, test_problems/cathermo/ims/Makefile.in, test_problems/cathermo/issp/Makefile.in, test_problems/cathermo/stoichSubSSTP/Makefile.in, test_problems/cathermo/testIAPWS/Makefile.in, test_problems/cathermo/testIAPWSPres/Makefile.in, test_problems/cathermo/testIAPWSTripP/Makefile.in, test_problems/cathermo/testWaterPDSS/Makefile.in, test_problems/cathermo/testWaterTP/Makefile.in, test_problems/diamondSurf/Makefile.in, test_problems/fracCoeff/Makefile.in, test_problems/negATest/Makefile.in, test_problems/silane_equil/Makefile.in, test_problems/surfkin/Makefile.in, tools/doc/Cantera.cfg.in: Doxygen update: Added info to DebyeHuckel. It's getting to be near a documented state. test suite fix: fixed Makefile.in's. The .depends were not being included in the Makefiles. It should now be more stable. 2007-03-09 13:04 hkmoffa * configure, configure.in, Cantera/src/Makefile.in, Cantera/src/thermo/DebyeHuckel.cpp, Cantera/src/thermo/DebyeHuckel.h, Cantera/src/thermo/HMWSoln.cpp, Cantera/src/thermo/HMWSoln.h, Cantera/src/thermo/IdealMolalSoln.cpp, Cantera/src/thermo/IdealMolalSoln.h, Cantera/src/thermo/Makefile.in, Cantera/src/thermo/VPStandardStateTP.h, test_problems/cathermo/Makefile.in, test_problems/cathermo/DH_graph_1/.cvsignore, test_problems/cathermo/DH_graph_1/DH_NaCl.xml, test_problems/cathermo/DH_graph_1/DH_NaCl_NM.xml, test_problems/cathermo/DH_graph_1/DH_NaCl_NM_blessed.csv, test_problems/cathermo/DH_graph_1/DH_NaCl_Pitzer.xml, test_problems/cathermo/DH_graph_1/DH_NaCl_Pitzer_blessed.csv, test_problems/cathermo/DH_graph_1/DH_NaCl_acommon.xml, test_problems/cathermo/DH_graph_1/DH_NaCl_acommon_blessed.csv, test_problems/cathermo/DH_graph_1/DH_NaCl_bdotak.xml, test_problems/cathermo/DH_graph_1/DH_NaCl_bdotak_blessed.csv, test_problems/cathermo/DH_graph_1/DH_NaCl_blessed.csv, test_problems/cathermo/DH_graph_1/runtest, test_problems/cathermo/DH_graph_NM/.cvsignore, test_problems/cathermo/DH_graph_NM/DH_NaCl_NM.xml, test_problems/cathermo/DH_graph_NM/DH_NaCl_NM_blessed.csv, test_problems/cathermo/DH_graph_NM/DH_graph_1.cpp, test_problems/cathermo/DH_graph_NM/Makefile.in, test_problems/cathermo/DH_graph_NM/runtest, test_problems/cathermo/DH_graph_Pitzer/.cvsignore, test_problems/cathermo/DH_graph_Pitzer/DH_NaCl_Pitzer.xml, test_problems/cathermo/DH_graph_Pitzer/DH_NaCl_Pitzer_blessed.csv, test_problems/cathermo/DH_graph_Pitzer/DH_graph_1.cpp, test_problems/cathermo/DH_graph_Pitzer/Makefile.in, test_problems/cathermo/DH_graph_Pitzer/runtest, test_problems/cathermo/DH_graph_acommon/.cvsignore, test_problems/cathermo/DH_graph_acommon/DH_NaCl_acommon.xml, test_problems/cathermo/DH_graph_acommon/DH_NaCl_acommon_blessed.csv, test_problems/cathermo/DH_graph_acommon/DH_graph_1.cpp, test_problems/cathermo/DH_graph_acommon/Makefile.in, test_problems/cathermo/DH_graph_acommon/runtest, test_problems/cathermo/DH_graph_bdotak/.cvsignore, test_problems/cathermo/DH_graph_bdotak/DH_NaCl_bdotak.xml, test_problems/cathermo/DH_graph_bdotak/DH_NaCl_bdotak_blessed.csv, test_problems/cathermo/DH_graph_bdotak/DH_graph_1.cpp, test_problems/cathermo/DH_graph_bdotak/Makefile.in, test_problems/cathermo/DH_graph_bdotak/runtest, test_problems/cathermo/HMW_graph_GvI/runtest, test_problems/cathermo/HMW_test_1/HMW_test_1.cpp, test_problems/cathermo/HMW_test_1/Makefile.in, test_problems/cathermo/HMW_test_1/runtest, test_problems/cathermo/HMW_test_3/.cvsignore, test_problems/cathermo/HMW_test_3/HMW_test_3.cpp, test_problems/cathermo/HMW_test_3/output_noD_blessed.txt, test_problems/cathermo/HMW_test_3/runtest, test_problems/cathermo/ims/output_blessed.txt: Worked on VPStandardStateTP some more Fixed an error in IdealMolalSoln -> density wasn't beeing recalculated. Updated the test problem with the fix. Worked CANTERA_DEBUG_MODE into the Makefiles. It wasn't being used. Split the multiproblem DH_graph_1 test into multiple directories, one per test Worked on getting all of the test problems to have the same look, feel, and printout. 2007-03-08 10:23 hkmoffa * Cantera/src/thermo/DebyeHuckel.cpp, Cantera/src/thermo/DebyeHuckel.h, Cantera/src/thermo/HMWSoln.cpp, Cantera/src/thermo/HMWSoln.h, Cantera/src/thermo/IdealMolalSoln.cpp, Cantera/src/thermo/IdealMolalSoln.h, Cantera/src/thermo/SingleSpeciesTP.h, Cantera/src/thermo/VPStandardStateTP.cpp, Cantera/src/thermo/VPStandardStateTP.h, test_problems/cathermo/DH_graph_1/runtest: Work on VPStandardStateTP. Started to formalize what it actually does, putting in doxygen documentation. Tried to fix some holes in DebyeHuckel wherein calculations may be returned without updating the underlying water standard state. 2007-03-06 09:14 hkmoffa * Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h: Doxygen update - Worked on the equation section. 2007-03-05 13:02 hkmoffa * Cantera/src/: State.h, thermo/DebyeHuckel.cpp, thermo/DebyeHuckel.h: Doxygen update Filled in some more holes into DebyeHuckel.h Eliminated the warning messages. Still more work to be done. 2007-03-05 08:36 hkmoffa * Cantera/src/: ThermoPhase.h, thermo/DebyeHuckel.cpp, thermo/DebyeHuckel.h, thermo/HMWSoln.h, thermo/IdealMolalSoln.h, thermo/VPStandardStateTP.h: Doxygen update Added more equations in DebyeHuckel. 2007-03-04 17:01 hkmoffa * Cantera/src/: IdealGasPhase.cpp, IdealGasPhase.h, ThermoPhase.h, thermo/DebyeHuckel.cpp, thermo/DebyeHuckel.h, thermo/HMWSoln.h, thermo/MolalityVPSSTP.cpp, thermo/MolalityVPSSTP.h: Doxygen update - Added DebyeHuckel to doxygen. There are still unfilled entries Started filling in how the Molality formulation is carried out. 2007-02-28 14:17 hkmoffa * Cantera/src/ThermoPhase.h, Cantera/src/thermo/DebyeHuckel.cpp, Cantera/src/thermo/DebyeHuckel.h, Cantera/src/thermo/StoichSubstanceSSTP.h, tools/doc/Cantera.cfg.in: Added getStandardVolumes_ref() to ThermoPhase.h I had started to put similar routines in in child routines, but it deserves to be here to fill out the suite. Added DebyeHuckel to doxygen - unfinished. took out getSpeciesMolarVolume() from DebyeHuckel. 2007-02-27 19:00 hkmoffa * Cantera/src/NasaPoly1.h, Cantera/src/StoichSubstance.h, Cantera/src/SurfPhase.h, Cantera/src/ThermoPhase.h, Cantera/src/importCTML.cpp, Cantera/src/importCTML.h, Cantera/src/thermo/StoichSubstanceSSTP.cpp, Cantera/src/thermo/StoichSubstanceSSTP.h, test_problems/cathermo/Makefile.in, test_problems/cathermo/stoichSubSSTP/.cvsignore, test_problems/cathermo/stoichSubSSTP/Makefile.in, test_problems/cathermo/stoichSubSSTP/NaCl_Solid.xml, test_problems/cathermo/stoichSubSSTP/TemperatureTable.h, test_problems/cathermo/stoichSubSSTP/output_blessed.txt, test_problems/cathermo/stoichSubSSTP/runtest, test_problems/cathermo/stoichSubSSTP/sortAlgorithms.cpp, test_problems/cathermo/stoichSubSSTP/sortAlgorithms.h, test_problems/cathermo/stoichSubSSTP/stoichSubSSTP.cpp, tools/doc/Cantera.cfg.in: Doxygen update for StoichSubstanceSSTP Added test problem for StoichSubstanceSSTP. 2007-02-23 16:51 hkmoffa * Cantera/src/EdgePhase.h, Cantera/src/ThermoPhase.h, Cantera/src/thermo/HMWSoln.cpp, Cantera/src/thermo/HMWSoln.h, test_problems/Makefile.in, test_problems/ChemEquil_gri_matrix/.cvsignore, test_problems/ChemEquil_gri_pairs/.cvsignore, test_problems/ChemEquil_ionizedGas/.cvsignore, test_problems/ChemEquil_red1/.cvsignore, test_problems/cathermo/HMW_test_1/.cvsignore, test_problems/cathermo/HMW_test_1/HMW_test_1.cpp, test_problems/cathermo/HMW_test_1/output_noD_blessed.txt, test_problems/cathermo/HMW_test_1/runtest, test_problems/min_python/negATest/.cvsignore, test_problems/python/.cvsignore, tools/doc/Cantera.cfg.in: doxygen update: Added EdgePhase Worked on test suite: HMW_Test_1 passes now whether Debug_Mode is turned on or not. 2007-02-23 08:52 hkmoffa * Cantera/src/IdealGasPhase.h, Cantera/src/SurfPhase.cpp, Cantera/src/SurfPhase.h, Cantera/src/ThermoPhase.h, Cantera/src/importCTML.cpp, test_problems/diamondSurf/Makefile.in, test_problems/diamondSurf/runDiamond.cpp, tools/doc/Cantera.cfg.in: Doxygen update for SurfPhase Also added a Surfphase(XML_node &) constructor. 2007-02-20 06:37 dggoodwin * ext/tpx/: CFluid.cpp, CFluid.h, CGas.cpp, CLK.cpp, CLK.h, ck_gas.cpp, ck_gas.h: removed old unused files 2007-02-19 18:00 hkmoffa * Cantera/src/IdealGasPhase.cpp, Cantera/src/IdealGasPhase.h, Cantera/src/ShomateThermo.h, Cantera/src/SpeciesThermo.h, Cantera/src/SpeciesThermoInterpType.h, Cantera/src/SpeciesThermoMgr.h, Cantera/src/ThermoPhase.h, Cantera/src/global.h, test_problems/Makefile.in, test_problems/python/Makefile.in, tools/doc/Cantera.cfg.in: Doxygen update: Added IdealGasPhase to doxygen Filled in a couple of missing functions in IdealGasPhase Fixed clean rule and depends rule in test_problems 2007-02-17 14:34 dggoodwin * Cantera/src/oneD/Domain1D.h: bug fix 2007-02-17 03:35 dggoodwin * Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/importCTML.cpp, Cantera/src/stringUtils.cpp, win32/vc7/cantera.sln, win32/vc7/SetupCantera/SetupCantera.vdproj, win32/vc7/SetupCantera/SetupCanteraLite.vdproj, win32/vc7/Sundials/CVODES/CVODES.vcproj, win32/vc7/Sundials/NVEC_SER/NVEC_SER.vcproj, win32/vc7/Sundials/SUNDIALS_SHARED/SUNDIALS_SHARED.vcproj, win32/vc7/cantera/cantera.vcproj, win32/vc7/ck2cti/ck2cti.vcproj, win32/vc7/clib/clib.vcproj, win32/vc7/config_h/config_h.vcproj, win32/vc7/converters/converters.vcproj, win32/vc7/ctmatlab/ctmatlab.vcproj, win32/vc7/ctpython/ctpython.vcproj, win32/vc7/cxxutils/cxxutils.vcproj, win32/vc7/f2c_blas/f2c_blas.vcproj, win32/vc7/f2c_lapack/f2c_lapack.vcproj, win32/vc7/f2c_libs/f2c_libs.vcproj, win32/vc7/f2c_math/f2c_math.vcproj, win32/vc7/oneD/oneD.vcproj, win32/vc7/tpx/tpx.vcproj, win32/vc7/transport/transport.vcproj, win32/vc7/zeroD/zeroD.vcproj: changes for Windows 2007-02-17 02:48 dggoodwin * Cantera/clib/src/ctxml.cpp, Cantera/clib/src/ctxml.h, Cantera/python/Cantera/Interface.py, Cantera/python/Cantera/XML.py, Cantera/python/Cantera/importFromFile.py, Cantera/python/Cantera/solution.py, Cantera/python/src/ctxml_methods.cpp, Cantera/src/global.h, Cantera/src/transport/TransportFactory.cpp, ext/f2c_libs/arith.h, tools/src/cti2ctml.cpp: added debug flag 2007-02-16 16:10 dggoodwin * Cantera/src/ctml.h: added debug flag 2007-02-16 16:09 dggoodwin * Cantera/src/: ct2ctml.cpp, misc.cpp: added debug flag, changed log file to be written to tmpDir() 2007-02-16 15:35 hkmoffa * Cantera/src/ConstCpPoly.cpp, Cantera/src/ConstCpPoly.h, Cantera/src/GeneralSpeciesThermo.cpp, Cantera/src/Mu0Poly.cpp, Cantera/src/Mu0Poly.h, Cantera/src/SpeciesThermoInterpType.h, tools/doc/Cantera.cfg.in: Doxygen update of Mu0Poly and ConstCpPoly 2007-02-16 13:09 hkmoffa * Cantera/src/GeneralSpeciesThermo.cpp, Cantera/src/GeneralSpeciesThermo.h, Cantera/src/NasaPoly1.h, Cantera/src/NasaPoly2.h, Cantera/src/SpeciesThermo.h, tools/doc/Cantera.cfg.in: Doxygen update Worked on including GeneralSpeciesThermo 2007-02-16 09:03 hkmoffa * Cantera/src/GeneralSpeciesThermo.cpp, Cantera/src/GeneralSpeciesThermo.h, Cantera/src/NasaPoly1.h, Cantera/src/NasaThermo.h, Cantera/src/ShomatePoly.h, Cantera/src/ShomateThermo.h, Cantera/src/SimpleThermo.h, Cantera/src/SpeciesThermo.h, Cantera/src/SpeciesThermoInterpType.h, Cantera/src/SpeciesThermoMgr.h, test_problems/diamondSurf/runtest, tools/doc/Cantera.cfg.in: Doxygen additions - Focused on documenting the Shomate Polynomials. 2007-02-14 09:43 hkmoffa * Cantera/src/: GeneralSpeciesThermo.cpp, GeneralSpeciesThermo.h, NasaThermo.h, ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h, SpeciesThermoMgr.h, transport/TransportBase.h: Made the function reportParams() in the SpeciesThermo class a const function. Added "None" to TransportBase.h. I think I had taken it out inadvertently from one of the other .h files. It's needed here to specify no transport. (maybe time for using enums) 2007-02-13 16:51 hkmoffa * tools/doc/Cantera.cfg.in: Added nasa polynomials. 2007-02-13 16:51 hkmoffa * Cantera/src/: NasaPoly1.h, NasaPoly2.h, NasaThermo.h, SpeciesThermo.h, SpeciesThermoInterpType.h: Doxygen update: Added Nasa polynomial routines to doxygen docs. 2007-02-13 07:44 hkmoffa * tools/doc/: Cantera.cfg.in, doxyinput/exceptions.txt: Added files. 2007-02-13 07:43 hkmoffa * Cantera/src/: GeneralSpeciesThermo.h, NasaThermo.h, SpeciesThermo.h, SpeciesThermoFactory.cpp, SpeciesThermoFactory.h, SpeciesThermoInterpType.h, SpeciesThermoMgr.h, speciesThermoTypes.h: Doxygen update Starting documenting the species standard state routines. 2007-02-12 15:53 hkmoffa * Cantera/src/ct2ctml.cpp: Fixed an error on linux. The quotes around the path names now only occur in strings that will be processed by shells. The shells will strip the double quotes. 2007-02-11 09:09 dggoodwin * Cantera/src/ct2ctml.cpp: added support for Python and temp directory paths that contain spaces 2007-02-11 08:27 dggoodwin * Cantera/src/oneD/: Domain1D.h, OneDim.cpp: added option to specify domain bandwidths 2007-02-10 05:54 dggoodwin * Cantera/fortran/src/: cantera_thermo.f90, fct_interface.f90: updated equilibrate to use 2-character string rather than an integer. 2007-02-09 14:12 hkmoffa * tools/doc/Cantera.cfg.in: Added ThermoFactory. 2007-02-09 14:12 hkmoffa * Cantera/src/: ThermoFactory.cpp, ThermoFactory.h: Doxygen update -> Added ThermoFactory 2007-02-09 09:49 hkmoffa * tools/doc/Cantera.cfg.in: Added importPhase 2007-02-09 09:48 hkmoffa * Cantera/src/: KineticsFactory.cpp, ThermoPhase.h, global.h, importCTML.cpp, importCTML.h: Added the importPhase functions to doxygen. No code changes. 2007-02-08 08:54 hkmoffa * Cantera/src/: ThermoPhase.h, thermo/VPStandardStateTP.cpp, thermo/VPStandardStateTP.h: Doxygen update ov VPStandardStateTP. Took out unnecessary member functions and doxygen documentation. Changed _updateStandardStateThermo() and _updateRefStateThermo() to virtual protected functions, which is a necessary condition for them to be useful. 2007-02-07 13:27 hkmoffa * tools/doc/Cantera.cfg.in: Added some files. 2007-02-07 13:26 hkmoffa * Cantera/src/: ThermoPhase.cpp, ThermoPhase.h, importCTML.cpp, thermo/SingleSpeciesTP.cpp, thermo/SingleSpeciesTP.h: Doxygen update. Added SingleSpeciesTP to doxygen. I took out overloaded functions that weren't doing anything. 2007-02-02 11:24 dggoodwin * Cantera/src/: ct2ctml.cpp, misc.cpp: windows bug fixes by Bert Bell 2007-01-31 17:14 hkmoffa * Cantera/src/Constituents.cpp, Cantera/src/Constituents.h, Cantera/src/Elements.cpp, Cantera/src/Elements.h, Cantera/src/Kinetics.h, Cantera/src/Phase.cpp, Cantera/src/Phase.h, Cantera/src/State.h, Cantera/src/ThermoPhase.h, Cantera/src/ct_defs.h, Cantera/src/global.h, Cantera/src/logger.h, Cantera/src/units.h, Cantera/src/utilities.h, Cantera/src/thermo/IdealMolalSoln.cpp, Cantera/src/thermo/IdealMolalSoln.h, Cantera/src/thermo/IdealSolidSolnPhase.h, Cantera/src/thermo/MolalityVPSSTP.cpp, Cantera/src/thermo/MolalityVPSSTP.h, Cantera/src/thermo/VPStandardStateTP.h, tools/doc/Cantera.cfg.in: doxygen update. This commit doesn't change any code. Only the doxygen related documentation has been updated. The warning levels from doxygen have been increased, so that undocumented parameters now cause a warning to be issued. This commit eliminates these warning messages. 2007-01-31 08:26 hkmoffa * Cantera/src/thermo/: IdealGasPDSS.cpp, IdealGasPDSS.h: Added these files. The objects are under construction. 2007-01-27 08:54 dggoodwin * Cantera/src/: BasisOptimize.cpp, misc.cpp: misc fixes 2007-01-26 13:36 hkmoffa * Cantera/src/Constituents.h, Cantera/src/GasKineticsWriter.h, Cantera/src/Kinetics.h, Cantera/src/Phase.h, Cantera/src/State.h, Cantera/src/ThermoPhase.h, Cantera/src/ct_defs.h, Cantera/src/ctml.cpp, Cantera/src/global.h, Cantera/src/logger.h, Cantera/src/misc.cpp, Cantera/src/units.h, Cantera/src/utilities.h, Cantera/src/thermo/IdealMolalSoln.cpp, Cantera/src/thermo/IdealMolalSoln.h, Cantera/src/thermo/IdealSolidSolnPhase.h, Cantera/src/thermo/MolalityVPSSTP.cpp, Cantera/src/thermo/MolalityVPSSTP.h, Cantera/src/thermo/VPStandardStateTP.h, tools/doc/Cantera.cfg.in: Doxygen update I upped the warning levels within doxygen and then filled in the missing information within the currently covered files. I also created a few more doxygen modules, aiming towards getting 100% coverage of classes within at least one doxygen module. My hope here is to start adding doxygen documentation for the strong electrolyte thermodynamics in the near future. 2007-01-24 16:12 hkmoffa * Cantera/src/Kinetics.cpp, Cantera/src/ThermoPhase.cpp, Cantera/src/ctexceptions.h, Cantera/src/global.h, Cantera/src/misc.cpp, Cantera/src/thermo/IdealSolidSolnPhase.cpp, Cantera/src/thermo/MolalityVPSSTP.cpp, Cantera/src/thermo/VPStandardStateTP.cpp, tools/doc/doxyinput/thermo.txt: Doxygen update: I worked on upgrading the Cantera Error Handling section and I eliminated all of the doxygen warning messages that I encountered. 2007-01-12 15:42 hkmoffa * test_problems/: ChemEquil_ionizedGas/ionizedGasEquil.cpp, ChemEquil_ionizedGas/output_blessed.txt, ChemEquil_red1/basopt_red1.cpp: Small changes to rebaseline against results. 2007-01-12 15:41 hkmoffa * Cantera/src/: BasisOptimize.cpp, ChemEquil.cpp, ChemEquil.h, MultiPhase.h, ThermoPhase.cpp, ThermoPhase.h, sort.cpp, stringUtils.cpp, stringUtils.h, thermo/DebyeHuckel.h, thermo/HMWSoln.h, thermo/IdealMolalSoln.h, thermo/MolalityVPSSTP.h, zeroD/.cvsignore: Changed the estimateEP_Brinkley convergence criteria to more stringent than the main convergence criteria in equilibrium(). This was necessary to avoid another nonconvergence case. You don't want equilibrate() routine's matrix algorithm to handle ill-conditioned matrices. Changed the storage of element potentials. Now, dimensionless element potentials are storred, instead of dimensional one. There is less dependence on temperature. All debugging print statements now use Cantera's writelog() utility. 2007-01-01 16:32 hkmoffa * test_problems/Makefile.in, configure, configure.in: Added another test. 2007-01-01 16:31 hkmoffa * test_problems/ChemEquil_red1/: .cvsignore, Makefile.in, basopt_red1.cpp, output_blessed.txt, red1.xml, runtest: Added a test for nComponents < number of elements 2007-01-01 16:30 hkmoffa * Cantera/src/ChemEquil.cpp: Changes to handle systems where the number of components is less than the number of elements. 2007-01-01 13:24 hkmoffa * configure, configure.in: Added a new test. 2007-01-01 13:24 hkmoffa * test_problems/Makefile.in: Added a new test 2007-01-01 13:23 hkmoffa * test_problems/ChemEquil_ionizedGas/: .cvsignore, Makefile.in, air_below6000K.cti, air_below6000K.xml, ionizedGasEquil.cpp, output_blessed.txt, runtest: Added new test for ionized species. 2007-01-01 13:20 hkmoffa * Cantera/src/: BasisOptimize.cpp, ChemEquil.cpp, ChemEquil.h, ThermoPhase.cpp: Modification to some of the ChemEquil algorithms to handle charged species effectively and to handle equilibrium situations where the number of components is less than the number of elements. 2006-12-14 12:51 hkmoffa * Cantera/src/: IdealGasPhase.cpp, State.cpp, oneD/Domain1D.cpp, zeroD/Wall.cpp: solaris port std:: additions 2006-12-14 10:47 hkmoffa * examples/cxx/Makefile.in: solaris port CXX_depends addition 2006-12-14 10:46 hkmoffa * ext/: f2c_blas/Makefile.in, f2c_lapack/Makefile.in, f2c_libs/arith.h, f2c_libs/f2c.h, f2c_math/Makefile.in, f2c_recipes/Makefile.in, tpx/Makefile.in: solaris port CXX_DEPENDS variable addition 2006-12-14 10:43 hkmoffa * test_problems/: ChemEquil_gri_matrix/Makefile.in, ChemEquil_gri_pairs/Makefile.in, cathermo/DH_graph_1/Makefile.in, cathermo/HMW_graph_CpvT/Makefile.in, cathermo/HMW_graph_GvI/Makefile.in, cathermo/HMW_graph_GvT/Makefile.in, cathermo/HMW_graph_HvT/Makefile.in, cathermo/HMW_graph_VvT/Makefile.in, cathermo/HMW_test_1/Makefile.in, cathermo/HMW_test_3/Makefile.in, cathermo/ims/Makefile.in, cathermo/issp/Makefile.in, cathermo/testIAPWS/Makefile.in, cathermo/testIAPWSPres/Makefile.in, cathermo/testIAPWSTripP/Makefile.in, cathermo/testWaterPDSS/Makefile.in, cathermo/testWaterTP/Makefile.in, diamondSurf/Makefile.in, fracCoeff/Makefile.in, min_python/minDiamond/Makefile.in, min_python/negATest/Makefile.in, negATest/Makefile.in, silane_equil/Makefile.in, surfkin/Makefile.in: solaris port added the CXX_DEPENDS variable. 2006-12-14 10:42 hkmoffa * Cantera/: clib/src/Makefile.in, cxx/demos/Makefile.in, cxx/src/Makefile.in, fortran/src/Makefile.in, matlab/Makefile.in, src/Makefile.in, src/converters/Makefile.in, src/oneD/Makefile.in, src/thermo/Makefile.in, src/transport/Makefile.in, src/zeroD/Makefile.in, user/Makefile.in: solaris port Added the @CXX_DEPENDS@ variable. 2006-12-14 10:40 hkmoffa * configure: Added CXX_DEPENDS 2006-12-14 10:39 hkmoffa * configure.in: solaris port: Added a CXX_DEPENDS variable. 2006-12-14 10:36 hkmoffa * Cantera/src/: ShomatePoly.h, ct_defs.h: solaris port std:: additions 2006-12-14 10:34 hkmoffa * Cantera/src/: LatticePhase.h, MultiPhase.h: solaris port 2006-12-14 10:32 hkmoffa * Cantera/src/: utilities.h, xml.h, InterfaceKinetics.h: solaris port std:: additions 2006-12-14 10:31 hkmoffa * Cantera/src/: Group.h, IdealGasPhase.h: solaris port std:: additions. 2006-12-14 10:29 hkmoffa * Cantera/src/: Func1.h, GasKinetics.h: solaris port std:: additions 2006-12-14 10:28 hkmoffa * Cantera/src/: StoichManager.h, ThermoPhase.h: solaris port std:: additions. 2006-12-14 10:24 hkmoffa * Cantera/src/: NasaPoly1.h, NasaPoly2.h: solaris port std:: additions 2006-12-14 10:17 hkmoffa * Cantera/src/: BandMatrix.h, ConstDensityThermo.h, EdgeKinetics.h: solaris port; std:: additions 2006-12-14 10:11 hkmoffa * Cantera/src/: logger.h, stringUtils.h: solaris port: std:: of exit() and atoi, atof 2006-12-14 10:07 hkmoffa * Cantera/src/State.h: solaris port: std::inner_product() 2006-12-14 10:04 hkmoffa * Cantera/src/transport/MultiTransport.h: solaris port: std::copy 2006-12-14 10:03 hkmoffa * Cantera/src/oneD/: Domain1D.h, Inlet1D.h: solaris port: std:: applied to copy() 2006-12-14 09:48 dggoodwin * Cantera/matlab/: setup_matlab.py.in, cantera/private/phasemethods.cpp, cantera/private/thermomethods.cpp: fixed minor bugs that kept toolbox from building under R2006b -- dont call mxGetPr with a char variable --. 2006-12-14 09:47 dggoodwin * configure.in, preconfig: improved detection of MATLAB 2006-12-14 08:53 hkmoffa * Cantera/src/oneD/StFlow.h: solaris port: sqrt to std:sqrt 2006-12-14 08:51 hkmoffa * Cantera/src/zeroD/FlowDevice.h: solaris port: std::copy 2006-12-14 08:46 hkmoffa * Cantera/src/Array.h: Added std:: to fill() command. solaris port issues 2006-12-11 18:23 hkmoffa * Cantera/src/: BasisOptimize.cpp, ChemEquil.cpp, ChemEquil.h, MultiPhase.h, MultiPhaseEquil.cpp: Upgraded the BasisOptimize file. It now has been tested a bit more. ElementRearrange() function has been added to it. ChemEquil has been upgraded. It now uses BasisOptimize. A better estimateElementPotentials() function has been installed that doesn't lead to as many stalls in the main algorithm. This is achieved by making sure that estimated mole fractions of component species are significant. Various tweaks to estimateEP_Brinkley() has been added. It now passes the gri30 test problem in the fuego_tabular_props application. 2006-12-11 10:42 hkmoffa * Cantera/src/BasisOptimize.cpp: Fixed a potential unsatisfied external, if someone were to define DEBUG_HKM. 2006-12-11 10:29 hkmoffa * Cantera/src/: BasisOptimize.cpp, ChemEquil.cpp, ChemEquil.h, Makefile.in, MultiPhase.cpp, MultiPhase.h: Utility commit: Fixed an error in ChemEquil.cpp where there was an overwrite of an array. Added a getMoles() command to MultiPhase object. Added the file BasisOptimize which calculates the number of components in a multiphase problem rigorously, using a QR factorization of the stoichiometric coefficent matrix, and calculates an optimized basis set of components using those species with the largest concentrations. It also calculates the formationRxnMatrix based on those components. This routine isn't hooked into anything yet. 2006-11-28 12:19 hkmoffa * test_problems/cathermo/: DH_graph_1/DH_graph_1.cpp, HMW_graph_CpvT/HMW_graph_CpvT.cpp, HMW_graph_GvI/HMW_graph_GvI.cpp, HMW_graph_HvT/HMW_graph_HvT.cpp, HMW_graph_VvT/HMW_graph_VvT.cpp, HMW_test_1/HMW_test_1.cpp, HMW_test_3/HMW_test_3.cpp: Added namespace std 2006-11-28 12:15 hkmoffa * test_problems/cathermo/HMW_graph_GvT/HMW_graph_GvT.cpp: added namespace std 2006-11-28 12:14 hkmoffa * test_problems/cathermo/testWaterTP/testWaterTP.cpp: Added namespace Cantera. 2006-11-28 12:13 hkmoffa * test_problems/cathermo/testWaterPDSS/testWaterPDSS.cpp: Eliminated unused variables. 2006-11-28 12:11 hkmoffa * test_problems/min_python/negATest/negATest.cpp: Added the namespace std; 2006-11-28 10:44 hkmoffa * Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h, HMWSoln_input.cpp, IdealMolalSoln.cpp, IdealMolalSoln.h, IdealSolidSolnPhase.h, MolalityVPSSTP.cpp, MolalityVPSSTP.h, PDSS.cpp, PDSS.h, SingleSpeciesTP.cpp, SingleSpeciesTP.h, VPStandardStateTP.cpp, VPStandardStateTP.h, WaterPDSS.cpp, WaterPDSS.h, WaterTP.cpp, WaterTP.h: Uupdaetd the structure of the namespaces so that it would compile. 2006-11-28 10:03 hkmoffa * Cantera/src/: CVode.h, ODE_integrators.cpp: Added namespace qualifiers to the string type. 2006-11-27 13:43 dggoodwin * ChangeLog, configure.in, preconfig, Cantera/clib/src/Cabinet.h, Cantera/clib/src/Storage.h, Cantera/clib/src/clib_defs.h, Cantera/clib/src/ct.cpp, Cantera/cxx/demos/example_utils.h, Cantera/cxx/demos/rankine.cpp, Cantera/cxx/include/Cantera.h, Cantera/cxx/include/Edge.h, Cantera/cxx/include/GRI30.h, Cantera/cxx/include/IdealGasMix.h, Cantera/cxx/include/IncompressibleSolid.h, Cantera/cxx/include/Interface.h, Cantera/cxx/include/Metal.h, Cantera/cxx/include/PureFluid.h, Cantera/cxx/include/importPhase.h, Cantera/cxx/include/zerodim.h, Cantera/cxx/src/cxxutils.cpp, Cantera/fortran/src/flib_defs.h, Cantera/src/Array.h, Cantera/src/ArrayViewer.h, Cantera/src/BandMatrix.cpp, Cantera/src/BandMatrix.h, Cantera/src/CVodesIntegrator.h, Cantera/src/Constituents.h, Cantera/src/DAE_Solver.h, Cantera/src/EdgeKinetics.h, Cantera/src/Elements.cpp, Cantera/src/Elements.h, Cantera/src/Enhanced3BConc.h, Cantera/src/FalloffMgr.h, Cantera/src/GasKinetics.h, Cantera/src/GeneralSpeciesThermo.h, Cantera/src/Group.cpp, Cantera/src/Group.h, Cantera/src/ImplicitSurfChem.cpp, Cantera/src/ImplicitSurfChem.h, Cantera/src/Integrator.h, Cantera/src/InterfaceKinetics.cpp, Cantera/src/InterfaceKinetics.h, Cantera/src/Kinetics.h, Cantera/src/KineticsFactory.cpp, Cantera/src/KineticsFactory.h, Cantera/src/LatticePhase.h, Cantera/src/LatticeSolidPhase.cpp, Cantera/src/LatticeSolidPhase.h, Cantera/src/Mu0Poly.cpp, Cantera/src/Mu0Poly.h, Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhase.h, Cantera/src/MultiPhaseEquil.cpp, Cantera/src/MultiPhaseEquil.h, Cantera/src/Phase.cpp, Cantera/src/Phase.h, Cantera/src/RateCoeffMgr.h, Cantera/src/ReactionData.h, Cantera/src/ReactionPath.cpp, Cantera/src/ReactionPath.h, Cantera/src/ReactionStoichMgr.cpp, Cantera/src/ReactionStoichMgr.h, Cantera/src/ResidEval.h, Cantera/src/RxnRates.h, Cantera/src/SpeciesThermo.h, Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/SpeciesThermoFactory.h, Cantera/src/SpeciesThermoMgr.h, Cantera/src/StoichManager.h, Cantera/src/SurfPhase.h, Cantera/src/ThermoFactory.cpp, Cantera/src/ThermoFactory.h, Cantera/src/ThermoPhase.cpp, Cantera/src/ThermoPhase.h, Cantera/src/ThirdBodyMgr.h, Cantera/src/ct2ctml.cpp, Cantera/src/ct_defs.h, Cantera/src/ctexceptions.h, Cantera/src/ctml.cpp, Cantera/src/ctml.h, Cantera/src/ctvector.h, Cantera/src/global.h, Cantera/src/importCTML.cpp, Cantera/src/importCTML.h, Cantera/src/logger.h, Cantera/src/misc.cpp, Cantera/src/phasereport.cpp, Cantera/src/plots.cpp, Cantera/src/plots.h, Cantera/src/polyfit.h, Cantera/src/speciesThermoTypes.h, Cantera/src/stringUtils.cpp, Cantera/src/stringUtils.h, Cantera/src/units.h, Cantera/src/vec_functions.h, Cantera/src/xml.h, Cantera/src/oneD/Domain1D.cpp, Cantera/src/oneD/Domain1D.h, Cantera/src/oneD/Inlet1D.h, Cantera/src/oneD/MultiNewton.cpp, Cantera/src/oneD/MultiNewton.h, Cantera/src/oneD/OneDim.cpp, Cantera/src/oneD/OneDim.h, Cantera/src/oneD/Resid1D.h, Cantera/src/oneD/Sim1D.cpp, Cantera/src/oneD/Sim1D.h, Cantera/src/oneD/Solid1D.h, Cantera/src/oneD/StFlow.cpp, Cantera/src/oneD/StFlow.h, Cantera/src/oneD/Surf1D.h, Cantera/src/oneD/boundaries1D.cpp, Cantera/src/oneD/newton_utils.cpp, Cantera/src/oneD/refine.h, Cantera/src/transport/DustyGasTransport.cpp, Cantera/src/transport/MMCollisionInt.cpp, Cantera/src/transport/MixTransport.cpp, Cantera/src/transport/MultiTransport.cpp, Cantera/src/transport/MultiTransport.h, Cantera/src/transport/SolidTransport.cpp, Cantera/src/transport/TransportBase.h, Cantera/src/transport/TransportFactory.cpp, Cantera/src/zeroD/ConstPressureReactor.cpp, Cantera/src/zeroD/ConstPressureReactor.h, Cantera/src/zeroD/FlowDevice.cpp, Cantera/src/zeroD/FlowDevice.h, Cantera/src/zeroD/FlowReactor.cpp, Cantera/src/zeroD/FlowReactor.h, Cantera/src/zeroD/Reactor.cpp, Cantera/src/zeroD/Reactor.h, Cantera/src/zeroD/ReactorBase.cpp, Cantera/src/zeroD/ReactorBase.h, Cantera/src/zeroD/ReactorFactory.cpp, Cantera/src/zeroD/ReactorFactory.h, Cantera/src/zeroD/ReactorNet.cpp, Cantera/src/zeroD/ReactorNet.h, Cantera/src/zeroD/Wall.cpp, Cantera/src/zeroD/Wall.h, Cantera/user/user.cpp, examples/cxx/example_utils.h, examples/cxx/examples.cpp, examples/cxx/kinetics_example1.cpp, ext/f2c_libs/arith.h, test_problems/ChemEquil_gri_matrix/gri_matrix.cpp, test_problems/ChemEquil_gri_pairs/gri_pairs.cpp, test_problems/negATest/negATest.cpp, test_problems/silane_equil/IdealGasMix.h, test_problems/silane_equil/silane_equil.cpp, test_problems/surfkin/Interface.h, test_problems/surfkin/surfdemo.cpp, tools/src/cti2ctml.cpp: removed using namespace statements from Cantera header files, and fully qualified most members of std (string, vector< >, etc.) in header files. User programs may need to have "using namespace" statements added. 2006-11-14 01:20 dggoodwin * Cantera/python/examples/reactors/surf_pfr.py: added pfr example 2006-11-14 01:18 dggoodwin * Cantera.README: Cantera.README no longer used 2006-11-14 00:40 dggoodwin * configure, configure.in, Cantera/src/MultiPhaseEquil.cpp: minor cleanup 2006-11-13 11:55 dggoodwin * Cantera/src/CVodesIntegrator.h, ext/f2c_libs/arith.h, win32/vc7/Sundials/CVODES/CVODES.vcproj, win32/vc7/Sundials/NVEC_SER/NVEC_SER.vcproj, win32/vc7/Sundials/SUNDIALS_SHARED/SUNDIALS_SHARED.vcproj, win32/vc7/cantera/cantera.vcproj: minor cleanup 2006-11-13 11:46 dggoodwin * win32/vc7/Sundials/sundials/sundials_config.h: added sundials_config.h so that users can build sundials without having to run configure 2006-11-13 08:39 dggoodwin * ChangeLog, preconfig, ext/f2c_libs/arith.h, test_problems/python/runtest: minor changes 2006-11-12 20:23 dggoodwin * License.rtf, preconfig, winconfig.h, ext/f2c_libs/arith.h: minor cleanup 2006-11-12 20:22 dggoodwin * win32/vc7/demos/: NASA_coeffs.vcproj, combustor.vcproj, flamespeed.vcproj, kinetics1.vcproj: added example project files 2006-11-12 20:21 dggoodwin * win32/vc7/: SetupCantera/SetupCantera.vdproj, SetupCantera/SetupCanteraLite.vdproj, cantera.sln, Sundials/CVODES/CVODES.vcproj, Sundials/CVODES_DENSE/CVODES_DENSE.vcproj, Sundials/IDA/IDA.vcproj, Sundials/KINSOL/KINSOL.vcproj, Sundials/NVEC_SER/NVEC_SER.vcproj, Sundials/SUNDIALS_SHARED/SUNDIALS_SHARED.vcproj, cantera/cantera.vcproj, demos/CanteraDemos.sln, demos/Rankine.vcproj, demos/demo.vcproj, zeroD/zeroD.vcproj: update of project files 2006-11-11 06:12 dggoodwin * win32/vc7/: cantera.sln, cantera_no_sundials.sln, SetupCantera/SetupCantera.vdproj, cantera/cantera.vcproj: added no_sundials version 2006-11-11 06:10 dggoodwin * win32/vc7/Sundials/: Sundials.sln, CVODES_DENSE/CVODES_DENSE.vcproj: added cvodes_dense 2006-11-11 05:23 dggoodwin * preconfig, Cantera/src/Makefile.in, Cantera/src/zeroD/Makefile.in: minor changes to how dependencies are handled in Makefiles 2006-11-10 17:38 dggoodwin * configure, configure.in: fixed null username 2006-11-10 17:37 dggoodwin * tools/src/finish_install.py.in: added writing PYTHONPATH to setup_Cantera for min_Python 2006-11-10 05:48 dggoodwin * Cantera/src/CVodesIntegrator.h: minor cleanup 2006-11-09 05:04 dggoodwin * Cantera/python/examples/fuel_cells/: sofc.cti, sofc.py: added fuel cell demo 2006-11-08 16:19 dggoodwin * Cantera/src/ThermoPhase.h: minor cleanup 2006-11-08 15:58 dggoodwin * Makefile.in, preconfig, Cantera/python/Cantera/OneD/onedim.py, ext/f2c_libs/arith.h: install Makefiles for python demos 2006-11-08 15:14 dggoodwin * Cantera/python/examples/: Makefile, equilibrium/Makefile, equilibrium/stoich.py, flames/Makefile, gasdynamics/Makefile, kinetics/Makefile, liquid_vapor/Makefile, misc/Makefile, reactors/Makefile, surface_chemistry/Makefile, transport/Makefile: added Makefiles to run all demos 2006-11-07 13:03 dggoodwin * Cantera/src/zeroD/ReactorNet.h: added verbose, setVerbose 2006-11-07 13:02 dggoodwin * Cantera/src/zeroD/ReactorBase.h: added setName 2006-11-07 05:47 dggoodwin * Cantera/src/: State.h, State.cpp: added method concentration(int k) 2006-11-06 07:27 dggoodwin * Cantera/cxx/demos/NASA_coeffs.cpp: added NASA polynomial example 2006-11-06 07:20 dggoodwin * Cantera/src/: Constituents.h, NasaPoly1.h, NasaThermo.h, SpeciesThermo.h, SpeciesThermoFactory.cpp, SpeciesThermoInterpType.h: added support for modifying NASA polynomial coefficients 2006-11-05 07:54 dggoodwin * data/inputs/methane_pox_on_pt.cti: added mechanism for partial oxidation of methane on platinum from the Deutschmann group 2006-11-03 12:45 dggoodwin * winconfig.h: updated 2006-11-03 12:44 dggoodwin * win32/vc7/Sundials/: CVODES/CVODES.vcproj, IDA/IDA.vcproj, KINSOL/KINSOL.vcproj, NVEC_SER/NVEC_SER.vcproj, SUNDIALS_SHARED/SUNDIALS_SHARED.vcproj: initial import 2006-11-02 17:32 dggoodwin * win32/vc7/SetupCantera/SetupCantera.vdproj, win32/vc7/SetupCantera/SetupCanteraLite.vdproj, win32/vc7/ctmatlab/runmlab.cmd, Cantera/python/winsetup.py, License.txt: updated for Cantera 1.7 2006-10-31 11:09 dggoodwin * Cantera/src/ReactionStoichMgr.cpp: fixed bug that resulted in incorrect computation of product concentration products when rxn has 4 or more product molecules and one or more has a stoich coeff > 1 2006-10-30 11:30 dggoodwin * configure, configure.in, preconfig, ext/f2c_libs/arith.h, tools/src/finish_install.py.in: modified for cygwin 2006-10-27 13:34 dggoodwin * configure, configure.in, tools/src/finish_install.py.in: mods for cygwin 2006-10-22 18:13 dggoodwin * Cantera/src/CVodesIntegrator.cpp: sundials version detection 2006-10-22 17:58 dggoodwin * preconfig: debug off is noe the default 2006-10-22 17:56 dggoodwin * Cantera/src/: ChemEquil.cpp, MultiPhaseEquil.cpp: moved declaration of nCutoff to avoid jumping over it, causing a compile failure with gcc 4.0.1 on linuxChemEquil.cpp 2006-10-22 17:51 dggoodwin * tools/templates/cxx/demo.mak.in: removed FLIBS 2006-10-20 14:56 hkmoffa * test_problems/min_python/Makefile.in: Added -s to make tests. 2006-10-20 14:55 hkmoffa * test_problems/cathermo/HMW_graph_GvI/.cvsignore: Added a file. 2006-10-20 14:54 hkmoffa * test_problems/fracCoeff/runtest: Added an exit variable. 2006-10-20 14:47 hkmoffa * test_problems/ChemEquil_gri_matrix/output_blessed.txt: Slight change to the blessed solution. 2006-10-20 14:43 hkmoffa * configure, configure.in, test_problems/Makefile.in: Added new test directories. 2006-10-20 14:42 hkmoffa * Cantera/src/sort.h: Added an Id stamp. 2006-10-20 14:41 hkmoffa * Cantera/src/misc.cpp: Fixed an error in the LogGroup system. 2006-10-20 14:40 hkmoffa * Cantera/src/ChemEquil.cpp: eliminated an unused variable. 2006-10-20 14:34 hkmoffa * Cantera/src/: ChemEquil.cpp, ChemEquil.h: Reworking of the solver algorithm within ChemEquil: Much of the algorithm for relaxing the element potentials to equilibrium employs the Brinkley algorithm (const T, P) (p. 129 Smith and Missen). This algorithm does better at relaxing the system towards steady state from a bad initial guess. The old algorithm now does the last little bit and it does the calculation for fixed pairs other than const T, P, using the Brinkley algorithm's initial guess. Modified the damping algorithm in the old method. It now doesn't create false convergence failures when it is close to the end of the calculation. The new solver has been tested against a matrix of initial conditions for the gri30 mechanism and a 200 species jp8 mechanism. Yet to do: This routine should work but has not been checked out against: phases with electric charge nonideal phases. This routine should probably not yet work with molality based phases. More work may have to be done with the Brinkley algorithm for problems which suffer from stoichiometric constraints. A full Gauss-Jordon elimination step should probably be added to flag cases where there are effective stoichiometric constraints. 2006-10-20 14:22 hkmoffa * Cantera/src/: equil.h, equilibrate.cpp: Added more error control and checking. This is needed for new test problems. 2006-10-20 14:20 hkmoffa * Cantera/src/MultiPhase.h: Added a couple of comments. 2006-10-20 14:19 hkmoffa * Cantera/src/: ThermoPhase.cpp, ThermoPhase.h: Change to the function getElementPotentials(). It now returns a boolean to indicate whether the object has element potentials or not. 2006-10-20 14:17 hkmoffa * Cantera/src/IdealGasPhase.cpp: Change to setToEquilState() to guard against inf results. 2006-10-20 14:12 hkmoffa * test_problems/ChemEquil_gri_matrix/: .cvsignore, Makefile.in, gri30.xml, gri_matrix.cpp, output_blessed.txt, runtest: Added another test program for the element potential equilibrium solver. This test does a matrix of T, pres, and mixture fraction for the gri30 mechanism. It does a total of 1500 calculation starting from a bad initial guess. 2006-10-20 14:09 hkmoffa * test_problems/ChemEquil_gri_pairs/: .cvsignore, Makefile.in, gri30.xml, gri_pairs.cpp, output_blessed.txt, runtest: Added another test for the element potential equilibrium solver. This test covers all pair options. 2006-10-20 14:06 hkmoffa * test_problems/silane_equil/output_blessed.txt: Changed the blessed file: printout has changed. 2006-10-10 09:02 dggoodwin * apps/bvp/: BoundaryValueProblem.h, README, blasius.cpp: initial import 2006-10-02 15:24 hkmoffa * Makefile.in: Added a file to the installed demo/cxx directory. It was needed so that the cxx files would compile out of the box. 2006-10-02 12:10 hkmoffa * Cantera/src/State.cpp: In the init() routine, I set the initial mass fraction vector so that it sums to one. Previously, it was set uniformly to zero. The mass fraction of species 0 is set to 1. This was noticed by a user, and may have resulted in seg faults before the ThermoPhase object was properly initialized. 2006-10-02 09:38 hkmoffa * Cantera/fortran/f77demos/f77demos.mak.in: Fixed the Makefile that gets used in the install directories. autoconf variables needed updating. 2006-08-29 09:49 hkmoffa * tools/testtools/csvdiff.cpp: Fixed an error for zero length files. 2006-08-27 17:19 hkmoffa * tools/testtools/csvdiff.cpp: Added default column titles, if none are supplied in the file. This avoids a seg fault. 2006-08-21 17:38 hkmoffa * Makefile.in: Changed a few of the install commands to install_tsc (time step check). These are needed in a few places so make doesn't do any extra work when it doesn't need to. Changed a few of the "install multiple files at once" cases into installations where one file is installed at a time. Some install commands, including the one that comes with cantera can only install one file at a time. 2006-08-21 17:34 hkmoffa * bin/install_tsc.in: Used the INSTALL_VERBOSE rule to check whether install can use the -v flag. If it can't echo is used to mimic its behavior. 2006-08-21 17:31 hkmoffa * configure, configure.in: Installed a rule to check if the install command uses the flag -v. I found an openbsd system where this was not the case. 2006-08-21 09:44 hkmoffa * Cantera/Makefile.in: Added user directory to a lot of the rules. Took out the cads directory. 2006-08-21 09:42 hkmoffa * Cantera/user/Makefile.in: Added an install rule to the Makefile 2006-08-19 17:18 hkmoffa * Cantera/cxx/demos/Makefile.in: Added depends include at the end of the file. 2006-08-19 17:17 hkmoffa * Cantera/cxx/Makefile.in: Fixed clean rules. 2006-08-19 17:14 hkmoffa * bin/.cvsignore: Added a file. 2006-08-19 17:13 hkmoffa * examples/cxx/kinetics_example3.cpp: Changed the name of the input routine to gri.xml from gri.ctml. This test is always run, so it must be run even if minimal python installation isn't done. Therefore, xml files must be used as input. 2006-08-19 17:11 hkmoffa * test_problems/min_python/minDiamond/runtest: Fixed the name of some environmental variables 2006-08-19 17:09 hkmoffa * test_problems/cathermo/HMW_test_1/HMW_test_1.cpp: Changed the #ifdef name 2006-08-19 17:00 hkmoffa * test_problems/cathermo/HMW_graph_VvT/: HMW_graph_VvT.cpp, Makefile.in, V_standalone.cpp, output_blessed.txt: Refined the regression test slightly, to make it less stringent. Added to make clean rule 2006-08-19 16:54 hkmoffa * test_problems/cathermo/HMW_graph_CpvT/: Cp_standalone.cpp, Makefile.in: Fixed warning messages and added to make clean rule 2006-08-19 16:52 hkmoffa * test_problems/cathermo/HMW_graph_HvT/: HMW_graph_HvT.cpp, L_standalone.cpp, Makefile.in: Got rid of warning messages and added to make clean rule 2006-08-19 16:48 hkmoffa * test_problems/cathermo/HMW_graph_GvT/Makefile.in: Added to the make clean rule 2006-08-19 11:15 hkmoffa * ext/f2c_libs/.cvsignore: Added a directory. 2006-08-19 11:14 hkmoffa * ext/f2c_libs/sysdep1.h0: Added some comments about a particular problem on old solaris systems. 2006-08-19 11:13 hkmoffa * ext/f2c_libs/err.c: Eliminated an ld warning by setting a local variable as static. 2006-08-19 09:08 hkmoffa * Cantera/src/oneD/Sim1D.cpp: Fixed an optimization compiler warning about a possible uninitialized variable. 2006-08-17 09:24 hkmoffa * configure, configure.in: Added lines to remove a temporary file f90out 2006-08-17 08:46 hkmoffa * configure, configure.in: Took out a Makefile creation rule that was a duplicate. 2006-08-17 08:38 hkmoffa * examples/cxx/.cvsignore: Added a few misc files. 2006-08-15 16:36 hkmoffa * ext/f2c_libs/: f2c.h, f2c.h0: Made these two files compatible, so that there would be no confusion. Changed the logical definition, which wasn't being used, to int from long int. 2006-08-15 15:33 hkmoffa * test_problems/Makefile.in: A couple of directories were left out of the clean and depends rules. 2006-08-15 15:03 hkmoffa * Makefile.in, configure.in: On Sun10, the cantera install is used. It only accepts one file at a time. 2006-08-15 14:59 hkmoffa * Cantera/src/thermo/Makefile.in: This change is needed in order for clean to work in some cases. 2006-08-15 14:38 hkmoffa * test_problems/cathermo/DH_graph_1/Makefile.in: added .depends to the list of dependencies. 2006-08-14 18:12 hkmoffa * Makefile.in, configure.in, preconfig: Fixed some small errors in the install process. 2006-08-14 15:53 hkmoffa * ext/f2c_libs/Makefile.in: Fixed an error in a Makefile. 2006-08-14 15:01 hkmoffa * ext/cvode/Makefile.in: Fixed a make clean rule in ext/cvode 2006-08-14 14:00 hkmoffa * test_problems/cathermo/HMW_test_3/: HMW_test_3.cpp, Makefile.in: Added DEBUG_MODE flag to compilation line. 2006-08-14 13:54 hkmoffa * Cantera/src/thermo/Makefile.in: Added DEGUG_MODE to the defaults. 2006-08-14 13:48 hkmoffa * test_problems/cathermo/HMW_graph_VvT/HMW_graph_VvT.cpp: Fixed a roundoff issue 2006-08-14 13:44 hkmoffa * test_problems/cathermo/HMW_graph_CpvT/HMW_graph_CpvT.cpp: Fixed some initialization issues. 2006-08-14 13:39 hkmoffa * test_problems/cathermo/testIAPWS/output_blessed.txt: New blessed file due to accuracy decrease. 2006-08-14 13:38 hkmoffa * Cantera/src/thermo/WaterPropsIAPWSphi.cpp: Slightly decreased the accuracy of internal check in one case. 2006-08-14 13:32 hkmoffa * test_problems/cathermo/DH_graph_1/: .cvsignore, DH_graph_1.cpp, runtest: Changed the logger instantiation. This apparently made a difference on SUSE. Changed the runtest script to default to the correct location of CANTERA_DATA. 2006-08-14 12:32 hkmoffa * test_problems/cxx_ex/: .cvsignore, runtest: Relaxed the tolerance on the comparison for the kin1 problem. It had failed on SUSE problems 2006-08-14 12:18 hkmoffa * Cantera/src/thermo/: IdealMolalSoln.cpp, WaterPDSS.h: Fixed a compilation error that popped up on SUSE 9.0. 2006-07-25 09:52 hkmoffa * tools/doc/Makefile.in: Fixed the makefile so that it wouldn't eliminate cvs files and it won't produce any warning output. 2006-07-23 10:46 hkmoffa * test_problems/cathermo/testWaterTP/testWaterTP.cpp: Took out warnings. 2006-07-13 13:06 hkmoffa * test_problems/cathermo/: HMW_graph_CpvT/.cvsignore, HMW_graph_CpvT/HMW_NaCl_sp1977_alt.xml, HMW_graph_GvI/HMW_NaCl.xml, HMW_graph_GvT/HMW_NaCl_sp1977_alt.xml, HMW_graph_HvT/.cvsignore, HMW_graph_HvT/HMW_NaCl_sp1977_alt.xml, HMW_graph_VvT/.cvsignore, HMW_graph_VvT/HMW_NaCl_sp1977_alt.xml, HMW_test_1/HMW_NaCl.xml, HMW_test_3/HMW_NaCl_tc.xml: Change in xml data file to support new changes. standardState xml node value for water now matters. 2006-07-13 13:05 hkmoffa * Cantera/src/: xml.h, thermo/DebyeHuckel.cpp, thermo/DebyeHuckel.h, thermo/HMWSoln.cpp, thermo/HMWSoln_input.cpp: Another iteration on trying to unify the water treatment between the 2 objects. 2006-07-12 08:42 hkmoffa * test_problems/cathermo/: Makefile.in, testIAPWSTripP/testTripleP.cpp: Minor changes. 2006-07-12 08:41 hkmoffa * Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h: Unifying the water treatment between objects. Found a bug in getPartialMolarEntropy in HMWSoln that wasn't covered in the test suite. 2006-07-11 17:46 hkmoffa * Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h: Iteration on unifying water treatments in the 2 objects. 2006-07-11 10:13 hkmoffa * test_problems/cathermo/: HMW_test_1/.cvsignore, HMW_test_3/.cvsignore, testIAPWSPres/output_blessed.txt, testIAPWSPres/testPress.cpp, testIAPWSTripP/output_blessed.txt, testIAPWSTripP/testTripleP.cpp, testWaterPDSS/output_blessed.txt, testWaterPDSS/testWaterPDSS.cpp, testWaterTP/output_blessed.txt, testWaterTP/testWaterTP.cpp: Changed some of the tests so that quantities that are nominally zero should be set to zero exactly if they are below a tolerance. In this way, unconsequential roundoff errors don't trigger false results. 2006-07-11 09:30 dggoodwin * Cantera/src/: DAE_solvers.cpp, Crystal.h, IDA_Solver.h, ResidEval.h: initial import 2006-07-11 08:40 dggoodwin * Cantera/src/oneD/Sim1D.cpp: commented out 2 output statements 2006-07-11 08:39 dggoodwin * Cantera/src/stringUtils.cpp: minor cleanup 2006-07-11 08:38 dggoodwin * Cantera/src/misc.cpp: commented out code that will try to find a cti file if the xml file is not found. 2006-07-11 08:35 dggoodwin * Cantera/src/RateCoeffMgr.h: minor cleanup 2006-07-11 08:34 dggoodwin * Cantera/src/PropertyCalculator.h: made destructor virtual 2006-07-11 08:33 dggoodwin * Cantera/src/: MultiPhase.cpp, MultiPhase.h: added some consts, and a routine to read a multiphase mixture from an input file, but this is not yet active 2006-07-11 08:31 dggoodwin * Cantera/src/Makefile.in: added Crystal class, DAE_Solvers 2006-07-11 08:28 dggoodwin * Cantera/src/: DAE_Solver.h, IDA_Solver.cpp: initial import 2006-07-11 08:28 dggoodwin * Cantera/src/CVodesIntegrator.h: updated for latest sundials 2006-07-11 08:25 dggoodwin * Cantera/src/MultiPhaseEquil.cpp: fixed minor bug that caused problems in some cases when an element was excluded. 2006-07-07 11:09 hkmoffa * test_problems/cathermo/: Makefile.in, DH_graph_1/Makefile.in, HMW_graph_CpvT/Makefile.in, HMW_graph_GvT/.cvsignore, HMW_graph_GvT/Makefile.in, HMW_graph_HvT/Makefile.in, HMW_graph_VvT/Makefile.in, HMW_test_1/Makefile.in, HMW_test_3/Makefile.in, ims/Makefile.in, issp/Makefile.in, testIAPWS/Makefile.in, testIAPWSPres/Makefile.in, testIAPWSTripP/Makefile.in, testWaterPDSS/Makefile.in, testWaterTP/Makefile.in: Made the testing process alot less verbose. Hopefully, the bottom line pass/fail result will now be more evident. 2006-07-07 11:07 hkmoffa * config.h.in, configure, configure.in, preconfig: Turned on and documented the DEBUG_MODE capability. It will now create a config.h entry, and a Makefile.in substitution variable, CANTERA_DEBUG_MODE, which can be used in the test suite. 2006-07-07 11:05 hkmoffa * Cantera/src/thermo/: DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h, HMWSoln_input.cpp: Took out an unneeded parameter B_Debye in Pitzer model. Switched to DEBUG_MODE for optional printing. 2006-07-07 09:31 hkmoffa * test_problems/cathermo/HMW_graph_GvT/: HMW_graph_GvT.cpp, output_blessed.txt: Added some text to the output. 2006-07-06 17:34 hkmoffa * test_problems/cathermo/HMW_test_3/Makefile.in: Fixed a makefile error. 2006-07-06 17:33 hkmoffa * test_problems/cathermo/HMW_test_1/Makefile.in: Fixed an error. 2006-07-06 17:28 hkmoffa * configure, configure.in: Added additional test directories. 2006-07-06 17:28 hkmoffa * test_problems/cathermo/: Makefile.in, DH_graph_1/.cvsignore, DH_graph_1/DH_NaCl.xml, DH_graph_1/DH_NaCl_NM.xml, DH_graph_1/DH_NaCl_NM_blessed.csv, DH_graph_1/DH_NaCl_Pitzer.xml, DH_graph_1/DH_NaCl_Pitzer_blessed.csv, DH_graph_1/DH_NaCl_acommon.xml, DH_graph_1/DH_NaCl_acommon_blessed.csv, DH_graph_1/DH_NaCl_bdotak.xml, DH_graph_1/DH_NaCl_bdotak_blessed.csv, DH_graph_1/DH_NaCl_blessed.csv, DH_graph_1/DH_NaCl_dilute.xml, DH_graph_1/DH_NaCl_dilute_blessed.csv, DH_graph_1/DH_graph_1.cpp, DH_graph_1/Makefile.in, DH_graph_1/README, DH_graph_1/runtest: Added the existing test for the DebyeHuckel object. 2006-07-06 17:27 hkmoffa * Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln_input.cpp, Makefile.in: Added the DebyeHuckel object. Note, this object needs a bit of work. It's not connected to the real model of water yet. 2006-07-06 14:54 hkmoffa * test_problems/cathermo/: Makefile.in, HMW_graph_GvI/Makefile.in, HMW_test_1/.cvsignore, HMW_test_1/HMW_NaCl.xml, HMW_test_1/HMW_test_1.cpp, HMW_test_1/Makefile.in, HMW_test_1/README, HMW_test_1/output_blessed.txt, HMW_test_1/runtest, HMW_test_3/.cvsignore, HMW_test_3/HMW_NaCl_tc.xml, HMW_test_3/HMW_test_3.cpp, HMW_test_3/Makefile.in, HMW_test_3/README, HMW_test_3/output_blessed.txt, HMW_test_3/runtest: Added 2 tests with debugging turned on. 2006-07-06 14:13 hkmoffa * test_problems/cathermo/: Makefile.in, HMW_graph_GvI/.cvsignore, HMW_graph_GvI/HMW_NaCl.xml, HMW_graph_GvI/HMW_graph_GvI.cpp, HMW_graph_GvI/Makefile.in, HMW_graph_GvI/NaCl_Solid.xml, HMW_graph_GvI/README, HMW_graph_GvI/T298_blessed.csv, HMW_graph_GvI/T523_blessed.csv, HMW_graph_GvI/TemperatureTable.h, HMW_graph_GvI/runtest, HMW_graph_GvI/sortAlgorithms.cpp, HMW_graph_GvI/sortAlgorithms.h: Added the GvI test. 2006-07-06 14:12 hkmoffa * test_problems/cathermo/HMW_graph_VvT/: .cvsignore, HMW_NaCl_sp1977_alt.xml, HMW_graph_VvT.cpp, Makefile.in, NaCl_Solid.xml, README, TemperatureTable.h, V_standalone.cpp, output_blessed.txt, runtest, sortAlgorithms.cpp, sortAlgorithms.h: Added the excess volume test. 2006-07-06 14:00 hkmoffa * test_problems/cathermo/HMW_graph_CpvT/: .cvsignore, Cp_standalone.cpp, HMW_NaCl_sp1977_alt.xml, HMW_graph_CpvT.cpp, Makefile.in, NaCl_Solid.xml, README, TemperatureTable.h, output_blessed.txt, runtest, sortAlgorithms.cpp, sortAlgorithms.h: Added the Cp HMWSoln test. 2006-07-06 13:13 hkmoffa * test_problems/cathermo/HMW_graph_HvT/: .cvsignore, HMW_NaCl_sp1977_alt.xml, HMW_graph_HvT.cpp, L_standalone.cpp, Makefile.in, NaCl_Solid.xml, README, TemperatureTable.h, output_blessed.txt, runtest, sortAlgorithms.cpp, sortAlgorithms.h: Added another test. 2006-07-06 08:56 hkmoffa * test_problems/cathermo/Makefile.in: Added directory. 2006-07-06 08:56 hkmoffa * test_problems/cathermo/HMW_graph_GvT/: .cvsignore, Gex_standalone.cpp, HMW_NaCl_sp1977_alt.xml, HMW_graph_GvT.cpp, Makefile.in, NaCl_Solid.xml, README, TemperatureTable.h, output_blessed.txt, runtest, sortAlgorithms.cpp, sortAlgorithms.h: Added unit test for HMWSoln. 2006-07-06 08:41 hkmoffa * Cantera/src/thermo/electrolytes.h: Added general .h define file 2006-07-06 08:40 hkmoffa * Cantera/src/: importCTML.cpp, importCTML.h: Added a utility routine. 2006-07-06 08:39 hkmoffa * Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h, HMWSoln_input.cpp, IdealMolalSoln.cpp, IdealMolalSoln.h, Makefile.in, MolalityVPSSTP.h: Added Pitzer Object 2006-07-05 14:25 hkmoffa * configure, configure.in: Added another test directory makefile. 2006-07-05 14:23 hkmoffa * test_problems/min_python/: Makefile.in, negATest/.cvsignore, negATest/Makefile.in, negATest/negATest.cpp, negATest/negATest_blessed.out, negATest/noxNeg.cti, negATest/noxNeg_blessed.xml, negATest/runtest: Added another test to add coverage to the ctml to xml treatment of neg A coefficients. 2006-07-05 07:35 hkmoffa * configure, configure.in: Added a couple of test directory Makefiles that were ommitted. 2006-07-03 18:11 hkmoffa * test_problems/cathermo/: Makefile.in, testWaterTP/.cvsignore, testWaterTP/Makefile.in, testWaterTP/README, testWaterTP/output_blessed.txt, testWaterTP/runtest, testWaterTP/testWaterTP.cpp, testWaterTP/waterTPphase.xml: Added a test for WaterTP 2006-07-03 18:04 hkmoffa * configure, configure.in: Added another test directory. 2006-07-03 18:04 hkmoffa * test_problems/cathermo/: Makefile.in, testWaterPDSS/.cvsignore, testWaterPDSS/Makefile.in, testWaterPDSS/output_blessed.txt, testWaterPDSS/runtest, testWaterPDSS/testWaterPDSS.cpp: Added a test for WaterPDSS object. 2006-07-03 17:41 hkmoffa * configure, configure.in: Added a couple more tests for electrochemistry. 2006-07-03 17:40 hkmoffa * test_problems/cathermo/Makefile.in: Added another test. 2006-07-03 17:39 hkmoffa * test_problems/cathermo/testIAPWSTripP/: .cvsignore, Makefile.in, README, output_blessed.txt, runtest, testTripleP.cpp: Triple point calcultion test routine. 2006-07-03 17:32 hkmoffa * test_problems/cathermo/testIAPWSPres/: .cvsignore, Makefile.in, README, output_blessed.txt, runtest, testPress.cpp: Second test. 2006-07-03 17:21 hkmoffa * test_problems/cathermo/: Makefile.in, testIAPWS/.cvsignore, testIAPWS/Makefile.in, testIAPWS/README, testIAPWS/output_blessed.txt, testIAPWS/runtest, testIAPWS/testIAPWSphi.cpp: Added the first test for IAPWS 2006-07-03 17:01 hkmoffa * Cantera/src/thermo/: IdealMolalSoln.cpp, Makefile.in, PDSS.cpp, PDSS.h, WaterPDSS.cpp, WaterPDSS.h, WaterProps.cpp, WaterProps.h, WaterPropsIAPWS.cpp, WaterPropsIAPWS.h, WaterPropsIAPWSphi.cpp, WaterPropsIAPWSphi.h, WaterTP.cpp, WaterTP.h: First commit of water properties routines. These are under-the-hood routines for calculation of water electrolyte thermochemistry. 2006-07-03 12:59 hkmoffa * test_problems/Makefile.in: Added a new test directory. 2006-07-03 12:58 hkmoffa * test_problems/negATest/: .cvsignore, Makefile.in, negATest.cpp, negATest_blessed.out, noxNeg.cti, noxNeg.xml, runtest: Added a new test that captures negative A factors. 2006-07-03 12:57 hkmoffa * configure, configure.in: Added a new test. 2006-07-03 12:57 hkmoffa * Cantera/src/: RateCoeffMgr.h, RxnRates.h: Fix for negative pre-exponential factors producing NaN rates of progress. This bug was reported in the Cantera newsgroup. The fix consists of replacing Rc = exp ( mlogA + blogT - Ea / RT) with Rc = A * exp (b logT - Ea/RT) Therefore, the log of A never has to be taken. Note, this also allows for a zero rate of progress for a reaction. Consequences: The permissible range of the rate constant values may be altered. Numerical roundoff differences will occur, since the order of operations in key rate constant evalulations has been changed. Speed of the calculation may be affected. I have no idea which way. The fix should be considered as provisional. There are different pathways for fixing this. This is merely the simplest. 2006-07-03 12:41 hkmoffa * Cantera/src/importCTML.cpp: Added a couple of comments. 2006-06-23 16:23 hkmoffa * Makefile.in: python=minimal fixes on cygwin 2006-06-23 14:04 hkmoffa * examples/cxx/: .cvsignore, gri30.xml, kinetics_example1.cpp: Added gri30.xml, so this example will work under the none python option. 2006-06-23 14:01 hkmoffa * test_problems/cathermo/Makefile.in: Fixed an error in the clean rule. 2006-06-23 13:35 hkmoffa * Cantera/src/: Phase.h, ThermoPhase.h: Doxygen fixes. 2006-06-23 13:33 hkmoffa * tools/doc/: .cvsignore, Cantera.cfg.in, doxyinput/cxx-setup.txt, doxyinput/equildemo.txt, doxyinput/thermodemo.txt, doxyinput/winbuild.txt, html/.cvsignore: Additions to doxygen documentation. Fixes to doxygen docs -> eliminated all of the warnings and ommitted pages. 2006-06-23 13:31 hkmoffa * Cantera/src/thermo/: IdealMolalSoln.cpp, IdealMolalSoln.h, IdealSolidSolnPhase.cpp, IdealSolidSolnPhase.h, MolalityVPSSTP.h: Doxygen formatting changes. 2006-06-23 07:31 dggoodwin * Cantera/cxx/demos/combustor.cpp: added C++ combustor example 2006-06-23 07:28 dggoodwin * Cantera/python/examples/reactors/combustor.py: added combustor example 2006-06-22 08:10 hkmoffa * test_problems/fracCoeff/: .cvsignore, frac.xml: Added frac.xml, since this is now a required file. 2006-06-22 06:47 hkmoffa * configure, configure.in: Fixed an error in figuring out what time stamp program, tscompare, works on the current system. 2006-06-22 06:43 hkmoffa * test_problems/diamondSurf/: .cvsignore, diamond.xml: Added the diamond.xml file. It's now a prerequisite towards running the problem. 2006-06-20 17:00 hkmoffa * examples/cxx/equil_example1.cpp: Replaced silane.cti with silane.xml so that it will work for python none installation. 2006-06-20 16:52 hkmoffa * test_problems/cxx_ex/runtest: Commented out CANTERA_DATA statement. On the x86-linux1 cf machine, this was causing the test to crash for some reason. 2006-06-20 16:16 hkmoffa * test_problems/cathermo/ims/output_blessed.txt: Took out spurious output from the blessed file. 2006-06-20 16:15 hkmoffa * Cantera/src/thermo/IdealMolalSoln.cpp: Took out a spurious print statement. 2006-06-20 16:11 hkmoffa * test_problems/fracCoeff/: fracCoeff.cpp, runtest: Made this test work for python=none. 2006-06-20 16:04 hkmoffa * configure.in: Added a few directories: min_python 2006-06-20 16:03 hkmoffa * test_problems/: Makefile.in, min_python/.cvsignore, min_python/Makefile.in, min_python/minDiamond/.cvsignore, min_python/minDiamond/Makefile.in, min_python/minDiamond/diamond.cti, min_python/minDiamond/diamond_blessed.xml, min_python/minDiamond/runDiamond.cpp, min_python/minDiamond/runDiamond_blessed.out, min_python/minDiamond/run_diamond.py, min_python/minDiamond/runtest, min_python/minDiamond/tdia_a.py: First cut at getting rid of the false bad test results for the python = none option. min_python dir will include the minimal python installation tests 2006-06-20 15:48 hkmoffa * test_problems/diamondSurf/: diamond.cti, runDiamond.cpp, runtest: changed the input file to diamond.xml, so that python="none" installations will pass this test. 2006-06-20 15:36 hkmoffa * test_problems/surfkin/surfdemo.cpp: Changed surfdemo.cpp to read gri30.xml. Thus, this test will pass if python option is set to none. 2006-06-20 14:58 hkmoffa * configure.in, preconfig: Changed NUMARRAY_HOME so that it doesn't have a default in preconfig. NUMARRAY_INC_DIR is now constructed from NUMARRAY_HOME in the following prioritized way depending upon the existance of directories: NUMARRAY_INC_DIR=$NUMARRAY_HOME/include/python2.4 NUMARRAY_INC_DIR=$NUMARRAY_HOME/include/python2.3 NUMARRAY_INC_DIR=$NUMARRAY_HOME/include/python Additionally, NUMARRAY_INC_DIR can now be input directly. NUMARRAY_HOME is only used to set NUMARRAY_INC_DIR. Note, the new method now conforms to what the numarray installer actually does. 2006-06-20 06:56 hkmoffa * tools/testtools/csvdiff.cpp: Fixed compilation of this on a linux platform in the compile farm. Didn't like declarations in a switch statement. 2006-06-19 16:25 hkmoffa * tools/doc/: .cvsignore, Cantera.cfg, Cantera.cfg.in, Makefile.in, README, html/.cvsignore: Makde Cantera.cfg a configurable file. Previously there were several hard coded paths in the file. 2006-06-19 16:21 hkmoffa * configure.in, preconfig: Added the GRAPHVIZDIR variable to the configure script. This is used to locate the dot executable, when using doxygen. 2006-06-19 16:19 hkmoffa * test_problems/cathermo/Makefile.in: Added a new test, ims. 2006-06-19 16:19 hkmoffa * test_problems/cathermo/ims/: .cvsignore, IMSTester.cpp, Makefile.in, WaterPlusSolutes.xml, output_blessed.txt, runtest: Added a new test. 2006-06-19 16:15 hkmoffa * Cantera/src/: global.h, misc.cpp: Reduced the number of doxygen error messages. 2006-06-19 16:14 hkmoffa * Cantera/src/thermo/: IdealMolalSoln.cpp, IdealMolalSoln.h, Makefile.in, MolalityVPSSTP.cpp, MolalityVPSSTP.h: Added an IdealMolalSoln object. 2006-06-19 07:35 hkmoffa * Cantera/cxx/demos/: .cvsignore, Makefile.in: Added a .depends rule 2006-06-13 10:06 hkmoffa * Cantera/src/xml.cpp: changed the write_int() routine to produce prettier output. 2006-06-13 10:04 hkmoffa * Cantera/src/: ctml.h, ctml.cpp: Added comments to addFloatArray() Corrected comments for procedure getInteger() getFloatArray(): Added XML name checking. The default name is still "getFloatArray". However, now other XML names are acceptable. Changed atof() calls to atofCheck() Changed the code so that a comma can be the last non-spaced character in the value field. 2006-06-13 09:11 hkmoffa * config.h.in, configure.in, preconfig: Added support for conditional use of ideal solid solutions. 2006-06-13 09:09 hkmoffa * test_problems/cathermo/issp/: .cvsignore, ISSPTester.cpp, IdealSolidSolnPhaseExample.xml, Makefile.in, output_blessed.txt, runtest: Added a test problem for ideal solid solutions. 2006-06-13 09:07 hkmoffa * test_problems/cathermo/: .cvsignore, Makefile.in: Added makefiles. 2006-06-13 09:06 hkmoffa * test_problems/Makefile.in: Added a cathermo test directory. 2006-06-13 09:05 hkmoffa * Cantera/src/Makefile.in: Added support for conditional compilation of thermo directory. 2006-06-13 09:04 hkmoffa * Cantera/src/importCTML.cpp: Changed importPhase to call initThermoXML, not initThermo at the end of its execution. 2006-06-13 09:03 hkmoffa * Cantera/src/State.h: Changed a few functions to be virtual, in order to support incompressible equations of state. 2006-06-13 09:02 hkmoffa * Cantera/src/thermo/: IdealSolidSolnPhase.cpp, IdealSolidSolnPhase.h, Makefile.in, MolalityVPSSTP.cpp, MolalityVPSSTP.h, VPStandardStateTP.cpp, VPStandardStateTP.h: Added an IdealSolidSolnPhase capability. Changed existing thermo files to use initThermoXML(). 2006-06-13 08:26 hkmoffa * tools/testtools/csvdiff.cpp: Added an atol and rtol command-line capability. It also does more for comparisons with unequal rows. 2006-06-12 17:57 hkmoffa * Cantera/src/InterfaceKinetics.h: Fixed a typo 2006-06-12 17:24 hkmoffa * Cantera/src/LatticeSolidPhase.h: Fixed an error mentioned in the Cantera newsgroup. 2006-06-12 17:20 hkmoffa * Cantera/src/ThermoPhase.h: Added the function getPartialMolarCp(). It isn't currently in the API, but it should be. 2006-06-12 17:19 hkmoffa * Cantera/src/Elements.cpp: Fixed a minor case which resulted in a core dump. 2006-06-11 04:36 dggoodwin * Cantera/python/examples/flames/fixed_T_flame.py: minor changes 2006-06-10 10:15 dggoodwin * Cantera/python/examples/flames/: tdata.csv, tdata.dat: changed tdata.csv to tdata.dat 2006-06-10 10:07 dggoodwin * Cantera/python/examples/flames/: fixed_T_flame.py, tdata.csv: added fixed T flame example 2006-06-08 07:05 hkmoffa * Cantera/src/StoichSubstance.h: Fixed a typo and added getStandardVolumes() routine. 2006-05-31 11:06 dggoodwin * configure, configure.in, Cantera/python/ctml_writer.py: added LatticePhase to configure.in 2006-05-27 16:34 hkmoffa * Cantera/src/SpeciesThermoFactory.cpp: used popError() on two cases where errors are caught and delt with. 2006-05-18 16:18 dggoodwin * win32/vc7/zeroD/zeroD.vcproj: added ConstPressureReactor to win32 project 2006-05-17 10:43 dggoodwin * configure.in, preconfig, ext/f2c_libs/Makefile.in, ext/f2c_libs/arith.h: misc 2006-05-17 08:59 dggoodwin * examples/cxx/kinetics_example3.cpp: initial import 2006-05-17 08:16 dggoodwin * Cantera/src/zeroD/: ReactorFactory.cpp, ReactorFactory.h: initial import 2006-05-07 14:17 dggoodwin * Cantera/clib/src/ctreactor.cpp: added support for const pressure and flow reactors 2006-05-06 08:34 dggoodwin * Cantera/: clib/src/ctreactor.cpp, cxx/include/zerodim.h, python/Cantera/Reactor.py, src/CVodesIntegrator.cpp, src/CVodesIntegrator.h, src/FuncEval.h, src/Makefile.in, src/Mu0Poly.h, src/NasaPoly1.h, src/ShomatePoly.h, src/StoichManager.h, src/importCTML.h, src/transport/MixTransport.cpp: support for constant-pressure reactors 2006-05-06 08:32 dggoodwin * Cantera/python/examples/reactors/piston.py: initial import 2006-05-06 07:56 dggoodwin * Cantera/src/zeroD/: ConstPressureReactor.cpp, ConstPressureReactor.h, FlowReactor.cpp, Reactor.cpp, Reactor.h, ReactorBase.cpp, ReactorBase.h: added constant pressure reactor 2006-05-03 19:13 dggoodwin * configure, test_problems/Makefile.in, tools/src/finish_install.py.in: support for Python-free environments 2006-05-03 13:49 dggoodwin * Cantera/src/ct2ctml.cpp: Windows has no sleep command 2006-05-03 12:45 dggoodwin * Cantera/: clib/src/ct.cpp, clib/src/ct.h, python/src/ctthermo_methods.cpp, python/ctml_writer.py, python/Cantera/Interface.py, python/Cantera/ThermoPhase.py, src/GeneralSpeciesThermo.cpp, src/GeneralSpeciesThermo.h, src/Mu0Poly.cpp, src/NasaThermo.h, src/SpeciesThermo.h, src/SpeciesThermoFactory.cpp, src/SpeciesThermoFactory.h, src/SpeciesThermoInterpType.h, src/State.cpp, src/State.h, src/thermo/MolalityVPSSTP.cpp, src/thermo/VPStandardStateTP.cpp, src/transport/TransportBase.h: added electric potential 2006-05-03 11:12 hkmoffa * examples/cxx/equil_example1.cpp: Changed the initial condition slightly. This was to avoid a problem with convergence that occurred in the chemical equilibrium solver. 2006-05-03 11:07 hkmoffa * test_problems/cxx_ex/: eq1_blessed.csv, eq1_blessed.dat: Rebaselined the blessed state, due to a small change in initial conditions. 2006-05-03 02:51 dggoodwin * configure.in: moved uname -i statement 2006-05-01 16:04 dggoodwin * Cantera/matlab/cantera/: @ThermoPhase/setElectricPotential.m, @ThermoPhase/electricPotential.m, importEdge.m: initial import 2006-05-01 16:03 dggoodwin * Cantera/matlab/cantera/private/thermomethods.cpp: added functions to set and get the electric potential of a phase 2006-05-01 15:36 hkmoffa * configure.in: Added the ext/recipes/Makefile file to the list of makefiles. Somehow, it wasn't in the list. 2006-05-01 08:51 hkmoffa * Makefile.in: Tracked down a bug in the make system to cxxlib. Need to make all at the Cantera/cxx level in order to copy include files over to the build/include directory tree. 2006-04-30 16:43 hkmoffa * .cvsignore: Added some config log files to this file. 2006-04-30 16:29 hkmoffa * bin/: tscompare, tscompare_alwaystrue, tscompare_csh, tscompare_ksh, tscompare_sh: Added tscompare files. 2006-04-30 16:14 hkmoffa * examples/cxx/Makefile.in: Solaris port: added SunWS_cache to clean rule 2006-04-30 16:13 hkmoffa * tools/testtools/Makefile.in: Took out extraneous statements. 2006-04-30 16:13 hkmoffa * tools/src/Makefile.in: Solaris port commits. 2006-04-30 16:11 hkmoffa * ext/f2c_libs/Makefile.in: Solaris changes. 2006-04-30 16:10 hkmoffa * Cantera/python/: Makefile.in, ctml_writer.py, setup.py.in: Solaris port changes. 2006-04-30 16:09 hkmoffa * bin/install_tsc.in: changed INSTALL to INSTALL_abs 2006-04-30 16:08 hkmoffa * .cvsignore: Added files. 2006-04-30 16:07 hkmoffa * configure, Cantera.README, Makefile.in, config.h.in, configure.in, preconfig: Solaris Port: the config/configure.in file has been pushed up one directory. The previous configure file is now called preconfig. 2006-04-30 16:03 hkmoffa * config/install-sh: Solaris port: Changing directory structure to put configure.in in top directory. 2006-04-30 15:33 hkmoffa * ext/Makefile.in: Added recipes to clean directories. 2006-04-30 15:32 hkmoffa * ext/f2c_lapack/Makefile.in: Took out duplicates. 2006-04-30 15:23 hkmoffa * Cantera/: cxx/demos/.cvsignore, fortran/src/.cvsignore: Added SunWS_cache 2006-04-30 15:22 hkmoffa * Cantera/clib/src/.cvsignore: Added SuNWS_cache 2006-04-30 15:20 hkmoffa * Cantera/cxx/Makefile.in: Fixed an error in INCDIR definition. 2006-04-30 15:17 hkmoffa * Cantera/cxx/include/: IdealGasMix.h, PureFluid.h: Made ready() a const function, 2006-04-30 15:15 hkmoffa * Cantera/fortran/src/Makefile.in: Solaris: SunWS_cache handling 2006-04-30 15:13 hkmoffa * Cantera/cxx/demos/Makefile.in: Solaris changes 2006-04-30 15:10 hkmoffa * Cantera/cxx/src/: .cvsignore, Makefile.in: Solaris changes SunWS_cache handling 2006-04-30 15:08 hkmoffa * Cantera/src/ct_defs.h: Changed math.h to cmath 2006-04-30 15:08 hkmoffa * Cantera/: src/.cvsignore, clib/src/Makefile.in: Added SunWS_cache 2006-04-30 15:07 hkmoffa * Cantera/src/CVode.cpp: Added Id line 2006-04-30 15:05 hkmoffa * Cantera/src/ct2ctml.cpp: More sleep commands needed for system calls for solaris 2006-04-30 15:03 hkmoffa * Cantera/src/stringUtils.cpp: don't need ctypes.h 2006-04-30 15:00 hkmoffa * Cantera/src/converters/: Makefile.in, ck2ct.cpp, ck2ct.h: Solaris changes: use cstdlib not stdlib.h 2006-04-30 14:43 hkmoffa * test_problems/: surfkin/.cvsignore, surfkin/Interface.h, surfkin/Makefile.in, silane_equil/.cvsignore, silane_equil/IdealGasMix.h: Solaris changes. 2006-04-30 14:37 hkmoffa * test_problems/diamondSurf/run_diamond.py: Fixed typo. 2006-04-30 14:36 hkmoffa * test_problems/diamondSurf/: .cvsignore, Makefile.in: Additions for solaris. 2006-04-30 14:20 hkmoffa * Cantera/src/Makefile.in: Added the logger.h file. 2006-04-30 13:21 hkmoffa * ext/Makefile.in: Uses the build_f2c_lib variable. 2006-04-30 12:58 hkmoffa * Cantera/cxx/include/Cantera.h: Added logger.h to this file. 2006-04-30 12:57 hkmoffa * Cantera/cxx/include/GRI30.h: Changed the #ifndef line so that it is unique. 2006-04-30 12:56 hkmoffa * Cantera/cxx/include/kinetics.h: Added a couple more include kinetics files. 2006-04-30 12:54 hkmoffa * Cantera/cxx/include/thermo.h: Changed a comments section. 2006-04-30 12:54 hkmoffa * Cantera/cxx/include/PureFluid.h: Added Id field. 2006-04-30 11:08 hkmoffa * .cvsignore: Added the file set_cant_env 2006-04-30 11:06 hkmoffa * test_problems/: Makefile.in, cxx_ex/Makefile.in, fracCoeff/.cvsignore, fracCoeff/Makefile.in, fracCoeff/frac.cti, fracCoeff/fracCoeff.cpp, fracCoeff/frac_blessed.out, fracCoeff/frac_blessed.xml, fracCoeff/runtest: Added a new test that pretty much mimics the frac python test. It does add tests for the calculation of equilibrium constants for fractional coefficient reactions. 2006-04-30 11:01 hkmoffa * Cantera/src/: EdgeKinetics.cpp, GasKinetics.cpp, GasKinetics.h, InterfaceKinetics.cpp, Kinetics.h, Phase.cpp: Fixed an error in the GasKinetics object that occurred for calculating equilibrium constants for reactions with fractional stoichiometric coefficients. The member data m_dn[] was being calculated incorrectly for theses cases and then used in the calculation of the equilibrium constant. m_dn[] now correctly evaluates the difference in rxn order between the reactants and products for fraction coefficient reactions. 2006-04-29 17:14 dggoodwin * Makefile.in, configure, config/configure.in: added capability to build without Python. Features requiring Python in the build process (Python and MATLAB interfaces) are skipped, and Python tests are skipped also. 2006-04-29 03:45 dggoodwin * Cantera/src/thermo/: MolalityVPSSTP.cpp, MolalityVPSSTP.h, SingleSpeciesTP.cpp, VPStandardStateTP.cpp, VPStandardStateTP.h: changed from using ctvector to using std::vector. Required replacing v.begin() in many places by &v[0]. Macro DATA_PTR(v) defined for readability. 2006-04-28 10:22 dggoodwin * Cantera/cxx/demos/flamespeed.cpp, Cantera/cxx/src/cxxutils.cpp, Cantera/src/Array.h, Cantera/src/BandMatrix.cpp, Cantera/src/CVodesIntegrator.cpp, Cantera/src/ChemEquil.cpp, Cantera/src/ConstDensityThermo.cpp, Cantera/src/DenseMatrix.cpp, Cantera/src/EdgeKinetics.cpp, Cantera/src/EdgeKinetics.h, Cantera/src/GRI_30_Kinetics.cpp, Cantera/src/GRI_30_Kinetics.h, Cantera/src/GasKinetics.cpp, Cantera/src/GasKinetics.h, Cantera/src/Group.h, Cantera/src/IdealGasPhase.cpp, Cantera/src/IdealGasPhase.h, Cantera/src/ImplicitSurfChem.cpp, Cantera/src/InterfaceKinetics.cpp, Cantera/src/InterfaceKinetics.h, Cantera/src/LatticeSolidPhase.cpp, Cantera/src/Makefile.in, Cantera/src/Mu0Poly.cpp, Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhaseEquil.cpp, Cantera/src/NasaPoly2.h, Cantera/src/NasaThermo.h, Cantera/src/Phase.cpp, Cantera/src/ReactionPath.cpp, Cantera/src/ShomatePoly.h, Cantera/src/ShomateThermo.h, Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/State.cpp, Cantera/src/State.h, Cantera/src/StoichSubstance.cpp, Cantera/src/SurfPhase.cpp, Cantera/src/ct_defs.h, Cantera/src/funcs.cpp, Cantera/src/importCTML.cpp, Cantera/src/phasereport.cpp, Cantera/src/utilities.h, Cantera/src/converters/Makefile.in, Cantera/src/converters/ckr_defs.h, Cantera/src/oneD/Domain1D.h, Cantera/src/oneD/MultiJac.cpp, Cantera/src/oneD/MultiNewton.cpp, Cantera/src/oneD/OneDim.cpp, Cantera/src/oneD/Sim1D.cpp, Cantera/src/oneD/Sim1D.h, Cantera/src/oneD/StFlow.cpp, Cantera/src/oneD/boundaries1D.cpp, Cantera/src/transport/DustyGasTransport.cpp, Cantera/src/transport/MMCollisionInt.cpp, Cantera/src/transport/Makefile.in, Cantera/src/transport/MixTransport.cpp, Cantera/src/transport/MultiTransport.cpp, Cantera/src/transport/TransportFactory.cpp, Cantera/src/zeroD/FlowReactor.cpp, Cantera/src/zeroD/Reactor.cpp, Cantera/src/zeroD/ReactorBase.h, Cantera/src/zeroD/ReactorNet.cpp, Cantera/src/zeroD/Wall.cpp, test_problems/surfkin/surfdemo.cpp, Cantera/src/CVode.cpp: changed from using ctvector to using std::vector. Required replacing v.begin() in many places by &v[0]. Macro DATA_PTR(v) defined for readability. 2006-04-27 15:47 hkmoffa * Cantera/src/CVode.cpp: Took out 2 print statements, that was causing the diamond test to fail. 2006-04-27 14:39 hkmoffa * configure: Changed the environmental variable, WITH_ELECTROLYTES, so that it can be set from a preconfig routine. 2006-04-25 02:52 dggoodwin * Cantera/src/Array.h: changed doublereal* to iterator in axpy 2006-04-23 00:27 dggoodwin * Cantera/python/Cantera/Edge.py: initial import 2006-04-23 00:24 dggoodwin * Cantera/src/oneD/Makefile.in: added missing Domain1D.cpp 2006-04-22 23:41 dggoodwin * config/: configure, configure.in: cleaned up configure.in 2006-04-19 13:46 hkmoffa * Cantera/python/Makefile.in: Added quotes around some variables. This is necessary if the variables have spaces in them in order for the values to be propagated correctly to the Makefile variables. 2006-04-19 13:44 hkmoffa * ext/f2c_libs/Makefile.in: Added a ldemulation arg to the strip command. This is necessary when compiling 32 bit on a 64 bit linux box. 2006-03-07 12:59 hkmoffa * Cantera/src/transport/: .cvsignore, MMCollisionInt.h, Makefile.in: Changed the name of some arguments that conflicted with names of member data. This created a warning message on Solaris. 2006-03-07 12:52 hkmoffa * Cantera/src/oneD/: .cvsignore, Domain1D.h, Inlet1D.h, Makefile.in, Resid1D.h, Sim1D.cpp, Sim1D.h, StFlow.h: Solaris sunpro compilers gave a warning about virtual functions in the same class which have the same name, but which have different arguments. Solaris complains when virtual functions are hidden, when they are overloaded. 2006-03-07 12:49 hkmoffa * Cantera/src/oneD/boundaries1D.cpp: const needed for proper virtual inheritance 2006-03-07 12:47 hkmoffa * Cantera/src/oneD/refine.cpp: Solaris warns about templated static functions. 2006-03-05 16:07 hkmoffa * test_problems/python/runtest: Quotation marks are needed on Solaris 2006-03-05 15:55 hkmoffa * Cantera/cxx/include/GRI30.h: Changed the defn of a function to agree with underlying virtual function. 2006-03-05 15:52 hkmoffa * test_problems/silane_equil/Makefile.in: Added deletion of sun cache directory 2006-03-03 15:21 hkmoffa * ext/tpx/: CarbonDioxide.cpp, CarbonDioxide.h, HFC134a.cpp, HFC134a.h, Heptane.cpp, Heptane.h, Hydrogen.cpp, Hydrogen.h, Methane.cpp, Methane.h, Nitrogen.cpp, Nitrogen.h, Oxygen.cpp, Oxygen.h, RedlichKwong.h, Sub.h, Water.cpp, Water.h, lk.cpp, lk.h: solaris warned about string literals being assigned to char *. So, I changed it so that the species name is storred within the object. 2006-03-03 14:44 hkmoffa * ext/: lapack/Makefile.in, recipes/Makefile.in: Took duplicate out of F77FLAGS statement. 2006-03-03 14:43 hkmoffa * ext/Makefile.in: Fixed f2c so that it's only compiled when the option is turned on. 2006-03-03 14:04 hkmoffa * Cantera/src/converters/.cvsignore: Added a file 2006-03-03 14:02 hkmoffa * Cantera/src/ReactionPath.h: An argument hid a member function name. I Changed the argument variable name. 2006-03-03 14:00 hkmoffa * Cantera/src/: zeroD/.cvsignore, zeroD/Makefile.in, thermo/.cvsignore, thermo/Makefile.in: Added SunWS_cache deletion 2006-03-03 13:57 hkmoffa * Cantera/src/ReactionPath.cpp: An argument conflicted with a member variable. I changed the name of the argument variable. 2006-03-03 13:11 hkmoffa * Cantera/src/: PureFluidPhase.cpp, PureFluidPhase.h: Changed the defn of two functions who were missing const declarations. These were const in Thermophase.h, and for proper inheritance, they need to be the same in derived classes. 2006-03-03 12:39 hkmoffa * ext/blas/Makefile.in: Took out duplicate flags 2006-03-03 12:31 hkmoffa * ext/math/: Makefile.in, dgbfa.f: Added the file dgbfa.f Took out duplicate FFLAGS statement. 2006-03-03 10:17 hkmoffa * tools/src/.cvsignore: Added the SunWS_cache directory. 2006-03-03 10:03 hkmoffa * config/: configure, configure.in: This is the start of trying to handle 32 bit vs. 64 bit compilation on select platforms. For example, on linux you can compile 32 bit and 64 bit if the os and hardware can handle 64 bits. In many cases you want to stick to 32 bit compilations. One reason is that python may only be set up for 32 bit add-on modules. e.g see the SIZEOF_VOID_P defn in pyconfig.h So, I added BITCOMPILE BITHARDWARE, and BITCHANGE variables I also added the variable ldemulationarg, because it's needed in one case for 32 bit compilations on 64 bit linux boxes. Later I will add the default compiler flags that make this 32 bit compilation work. Now they are brought in through a prep script. 2006-03-03 08:44 hkmoffa * ext/math/: Makefile.in, dgbefa.f, dgbfa.f: Replaced the file dgbefa.f with dgbfa.f. The later is used in other math routines. 2006-03-03 08:42 hkmoffa * config/configure.in: EXTRA_LINK can now come in with a default value. Am using this for the 32 bit compile on a 64 bit linux operating system. 2006-03-03 08:37 hkmoffa * test_problems/python/: .cvsignore, README, flame1_blessed.csv, flame1_blessed_linux.csv, frac.py, runtest: Rebaselined the problem. The number of points changed from 104 to 105 points. However, the solution stayed just about the same. 2006-03-03 07:33 hkmoffa * test_problems/ck2cti_test/: .cvsignore, runtest.in: Added files to the ignore list. 2006-03-03 07:29 hkmoffa * test_problems/diamondSurf/: Makefile.in, runDiamond.cpp: Fixed this test so that it can work in the srcdirtree environment. 2006-03-03 07:27 hkmoffa * test_problems/cxx_ex/: Makefile.in, gri30.xml, kin1_blessed.csv, silane.xml: Rebaselined the kin1 problem after taking a close look at the results. At one time plane, a couple of the radicals concentrations changed at the ~5.0E-3 level. This seems to be a nontrivial change, however, I this we should let it pass. I sense this problem could be made more stable if the nonlinear convergence requirements were made a lot stricter, while maintaining the same time step truncation error tolerances. 2006-03-03 07:21 hkmoffa * test_problems/silane_equil/: IdealGasMix.h, Makefile.in, output_blessed.txt, silane.xml, silane_equil.cpp: updated the test to ensure that it works from the srcdirtree. 2006-03-03 06:43 hkmoffa * test_problems/surfkin/: Interface.h, Makefile.in, surfdemo.cpp: Fixed the program so that it can be run from srcdirtree and install tree 2006-02-24 15:24 hkmoffa * Cantera/clib/src/ctonedim.cpp: Fixed a warning message about getting to the end of a int function without a return. 2006-02-24 15:22 hkmoffa * Cantera/clib/src/ct.cpp: Fixed a warning message about no return from a double function. 2005-12-18 22:10 dggoodwin * Cantera/python/ctml_writer.py: added size attribute to species class 2005-12-15 09:07 dggoodwin * Cantera/src/GasKinetics.cpp: added statements to getEquilibriumConstants to force a T update on the next call. Array m_rkcn was being left containing incorrect data. Problem is now fixed. 2005-12-09 09:49 dggoodwin * configure, Cantera/clib/src/ct.cpp, Cantera/clib/src/ct.h, Cantera/python/Cantera/ThermoPhase.py, Cantera/python/Cantera/liquidvapor.py, Cantera/src/PureFluidPhase.cpp, Cantera/src/PureFluidPhase.h, Cantera/src/ThermoPhase.h, Cantera/src/phasereport.cpp, Cantera/src/converters/CKParser.cpp: removed critical and saturation properties from ThermoPhase 2005-12-06 19:34 dggoodwin * Cantera/python/examples/reactors/sensitivity1.py: initial import 2005-12-06 11:23 dggoodwin * config/: configure, configure.in: fixed sundials test 2005-12-05 10:36 dggoodwin * Cantera/: matlab/cantera/examples/catcomb.m, python/Cantera/OneD/onedim.py, src/oneD/Domain1D.h, src/oneD/MultiNewton.cpp: minor changes 2005-11-26 08:08 dggoodwin * configure, Cantera/clib/src/ctreactor.cpp, Cantera/python/Cantera/Reactor.py, Cantera/src/CVodesIntegrator.cpp, Cantera/src/zeroD/FlowReactor.h, Cantera/src/zeroD/ReactorBase.h, Cantera/src/zeroD/ReactorNet.cpp, Cantera/src/zeroD/ReactorNet.h, config/configure, config/configure.in, tools/templates/f77/demo.mak.in, tools/templates/f90/demo.mak.in: misc minor fixes 2005-11-22 17:19 dggoodwin * Cantera/python/Cantera/ThermoPhase.py: fixed error in restoreState 2005-11-22 09:59 dggoodwin * Cantera/cxx/demos/kinetics1.cpp, Cantera/src/FalloffFactory.cpp, Cantera/src/FalloffFactory.h, Cantera/src/GasKinetics.cpp, Cantera/src/Integrator.h, Cantera/src/KineticsFactory.cpp, Cantera/src/KineticsFactory.h, Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/SpeciesThermoFactory.h, Cantera/src/SpeciesThermoMgr.h, Cantera/src/State.cpp, Cantera/src/StoichManager.h, Cantera/src/ThermoFactory.cpp, Cantera/src/ThermoFactory.h, Cantera/src/ThirdBodyMgr.h, Cantera/src/misc.cpp, Cantera/src/units.h, Cantera/src/utilities.h, Cantera/src/vec_functions.h, Cantera/src/transport/TransportFactory.cpp, Cantera/src/transport/TransportFactory.h, test_problems/silane_equil/Makefile.in, test_problems/surfkin/Makefile.in, tools/src/Makefile.in, tools/src/ctlibsample.mak.in, tools/src/sample.mak.in, tools/src/sample_f90.mak.in, tools/testtools/Makefile.in: changed some variable names to eliminate leading ddouble (and some single) underscores 2005-11-22 05:23 dggoodwin * win32/vc7/cantera/cantera.vcproj: updated 2005-11-18 00:21 dggoodwin * ext/tpx/Sub.cpp: added check in set_xy for density == Undef but T != Undef. Failure to check for this condition had resulted in convergence to the wrong root for Hydrogen. 2005-11-14 10:49 hkmoffa * Cantera/src/thermo/: Makefile.in, MolalityVPSSTP.cpp, MolalityVPSSTP.h, StoichSubstanceSSTP.h, VPStandardStateTP.cpp, VPStandardStateTP.h: Added a few more files to handle liquid electrochemistry thermo. 2005-11-14 10:47 hkmoffa * Cantera/src/: ThermoPhase.h, ThermoPhase.cpp: Added two sets of functions One, InitThermoFromXML() and InitThermoFromFile() initializes ThermoPhase objects from XML data trees. The second set, which is incomplete, works to create a duplication capability for ThermoPhase objects, using the function, duplMyselfAsThermoPhase(). 2005-11-14 10:41 hkmoffa * Cantera/src/: Phase.cpp, Phase.h: Addec copy constructor and assignment operator. 2005-11-13 03:15 dggoodwin * Cantera/src/: CVodesIntegrator.cpp, InterfaceKinetics.cpp, misc.cpp: removed some diagnostic output 2005-11-10 07:06 dggoodwin * Cantera/src/: CVode.cpp, CVodesIntegrator.cpp, CVodesIntegrator.h, ChemEquil.cpp, EdgeKinetics.cpp, FalloffMgr.h, Func1.h, FuncEval.h, GRI_30_Kinetics.cpp, ImplicitChem.cpp, ImplicitChem.h, ImplicitSurfChem.cpp, ImplicitSurfChem.h, Integrator.h, Makefile.in, MultiPhase.cpp, NasaPoly1.h, NasaThermo.h, ODE_integrators.cpp, ReactionPath.cpp, ReactionPath.h, SpeciesThermoFactory.cpp, ThermoPhase.cpp, ctvector.h, misc.cpp, transport/SolidTransport.cpp, transport/TransportBase.h: support for sensitivity analysis 2005-11-10 07:02 dggoodwin * Cantera/src/zeroD/: FlowReactor.h, FlowReactor.cpp: initial import 2005-10-31 08:29 dggoodwin * Cantera/src/SimpleThermo.h: corrected bug that caused problems if this SpeciesThermo manager was used in conjunction with another one (e.g. NASA). 2005-10-31 08:06 hkmoffa * Cantera/src/ChemEquil.cpp: Eliminated 2 unused variables. 2005-10-28 21:22 dggoodwin * Cantera/matlab/cantera/gaussian.m: initial import 2005-10-28 16:16 hkmoffa * Cantera/src/: GeneralSpeciesThermo.cpp, SpeciesThermoInterpType.h, thermo/SingleSpeciesTP.cpp: Added a virtual destructor for SpeciesThermoInterpType.h. Without it, there is a memory leak. 2005-10-24 15:13 hkmoffa * Cantera/src/thermo/SingleSpeciesTP.cpp: Forgot the member function getCp_R_ref() in the previous commit. This commit adds that function. 2005-10-24 14:57 hkmoffa * Cantera/cxx/include/thermo.h: Added the new file. 2005-10-24 14:52 hkmoffa * Cantera/src/thermo/: Makefile.in, SingleSpeciesTP.cpp, SingleSpeciesTP.h, StoichSubstanceSSTP.cpp, StoichSubstanceSSTP.h: Added an example of SingleSpeciesTP, called StoichSubstanceSSTP, which does the same thing as the StoichSubstance in the previous directory. Put more functionality in the SingleSpeciesTP level; it now evaluates the reference polynomials. 2005-10-24 14:38 hkmoffa * Cantera/src/ThermoPhase.h: Moved the getStandardChemPotentials() routine to the standard state functions member group. 2005-10-24 11:03 hkmoffa * Cantera/cxx/include/thermo.h: Added a thermo.h file to the cxx directory. This file is analogous to the transport.h file. 2005-10-24 10:03 hkmoffa * Cantera/src/ThermoPhase.h: Moved the getActivities and getActivityCoefficients() functions to the activities member group. 2005-10-24 09:41 dggoodwin * Cantera/src/: ODE_integrators.cpp, CVodesIntegrator.h, CVodesIntegrator.cpp: initial import 2005-10-24 08:39 hkmoffa * Cantera/src/: State.h, State.cpp: Added the copy constructor and assignment operator. 2005-10-21 17:53 hkmoffa * Cantera/src/importCTML.cpp: Generalization of the getStick() routine, to include the case where you have bulk reactants as well as surface reactants and a single gas phase reactant. 2005-10-21 17:35 hkmoffa * Cantera/src/MultiPhase.h: Added cvs information to the file. 2005-10-21 17:29 hkmoffa * Cantera/src/Makefile.in: Missed a .h file in the last commit. 2005-10-21 17:18 hkmoffa * Cantera/src/: ConstCpPoly.cpp, ConstCpPoly.h, GeneralSpeciesThermo.cpp, GeneralSpeciesThermo.h, Makefile.in, Mu0Poly.cpp, Mu0Poly.h, NasaPoly1.h, NasaPoly2.h, NasaThermo.h, ShomatePoly.h, ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h, SpeciesThermoFactory.cpp, SpeciesThermoInterpType.h, SpeciesThermoMgr.h, speciesThermoTypes.h: General commit for a reworking of the Species reference state thermo calculation. This is a reclarification of the reference state thermo calculations for individual species, and an expansion to handle liquid phase thermo needs. There is now a virtual base class for the calculation of reference state thermo functions for individual species. It is called SpeciesThermoInterpType. There is also a class which allows for a complete general calculation of the reference state species thermo for a phase, GeneralSpeciesThermo. Some of this new functionality may be relegated to ifdef blocks in the future to limit the amount of code for users who don't need the new functionality. 2005-10-21 15:44 hkmoffa * Cantera/src/reaction_defs.h: Added cvs info for this file. 2005-10-21 15:41 hkmoffa * Cantera/src/IdealGasPhase.h: Fixed an error in the doxygen comments that caused my version of doxygen to segfault. This was caused by member groups not having a closing bracket. 2005-10-21 15:25 hkmoffa * Cantera/src/: IdealGasPhase.cpp, IdealGasPhase.h: Filled out 2 missing functions to this ThermoPhase object: getIntEnergy_RT() and getIntEnergy_RT_ref(). 2005-10-21 15:16 hkmoffa * Cantera/src/ThermoPhase.h: Added a detailed doxygen member function description. 2005-10-21 15:15 hkmoffa * Cantera/src/StoichSubstance.h: Added more documentation to doxygen. 2005-10-21 14:57 hkmoffa * Cantera/src/StoichSubstance.h: Added 3 missing member functions. Note, this class is still not complete; it's missing the ref functions. 2005-10-21 14:42 hkmoffa * Cantera/src/Kinetics.h: Changed some comments so that they reflect the correct units. 2005-10-21 14:39 hkmoffa * Cantera/src/misc.cpp: Added entries to the errorhandling group in the doxygen documentation. 2005-10-21 14:38 hkmoffa * Cantera/src/Constituents.h: Eliminated a doxygen warning message. Also, took out the log file entry. 2005-10-21 14:35 hkmoffa * Cantera/src/ctexceptions.h: Just changed the comments. Added an errorhandling group to group together functions and classes dealing with error handling in the doxygen output. 2005-10-21 14:28 hkmoffa * Cantera/src/units.h: Added the unit 'gmol' to the list of recognized units. Added more accuracy to the eV unit. 2005-10-21 11:23 hkmoffa * Cantera/src/: Constituents.cpp, Constituents.h: Added a copy constructor and an assignment operator. 2005-10-21 09:18 hkmoffa * Cantera/src/: ThermoPhase.cpp, ThermoPhase.h: Added a routine to the ThermoPhase specification: activityConvention(). This has a default value of molar-based. The other option is molality based. 2005-10-21 08:51 hkmoffa * .cvsignore: Added the file config.h to this list. It's a generated file. 2005-10-20 17:57 dggoodwin * Cantera/python/examples/gasdynamics/soundSpeeds.py: initial import 2005-10-20 16:33 hkmoffa * config.h.in: Added a compilation define when electrolytes are included. 2005-10-20 16:31 hkmoffa * config/configure.in: Added support for compiling the src/thermo directory. 2005-10-20 16:30 hkmoffa * configure: Added the WITH_ELECTROLYTE keyword into the script. However, I have made the default so that the thermo directory is not compiled. 2005-10-20 16:29 hkmoffa * Cantera/src/Makefile.in: Added logic for including the thermo directory into the main compilation step. 2005-10-20 16:27 hkmoffa * Cantera/src/thermo/: .cvsignore, Makefile.in, SingleSpeciesTP.cpp, SingleSpeciesTP.h: Added the SingleSpeciesTP file as a trial commit. Want to get the bugs out of adding these files to the main distribution first. 2005-10-04 09:53 hkmoffa * Cantera/src/xml.cpp: Commented the _require() routine. 2005-09-29 14:05 hkmoffa * ext/tpx/: CarbonDioxide.cpp, Heptane.cpp: Fixed a compilation error on Linux. 2005-09-27 05:12 dggoodwin * Cantera/src/Constituents.cpp, Cantera/src/ThermoFactory.cpp, Cantera/src/ct_defs.h, Cantera/src/ctvector.cpp, Cantera/src/recipes.h, configure, Cantera/clib/src/ctonedim.cpp: minor cleanup 2005-09-27 05:08 dggoodwin * Cantera/src/Makefile.in: removed reference to recipes.h 2005-09-27 05:08 dggoodwin * Cantera/src/stringUtils.cpp: changed stripws to allow spaces in the middle of strings 2005-09-21 20:45 dggoodwin * Cantera/python/examples/equilibrium/adiabatic.py: added phi title to output csv file 2005-09-15 21:57 dggoodwin * Cantera/python/Cantera/liquidvapor.py, Cantera/python/examples/liquid_vapor/critProperties.py, Cantera/src/BandMatrix.cpp, data/inputs/liquidvapor.cti, tools/src/fixtext.cpp: changes to support the classes for CO2 and heptane in tpx 2005-09-15 21:55 dggoodwin * ext/tpx/: CarbonDioxide.cpp, CarbonDioxide.h, Heptane.cpp, Heptane.h, Makefile.in, subs.h, utils.cpp: added files for CO2 and heptane contributed by R. Hunt, Stanford 2005-09-15 08:59 dggoodwin * win32/vc7/SetupCantera/: SetupCantera.vdproj, SetupCanteraLite.vdproj: does not include static libs 2005-09-14 20:50 dggoodwin * Cantera/src/oneD/: Domain1D.cpp, MultiNewton.cpp, StFlow.cpp, StFlow.h, boundaries1D.cpp, oneD_files.cpp: changes to make solution of user-defined BVPs simpler. 2005-09-14 20:47 dggoodwin * Cantera/src/oneD/Inlet1D.h: overloaded setupGrid in boundary1D to do nothing. Without this, Domain1D::setupGrid would be called for connector domains. 2005-09-14 20:43 dggoodwin * Cantera/python/examples/equilibrium/multiphase_plasma.py: added comment 2005-09-14 20:40 dggoodwin * Cantera/python/examples/flames/adiabatic_flame.py: changed error tolerance for time integration. The previous large value of atol was causing problems. 2005-09-13 10:10 dggoodwin * Cantera/src/oneD/: Domain1D.cpp, Domain1D.h, Inlet1D.h, Sim1D.cpp, oneD_files.cpp: modifications to simplify solving boundary value problems 2005-09-01 20:41 dggoodwin * test_problems/ck2cti_test/: runtest.in, soot.inp, soot_blessed.cti, therm_soot.dat: added test of extensions for large molecules as implemented in the MIT soot mechanism. 2005-08-30 13:28 dggoodwin * test_problems/Makefile.in: removed silane_eqil 2005-08-30 13:28 dggoodwin * test_problems/python/: frac.cti, frac.py, frac_blessed.out, runtest: modified the frac test 2005-08-29 13:23 dggoodwin * win32/vc7/config_h/docopy.cmd: initial import 2005-08-26 09:28 hkmoffa * configure: Changed the default back to the case where Cantera will make its own lapack and blas libraries. 2005-08-26 07:59 hkmoffa * config/configure.in: Added an ending 'fi' 2005-08-18 20:17 dggoodwin * winconfig.h, Cantera/matlab/cantera/buildwin.m, Cantera/matlab/cantera/private/ctmethods.cpp, Cantera/matlab/cantera/private/mllogger.h, Cantera/matlab/cantera/private/write.cpp, Cantera/python/src/pycantera.cpp, Cantera/src/logger.h, Cantera/src/misc.cpp, Cantera/src/oneD/MultiJac.cpp, config/configure.in: corrected minor bugs in windows versions of files 2005-08-18 11:16 dggoodwin * configure, Cantera/src/State.cpp, config/configure, config/configure.in, ext/f2c_libs/arith.h: minor cleanup 2005-07-30 14:49 hkmoffa * Cantera/src/ctml.cpp: Fixed an error where Cantera would seg fault if errors in the XML file occurred. 2005-07-28 16:02 hkmoffa * Cantera/src/converters/CKParser.cpp: Got rid of one warning message. 2005-07-28 16:01 hkmoffa * Cantera/src/converters/ck2ct.cpp: Changed the format type of an fprintf statement. 2005-07-28 14:53 hkmoffa * Cantera/src/: ctml.cpp, ctml.h: Added the getMatrixValues routine. This routine fills in a matrix of doubles, keyed by a lookup name that determines the two indecises, e.g.: H+:Cl-:3.0E5 This introduces a triplet notation into the Cantera API. Added a parameter to the getFloatArray() routine, that has a default value -> so it shouldn't cause any changes to the API. 2005-07-28 14:40 hkmoffa * Cantera/src/: stringUtils.cpp, stringUtils.h: Added the atofCheck() routine. 2005-07-25 20:56 dggoodwin * winconfig.h, Cantera/src/EdgeKinetics.h, Cantera/src/InterfaceKinetics.cpp, Cantera/src/InterfaceKinetics.h, Cantera/src/Kinetics.h, Cantera/src/ReactionStoichMgr.cpp, Cantera/src/ReactionStoichMgr.h, Cantera/src/StoichManager.h, Cantera/src/converters/CKParser.cpp, Cantera/src/converters/Reaction.h, Cantera/src/converters/ck2ct.cpp: cleanup 2005-07-24 20:54 dggoodwin * Cantera/src/ReactionStoichMgr.cpp: changed how global reactions are handled 2005-07-24 20:53 dggoodwin * Cantera/src/converters/: CKReader.cpp, CKReader.h, ck2ct.cpp: support for fractional stoich coefficients 2005-07-24 20:52 dggoodwin * Cantera/src/converters/: Reaction.cpp, Reaction.h: added fwdOrder 2005-07-24 20:51 dggoodwin * Cantera/src/converters/CKParser.cpp: now recognizes the FORD keyword 2005-07-23 07:12 dggoodwin * test_problems/silane_equil/output_blessed.txt: SI chem potential changed in last digit 2005-07-22 06:33 dggoodwin * Cantera/src/ChemEquil.cpp, Cantera/src/GasKinetics.cpp, Cantera/src/GasKinetics.h, configure, ext/f2c_libs/arith.h: cleanup 2005-07-22 05:50 dggoodwin * examples/cxx/: Makefile.in, equil_example1.cpp, example_utils.h, examples.cpp, kinetics_example1.cpp, kinetics_example2.cpp, rxnpath_example1.cpp, transport_example1.cpp, transport_example2.cpp: updated 2005-07-22 05:50 dggoodwin * Cantera/src/equilibrate.cpp: minor cleanup 2005-07-22 05:36 dggoodwin * Cantera/python/setup.py.in: replaced g2c with ctf2c 2005-07-21 21:36 dggoodwin * Cantera/src/equil.h: changed default loglevel to 0. 2005-07-21 20:27 dggoodwin * Cantera/src/: ChemEquil.cpp, ChemEquil.h, equil.h, equilibrate.cpp, MultiPhase.cpp, MultiPhase.h, MultiPhaseEquil.cpp, MultiPhaseEquil.h: enhanced and cleaned up equilibrium code 2005-07-21 08:00 dggoodwin * test_problems/python/.cvsignore: fixed .cvsignore so that frac_blessed.out is not included 2005-07-16 05:19 dggoodwin * test_problems/python/frac_blessed.out: removed diagnostic messages 2005-07-14 11:44 dggoodwin * Cantera/src/: MultiPhase.cpp, MultiPhase.h, ChemEquil.h: improvements to equilibrate 2005-07-14 11:40 dggoodwin * Cantera/src/: importCTML.cpp, importCTML.h: allow tolerance on reaction element balances, rather than requiring precise balance 2005-07-02 11:46 hkmoffa * config/configure.in: Fixed an error in the configure.in file, where the F90 interface was requested to be not built, but an attempt to build it is made anyway -> windows cygwin interface. 2005-07-02 11:30 hkmoffa * configure: Took out an extraneous line that might be confusing. 2005-06-28 09:00 hkmoffa * Cantera/src/MultiPhase.cpp: Fixed a compilation error condition. Commented out the call to init() within updatePhases(). 2005-06-27 07:51 dggoodwin * Cantera/src/: MultiPhaseEquil.cpp, MultiPhaseEquil.h, MultiPhase.h, MultiPhase.cpp: cleanup 2005-06-25 08:57 dggoodwin * Makefile.in, Cantera/clib/src/ctmultiphase.cpp, Cantera/python/examples/.cvsignore, Cantera/python/examples/run_examples.py, Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhaseEquil.cpp, Cantera/src/MultiPhaseEquil.h: cleanup 2005-06-25 06:16 dggoodwin * Cantera/python/examples/: catcomb.py, critProperties.py, diamond.py, dustygas.py, flame1.py, flame2.py, function1.py, isentropic.py, mix1.py, mix2.py, npflame1.py, rankine.py, reactor1.py, reactor2.py, rxnpath1.py, rxnpath2.py, stflame1.py, flames/npflame1.py, flames/ohn.cti, gasdynamics/isentropic.py, liquid_vapor/critProperties.py, liquid_vapor/rankine.py, misc/rxnpath1.py, reactors/function1.py, reactors/mix1.py, reactors/mix2.py, reactors/reactor1.py, reactors/reactor2.py, surface_chemistry/catcomb.py, surface_chemistry/diamond.py, transport/dustygas.py: reorganized 2005-06-24 22:27 dggoodwin * Cantera/clib/src/ctmultiphase.cpp, Cantera/python/Cantera/OneD/__init__.py, Cantera/python/examples/catcomb.py, Cantera/python/examples/flames/ohn.cti, Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhase.h, Cantera/src/MultiPhaseEquil.cpp, Cantera/src/MultiPhaseEquil.h, Cantera/src/StoichManager.h, Cantera/src/ThermoPhase.h, Cantera/src/oneD/Domain1D.h, Cantera/src/oneD/OneDim.cpp, Cantera/src/oneD/StFlow.cpp, tools/src/package4mac.in, tools/templates/f77/demo.mak.in, tools/templates/f90/demo.mak.in: cleanup 2005-06-24 21:55 dggoodwin * win32/vc7/: cantera.sln, SetupCantera/SetupCantera.vdproj, cantera/cantera.vcproj: minor cleanup 2005-06-24 10:43 dggoodwin * apps/MixMaster/KineticsFrame.py: changed default to non-browser 2005-06-24 10:04 dggoodwin * README.txt: updated 2005-06-23 08:14 hkmoffa * config/: configure, configure.in: Took out the version number from the path directories. Simplified the installation variability in the process by taking out the choice for a distributed installation. Now, everything looks the same under the "Cantera Installation Directory Tree" hood, no matter what version is used. This should reduce the number of installation problems encountered. 2005-06-23 08:10 hkmoffa * Makefile.in: Changed the rm commands to use a common rule. On occasion make was failing because rm didn't have the -r option when it encountered directories. 2005-06-18 11:03 dggoodwin * Makefile.in: copy cti files to Python flame demo directory 2005-06-18 11:02 dggoodwin * Cantera/python/examples/flames/: free_h2_air.py, ohn.cti: add free H2/air flame example 2005-06-18 10:01 dggoodwin * tools/templates/cxx/demo.mak.in: Prerelease_1_6_0_branch merged into trunk 2005-06-18 09:58 dggoodwin * .cvsignore, ChangeLog, INSTALLING, Makefile.in, README, config.h.in, configure, winconfig.h, Cantera/Makefile.in, Cantera/clib/src/Cabinet.h, Cantera/clib/src/Makefile.in, Cantera/clib/src/Storage.cpp, Cantera/clib/src/ct.cpp, Cantera/clib/src/ct.h, Cantera/clib/src/ctfunc.cpp, Cantera/clib/src/ctmultiphase.cpp, Cantera/clib/src/ctmultiphase.h, Cantera/clib/src/ctonedim.cpp, Cantera/clib/src/ctonedim.h, Cantera/clib/src/ctreactor.cpp, Cantera/clib/src/ctrpath.cpp, Cantera/clib/src/ctxml.cpp, Cantera/cxx/Makefile.in, Cantera/cxx/demos/Makefile.in, Cantera/cxx/demos/flamespeed.cpp, Cantera/cxx/demos/kinetics1.cpp, Cantera/cxx/demos/rankine.cpp, Cantera/cxx/include/Cantera.h, Cantera/cxx/include/equilibrium.h, Cantera/cxx/include/importPhase.h, Cantera/cxx/include/integrators.h, Cantera/cxx/include/onedim.h, Cantera/cxx/include/transport.h, Cantera/cxx/include/zerodim.h, Cantera/cxx/src/cxxutils.cpp, Cantera/fortran/src/cantera_kinetics.f90, Cantera/fortran/src/cantera_thermo.f90, Cantera/matlab/Makefile.in, Cantera/matlab/setup_matlab.py.in, Cantera/matlab/cantera/buildwin.m, Cantera/matlab/cantera/ck2cti.m, Cantera/matlab/cantera/1D/@Domain1D/Domain1D.m, Cantera/matlab/cantera/1D/@Domain1D/private/domain_methods.m, Cantera/matlab/cantera/@Mixture/Mixture.m, Cantera/matlab/cantera/@Mixture/addPhase.m, Cantera/matlab/cantera/@Mixture/chemPotentials.m, Cantera/matlab/cantera/@Mixture/display.m, Cantera/matlab/cantera/@Mixture/elementIndex.m, Cantera/matlab/cantera/@Mixture/equilibrate.m, Cantera/matlab/cantera/@Mixture/mix_hndl.m, Cantera/matlab/cantera/@Mixture/nElements.m, Cantera/matlab/cantera/@Mixture/nPhases.m, Cantera/matlab/cantera/@Mixture/nSpecies.m, Cantera/matlab/cantera/@Mixture/phaseMoles.m, Cantera/matlab/cantera/@Mixture/pressure.m, Cantera/matlab/cantera/@Mixture/setPhaseMoles.m, Cantera/matlab/cantera/@Mixture/setPressure.m, Cantera/matlab/cantera/@Mixture/setSpeciesMoles.m, Cantera/matlab/cantera/@Mixture/setTemperature.m, Cantera/matlab/cantera/@Mixture/speciesIndex.m, Cantera/matlab/cantera/@Mixture/temperature.m, Cantera/matlab/cantera/@Mixture/private/mixturemethods.m, Cantera/matlab/cantera/@Reactor/mass.m, Cantera/matlab/cantera/@Reactor/setEnergy.m, Cantera/matlab/cantera/@Solution/display.m, Cantera/matlab/cantera/@ThermoPhase/display.m, Cantera/matlab/cantera/@ThermoPhase/equilibrate.m, Cantera/matlab/cantera/@ThermoPhase/name.m, Cantera/matlab/cantera/@ThermoPhase/setName.m, Cantera/matlab/cantera/@ThermoPhase/private/thermo_set.m, Cantera/matlab/cantera/examples/catcomb.m, Cantera/matlab/cantera/examples/flame1.m, Cantera/matlab/cantera/examples/ignite.m, Cantera/matlab/cantera/examples/ignite2.m, Cantera/matlab/cantera/examples/ignite3.m, Cantera/matlab/cantera/examples/ignite_hp.m, Cantera/matlab/cantera/examples/ignite_uv.m, Cantera/matlab/cantera/examples/test_examples.m, Cantera/matlab/cantera/private/ctfunctions.cpp, Cantera/matlab/cantera/private/ctmatutils.h, Cantera/matlab/cantera/private/ctmethods.cpp, Cantera/matlab/cantera/private/mixturemethods.cpp, Cantera/matlab/cantera/private/onedimmethods.cpp, Cantera/matlab/cantera/private/phasemethods.cpp, Cantera/matlab/cantera/private/thermomethods.cpp, Cantera/matlab/cantera/private/write.cpp, Cantera/matlab/cantera/tutorial/tut1.m, Cantera/matlab/cantera/tutorial/tut4.m, Cantera/python/Makefile.in, Cantera/python/ctml_writer.py, Cantera/python/setup.py.in, Cantera/python/winsetup.py, Cantera/python/Cantera/Kinetics.py, Cantera/python/Cantera/Phase.py, Cantera/python/Cantera/ThermoPhase.py, Cantera/python/Cantera/__init__.py, Cantera/python/Cantera/ck2cti.py, Cantera/python/Cantera/constants.py, Cantera/python/Cantera/mixture.py, Cantera/python/Cantera/num.py, Cantera/python/Cantera/OneD/BurnerFlame.py, Cantera/python/Cantera/OneD/FreeFlame.py, Cantera/python/Cantera/OneD/onedim.py, Cantera/python/examples/flame1.py, Cantera/python/examples/equilibrium/KOH.cti, Cantera/python/examples/equilibrium/adiabatic.py, Cantera/python/examples/equilibrium/multiphase_plasma.py, Cantera/python/examples/equilibrium/plotting.py, Cantera/python/examples/equilibrium/simple.py, Cantera/python/examples/equilibrium/stoich.py, Cantera/python/examples/flames/adiabatic_flame.py, Cantera/python/examples/flames/flame1.py, Cantera/python/examples/flames/flame2.py, Cantera/python/examples/flames/stflame1.py, Cantera/python/examples/kinetics/ratecoeffs.py, Cantera/python/src/cantera.def, Cantera/python/src/ct.def, Cantera/python/src/ctflow.def, Cantera/python/src/ctfuncs.cpp, Cantera/python/src/ctkinetics.def, Cantera/python/src/ctmultiphase_methods.cpp, Cantera/python/src/ctnumerics.def, Cantera/python/src/ctonedim_methods.cpp, Cantera/python/src/ctphase.def, Cantera/python/src/ctphase_methods.cpp, Cantera/python/src/ctsurf.def, Cantera/python/src/ctthermo.def, Cantera/python/src/ctthermo_methods.cpp, Cantera/python/src/cttransport.def, Cantera/python/src/methods.h, Cantera/python/src/pycantera.cpp, Cantera/python/src/pylogger.h, Cantera/python/src/pyutils.h, Cantera/src/.cvsignore, Cantera/src/Array.h, Cantera/src/ArrayViewer.h, Cantera/src/BandMatrix.h, Cantera/src/ChemEquil.cpp, Cantera/src/ChemEquil.h, Cantera/src/ConstDensityThermo.cpp, Cantera/src/ConstDensityThermo.h, Cantera/src/Constituents.cpp, Cantera/src/Constituents.h, Cantera/src/Elements.cpp, Cantera/src/Elements.h, Cantera/src/GRI_30_Kinetics.cpp, Cantera/src/GasKinetics.cpp, Cantera/src/GasKinetics.h, Cantera/src/IdealGasPhase.cpp, Cantera/src/IdealGasPhase.h, Cantera/src/ImplicitSurfChem.cpp, Cantera/src/InterfaceKinetics.cpp, Cantera/src/InterfaceKinetics.h, Cantera/src/Kinetics.cpp, Cantera/src/Kinetics.h, Cantera/src/KineticsFactory.cpp, Cantera/src/LatticeSolidPhase.cpp, Cantera/src/LatticeSolidPhase.h, Cantera/src/Makefile.in, Cantera/src/MetalPhase.h, Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhase.h, Cantera/src/MultiPhaseEquil.cpp, Cantera/src/MultiPhaseEquil.h, Cantera/src/Phase.cpp, Cantera/src/Phase.h, Cantera/src/RateCoeffMgr.h, Cantera/src/ReactionData.h, Cantera/src/ReactionStoichMgr.cpp, Cantera/src/ReactionStoichMgr.h, Cantera/src/RxnRates.h, Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/State.h, Cantera/src/StoichManager.h, Cantera/src/StoichSubstance.cpp, Cantera/src/StoichSubstance.h, Cantera/src/SurfPhase.h, Cantera/src/ThermoFactory.cpp, Cantera/src/ThermoPhase.cpp, Cantera/src/ThermoPhase.h, Cantera/src/config.h, Cantera/src/ct2ctml.cpp, Cantera/src/ct_defs.h, Cantera/src/ctexceptions.h, Cantera/src/ctml.cpp, Cantera/src/ctvector.cpp, Cantera/src/global.h, Cantera/src/importCTML.cpp, Cantera/src/logger.h, Cantera/src/misc.cpp, Cantera/src/mix_defs.h, Cantera/src/phasereport.cpp, Cantera/src/reaction_defs.h, Cantera/src/units.h, Cantera/src/utilities.h, Cantera/src/converters/Makefile.in, Cantera/src/converters/ck2ct.cpp, Cantera/src/converters/ck2ct.h, Cantera/src/oneD/Domain1D.h, Cantera/src/oneD/Inlet1D.h, Cantera/src/oneD/Makefile.in, Cantera/src/oneD/OneDim.cpp, Cantera/src/oneD/StFlow.cpp, Cantera/src/oneD/StFlow.h, Cantera/src/oneD/boundaries1D.cpp, Cantera/src/transport/Makefile.in, Cantera/src/transport/MultiTransport.cpp, Cantera/src/transport/SolidTransport.cpp, Cantera/src/transport/TransportFactory.cpp, Cantera/src/zeroD/FlowDevice.cpp, Cantera/src/zeroD/FlowDevice.h, Cantera/src/zeroD/Makefile.in, Cantera/src/zeroD/PID_Controller.h, Cantera/src/zeroD/Reactor.cpp, Cantera/src/zeroD/Reactor.h, Cantera/src/zeroD/ReactorBase.cpp, Cantera/src/zeroD/ReactorBase.h, Cantera/src/zeroD/ReactorNet.cpp, Cantera/src/zeroD/ReactorNet.h, Cantera/src/zeroD/Reservoir.h, Cantera/src/zeroD/Wall.cpp, Cantera/src/zeroD/Wall.h, Cantera/src/zeroD/flowControllers.h, apps/MixMaster/KineticsFrame.py, apps/MixMaster/Mix.py, apps/MixMaster/ThermoFrame.py, apps/MixMaster/ThermoProp.py, config/configure, config/configure.in, data/inputs/elements.xml, data/inputs/nasa.cti, data/inputs/nasa_condensed.cti, data/inputs/nasa_gas.cti, examples/cxx/Makefile.in, examples/cxx/equil_example1.cpp, examples/cxx/examples.cpp, examples/cxx/kinetics_example1.cpp, ext/Makefile.in, ext/blas/Makefile.in, ext/cvode/Makefile.in, ext/f2c_blas/Makefile.in, ext/f2c_lapack/Makefile.in, ext/f2c_libs/Makefile.in, ext/f2c_libs/arith.h, ext/f2c_math/.cvsignore, ext/f2c_math/Makefile.in, ext/f2c_math/fdump.c, ext/f2c_recipes/Makefile.in, ext/lapack/Makefile.in, ext/math/Makefile.in, ext/recipes/Makefile.in, ext/tpx/.depends, ext/tpx/Makefile.in, test_problems/ck2cti_test/gri30a_blessed.cti, test_problems/ck2cti_test/runtest.in, test_problems/diamondSurf/Makefile.in, test_problems/diamondSurf/diamond_blessed.xml, test_problems/diamondSurf/runDiamond.cpp, test_problems/python/flame1_blessed.csv, test_problems/python/flame1_blessed_linux.csv, test_problems/python/frac.cti, test_problems/python/frac.py, test_problems/python/frac_blessed.out, test_problems/python/runtest, test_problems/silane_equil/Makefile.in, test_problems/silane_equil/output_blessed.txt, test_problems/silane_equil/silane_equil.cpp, test_problems/surfkin/Makefile.in, tools/doc/Cantera.cfg, tools/doc/footer.html, tools/doc/header.html, tools/doc/doxyinput/Cantera.txt, tools/doc/doxyinput/build.txt, tools/doc/doxyinput/ctnew.txt, tools/doc/doxyinput/cxx-headers.txt, tools/doc/doxyinput/demo.cpp, tools/doc/doxyinput/demo1.cpp, tools/doc/doxyinput/demo1a.cpp, tools/doc/doxyinput/demoequil.cpp, tools/doc/doxyinput/equildemo.txt, tools/doc/doxyinput/ex1.cpp, tools/doc/doxyinput/except.cpp, tools/doc/doxyinput/exceptions.txt, tools/doc/doxyinput/introcxx.txt, tools/doc/doxyinput/languages.txt, tools/doc/doxyinput/thermo.txt, tools/doc/doxyinput/thermodemo.cpp, tools/doc/doxyinput/thermodemo.txt, tools/src/Makefile.in, tools/src/ck2cti.cpp, tools/src/findtag.py, tools/src/finish_install.py.in, tools/src/fixtext.cpp, tools/src/package4mac.in: Prerelease_1_6_0_branch merged into trunk 2005-06-17 20:18 dggoodwin * Cantera/python/Cantera/OneD/FreeFlame.py: initial import 2005-06-16 22:49 dggoodwin * Cantera/matlab/cantera/@Mixture/: Mixture.m, chemPotentials.m, display.m, elementIndex.m, equilibrate.m, mix_hndl.m, nElements.m, nSpecies.m, phaseMoles.m, pressure.m, setPhaseMoles.m, setPressure.m, setSpeciesMoles.m, setTemperature.m, speciesIndex.m, temperature.m: initial import 2005-06-16 22:46 dggoodwin * Cantera/python/examples/flames/adiabatic_flame.py: initial import 2005-06-16 15:59 dggoodwin * Cantera/matlab/cantera/@Solution/display.m: use display method inherited from ThermoPhase 2005-06-15 20:08 dggoodwin * Makefile.in, Cantera/matlab/cantera/examples/prandtl1.m, Cantera/python/setup.py.in, Cantera/src/ChemEquil.cpp, Cantera/src/MultiPhaseEquil.cpp: changes to make ChemEquil more stable 2005-06-09 15:27 dggoodwin * configure, Cantera/cxx/demos/Makefile.in, examples/cxx/Makefile.in, examples/cxx/equil_example1.cpp, test_problems/silane_equil/Makefile.in, test_problems/surfkin/Makefile.in: minor cleanup 2005-06-08 15:36 dggoodwin * configure, Cantera/matlab/setup_matlab.py.in, Cantera/python/setup.py.in, Cantera/src/oneD/StFlow.cpp, Cantera/src/oneD/StFlow.h, Cantera/src/oneD/boundaries1D.cpp, config/configure, config/configure.in, tools/templates/cxx/demo.mak.in: support for the Accelerate framework on the Mac 2005-06-07 22:29 dggoodwin * Cantera/python/examples/equilibrium/: KOH.cti, adiabatic.py, multiphase_plasma.py, simple.py, stoich.py: initial import 2005-06-07 20:54 dggoodwin * test_problems/python/flame1_blessed_linux.csv: updated blessed file 2005-06-07 19:43 dggoodwin * Cantera/matlab/cantera/private/mixturemethods.cpp: support for multiphase mixtures 2005-06-06 07:28 hkmoffa * Cantera/src/transport/TransportFactory.cpp: Added comments. 2005-05-22 14:07 dggoodwin * test_problems/python/: frac.cti, frac.py, frac_blessed.out, runtest: fractional stoichiometric coefficient test 2005-05-22 13:38 dggoodwin * Cantera/src/GasKinetics.cpp, Cantera/src/GasKinetics.h, Cantera/src/ReactionStoichMgr.cpp, Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/StoichManager.h, Cantera/src/ct2ctml.cpp, Cantera/src/mix_defs.h, configure, Cantera/clib/src/ct.cpp, Cantera/clib/src/ct.h, Cantera/clib/src/ctmultiphase.cpp, Cantera/clib/src/ctmultiphase.h, Cantera/fortran/src/cantera_kinetics.f90, Cantera/fortran/src/cantera_thermo.f90, Cantera/matlab/Makefile.in, Cantera/matlab/setup_matlab.py.in, Cantera/matlab/cantera/@ThermoPhase/name.m, Cantera/matlab/cantera/private/ctmethods.cpp, Cantera/matlab/cantera/private/phasemethods.cpp, Cantera/matlab/cantera/private/thermomethods.cpp, Cantera/matlab/cantera/private/write.cpp, Cantera/python/Cantera/Kinetics.py, Cantera/python/Cantera/Mixture.py, Cantera/python/Cantera/ThermoPhase.py, Cantera/python/Cantera/mixture.py, Cantera/python/src/ctthermo_methods.cpp, tools/doc/doxyinput/Cantera.txt, tools/doc/doxyinput/ctnew.txt, tools/doc/doxyinput/demo1a.cpp, tools/doc/doxyinput/introcxx.txt: support for fractional stoichiometric coefficients 2005-05-19 15:15 hkmoffa * Cantera/src/units.h: Added in more units: nm nanometers Angstrom Angstroms Activation Energy Units: Kelvin (GasConstant) Dimensionless (273.15 * GasConstant) -> specification of dimensionless gibbs free energies is common in electrochemistry. However, you have to multiply by the current temperature to convert correctly here. 2005-05-01 06:58 dggoodwin * Cantera/src/: Array.h, ArrayViewer.h, BandMatrix.h, ChemEquil.h, Kinetics.h, MultiPhase.cpp, MultiPhase.h, MultiPhaseEquil.cpp, MultiPhaseEquil.h, ReactionData.h, ReactionStoichMgr.cpp, ReactionStoichMgr.h, StoichManager.h, ct_defs.h, ctml.cpp, global.h, importCTML.cpp, phasereport.cpp: added support for non-integral product stoichiometric coefficients 2005-04-23 10:14 dggoodwin * Cantera/matlab/cantera/@Mixture/: Mixture.m, addPhase.m, mix_hndl.m, nPhases.m, private/mixturemethods.m: initial import 2005-04-23 10:12 dggoodwin * Cantera/matlab/cantera/@ThermoPhase/: equilibrate.m, name.m, setName.m, private/thermo_set.m: added name and setName methods 2005-04-22 19:42 dggoodwin * Cantera/matlab/cantera/examples/: ignite.m, ignite2.m, ignite3.m, ignite_hp.m, ignite_uv.m: corrected plot labels to be mass, rather than mole, fractions 2005-04-17 08:48 hkmoffa * Cantera/src/global.h: Added cvs id information. 2005-04-15 12:47 hkmoffa * ext/Makefile.in: Changed the Makefile to always make f2c_libs. Applications may have use of this even if Cantera doesn't actually use f2c. 2005-04-15 12:01 hkmoffa * Cantera/cxx/demos/kinetics1.cpp: Added in the cantera/Cantera.h include file. It seemed to need it to compile in the demo directory of the install directory. 2005-04-13 04:17 dggoodwin * Cantera/python/examples/: equilibrium/adiabatic.py, equilibrium/plotting.py, flames/flame1.py, flames/flame2.py, flames/stflame1.py, kinetics/ratecoeffs.py: updated examples 2005-04-06 17:03 dggoodwin * Cantera/matlab/cantera/buildwin.m, win32/vc7/SetupCantera/SetupCantera.vdproj: minor changes to SetupCantera 2005-04-01 20:37 dggoodwin * Cantera/python/Cantera/constants.py: changed GasConstant to 1999 CODATA value 2005-04-01 15:21 dggoodwin * CVSROOT/commitinfo: enabled cvs_acls 2005-04-01 15:19 dggoodwin * CVSROOT/: avail, checkoutlist: added avail 2005-04-01 06:29 dggoodwin * tools/doc/: Cantera.cfg, doxyinput/Cantera.txt, doxyinput/build.txt, doxyinput/ctnew.txt, doxyinput/cxx-headers.txt, doxyinput/demo.cpp, doxyinput/demo1.cpp, doxyinput/demo1a.cpp, doxyinput/demoequil.cpp, doxyinput/equildemo.txt, doxyinput/ex1.cpp, doxyinput/except.cpp, doxyinput/exceptions.txt, doxyinput/introcxx.txt, doxyinput/languages.txt, doxyinput/thermo.txt, doxyinput/thermodemo.cpp, doxyinput/thermodemo.txt: new doxygen files 2005-03-31 17:10 dggoodwin * Cantera/src/: IdealGasPhase.h, State.h, ThermoPhase.h, misc.cpp, utilities.h: updated comments 2005-03-30 09:33 hkmoffa * Cantera/src/ThermoPhase.h: Fixed a comment section that incorrectly identified a function as returning a Gibbs energy when it actually returned a Heat capacity. 2005-03-30 08:03 hkmoffa * Makefile.in: Took residual particle Makefile stuff out of this file. 2005-03-30 08:02 hkmoffa * Cantera/Makefile.in: Took residual particle configure stuff out of this file. 2005-03-30 08:00 hkmoffa * config/configure.in: Took residual particle stuff out of this file. 2005-03-23 12:54 hkmoffa * Cantera/src/.cvsignore: Added *.d 2005-03-09 12:48 dggoodwin * Cantera/python/ctml_writer.py: added support for fractional product stoichiometric coefficients in global irreversible reactions 2005-03-05 07:43 dggoodwin * Cantera/src/: LatticeSolidPhase.h, LatticeSolidPhase.cpp: initial import 2005-02-25 04:48 dggoodwin * Makefile.in, config/configure, config/configure.in: g95 changes 2005-02-24 19:52 dggoodwin * Makefile.in, Cantera/python/setup.py.in, config/configure, config/configure.in, tools/src/finish_install.py.in: minor cleanup 2005-02-24 11:01 dggoodwin * Cantera/src/converters/ck2ct.cpp: minor cleanup 2005-02-24 11:01 dggoodwin * Cantera/src/config.h: added check for CANTERA_APP 2005-02-24 11:01 dggoodwin * Cantera/cxx/include/Cantera.h: added definition of CANTERA_APP, which is used in Cantera/src/config.h to control where to find the config file 2005-02-24 10:59 dggoodwin * test_problems/: diamondSurf/runDiamond.cpp, silane_equil/silane_equil.cpp: added #include for file Cantera.h 2005-02-24 10:59 dggoodwin * test_problems/silane_equil/output_blessed.txt: changed output format 2005-02-24 08:54 dggoodwin * tools/src/findtag.py: initial import 2005-02-22 21:27 dggoodwin * CVSROOT/loginfo: added syncmail 2005-02-17 09:35 dggoodwin * apps/MixMaster/: Mix.py, ThermoFrame.py, ThermoProp.py: minor changes 2005-02-17 08:25 dggoodwin * apps/MixMaster/KineticsFrame.py: added scrollbar to reaction window 2005-02-16 22:12 dggoodwin * apps/MixMaster/KineticsFrame.py: changed default reaction path diagram format to SVG 2005-02-10 00:15 dggoodwin * Cantera/src/Makefile.in: minor win32 bug fixes 2005-02-10 00:10 dggoodwin * Cantera/clib/src/ct.h, Cantera/matlab/cantera/buildwin.m, Cantera/matlab/cantera/private/ctmethods.cpp, Cantera/python/src/pycantera.cpp, Cantera/src/MultiPhase.cpp, Cantera/src/config.h, Cantera/src/converters/ck2ct.cpp, win32/vc7/cantera.sln, win32/vc7/cantera/cantera.vcproj, win32/vc7/tpx/tpx.vcproj: minor win32 bug fixes 2005-02-09 02:26 dggoodwin * Makefile.in, configure, Cantera/clib/src/ct.cpp, Cantera/clib/src/ct.h, Cantera/python/Cantera/Mixture.py, Cantera/python/Cantera/__init__.py, Cantera/python/Cantera/mixture.py, Cantera/python/examples/equilibrium/adiabatic.py, Cantera/python/examples/equilibrium/plotting.py, Cantera/python/src/ctfuncs.cpp, Cantera/python/src/ctthermo_methods.cpp, Cantera/python/src/methods.h, Cantera/python/src/pycantera.cpp, Cantera/python/src/pyutils.h, tools/src/package4mac.in: support for HTML log files. 2005-02-09 02:23 dggoodwin * Cantera/src/: MultiPhase.cpp, MultiPhaseEquil.cpp, misc.cpp: support for HTML log files. 2005-02-08 08:52 dggoodwin * config/: configure, configure.in: corrected error in g95 options 2005-02-03 13:44 dggoodwin * Cantera/python/examples/equilibrium/adiabatic.py: initial import 2005-02-02 12:07 dggoodwin * test_problems/ck2cti_test/runtest.in: minor output format change 2005-02-02 11:59 dggoodwin * test_problems/ck2cti_test/gri30a_blessed.cti: minor output format change 2005-02-02 11:37 dggoodwin * Cantera/src/config.h: not needed in repository 2005-02-02 11:10 dggoodwin * Cantera/: clib/src/Cabinet.h, clib/src/ctfunc.cpp, clib/src/ctmultiphase.cpp, clib/src/ctonedim.cpp, clib/src/ctreactor.cpp, clib/src/ctrpath.cpp, clib/src/ctxml.cpp, src/config.h: added template<> 2005-02-01 15:27 dggoodwin * Cantera/python/: Makefile.in, Cantera/Phase.py, Cantera/num.py, src/pycantera.cpp: changed numarray/Numeric selection to avoid importing the wrong module 2005-02-01 07:22 dggoodwin * Cantera/python/src/: cantera.def, ct.def, ctflow.def, ctkinetics.def, ctnumerics.def, ctphase.def, ctphase_methods.cpp, ctsurf.def, ctthermo.def, cttransport.def: removed unused files 2005-01-31 10:54 dggoodwin * Cantera/matlab/: Makefile.in, cantera/ck2cti.m, cantera/private/ctfunctions.cpp: added support for ck2cti without requiring external program 2005-01-31 04:20 dggoodwin * Cantera/python/Cantera/ck2cti.py: initial import 2005-01-31 04:18 dggoodwin * Cantera/: clib/src/ct.cpp, clib/src/ct.h, clib/src/ctmultiphase.cpp, clib/src/ctmultiphase.h, python/Makefile.in, python/setup.py.in, python/Cantera/Mixture.py, python/Cantera/mixture.py, python/src/ctfuncs.cpp, python/src/ctmultiphase_methods.cpp, python/src/methods.h: added function ck2cti 2005-01-31 04:18 dggoodwin * Cantera/src/converters/ck2ct.cpp: printf and stream i/o changed to fprintf to allow writing cti file to a file rather than to the standard output 2005-01-31 04:16 dggoodwin * Cantera/src/phasereport.cpp: only print mu for non-zero species 2005-01-28 18:57 dggoodwin * Cantera/clib/src/: Storage.cpp, ct.cpp: corrected a problem with phases with identical names 2005-01-28 18:46 dggoodwin * Cantera/python/Cantera/Kinetics.py: corrected a problem with phases with identical names 2005-01-24 19:48 dggoodwin * ext/: f2c_lapack/Makefile.in, f2c_math/.cvsignore: added files to .cvsignore 2005-01-24 19:41 dggoodwin * ChangeLog, Makefile.in, configure, Cantera/cxx/demos/Makefile.in, Cantera/cxx/demos/demos.cpp, Cantera/cxx/demos/flamespeed.cpp, Cantera/cxx/demos/kin1_blessed.csv, Cantera/cxx/demos/kin1_blessed.dat, Cantera/cxx/demos/kinetics1.cpp, Cantera/cxx/demos/rankine.cpp, Cantera/python/Cantera/liquidvapor.py, Cantera/src/config.h, Cantera/src/misc.cpp, Cantera/src/phasereport.cpp, bin/mixmaster.py, config/configure, config/configure.in, data/inputs/liquidvapor.cti, ext/tpx/.depends, ext/tpx/HFC134a.cpp, ext/tpx/HFC134a.h, ext/tpx/Makefile.in, ext/tpx/subs.h, ext/tpx/utils.cpp, tools/bin/erase: fixed problem with dependencies for ck2cti 2005-01-24 19:38 dggoodwin * tools/src/ck2cti.cpp, Cantera/src/converters/ck2ct.cpp, Cantera/src/converters/ck2ct.h: added validate option 2005-01-24 07:06 dggoodwin * Makefile.in, configure, Cantera/cxx/demos/Makefile.in, Cantera/cxx/demos/demos.cpp, Cantera/cxx/demos/flamespeed.cpp, Cantera/cxx/demos/kinetics1.cpp, Cantera/cxx/demos/rankine.cpp, Cantera/src/config.h, Cantera/src/misc.cpp, ext/tpx/.depends, ext/tpx/utils.cpp, tools/bin/erase: changed C++ demos 2005-01-24 03:32 dggoodwin * Cantera/cxx/demos/: Makefile.in, demos.cpp, flamespeed.cpp, kin1_blessed.csv, kin1_blessed.dat, kinetics1.cpp, rankine.cpp: added program demo to run all demos 2005-01-22 04:48 dggoodwin * win32/vc7/: SetupCantera/SetupCantera.vdproj, cantera/cantera.vcproj, ck2cti/ck2cti.vcproj, converters/converters.vcproj, ctmatlab/ctmatlab.vcproj, ctpython/ctpython.vcproj, cvode/cvode.vcproj, cxxutils/cxxutils.vcproj, f2c_blas/f2c_blas.vcproj, f2c_lapack/f2c_lapack.vcproj, f2c_libs/f2c_libs.vcproj, f2c_math/f2c_math.vcproj, f2c_recipes/f2c_recipes.vcproj, oneD/oneD.vcproj, tpx/tpx.vcproj, transport/transport.vcproj, zeroD/zeroD.vcproj: added hfc134a to Cantera 2005-01-19 13:22 dggoodwin * data/inputs/: nasa.cti, nasa_condensed.cti, nasa_gas.cti: separated gaseous and condensed-phase species 2005-01-18 06:36 dggoodwin * ext/tpx/HFC134a.h: fixed include error 2005-01-14 05:41 dggoodwin * configure, Cantera/python/Cantera/liquidvapor.py, Cantera/src/phasereport.cpp, bin/mixmaster.py, data/inputs/liquidvapor.cti, ext/f2c_libs/arith.h, ext/tpx/HFC134a.cpp, ext/tpx/HFC134a.h, ext/tpx/Makefile.in, ext/tpx/subs.h, ext/tpx/utils.cpp: added HFC134a 2005-01-13 10:02 hkmoffa * Cantera/src/StoichSubstance.h: Added a "get" in front of some void functions. 2005-01-13 06:02 dggoodwin * Cantera/src/: ChemEquil.h, ThermoPhase.h, config.h, oneD/Domain1D.h, oneD/StFlow.cpp: changed code related to adiabatic flame 2005-01-13 05:58 dggoodwin * Cantera/matlab/cantera/: @ThermoPhase/equilibrate.m, private/thermomethods.cpp: added option to select equil solver 2005-01-13 05:58 dggoodwin * Cantera/matlab/cantera/examples/: catcomb.m, flame1.m, prandtl1.m, test_examples.m: added script to test selected examples without pausing 2005-01-12 16:33 hkmoffa * Cantera/src/ThermoPhase.h: Forgot to add to functions to ThermoPhase.h: getActivityCoefficents() getStandardVolumes() 2005-01-12 15:09 hkmoffa * Cantera/src/: ConstDensityThermo.cpp, ConstDensityThermo.h, GRI_30_Kinetics.cpp, GasKinetics.cpp, GasKinetics.h, IdealGasPhase.cpp, IdealGasPhase.h, StoichSubstance.cpp, StoichSubstance.h, ThermoPhase.h, config.h, oneD/StFlow.cpp, transport/MultiTransport.cpp, transport/TransportFactory.cpp: This delta contains the suggested changes to the ThermoPhase API. It clears up the distinction between the quantities calculated from the standard state and quantitities that are calculated based on the "reference state". The reference state is at a fixed pressure, while the standard state is at the T and P of the solution. The delta also contains changes to the implementation of the Ideal Gas Law. The standard concentration is now defined to be equal to p/RT instead of the previous value of p_ref/RT. Also, as a consequence the returned values of the activities will be equal to the solution mole fractions. Numerically, equilibrium constants and reaction rates are the same up to numerical round-off error. 2005-01-12 08:03 hkmoffa * Cantera/clib/src/Makefile.in: Fixed an error in this Makefile. libclib.a was being installed in the lib directory itself with the name "cantera". Now it is being installed in ctversion/libclib.a 2005-01-11 18:22 hkmoffa * .cvsignore, Makefile.in, Cantera/clib/src/Makefile.in, Cantera/cxx/Makefile.in, Cantera/cxx/demos/Makefile.in, Cantera/src/Kinetics.cpp, Cantera/src/Kinetics.h, Cantera/src/KineticsFactory.cpp, Cantera/src/Makefile.in, Cantera/src/config.h, Cantera/src/ctvector.cpp, Cantera/src/converters/Makefile.in, Cantera/src/oneD/Makefile.in, Cantera/src/transport/Makefile.in, Cantera/src/zeroD/Makefile.in, config/configure, config/configure.in, ext/blas/Makefile.in, ext/cvode/Makefile.in, ext/f2c_blas/Makefile.in, ext/f2c_lapack/Makefile.in, ext/f2c_libs/Makefile.in, ext/f2c_math/Makefile.in, ext/f2c_recipes/Makefile.in, ext/lapack/Makefile.in, ext/math/Makefile.in, ext/recipes/Makefile.in, ext/tpx/Makefile.in, tools/src/Makefile.in, tools/templates/cxx/demo.mak.in: Revision of the Makefiles to eliminate extra work in recompiles. No linking or compilation will be done if not necessary .h files are sent to build/include tree in the lower level makefiles, as a consequence. Kinetics.cpp new file was created by taking routines in KineticsFactory.cpp and placing them in the new file. demo.mak.in now has a CXX_END_LIBS capability. My linux system needs this for some reason. 2005-01-11 18:19 hkmoffa * configure: Changed the default for NEED_NUMERIC from 'n' to 'y' to help with backwards compatibility with previous releases. 2005-01-10 06:57 dggoodwin * tools/doc/python/mkmkdoc.py: initial import 2005-01-09 12:29 dggoodwin * config.h, configure, Cantera/clib/src/ct.cpp, Cantera/clib/src/ctmultiphase.cpp, Cantera/cxx/include/PureFluid.h, Cantera/cxx/src/writelog.cpp, Cantera/python/ctml_writer.py, Cantera/python/winsetup.py, Cantera/python/Cantera/Mixture.py, Cantera/python/Cantera/mixture.py, Cantera/python/Cantera/num.py, Cantera/src/ChemEquil.cpp, Cantera/src/ChemEquil.h, Cantera/src/Constituents.cpp, Cantera/src/ImplicitChem.cpp, Cantera/src/InterfaceKinetics.h, Cantera/src/Makefile.in, Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhase.h, Cantera/src/MultiPhaseEquil.cpp, Cantera/src/MultiPhaseEquil.h, Cantera/src/PureFluidPhase.h, Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/ThermoFactory.cpp, Cantera/src/config.h, Cantera/src/ct2ctml.cpp, Cantera/src/global.h, Cantera/src/importCTML.h, Cantera/src/converters/CKParser.cpp, Cantera/src/oneD/StFlow.cpp, Cantera/src/transport/Makefile.in, Cantera/src/zeroD/Makefile.in, Cantera/src/zeroD/flowControllers.h, apps/MixMaster/DataFrame.py, apps/MixMaster/DataGraph.py, apps/MixMaster/Mix.py, apps/MixMaster/main.py, bin/mixmaster.py, data/inputs/graphite.cti, data/inputs/water.cti, tools/src/package4mac.in, tools/testtools/csvdiff.cpp: trunk changes merged in 2005-01-09 11:32 dggoodwin * tools/testtools/csvdiff.cpp: modified csvdiff to allow larger error bounds when solution is changing rapidly 2005-01-09 10:58 dggoodwin * test_problems/silane_equil/output_blessed.txt: updated blessed output due to format change 2005-01-08 14:27 dggoodwin * data/inputs/: graphite.cti, water.cti: added water.cti 2005-01-07 17:10 dggoodwin * win32/vc7/: cantera/cantera.vcproj, config_h/config_h.vcproj: added a file to project cantera 2005-01-07 16:59 dggoodwin * win32/vc7/config_h/config_h.vcproj: added project config_h 2005-01-07 16:29 dggoodwin * win32/vc7/demos/: CanteraDemos.sln, Rankine.vcproj: added project rankine 2005-01-07 02:26 dggoodwin * Cantera/: clib/src/ct.cpp, clib/src/ct.h, cxx/demos/Makefile.install, cxx/demos/rankine.cpp, cxx/src/writelog.cpp, src/ChemEquil.h, src/Constituents.cpp, src/DenseMatrix.cpp, src/ImplicitChem.cpp, src/InterfaceKinetics.cpp, src/InterfaceKinetics.h, src/Makefile.in, src/PureFluidPhase.cpp, src/PureFluidPhase.h, src/ShomateThermo.h, src/ThermoFactory.cpp, src/config.h, src/ct2ctml.cpp, src/global.h, src/importCTML.h, src/converters/CKParser.cpp, src/converters/CKParser.h, src/converters/CKReader.h, src/converters/Group.h, src/converters/ckr_utils.cpp, src/converters/ckr_utils.h, src/converters/config.h, src/converters/writelog.cpp, src/oneD/StFlow.cpp, src/transport/Makefile.in, src/zeroD/Makefile.in, src/zeroD/flowControllers.h: merged changes from branch 2005-01-07 01:58 dggoodwin * Cantera/src/MultiPhase.cpp: initial import 2005-01-07 01:55 dggoodwin * Cantera/: src/PureFluidPhase.cpp, src/PureFluidPhase.h, src/ThermoFactory.cpp, clib/src/ct.cpp, python/Cantera/num.py: changed class PureFluid to PureFluidPhase 2005-01-07 01:46 dggoodwin * Cantera/cxx/include/PureFluid.h: merged from branch 2005-01-07 01:43 dggoodwin * Cantera/cxx/include/PureFluid.h: initial import 2005-01-07 01:39 dggoodwin * Cantera/cxx/demos/: Makefile.install, rankine.cpp: added open rankine example 2005-01-06 15:42 dggoodwin * config.h, winconfig.h, Cantera/python/Cantera/num.py, Cantera/src/config.h: cleanup 2005-01-06 15:30 dggoodwin * Cantera/cxx/demos/flamespeed.cpp, examples/cxx/transport_example1.cpp: minor cleanup 2005-01-06 04:49 dggoodwin * ChangeLog, README.txt, Cantera/clib/src/ctmultiphase.cpp, Cantera/cxx/demos/flamespeed.cpp, Cantera/python/Cantera/__init__.py, Cantera/python/examples/flame1.py, Cantera/python/examples/flame2.py, Cantera/python/examples/npflame1.py, Cantera/python/examples/stflame1.py, Cantera/src/ChemEquil.h, Cantera/src/Makefile.in, Cantera/src/MultiPhaseEquil.cpp, Cantera/src/ct2ctml.cpp, Cantera/src/ctvector.cpp, Cantera/src/oneD/StFlow.cpp, examples/cxx/transport_example1.cpp, ext/tpx/Sub.cpp: trunk changes merged into branch 2005-01-06 04:32 dggoodwin * test_problems/silane_equil/output_blessed.txt: updated blessed output due to format change 2005-01-06 03:59 dggoodwin * Cantera/python/Cantera/: Mixture.py, mixture.py: re-added 2005-01-06 03:58 dggoodwin * Cantera/python/Cantera/: Mixture.py, __init__.py, num.py, solve.py, units.py, OneD/__init__.py: merged trunk 2005-01-06 03:09 dggoodwin * Cantera/src/ctvector.cpp: fixed memory leak in operator= 2005-01-06 03:08 dggoodwin * Cantera/src/oneD/StFlow.cpp: fixed memory leak in showSolution 2005-01-05 13:04 dggoodwin * README.txt, config.h, Cantera/clib/src/ctmultiphase.cpp, Cantera/python/Cantera/__init__.py, Cantera/python/Cantera/solve.py, Cantera/python/Cantera/units.py, Cantera/python/Cantera/OneD/__init__.py, Cantera/python/examples/flame1.py, Cantera/python/examples/flame2.py, Cantera/python/examples/npflame1.py, Cantera/python/examples/stflame1.py, Cantera/src/ChemEquil.h, Cantera/src/Makefile.in, Cantera/src/MultiPhase.h, Cantera/src/MultiPhaseEquil.cpp, Cantera/src/config.h, Cantera/src/ct2ctml.cpp, examples/cxx/transport_example1.cpp: minor cleanup 2005-01-05 04:36 dggoodwin * INSTALLING, README, README.txt: removed unneeded files 2005-01-04 17:28 dggoodwin * ext/tpx/Sub.cpp: fixed problem with starting guess for T in Tsat that caused an exception with T > Tcrit on entry 2005-01-04 17:04 hkmoffa * win32/vc7/cvode/.cvsignore: Added a directory name 2005-01-04 17:03 hkmoffa * win32/vc7/.cvsignore: added a file name 2005-01-04 17:01 hkmoffa * win32/vc7/: transport/.cvsignore, oneD/.cvsignore: Added a directory 2005-01-04 17:00 hkmoffa * win32/vc7/SetupCantera/.cvsignore: Adding the .cvsignore file 2005-01-04 16:58 hkmoffa * win32/vc7/clib/: .cvsignore, clib.vcproj: Changed the library paths in the Debug and Release versions. 2005-01-04 16:54 hkmoffa * win32/vc7/ctmatlab/: .cvsignore, runmlab.cmd: changed forward slashes into backslashes. 2005-01-04 16:46 hkmoffa * win32/vc7/ctpython/: .cvsignore, ctpython.vcproj, runpython.cmd: changed runpython.cmd to use backslashes. 2005-01-04 14:28 hkmoffa * win32/vc7/SetupCantera/SetupCantera.vdproj: Changed LF's to CR-LF's in the entire file. mcvc++ was having trouble reading the file with just LF's. 2005-01-04 14:23 hkmoffa * win32/vc7/SetupCantera/SetupCantera.vdproj: Changed LF's into CR-LF's in this file. This was causing msvc++ not to be able to load the file, at least for me. 2005-01-04 12:32 hkmoffa * Cantera/src/transport/Makefile.in: New Makefile Format: Installs .h files and libs at the same time. 2005-01-04 12:30 hkmoffa * Cantera/src/zeroD/Makefile.in: New Makefile format: installs .h files and libs at the same time. 2005-01-03 15:40 hkmoffa * Cantera/python/Cantera/__init__.py: Took out the reference to ctdata. ATM, this causes all python jobs to fail. 2005-01-03 15:12 hkmoffa * Cantera/src/ct2ctml.cpp: ifdeffed out a static function that was not used. 2004-12-18 07:16 dggoodwin * Cantera/src/converters/: CKParser.cpp, CKReader.h, config.h: minor cleanup 2004-12-15 22:56 dggoodwin * Cantera/src/MultiPhase.cpp: initial import 2004-12-13 10:38 dggoodwin * win32/vc7/demos/: CanteraDemos.sln, ReadMe.txt, demo.vcproj: initial import 2004-12-13 06:58 dggoodwin * tools/bin/cvs2cl.pl: updated version 2004-12-13 06:42 dggoodwin * configure, Cantera/src/MultiPhase.h, config/configure, config/configure.in: misc cleanup 2004-12-13 06:36 dggoodwin * Makefile.in: added test export-win 2004-12-10 11:36 dggoodwin * Cantera/python/Cantera/OneD/: BurnerDiffFlame.py, BurnerFlame.py, CounterFlame.py, StagnationFlow.py, onedim.py: modified python files to use either numarray or Numeric 2004-12-10 11:32 dggoodwin * Cantera/python/: Cantera/Func.py, Cantera/Kinetics.py, Cantera/Mixture.py, Cantera/Phase.py, Cantera/Reactor.py, Cantera/SurfacePhase.py, Cantera/ThermoPhase.py, Cantera/Transport.py, Cantera/excel.py, Cantera/schem.py, Cantera/solve.py, Cantera/stoich.py, Cantera/tecplot.py, examples/isentropic.py: modified python files to use either numarray or Numeric 2004-12-09 14:10 dggoodwin * Cantera/src/: MultiPhase.h, MultiPhaseEquil.cpp, MultiPhaseEquil.h: fixed convergence problem in MultiPhaseEquil 2004-12-02 08:48 dggoodwin * data/inputs/: graphite.cti, silicon.cti, silicon_carbide.cti: initial import 2004-12-01 15:01 dggoodwin * config.h.in, Cantera/clib/src/Makefile.in, Cantera/clib/src/ctmultiphase.cpp, Cantera/clib/src/ctmultiphase.h, Cantera/cxx/include/equilibrium.h, Cantera/python/Cantera/Mixture.py, Cantera/python/src/ctmultiphase_methods.cpp, Cantera/python/src/methods.h, Cantera/python/src/pycantera.cpp, Cantera/src/DenseMatrix.cpp, Cantera/src/Makefile.in, Cantera/src/phasereport.cpp: support for multiphase equilibrium 2004-12-01 14:57 dggoodwin * Cantera/src/: MultiPhaseEquil.h, MultiPhaseEquil.cpp: support for multiphase equilibrium 2004-12-01 14:56 dggoodwin * Cantera/src/MultiPhase.h: multiphase mixtures 2004-11-23 19:08 dggoodwin * Cantera/src/importCTML.cpp: changed buildSolutionFromXML to use get_XML_NameID instead of get_XML_Node 2004-11-15 14:07 hkmoffa * win32/vc7/ck2cti/ck2cti.vcproj: use debug libraries on debug version. 2004-11-15 14:05 hkmoffa * win32/vc7/diamondSurf/diamondSurf.vcproj: ignored msvct default library 2004-11-15 14:03 hkmoffa * win32/vc7/cantera/cantera.vcproj: Dos format 2004-11-15 13:41 hkmoffa * win32/vc7/clib/clib.vcproj: For the debug dll, you have to compile with debug libraries. 2004-11-15 12:52 hkmoffa * Cantera/clib/src/ct.cpp: Added a static_cast. 2004-11-15 12:51 hkmoffa * Cantera/clib/src/ct.cpp: Added a return statement. 2004-11-14 19:17 dggoodwin * Cantera/cxx/demos/flamespeed.cpp: initial import 2004-11-14 18:33 dggoodwin * Makefile.in, configure, Cantera/cxx/include/equilibrium.h, Cantera/fortran/src/Makefile.in, Cantera/python/ctml_writer.py, Cantera/src/ChemEquil.cpp, Cantera/src/ChemEquil.h, Cantera/src/ct_defs.h, Cantera/src/ctvector.cpp, Cantera/src/ctvector.h, config/configure, config/configure.in, ext/tpx/RedlichKwong.cpp: changed f90 mod file handling in Makefiles 2004-11-12 15:37 dggoodwin * Cantera/src/oneD/: Domain1D.h, Sim1D.cpp, Sim1D.h, StFlow.cpp, StFlow.h, boundaries1D.cpp: changes by Karl Meredith to implement adiabatic, freely-propagating flames 2004-11-02 02:23 dggoodwin * Cantera/src/: ImplicitChem.h, ImplicitChem.cpp: re-added file 2004-10-19 03:47 dggoodwin * Cantera/src/xml.h: added 'const' to 'write' 2004-10-19 03:44 dggoodwin * Cantera/src/xml.cpp: changed exception XML_NoChild to print offending XML_Node. 2004-10-19 03:43 dggoodwin * Cantera/src/transport/TransportFactory.cpp: changed reading of transport data from XML tree so that species with no transport data (e.g. surface species) do not cause an exception to be thrown because the have no 'transport' child element. 2004-10-18 12:52 hkmoffa * bin/install_tsc.in: Check for destination directory existing. 2004-10-16 04:09 dggoodwin * win32/vc7/SetupCantera/SetupCantera.vdproj: initial import 2004-10-16 03:12 dggoodwin * Cantera/python/winsetup.py: initial import 2004-10-15 16:10 dggoodwin * Cantera/: src/ct2ctml.cpp, src/global.h, src/logger.h, src/misc.cpp, matlab/cantera/private/ctmethods.cpp, matlab/cantera/private/mllogger.h, python/src/pycantera.cpp, python/src/pylogger.h, python/src/pyutils.h, python/src/writelog.cpp: added environment-specific classes to write log files 2004-10-13 21:24 dggoodwin * tools/src/: package4mac.in, postflight: Mac install script 2004-10-12 06:56 dggoodwin * win32/vc7/: cantera.sln, cantera_examples.sln, cantera/cantera.vcproj, ck2cti/ck2cti.vcproj, clib/clib.vcproj, converters/converters.vcproj, cti2ctml/cti2ctml.vcproj, cvode/cvode.vcproj, cxxutils/cxxutils.vcproj, f2c_blas/f2c_blas.vcproj, f2c_lapack/f2c_lapack.vcproj, f2c_libs/f2c_libs.vcproj, f2c_math/f2c_math.vcproj, f2c_recipes/f2c_recipes.vcproj, oneD/oneD.vcproj, silane_equil/silane_equil.vcproj, tpx/tpx.vcproj, transport/transport.vcproj, zeroD/zeroD.vcproj: added ctpython, changed c libs to multithreaded DLL, changed properties for release version 2004-10-12 06:55 dggoodwin * win32/vc7/ctpython/: ctpython.vcproj, runpython.cmd: files to build the Python interface within Visual Studio 2004-10-11 07:36 dggoodwin * win32/vc7/: cantera.sln, cantera/cantera.vcproj, cvode/cvode.vcproj, f2c_arithchk/f2c_arithchk.vcproj, f2c_blas/f2c_blas.vcproj, f2c_lapack/f2c_lapack.vcproj, f2c_libs/f2c_libs.vcproj, f2c_math/f2c_math.vcproj, f2c_recipes/f2c_recipes.vcproj, tpx/tpx.vcproj, transport/transport.vcproj: bug fixes 2004-10-10 13:46 dggoodwin * config.h.in, Cantera/src/DenseMatrix.cpp, Cantera/src/GasKinetics.cpp, Cantera/src/ctvector.cpp, Cantera/src/ctvector.h, Cantera/src/converters/CKParser.cpp, Cantera/src/converters/writelog.cpp, Cantera/src/oneD/StFlow.cpp, Cantera/src/transport/TransportFactory.cpp, Cantera/src/transport/TransportParams.h, ext/f2c_libs/f2c.h, ext/f2c_recipes/simplx.c: changes to make type integer compatible with f2c 2004-10-10 05:11 dggoodwin * Cantera/src/importCTML.cpp: moved arrays used to check for dup rxns into a class to avoid problems with initialization on some systems (FreeBSD) 2004-10-10 05:09 dggoodwin * Cantera/src/: global.h, misc.cpp: added sleep function 2004-10-10 05:09 dggoodwin * Cantera/src/ct2ctml.cpp: added sleep before call to python 2004-10-09 11:58 dggoodwin * ext/tpx/RedlichKwong.h: removed use of pow 2004-10-09 11:55 dggoodwin * ext/tpx/RedlichKwong.cpp: eliminated use of pow 2004-10-09 08:45 dggoodwin * ext/tpx/: RedlichKwong.cpp, RedlichKwong.h: initial import 2004-10-09 08:27 dggoodwin * tools/bin/cvs2cl.pl: initial import 2004-10-09 08:21 dggoodwin * Cantera/python/Cantera/Transport.py: added method molarFluxes 2004-10-09 08:19 dggoodwin * Cantera/python/Cantera/SurfacePhase.py: minor cleanup 2004-10-09 08:18 dggoodwin * Cantera/python/src/pyutils.h: corrected problem with truncation of error messages 2004-10-09 08:17 dggoodwin * Cantera/python/src/cttransport_methods.cpp: added py_getMolarFluxes 2004-10-09 08:15 dggoodwin * Cantera/python/Cantera/ThermoPhase.py: added import statement 2004-10-09 08:13 dggoodwin * Cantera/matlab/: Makefile.in, cantera/examples/rankine.m, cantera/private/ctfunctions.cpp, cantera/private/ctmatutils.h, cantera/private/phasemethods.cpp, cantera/private/thermomethods.cpp: added support for exceptions from tpx 2004-10-09 08:07 dggoodwin * Cantera/src/: Phase.h, Phase.cpp: added const in restoreState 2004-10-09 08:05 dggoodwin * Cantera/src/transport/TransportFactory.cpp: minor cleanup 2004-10-09 08:03 dggoodwin * Cantera/src/transport/: MultiTransport.h, MultiTransport.cpp: added methods getMolarFluxes and getMassFluxes 2004-10-09 08:00 dggoodwin * Cantera/src/: importCTML.cpp, xml.cpp: cleanup 2004-10-09 07:58 dggoodwin * Cantera/src/misc.cpp: moved exception constructor definitions here from ctexceptions.h 2004-10-09 07:57 dggoodwin * Cantera/src/ctexceptions.h: moved constructor definitions to misc.cpp 2004-10-09 07:55 dggoodwin * Cantera/src/funcs.cpp: added include file 2004-10-09 07:48 dggoodwin * Cantera/src/PureFluidPhase.cpp: moved most method definitions here from header file. 2004-10-09 07:47 dggoodwin * Cantera/src/PureFluidPhase.h: moved most method definitions to PureFluidPhase.cpp 2004-10-08 10:09 hkmoffa * Cantera/src/transport/TransportParams.h: Added an include for XML_Writer.h 2004-10-08 10:09 hkmoffa * Cantera/src/transport/MMCollisionInt.cpp: Added an XML_writer include 2004-10-05 10:56 dggoodwin * ext/tpx/Sub.h: added exceptions for error handling 2004-10-05 10:55 dggoodwin * ext/tpx/Sub.cpp: Added exceptions to handle errors. 2004-10-05 09:20 hkmoffa * config/configure.in: Added rule to make bin/install_tsc 2004-10-05 09:15 hkmoffa * bin/: .cvsignore, install_tsc.in: Utility script to install a header file, only if the modified date has changed. 2004-10-03 01:30 dggoodwin * Cantera/src/XML_Writer.h: initial import 2004-10-03 01:28 dggoodwin * Cantera/src/transport/TransportBase.h: added method getMassFluxes 2004-10-03 01:24 dggoodwin * Cantera/src/xml.h: removed class XML_Writer 2004-10-03 00:41 dggoodwin * Cantera/src/xml.cpp: added line numbers to exception error messages 2004-10-02 00:25 dggoodwin * Cantera/src/ct2ctml.cpp: minor cleanup 2004-10-01 12:38 hkmoffa * Cantera/matlab/.cvsignore: Added a file. 2004-10-01 12:37 hkmoffa * Cantera/matlab/setup_winmatlab.py: Removing a file that gets automatically created during the configuration process. 2004-10-01 12:34 hkmoffa * Makefile.in: Took out automatic deletion of static libraries at the beginning of every make operation. 2004-10-01 12:31 hkmoffa * config/configure.in: Added more handling of the PYTHON_CMD variable. 2004-10-01 12:30 hkmoffa * configure: Uncommented out PYTHON_CMD. It's now set to "default", if unspecified. Then, this default is treated in config/configure with special code. 2004-09-24 13:35 hkmoffa * win32/vc7/configure.vc++: Added the USE_DLL environmental variable. 2004-09-24 13:16 hkmoffa * Makefile.in, configure: Added USE_DLL variable and its controls. Takes care of a bug that krept in for compiles with MSVC++v.6.0 while trying to stand up MSVC++v7.0 compiles. 2004-09-24 13:15 hkmoffa * config/configure.in: Added USE_CLIB_DLL evaluation. 2004-09-24 13:14 hkmoffa * Cantera/python/Makefile.in: took care of problem with clib.dll for MSVC6.0 2004-09-24 10:24 hkmoffa * win32/README: Added another step, involving setting up paths and environmental variables. 2004-09-20 03:18 dggoodwin * Cantera/src/: EdgeKinetics.cpp, EdgeKinetics.h, ReactionData.h, importCTML.cpp, converters/ck2ct.cpp: added ability to specify beta for charge transfer reactions 2004-09-16 15:08 hkmoffa * Makefile.in: Added dll install 2004-09-16 15:07 hkmoffa * win32/README: Added another step. 2004-09-16 14:43 hkmoffa * test_problems/python/runtest: Fixed an error in the default specifation of python executable 2004-09-16 10:57 hkmoffa * tools/src/ck2cti.cpp: Added an id string. 2004-09-16 10:54 hkmoffa * win32/vc7/cantera.sln: Added a few more dependencies to sln file. 2004-09-16 10:54 hkmoffa * win32/vc7/ck2cti/ck2cti.vcproj: Fixed an error. 2004-09-16 10:53 hkmoffa * win32/vc7/cvode/cvode.vcproj: Changed an absolute pathname into a relative pathname. 2004-09-16 10:52 hkmoffa * test_problems/: diamondSurf/Makefile.in, silane_equil/Makefile.in, surfkin/Makefile.in: turned off automatic compilation during make test for windows machines. 2004-09-16 10:51 hkmoffa * test_problems/cxx_ex/: .cvsignore, gri30.xml, kin1_blessed_win.csv, kin2_blessed_win.csv, runtest, silane.xml: Made the blessed files machine dependent for this test. 2004-09-16 10:30 hkmoffa * test_problems/ck2cti_test/gri30_tran.dat: Changed a LJ value to prevent roundoff error from leading to an error failure 2004-09-16 10:13 hkmoffa * test_problems/ck2cti_test/: .cvsignore, runtest.in: Added a step to change 3 exponent expressions into 2 exponenet expressions. 2004-09-16 10:06 hkmoffa * Cantera/src/converters/ck2ct.cpp: Took out a print statement that was causing a test to fail. 2004-09-02 13:57 hkmoffa * win32/vc7/configure.vc++: Took out HKM comments 2004-09-02 13:48 hkmoffa * win32/README: Added a cd command. 2004-08-28 09:13 dggoodwin * tools/bin/erase: script to remove a file from the repository 2004-08-28 09:12 dggoodwin * Cantera/src/: ArrayViewer.h, DenseMatrix.cpp, EdgeKinetics.h, GRI_30_Kinetics.h, GasKineticsWriter.h, InterfaceKinetics.h, PureFluidPhase.h, ReactionStoichMgr.h, SimpleThermo.h, SpeciesThermoMgr.h, StoichManager.h, StoichSubstance.h, ThermoPhase.h, newton_utils.cpp, converters/CKParser.cpp, converters/Group.h, converters/Reaction.h, converters/atomicWeightDB.cpp, converters/config.h, converters/filter.cpp, converters/thermoFunctions.cpp, oneD/Jac1D.h, oneD/Newton1D.h, oneD/Solid1D.cpp, oneD/newton_utils.cpp, zeroD/Reactor.cpp, zeroD/Reservoir.h: cleanup 2004-08-27 13:37 hkmoffa * .cvsignore: Added 2 files. 2004-08-27 13:35 hkmoffa * bin/.cvsignore: added some windows tmp files 2004-08-27 13:29 hkmoffa * win32/README: Added detailed instructions for vc7 2004-08-27 13:26 hkmoffa * win32/vc7/: .cvsignore, cantera.sln, cantera_examples.sln, csvdiff/.cvsignore, csvdiff/csvdiff.vcproj, cxx_examples/.cvsignore, cxx_examples/cxx_examples.vcproj: Second generation of vc7 port. 2004-08-27 13:21 hkmoffa * test_problems/python/runtest: Currently, linux and MSVC are producing the same results on this test problem. I changed runtest to substitute the right machine dependent blessed file. 2004-08-27 13:08 hkmoffa * tools/testtools/: csvdiff.cpp, mdp_allo.cpp, mdp_allo.h: Changes to support MSVC 2004-08-27 13:03 hkmoffa * tools/testtools/csvdiff.cpp: Added a getopt() capability for WINMSC 2004-08-27 09:45 hkmoffa * config/configure.in: Added a default 0 to BUILD_PARTICLES value 2004-08-27 08:42 hkmoffa * win32/vc7/configure.vc++: Initial commit 2004-08-10 13:39 hkmoffa * test_problems/python/: .cvsignore, flame1_blessed_linux.csv, runtest: Added a machine dependent blessed file capability 2004-08-10 11:18 hkmoffa * config/configure.in: Added support for the new python_win_prefix variable. -> This needs to be backslashed. -> all other variables on all other platforms (and on OS_IS_WIN) need to be forward slashed. 2004-08-10 11:16 hkmoffa * Cantera/python/Makefile.in: added python_win_prefix variable. On windows this needs to be a backslash, unlike all the other variables which need to be regular slashes. Therefore, I had to create a new variable to do this. 2004-08-10 10:28 hkmoffa * config/configure.in: Several changes: CYGWIN is now undefined, not just 0 WINMSVC is now undefined, not just 0 OS_IS_CYGWIN is now 0 when OS_IS_WIN = 1 2004-08-09 18:31 hkmoffa * .cvsignore: added a dir. 2004-08-09 18:29 hkmoffa * test_problems/python/runtest: Tried to add a default $1, so that it runs like all the rest. 2004-08-09 18:15 hkmoffa * Cantera/python/.cvsignore: added a file. 2004-08-09 18:12 hkmoffa * tools/src/cti2ctml.cpp: MSVC warning message 2004-08-09 18:11 hkmoffa * examples/cxx/: example_utils.h, examples.cpp: MSVC experienced an error on this code. fixed it. 2004-08-09 18:09 hkmoffa * config/: .cvsignore, configure.in: arith.h needs to be created for win 2004-08-09 18:08 hkmoffa * Cantera/python/Makefile.in: clib.dll needs to be copied by hand 2004-08-09 18:06 hkmoffa * test_problems/diamondSurf/: .cvsignore, runtest: MSVC differences no longer matter. 2004-08-09 18:01 hkmoffa * Cantera/.cvsignore: Added a file. 2004-08-09 18:00 hkmoffa * bin/get_arch: Added cygwin support 2004-08-09 17:23 hkmoffa * ext/f2c_libs/: .cvsignore, arith.hwin32: added a file. 2004-08-09 17:22 hkmoffa * ext/f2c_libs/f2c.h: Added windows specific definition block 2004-08-09 17:20 hkmoffa * ext/f2c_lapack/dlamch.c: Added a stdio.h reference. 2004-08-09 17:18 hkmoffa * win32/vc7/: .cvsignore, cantera.sln, cantera/.cvsignore, cantera/cantera.vcproj, ck2cti/.cvsignore, ck2cti/ck2cti.vcproj, clib/.cvsignore, clib/clib.vcproj, converters/.cvsignore, converters/converters.vcproj, cti2ctml/.cvsignore, cti2ctml/cti2ctml.vcproj, cvode/.cvsignore, cvode/cvode.vcproj, cxxutils/.cvsignore, cxxutils/cxxutils.vcproj, diamondSurf/.cvsignore, diamondSurf/diamondSurf.vcproj, f2c_arithchk/.cvsignore, f2c_arithchk/f2c_arithchk.vcproj, f2c_blas/.cvsignore, f2c_blas/f2c_blas.vcproj, f2c_lapack/.cvsignore, f2c_lapack/f2c_lapack.vcproj, f2c_libs/.cvsignore, f2c_libs/f2c_libs.vcproj, f2c_math/.cvsignore, f2c_math/f2c_math.vcproj, f2c_recipes/.cvsignore, f2c_recipes/f2c_recipes.vcproj, oneD/.cvsignore, oneD/oneD.vcproj, pycantera/.cvsignore, pycantera/pycantera.vcproj, silane_equil/.cvsignore, silane_equil/silane_equil.vcproj, surfkin/.cvsignore, surfkin/surfkin.vcproj, tpx/.cvsignore, tpx/tpx.vcproj, transport/.cvsignore, transport/transport.vcproj, zeroD/.cvsignore, zeroD/zeroD.vcproj: First commit of vc7 project files. 2004-08-09 16:58 hkmoffa * test_problems/silane_equil/: .cvsignore, runtest: MSVS differences are now eliminated via a sed script. 2004-08-09 16:45 hkmoffa * bin/exp3to2.sh: new shell script used for test programs. 2004-08-09 15:21 hkmoffa * test_problems/surfkin/: .cvsignore, runtest: added -w option to diff, so that dos unix text file differences aren't important. 2004-08-09 15:06 hkmoffa * test_problems/diamondSurf/.cvsignore: Added pc file. 2004-08-09 14:28 hkmoffa * ext/f2c_blas/xerbla.c: added an include 2004-08-09 13:51 hkmoffa * ext/f2c_libs/signal1.h: added this file for convenience 2004-08-09 13:17 hkmoffa * ext/f2c_libs/sysdep1.h: Added this file in. It is recreated during linux makes, but vc++ makes don't create it. 2004-08-09 10:41 hkmoffa * config/configure.in: Changed cygpath -a -w to cygpath -a -m. This causes backslashes to be replaced with regular slashes. Backslashes in strings were causing a lot of problems, as they are interpreted as escape sequences. Regular slashes in c++ on the pc operate just like backslashes in all cases. 2004-08-09 10:38 hkmoffa * Cantera/src/ct2ctml.cpp: Got rid of msvc++ warning message. 2004-08-09 09:54 hkmoffa * Cantera/.cvsignore: added cads 2004-08-09 09:50 hkmoffa * test_problems/surfkin/.cvsignore: Added files 2004-08-09 08:12 hkmoffa * Cantera/python/tutorial/.cvsignore: Changed the name of a file. 2004-08-09 08:11 hkmoffa * Cantera/python/tutorial/.cvsignore: Added a file 2004-08-08 22:10 dggoodwin * Makefile.in, configure, Cantera/fortran/src/Makefile.in, Cantera/python/setup.py.in, Cantera/src/DenseMatrix.cpp, Cantera/src/DenseMatrix.h, Cantera/src/ctlapack.h, Cantera/src/ctvector.cpp, Cantera/src/ctvector.h, Cantera/src/misc.cpp, config/configure, config/configure.in, ext/math/fdump.f: improvements to the configuration process 2004-08-06 16:29 hkmoffa * win32/vc6/: cantera.dsw, all/all.dsp, blas/blas.dsp, cantera/cantera.dsp, cantera_examples/cantera_examples.dsw, ck2cti/ck2cti.dsp, ckreader/ckreader.dsp, clib/clib.dsp, converters/converters.dsp, ct/ct.dsp, ctmath/ctmath.dsp, ctsetup/ctsetup.dsp, cvode/cvode.dsp, cxxutils/cxxutils.dsp, cxxutils/cxxutils.mak, lapack/lapack.dsp, oneD/oneD.dsp, recipes/recipes.dsp, tpx/tpx.dsp, tpx/tpx.mak, transport/transport.dsp, zeroD/zeroD.dsp: Duplicating existing structure in the new module. However, it's one directory deeper. 2004-08-06 16:09 hkmoffa * test_problems/surfkin/surfdemo.cpp: Added a return statement. 2004-08-06 16:00 hkmoffa * ext/tpx/ck_gas.h: fixed a few vc++ errors. 2004-08-06 15:54 hkmoffa * Cantera/src/ct2ctml.cpp: added some more debugging stuff. 2004-08-06 15:23 hkmoffa * ext/f2c_libs/Makefile.in: Fixed an error on cygwin 2004-08-06 14:56 hkmoffa * ext/math/Makefile.in: Added the all: target. 2004-08-06 14:53 hkmoffa * config/configure.in, configure: Added support for build_with_f2c. 2004-08-06 14:52 hkmoffa * ext/: Makefile.in, blas/Makefile.in, cvode/Makefile.in, f2c_blas/Makefile.in, f2c_libs/Makefile.in, f2c_math/Makefile.in, lapack/Makefile.in, tpx/.cvsignore, tpx/Makefile.in: Fixed makefiles within the ext directory. Added support for build_with_f2c. 2004-08-06 14:50 hkmoffa * ext/recipes/Makefile.in: Added a depends rule 2004-08-06 14:31 hkmoffa * config/.cvsignore: Added a dir. 2004-08-06 14:29 hkmoffa * examples/cxx/.cvsignore: Added more files. 2004-08-06 14:05 hkmoffa * tools/templates/f90/.cvsignore: Started this file. 2004-08-06 14:03 dggoodwin * Makefile.in: fixed Fortran module install bug 2004-08-06 14:01 hkmoffa * Cantera/python/examples/.cvsignore: Added this file. 2004-08-06 14:00 hkmoffa * examples/cxx/.cvsignore: Added 3 files. 2004-08-06 13:58 hkmoffa * apps/MixMaster/: .cvsignore, Units/.cvsignore: Added *.pyc rule to .cvsignore 2004-08-06 13:56 hkmoffa * Cantera/user/.cvsignore: Added Makefile. 2004-08-06 13:55 hkmoffa * Cantera/fortran/src/Makefile.in: Changed the suffix rule format. 2004-08-06 13:51 hkmoffa * Cantera/src/: ct2ctml.cpp, misc.cpp: Added the "sleep" system command buf fix for the cygwin environment. Added debugging printouts for the DEFINE DEBUG_PATH. 2004-08-06 13:31 hkmoffa * Cantera/src/Makefile.in: Added a commented out capability to turn on DEBUG_PATHS, which is used to debug IO data issues. 2004-08-06 13:29 hkmoffa * config.h.in: Added 2 defs: CYGWIN WINMSVC to indicate environments. Used to support putting in sleep commands into ct2ctml. 2004-08-06 13:26 hkmoffa * test_problems/: cxx_ex/.cvsignore, surfkin/.cvsignore, surfkin/surfdemo.cpp: Changed required file from gri30.xml to gri30.cti. 2004-08-06 13:25 hkmoffa * test_problems/python/.cvsignore: Added a file. 2004-08-06 13:22 hkmoffa * config/configure.in: Added a check to see if the fortran 90 compiler is available. Added a few defines to config.h. This is needed to implement the fix to the directory sync problem I found on cygwin. 2004-08-06 08:45 hkmoffa * Cantera/src/Makefile.in: Fixed the format of the SUFFIX makefile command. 2004-08-05 14:32 hkmoffa * bin/get_arch: Simple shell script to return the architecture. It is to be used on test problems which produce slightly different results on different platforms. 2004-08-05 12:25 hkmoffa * ext/cvode/source/nvector.c: Added brackets. 2004-08-05 12:23 hkmoffa * ext/math/Makefile.in: Fixed the SUFFIX object 2004-08-05 12:22 hkmoffa * ext/math/mach.cpp: Added a _i1mach_ target 2004-08-05 12:16 hkmoffa * ext/f2c_blas/Makefile.in: Slight change 2004-08-05 12:15 hkmoffa * ext/f2c_math/: .cvsignore, Makefile.in, cblas.h, daux.c, ddaspk.c, dgbefa.c, dgbsl.c, dgefa.c, dgesl.c, dp1vlu.c, dpcoef.c, dpolft.c, fdump.c, gmres.h, idamax.c, j4save.c, mach.cpp, mkl_cblas.h, pcoef.c, polfit.c, pvalue.c, xercnt.c, xerhlt.c, xermsg.c, xerprn.c, xersve.c, xgetua.c: First commit of this directory 2004-08-05 10:51 hkmoffa * ext/f2c_blas/blaswrap.h: Added a file. 2004-08-05 10:49 hkmoffa * ext/f2c_blas/: .cvsignore, Makefile.in, dasum.c, daxpy.c, dcabs1.c, dcopy.c, ddot.c, dgbmv.c, dgemm.c, dgemv.c, dger.c, dnrm2.c, drot.c, drotg.c, drotm.c, drotmg.c, dsbmv.c, dscal.c, dsdot.c, dspmv.c, dspr.c, dspr2.c, dswap.c, dsymm.c, dsymv.c, dsyr.c, dsyr2.c, dsyr2k.c, dsyrk.c, dtbmv.c, dtbsv.c, dtpmv.c, dtpsv.c, dtrmm.c, dtrmv.c, dtrsm.c, dtrsv.c, dzasum.c, dznrm2.c, idamax.c, isamax.c, lsame.c, xerbla.c: First commit for this directory 2004-08-05 10:24 hkmoffa * ext/f2c_lapack/: .cvsignore, Makefile.in, blaswrap.h, dbdsqr.c, dgbrfs.c, dgbsv.c, dgbsvx.c, dgbtf2.c, dgbtrf.c, dgbtrs.c, dgebak.c, dgebal.c, dgebd2.c, dgebrd.c, dgelq2.c, dgelqf.c, dgels.c, dgelsd.c, dgelss.c, dgelsx.c, dgelsy.c, dgeqr2.c, dgeqrf.c, dgetf2.c, dgetrf.c, dgetri.c, dgetrs.c, dlabad.c, dlabrd.c, dlacpy.c, dlamch.c, dlange.c, dlapy2.c, dlarf.c, dlarfb.c, dlarfg.c, dlarft.c, dlartg.c, dlas2.c, dlascl.c, dlaset.c, dlasq1.c, dlasq2.c, dlasq3.c, dlasq4.c, dlasq5.c, dlasq6.c, dlasr.c, dlasrt.c, dlassq.c, dlasv2.c, dlaswp.c, dorg2r.c, dorgbr.c, dorgl2.c, dorglq.c, dorgqr.c, dorm2r.c, dormbr.c, dorml2.c, dormlq.c, dormqr.c, drscl.c, dtrti2.c, dtrtri.c, ieeeck.c, ilaenv.c, lsame.c: First commit of this directory 2004-08-05 10:04 dggoodwin * Cantera/fortran/src/cantera_funcs.f90, Cantera/fortran/src/fct.cpp, tools/templates/f90/demo.f90: minor changes to fortran files 2004-08-05 09:42 dggoodwin * configure, Cantera/matlab/setup_winmatlab.py, Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/oneD/StFlow.cpp, Cantera/src/oneD/StFlow.h, config/configure, config/configure.in: minor cleanup 2004-08-04 17:18 hkmoffa * ext/f2c_libs/: .cvsignore, Makefile.in, abort_.c, arithchk.c, backspac.c, c_abs.c, c_cos.c, c_div.c, c_exp.c, c_log.c, c_sin.c, c_sqrt.c, cabs.c, close.c, d_abs.c, d_acos.c, d_asin.c, d_atan.c, d_atn2.c, d_cnjg.c, d_cos.c, d_cosh.c, d_dim.c, d_exp.c, d_imag.c, d_int.c, d_lg10.c, d_log.c, d_mod.c, d_nint.c, d_prod.c, d_sign.c, d_sin.c, d_sinh.c, d_sqrt.c, d_tan.c, d_tanh.c, derf_.c, derfc_.c, dfe.c, dolio.c, dtime_.c, due.c, ef1asc_.c, ef1cmc_.c, endfile.c, erf_.c, erfc_.c, err.c, etime_.c, exit_.c, f2c.h, f2c.h0, f2ch.add, f77_aloc.c, f77vers.c, fio.h, fmt.c, fmt.h, fmtlib.c, fp.h, ftell64_.c, ftell_.c, getarg_.c, getenv_.c, h_abs.c, h_dim.c, h_dnnt.c, h_indx.c, h_len.c, h_mod.c, h_nint.c, h_sign.c, hl_ge.c, hl_gt.c, hl_le.c, hl_lt.c, i77vers.c, i_abs.c, i_dim.c, i_dnnt.c, i_indx.c, i_len.c, i_mod.c, i_nint.c, i_sign.c, iargc_.c, iio.c, ilnw.c, inquire.c, l_ge.c, l_gt.c, l_le.c, l_lt.c, lbitbits.c, lbitshft.c, lio.h, lread.c, lwrite.c, main.c, open.c, pow_ci.c, pow_dd.c, pow_di.c, pow_hh.c, pow_ii.c, pow_qq.c, pow_ri.c, pow_zi.c, pow_zz.c, qbitbits.c, qbitshft.c, r_abs.c, r_acos.c, r_asin.c, r_atan.c, r_atn2.c, r_cnjg.c, r_cos.c, r_cosh.c, r_dim.c, r_exp.c, r_imag.c, r_int.c, r_lg10.c, r_log.c, r_mod.c, r_nint.c, r_sign.c, r_sin.c, r_sinh.c, r_sqrt.c, r_tan.c, r_tanh.c, rawio.h, rdfmt.c, rewind.c, rsfe.c, rsli.c, rsne.c, s_cat.c, s_cmp.c, s_copy.c, s_paus.c, s_rnge.c, s_stop.c, sfe.c, sig_die.c, signal1.h0, signal_.c, signbit.c, sue.c, sysdep1.h0, system_.c, typesize.c, uio.c, uninit.c, util.c, wref.c, wrtfmt.c, wsfe.c, wsle.c, wsne.c, xwsne.c, z_abs.c, z_cos.c, z_div.c, z_exp.c, z_log.c, z_sin.c, z_sqrt.c: First commit of f2c library directory 2004-08-04 16:57 hkmoffa * ext/f2c_recipes/: .cvsignore, Makefile.in, simp1.c, simp2.c, simp3.c, simplx.c, splie2.c, splin2.c, spline.c, splint.c: Initial commit of this directory. -> f2c option 2004-08-04 04:21 dggoodwin * Cantera/fortran/src/: cantera_xml.f90, fctxml_interface.f90, genf.py: XML module 2004-08-03 13:49 hkmoffa * bin/rm_cvsignore: Added runtest to the list of files not to whack. 2004-08-03 13:21 hkmoffa * test_problems/Makefile.in: Added endif's. This was causing an error exit. 2004-08-03 09:32 dggoodwin * test_problems/silane_equil/output_blessed.txt: updated blessed file due to change in warning output format 2004-08-03 09:15 dggoodwin * test_problems/: Makefile.in, python/.cvsignore, python/Makefile.in, python/diamond_blessed.csv, python/flame1_blessed.csv, python/runtest: added Python test problems 2004-08-03 08:18 dggoodwin * Cantera/python/Cantera/OneD/BurnerDiffFlame.py: burner-stabilized flame with reservoir outlet condition 2004-08-03 04:16 dggoodwin * Makefile.in, configure, Cantera/cxx/src/writelog.cpp, Cantera/matlab/cantera/ck2cti.m, Cantera/matlab/cantera/private/write.cpp, Cantera/python/src/writelog.cpp, Cantera/src/global.h, config/configure, config/configure.in: cleanup 2004-08-03 03:36 dggoodwin * Cantera/src/: IdealGasThermo.cpp, ImplicitChem.cpp, Makefile.in, SolidCompound.cpp, importSurfChem.cpp, surfKinetics.cpp: cleanup 2004-08-03 02:18 dggoodwin * win32/README: Initial revision 2004-08-03 02:18 dggoodwin * win32/README: initial import 2004-08-03 02:09 dggoodwin * Cantera/src/: Constituents.cpp, DenseMatrix.h, EOS_TPX.h, EdgePhase.h, GRI30.h, IdealGasThermo.h, InterfaceKinetics.cpp, Makefile.in, NasaThermo.h, ReactionData.h, Resid.h, RxnRates.h, ShomateThermo.h, SimpleThermo.h, SolidCompound.h, SpeciesThermo.h, SpeciesThermoFactory.cpp, SpeciesThermoMgr.h, StoichManager.h, exceptions.h, fitPoly.h, pureSubstances.h, surfKinetics.h, transportModels.h, xml.cpp: removed unused files 2004-08-01 14:33 dggoodwin * Cantera/fortran/src/fctxml.cpp: initial import 2004-08-01 09:43 dggoodwin * Cantera/matlab/cantera/@ThermoPhase/speciesIndex.m: added support for cell arrays of species names 2004-08-01 09:43 dggoodwin * Cantera/matlab/cantera/@ThermoPhase/elementIndex.m: added support for cell arrays of element names 2004-07-30 05:26 dggoodwin * Cantera/matlab/cantera/@ThermoPhase/elementName.m: fixed bug 2004-07-29 15:31 dggoodwin * Cantera/src/: RateCoeffMgr.h, RxnRates.h, reaction_defs.h, oneD/boundaries1D.cpp, zeroD/ReactorNet.cpp: added ArrheniusSum class 2004-07-29 15:22 dggoodwin * Cantera/python/src/: ctreactor_methods.cpp, methods.h: removed time() methods for class Reactor and added them to class ReactorNet 2004-07-29 15:21 dggoodwin * Cantera/python/Cantera/Reactor.py: removed method Reactor.time(), and added ReactorNet.time() 2004-07-29 15:14 hkmoffa * test_problems/: Makefile.in, ck2cti_test/Makefile.in, cxx_ex/Makefile.in, cxx_ex/gri30.xml, diamondSurf/Makefile.in, silane_equil/.cvsignore, silane_equil/Makefile.in, silane_equil/silane_equil.cpp, surfkin/Makefile.in: Added depends target to makefiles 2004-07-29 14:43 hkmoffa * test_problems/diamondSurf/: .cvsignore, Makefile.in: Added a depends target 2004-07-28 16:44 hkmoffa * config/configure.in: Added support for ck2cti_test 2004-07-28 16:40 hkmoffa * test_problems/ck2cti_test/: .cvsignore, Makefile.in, gri30.inp, gri30_tran.dat, gri30a_blessed.cti, runtest.in: Adding another test to cover ck parser 2004-07-28 16:36 hkmoffa * test_problems/surfkin/: .cvsignore, Makefile.in: Added a depends capability 2004-07-26 16:12 dggoodwin * Cantera/python/src/methods.h: removed unused bndry functions 2004-07-26 08:58 hkmoffa * Cantera/src/: NasaThermo.h, ShomateThermo.h: Removed the at() function for vectors. gcc v2.95 does not support this function. 2004-07-21 13:41 hkmoffa * Cantera/src/: ThermoFactory.h, misc.cpp: Took the deletion of a static pointer out of destructor. 2004-07-16 17:18 hkmoffa * Cantera/src/: ConstDensityThermo.h, NasaPoly1.h, NasaThermo.h, PolyThermoMgr.h, ShomatePoly.h, ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h, SpeciesThermoMgr.h, StoichSubstance.cpp, StoichSubstance.h, ThermoPhase.h: Added "getParameter" routines to most of the species and phase thermo objects. Fixed a bug in NasaThermo::update_one() and ShomateThermo::update_one() that occurred because m_low_map and m_high_map contained bad information. They were maps to fixed pointers, but the location of the objects that they referred to changed during vector resizing operations. 2004-07-12 07:58 hkmoffa * Cantera/clib/src/: ct.cpp, ctonedim.cpp: static_cast to eliminate warnings from msvc. 2004-07-12 07:57 hkmoffa * Cantera/clib/src/Storage.cpp: Static casts to eliminates warnings from msvc 2004-07-12 07:57 hkmoffa * Cantera/clib/src/Cabinet.h: Static_casts to eliminate warnings from msvc. 2004-07-08 13:32 hkmoffa * Cantera/src/StoichSubstance.cpp: Fixed an error that was making the diamond test problem fail. 2004-07-08 13:32 hkmoffa * test_problems/diamondSurf/diamond_blessed.xml: Updated file so test would pass 2004-07-08 13:14 hkmoffa * test_problems/silane_equil/output_blessed.txt: Updated blessed file. 2004-07-08 11:14 hkmoffa * Cantera/src/: InterfaceKinetics.cpp, InterfaceKinetics.h: Added more comments. -> only formatting. 2004-07-08 11:12 hkmoffa * Cantera/src/Group.cpp: only formatting. 2004-07-08 11:11 hkmoffa * Cantera/src/units.h: Fixed an error that I recently introduced in using size_types. 2004-07-08 11:10 hkmoffa * Cantera/src/ctml.cpp: Fixed errors that I recently introduced in using size_types. 2004-07-08 11:09 hkmoffa * Cantera/src/misc.cpp: Fixed an error that I recently introduced in using size_types 2004-07-08 11:07 hkmoffa * Cantera/src/stringUtils.cpp: Fixed an error that I recently introduced in using size_types. 2004-07-08 11:03 hkmoffa * Cantera/src/GasKinetics.h: Added more initializations 2004-07-08 09:08 hkmoffa * Cantera/src/misc.cpp: Fixed an error that I introduced. Must always check string::size_type against string::npos. 2004-07-02 10:34 hkmoffa * Cantera/src/converters/CKParser.cpp: Eliminated warnings due to signed and unsigned comparisons. 2004-07-02 10:28 hkmoffa * Cantera/src/converters/CKReader.cpp: static_cast to eliminate VC++ warnings. 2004-07-02 10:27 hkmoffa * Cantera/src/converters/CKParser.cpp: static_casts to eliminate VC++ warnings. 2004-07-02 10:25 hkmoffa * Cantera/src/converters/ck2ct.cpp: fixed file names for include files. static_cast to eliminate VC++ warnigns. 2004-07-02 10:24 hkmoffa * Cantera/src/converters/ckr_utils.cpp: static_cast to eliminate VC++ warnings. 2004-07-02 10:23 hkmoffa * Cantera/src/converters/ckr_defs.h: Corrected file locations for include files. 2004-07-02 10:21 hkmoffa * Cantera/src/converters/: writelog.cpp, filter.cpp, Reaction.cpp: static_cast to eliminate VC++ warnings. 2004-07-02 10:20 hkmoffa * Cantera/src/converters/ck2ctml.cpp: Corrected file locations of include files. static_cast to eliminate VC++ warnings. 2004-07-02 10:19 hkmoffa * Cantera/src/converters/ck2ctml.h: Corrected file locations of include files. 2004-07-02 09:48 hkmoffa * Cantera/src/converters/: CKParser.cpp, CKParser.h: Moved CK_SyntaxError definition to the .h file. It's used in more than one .cpp file. 2004-07-02 09:47 hkmoffa * Cantera/src/converters/filter.cpp: split long lines. 2004-07-02 09:14 hkmoffa * Cantera/src/zeroD/FlowDevice.cpp: Corrected file location of include file. 2004-07-02 09:13 hkmoffa * Cantera/src/zeroD/ReactorBase.cpp: static_cast to eliminate VC++ warnings. 2004-07-02 09:12 hkmoffa * Cantera/src/zeroD/Wall.cpp: Correct file location of include file. 2004-07-02 09:05 hkmoffa * Cantera/src/transport/TransportFactory.cpp: Corrected file locations of include files. static_cast to eliminate VC++ warnings. 2004-07-02 09:04 hkmoffa * Cantera/src/transport/MultiTransport.cpp: static_cast to eliminate VC++ warnings. 2004-07-02 09:02 hkmoffa * Cantera/src/transport/MMCollisionInt.cpp: commented out a variable that wasn't used. 2004-07-02 09:01 hkmoffa * Cantera/src/transport/: L_matrix.h, MixTransport.cpp: Corrected the file location of include files. 2004-07-02 08:59 hkmoffa * Cantera/src/transport/: TransportParams.h, SolidTransport.cpp: Corrected the file locations of include files. 2004-07-02 08:29 hkmoffa * Cantera/src/oneD/MultiNewton.cpp: static_cast to eliminate VC++ warnings. 2004-07-02 08:27 hkmoffa * Cantera/src/oneD/OneDim.cpp: Static_cast to eliminate VC++ warnings. 2004-07-02 08:26 hkmoffa * Cantera/src/oneD/: Sim1D.cpp, StFlow.cpp: static_cast to eliminate VC++ warnings. 2004-07-02 08:23 hkmoffa * Cantera/src/oneD/refine.cpp: Static_cast to eliminate VC++ warnings. 2004-07-02 08:21 hkmoffa * Cantera/src/oneD/refine.h: static_cast to eliminate warning in VC++ 2004-07-02 08:20 hkmoffa * Cantera/src/oneD/Solid1D.cpp: Fixed one Error in file not part of the distribution 2004-07-02 08:19 hkmoffa * Cantera/src/oneD/Solid1D.h: Fixed one error in a file not yet part of distribution. 2004-07-02 07:58 hkmoffa * Cantera/src/DASPK.cpp: Fixed an error in a calling routine. Fixed an error involving passing a pointer through an integer array, when the length of the pointer is longer than the length of a single integer. Basically, you have to cast first to the longer variable, before assigning. 2004-07-02 07:48 hkmoffa * Cantera/src/SpeciesThermoFactory.cpp: static_cast to eliminate VC++ warnings. 2004-07-02 07:47 hkmoffa * Cantera/src/misc.cpp: static_cast and size_type to eliminate VC++ warnings. 2004-07-02 07:46 hkmoffa * Cantera/src/importCTML.cpp: static_cast to eliminate VC++ warning messages. 2004-07-02 07:45 hkmoffa * Cantera/src/ImplicitSurfChem.cpp: static_cast to eliminate VC++ warning message. 2004-07-02 07:44 hkmoffa * Cantera/src/ImplicitChem.h: Changed the name of a routine, to get it to compile. However, I don't think this is part of the distribution. 2004-07-02 07:43 hkmoffa * Cantera/src/surfKinetics.h: changed the name of an include file. however, I think this is no longer part of the distribution. 2004-07-02 07:42 hkmoffa * Cantera/src/ReactionPath.cpp: static_cast to eliminate warning messages. 2004-07-02 07:41 hkmoffa * Cantera/src/ctml.cpp: static cast and size_type to eliminate VC++ warning messages. 2004-07-02 07:39 hkmoffa * Cantera/src/: stringUtils.cpp, ReactionPath.h: static_cast to eliminate VC++ warning messages. 2004-07-01 16:58 hkmoffa * Cantera/src/GasKinetics.cpp: static_cast to eliminate VC++ warnings. 2004-07-01 16:54 hkmoffa * Cantera/src/: ArrayViewer.h, Kinetics.h: static_cast to eliminate VC++ warnings. 2004-07-01 16:50 hkmoffa * Cantera/src/StoichManager.h: static_cast to eliminate VC++ warnings. 2004-07-01 16:47 hkmoffa * Cantera/src/: NasaThermo.h, ShomateThermo.h, RateCoeffMgr.h, ThirdBodyMgr.h: static_cast to eliminate VC++ warnings. 2004-07-01 16:46 hkmoffa * Cantera/src/plots.cpp: static_casts to eliminate VC++ warnings. 2004-07-01 16:46 hkmoffa * Cantera/src/units.h: small changes to eliminate VC++ warnings. 2004-07-01 16:40 hkmoffa * Cantera/src/DenseMatrix.cpp: static_cast to eliminate VC++ warnings 2004-07-01 16:35 hkmoffa * Cantera/src/: Group.cpp, Group.h: Fixed an error that turned up in VC++. I think the problem was that VC++ didn't allow friend functions to be defined in the body of declarations in .h files. 2004-07-01 16:26 hkmoffa * Cantera/src/Elements.cpp: static cast added to avoid VC++ compiler warning. 2004-07-01 16:25 hkmoffa * Cantera/src/Array.h: static_cast added to avoid VC++ compiler issues. 2004-07-01 16:22 hkmoffa * Cantera/src/xml.cpp: VC++ warnings were taken out 2004-07-01 16:12 hkmoffa * Cantera/src/xml.h: Added static_cast to remove VC++ compiler warning. 2004-06-30 15:30 hkmoffa * Cantera/src/ImplicitChem.cpp: Fixed an error with a calling statement. 2004-06-30 14:08 hkmoffa * Cantera/src/ResidEval.h: Fixed a compiler error that showed up VC++ 2004-06-28 16:51 hkmoffa * Cantera/src/Phase.h: Set m_xml to zero after deletion. 2004-06-28 16:49 hkmoffa * Cantera/src/importCTML.h: Added the installSpecies() declaration back in. This is needed for the particle species thermo object. It's in the cpp file, but just not declared here. 2004-06-28 16:47 hkmoffa * Cantera/src/SpeciesThermoFactory.cpp: Added a few throw statements that was missing. Added a throw UnknownSpeciesThermo statement for cases where the complete thermo block is missing. This is necessary for particle species object to function. 2004-06-17 10:49 dggoodwin * Cantera/src/PureFluidPhase.cpp: initial import 2004-06-16 14:55 dggoodwin * Cantera/src/GasKinetics.cpp: changed call to ReactionStoichMgr::add so that non-integral reaction orders are correctly processed. 2004-06-08 17:59 dggoodwin * Cantera/src/: ConstDensityThermo.cpp, ConstDensityThermo.h, Constituents.cpp, Constituents.h, EdgePhase.h, Elements.h, Makefile.in, PureFluidPhase.h, SpeciesThermoFactory.cpp, SpeciesThermoFactory.h, StoichSubstance.cpp, StoichSubstance.h, SurfPhase.cpp, SurfPhase.h, ThermoFactory.cpp, ThermoPhase.cpp, ThermoPhase.h, importCTML.cpp, importCTML.h, xml.cpp, xml.h, zeroD/Wall.h: moved functions to read XML input files out of importCTML.cpp and into specific classes 2004-06-06 15:02 dggoodwin * Cantera/src/Elements.cpp: moved reading of xml element data to Elements.cpp 2004-06-03 22:19 dggoodwin * Makefile.in, configure, Cantera/matlab/setup_winmatlab.py, Cantera/python/Cantera/DustyGasTransport.py, Cantera/python/Cantera/Func.py, Cantera/python/Cantera/Interface.py, Cantera/python/Cantera/Phase.py, Cantera/python/Cantera/Reactor.py, Cantera/python/Cantera/ThermoPhase.py, Cantera/python/Cantera/Transport.py, Cantera/python/Cantera/importFromFile.py, Cantera/python/src/ctreactor_methods.cpp, Cantera/src/ct2ctml.cpp, config/configure, config/configure.in, test_problems/cxx_ex/gri30.xml, test_problems/cxx_ex/silane.xml: added comments 2004-06-02 21:01 dggoodwin * Cantera/python/Cantera/importFromFile.py: added comments 2004-06-02 20:44 dggoodwin * Cantera/python/Cantera/Interface.py: added comments 2004-06-02 05:57 dggoodwin * Cantera/python/: Cantera/Func.py, Cantera/Phase.py, Cantera/ThermoPhase.py, examples/reactor1.py, examples/reactor2.py: minor cleanup 2004-06-01 21:39 dggoodwin * Cantera/python/: Makefile.in, ctml_writer.py, setup.py.in: moved ctml_writer.py out of Cantera package 2004-05-29 21:04 dggoodwin * Cantera/src/oneD/: Sim1D.cpp, refine.cpp: fixed problem with continuing beyond max number of points 2004-05-29 21:02 dggoodwin * Cantera/python/Cantera/ctml_writer.py: converted to pure python 2004-05-23 17:08 dggoodwin * Cantera/matlab/cantera/: @Reactor/private/reactormethods.cpp, @Transport/private/newTransport.cpp, @Transport/private/trans_methods.cpp, @Wall/private/wallmethods.cpp, @XML_Node/private/newxml.cpp, @XML_Node/private/xmlmethods.cpp: removed unused files 2004-05-23 17:05 dggoodwin * Cantera/matlab/cantera/@Kinetics/private/: delkinetics.cpp, isrev.cpp, kin_get.cpp, kin_set.cpp, newkinetics.cpp, production.cpp, pstoich.cpp, rop.cpp, rstoich.cpp, rxnstring.cpp: removed unused files 2004-05-21 20:52 dggoodwin * Cantera/python/tutorial/: tut2.py, tut3.py, tut4.py: updated tutorials 2004-05-21 11:09 dggoodwin * Cantera/src/transport/MMCollisionInt.cpp: fixed bug in which upper T* limit was incorrect in fits if T*max > 100, as with helium. 2004-05-17 16:22 dggoodwin * config/configure.in: added test for sstream 2004-05-17 15:59 dggoodwin * Cantera/matlab/cantera/@ReactorNet/: addReactor.m, atol.m, rtol.m, setInitialTime.m, setMaxTimeStep.m, setTolerances.m, time.m: initial import 2004-05-17 09:23 dggoodwin * test_problems/cxx_ex/: kin1_blessed.csv, kin2_blessed.csv: reverted to previus version due to error in last versions 2004-05-16 06:54 dggoodwin * Cantera/src/: CVode.cpp, CVode.h, Integrator.h: changed setMaxStep to setMaxStepSize, setMinStep to setMinStepSize, and added setMaxSteps to set the maximum number of steps that will be taken. 2004-05-14 20:19 dggoodwin * Cantera/python/examples/critProperties.py: added example of computing critical-state properties 2004-05-14 14:15 dggoodwin * Cantera/src/transport/: MultiTransport.h, MultiTransport.cpp: added ability to compute mixture-averaged diffusion coefficients in class MultiTransport. 2004-05-13 10:52 dggoodwin * ChangeLog: log file generated from CVS log output by perl script cvs2cl.pl 2004-05-13 10:45 dggoodwin * Cantera/src/converters/CKParser.cpp: fixed bug in which a species name beginning with M was interpreted as a third body 2004-04-24 08:44 dggoodwin * configure, Cantera/matlab/setup_winmatlab.py, Cantera/python/Cantera/Func.py, Cantera/python/Cantera/Reactor.py, Cantera/python/examples/catcomb.py, Cantera/python/examples/diamond.py, Cantera/python/examples/dustygas.py, Cantera/python/examples/flame1.py, Cantera/python/examples/isentropic.py, Cantera/python/examples/mix1.py, Cantera/python/examples/mix2.py, Cantera/python/examples/reactor1.py, Cantera/python/examples/reactor2.py, data/inputs/diamond.cti: updated examples 2004-04-24 05:55 dggoodwin * Cantera/matlab/cantera/: @ReactorNet/ReactorNet.m, @ReactorNet/advance.m, @ReactorNet/reactornet_hndl.m, @ReactorNet/step.m, @ReactorNet/private/reactornetmethods.m, private/reactornetmethods.cpp: initial import 2004-04-24 05:50 dggoodwin * test_problems/: cxx_ex/kin1_blessed.csv, cxx_ex/kin2_blessed.csv, silane_equil/output_blessed.txt: updated blessed files due to slight change in how Nasa polynomial thermo properties computed 2004-04-23 14:02 hkmoffa * Cantera/src/surfKinetics.cpp: Call to the baseclass init() function from init() 2004-04-23 13:37 hkmoffa * Cantera/src/GasKinetics.cpp: Cosmetic -> changed args to fall after ( 2004-04-23 13:36 hkmoffa * Cantera/src/PureFluidPhase.h: Added a header. 2004-04-23 12:55 hkmoffa * Cantera/src/: importCTML.cpp, importCTML.h: Made checkRxnElementBalance global scoped, so that it could be used in cads package. 2004-04-23 12:05 hkmoffa * Cantera/src/importCTML.cpp: Strictly formatting- broke up long lines added a few comments. 2004-04-23 12:03 hkmoffa * Cantera/src/importCTML.h: Added prototypes for 2 functions. 2004-04-23 10:35 hkmoffa * Cantera/fortran/src/Makefile.in: Changed libfct.a.a to libfct.a 2004-04-23 10:17 hkmoffa * Cantera/fortran/f77demos/.cvsignore: Added 2 generated files. 2004-04-23 10:13 hkmoffa * Cantera/fortran/src/fct.cpp: Changed a getMassFractions() call from 2 args to 1 arg. The old method had been taken out of State.h. And, this file had not been subsequently updated. 2004-04-23 09:42 hkmoffa * Cantera/matlab/.cvsignore: Added setup_matlab.py, this is a generated file. 2004-04-23 09:41 hkmoffa * Cantera/src/.cvsignore: Added config.h 2004-04-23 09:34 dggoodwin * Cantera/src/importCTML.cpp: added function checkRxnElementBalance, and modified importReaction to call it before adding a reaction to check that it is balanced. 2004-04-22 15:59 hkmoffa * config/: configure, configure.in: Added python_prefix capability. Can now install site-packages into a different directory than the Cantera install directory. Added a particles section that shouldn't be turned on. 2004-04-22 15:54 hkmoffa * .cvsignore: Added a file. 2004-04-22 15:43 hkmoffa * Makefile.in: Making sure that build_particles=0 turns off going to cads directory 2004-04-22 15:42 hkmoffa * configure: Added a python_prefix capability that allows one to put python site packages in a different spot than cantera installation files. 2004-04-22 14:50 hkmoffa * tools/src/.cvsignore: Added 2 files. 2004-04-22 14:33 hkmoffa * Cantera/python/Makefile.in: Part of separating python prefix from prefix. 2004-04-22 14:28 hkmoffa * Makefile.in: Added installs for a few more files from demo directory. -> including Makefile.install -> Makefile 2004-04-22 14:14 hkmoffa * Cantera/cxx/: Makefile.in, demos/Makefile.in, demos/Makefile.install: Ok, think I fixed it. Added a demo results and added Makefile back into repository so that demo problems run correctly in both directories (and give the same result). 2004-04-22 12:49 hkmoffa * Cantera/cxx/demos/Makefile.in: Fixed an error in the clean rule. 2004-04-22 12:46 hkmoffa * config/configure.in: Fixed a typo. 2004-04-22 12:44 hkmoffa * config/: configure, configure.in: Added 2 directories to the list of Makefiles to be created. 2004-04-22 12:42 hkmoffa * Cantera/cxx/: Makefile.in, demos/.cvsignore, demos/Makefile, demos/Makefile.in, demos/kin1_blessed.csv, demos/kin1_blessed.dat, src/.cvsignore, src/Makefile.in, src/cxxutils.cpp, src/writelog.cpp: Added a small demo. Added comments. 2004-04-22 12:06 hkmoffa * Cantera/matlab/cantera/.cvsignore: Added ctbin.m 2004-03-18 05:26 dggoodwin * Cantera/matlab/cantera/@ThermoPhase/: setState_Psat.m, setState_Tsat.m: initial import 2004-03-12 19:25 dggoodwin * Cantera/src/Phase.cpp: bug fixedin setMassFractionsByName 2004-02-22 21:47 dggoodwin * Cantera/matlab/cantera/@Func/: char.m, display.m, plus.m, rdivide.m, subsref.m, times.m, private/funcmethods.m: initial import 2004-02-02 19:33 dggoodwin * Cantera/src/: EdgePhase.h, EdgeKinetics.cpp, EdgeKinetics.h: initial import 2004-01-30 15:14 hkmoffa * Cantera/clib/src/Makefile.in: Added an all: rule. The end effect is that the library isn't archived when there isn't any need to. 2004-01-30 10:27 hkmoffa * configure: Small change to all presetting end libs. 2004-01-14 08:30 hkmoffa * test_problems/cxx_ex/: gri30.xml, kin1_blessed.csv, kin2_blessed.csv: Changed the blessed files. There was a small change in the actual answer. 2004-01-14 08:03 hkmoffa * test_problems/surfkin/surface.xml: Changed the xml file to have the same element ordering as the gri file's elements. 2004-01-14 08:00 hkmoffa * test_problems/diamondSurf/: diamond.cti, diamond_blessed.xml, tdia_a.py: changed the cti file so that the elements of all phases were ordered the same. 2004-01-11 04:57 dggoodwin * Cantera/cxx/demos/: Makefile, kinetics1.cpp: initial import 2004-01-05 09:01 dggoodwin * Cantera/cxx/demos/: example_utils.h, kinetics1.cpp: initial import 2004-01-04 06:40 dggoodwin * Cantera/src/: config.h, ct2ctml.cpp: changed check.py to .check.py 2004-01-01 17:02 dggoodwin * test_problems/: cxx_ex/Makefile.in, cxx_ex/runtest, diamondSurf/runtest, silane_equil/runtest, surfkin/runtest: added definition of CANTERA_DATA 2004-01-01 15:41 dggoodwin * Cantera/cxx/src/Makefile.in: initial import 2004-01-01 15:39 dggoodwin * Makefile.in, config/configure, config/configure.in: cleanup 2004-01-01 15:26 dggoodwin * include/: Cantera.h, GRI30.h, IdealGasMix.h, Interface.h, README, ctml.h, equilibrium.h, integrators.h, kinetics.h, numerics.h, onedim.h, reactionpaths.h, surface.h, transport.h, zerodim.h: files moved to Cantera/cxx/include 2004-01-01 15:13 dggoodwin * Cantera/cxx/: cxxutils.cpp, writelog.cpp, src/cxxutils.cpp, src/writelog.cpp: innitial import 2004-01-01 15:11 dggoodwin * Cantera/: README.txt, cxx/include/Cantera.h, cxx/include/GRI30.h, cxx/include/IdealGasMix.h, cxx/include/Interface.h, cxx/include/equilibrium.h, cxx/include/integrators.h, cxx/include/kinetics.h, cxx/include/numerics.h, cxx/include/onedim.h, cxx/include/reactionpaths.h, cxx/include/surface.h, cxx/include/transport.h, cxx/include/zerodim.h, src/Makefile.in, src/ct2ctml.cpp: initial import 2004-01-01 11:56 dggoodwin * configure, Cantera/src/MMCollisionInt.cpp, Cantera/src/Makefile.in, Cantera/src/MixTransport.cpp, Cantera/src/Newton.h, Cantera/src/PropertyUpdater.h, Cantera/src/misc.cpp, include/Cantera.h, include/README, include/config.h, include/ftn_defs.h: cleanup 2003-12-31 00:38 dggoodwin * Makefile.in: - 2003-12-31 00:31 dggoodwin * Makefile.in: - 2003-12-31 00:27 dggoodwin * tools/Makefile.in: added build_ck 2003-12-31 00:14 dggoodwin * Cantera/src/ct2ctml.cpp: removed #include pypath.h 2003-12-31 00:04 dggoodwin * Makefile.in: - 2003-12-22 06:41 dggoodwin * config/: configure, configure.in, testpch.h: initial import 2003-12-22 06:30 dggoodwin * Makefile.in, config.h, Cantera/clib/src/ct.h, Cantera/clib/src/ctonedim.cpp, Cantera/matlab/setup_matlab.py, Cantera/matlab/cantera/buildwin.m, Cantera/matlab/cantera/private/transportmethods.cpp, Cantera/src/BandMatrix.cpp, Cantera/src/DenseMatrix.cpp, Cantera/src/config.h, Cantera/src/oneD/boundaries1D.cpp, config/configure, config/configure.in: updated Windows build procedure 2003-12-20 10:03 hkmoffa * Cantera/src/transport/MixTransport.cpp: Fix to getDiffusion in order to avoid a NAN result for m_nsp = 1 case and for mixtures with X_i=1.0. 2003-12-20 09:53 hkmoffa * tools/testtools/csvdiff.cpp: Fixed 2 things: stripped column names checked for zero title lines 2003-12-20 04:12 dggoodwin * Cantera/src/ChemEquil.cpp, examples/cxx/equil_example1.cpp, test_problems/cxx_ex/eq1_blessed.csv, test_problems/cxx_ex/eq1_blessed.dat: changed problem parameters to keep T in range 2003-12-20 04:06 dggoodwin * test_problems/cxx_ex/eq1_blessed.csv, test_problems/cxx_ex/eq1_blessed.dat, test_problems/silane_equil/output_blessed.txt, test_problems/silane_equil/silane_equil.cpp, examples/cxx/equil_example1.cpp: changed problem parameters to keep T in range 2003-12-20 03:43 dggoodwin * tools/templates/cxx/demo.cpp: changed example parameters 2003-12-20 03:39 dggoodwin * tools/templates/cxx/demo.cpp: changed example parameters 2003-12-20 03:35 dggoodwin * Makefile.in, Cantera/src/ChemEquil.cpp: minor cleanup 2003-12-19 21:09 dggoodwin * config.h, Cantera/matlab/setup_matlab.py, Cantera/src/config.h, tools/Makefile.in, tools/src/finish_install.py.in, tools/templates/cxx/demo.cpp: - 2003-12-19 21:08 dggoodwin * Cantera/src/ChemEquil.cpp: fixed temperature limits 2003-12-15 00:54 dggoodwin * config.h, Cantera/matlab/setup_matlab.py, Cantera/src/Makefile.in, Cantera/src/config.h, tools/bin/finish_install.py: - 2003-12-13 14:58 dggoodwin * Cantera/src/misc.cpp: - 2003-12-13 06:35 dggoodwin * INSTALLING, Makefile.in, Cantera/clib/src/ct.cpp, Cantera/matlab/setup_matlab.py, Cantera/matlab/setup_matlab.py.in, Cantera/matlab/cantera/@Solution/set.m, Cantera/python/setup.py.in, Cantera/src/BandMatrix.cpp, Cantera/src/Makefile.in, Cantera/src/SurfPhase.h, Cantera/src/importCTML.cpp, Cantera/src/importCTML.h, Cantera/src/utilities.h, config/configure, config/configure.in, data/inputs/Makefile.in, data/inputs/gri30.xml, ext/tpx/Hydrogen.cpp, ext/tpx/Oxygen.cpp, tools/bin/finish_install.py: cleanup 2003-12-13 06:08 dggoodwin * test_problems/cxx_ex/: gri30.xml, kin1_blessed.csv, kin2_blessed.csv, tr2_blessed.csv: rebaselined 2003-12-12 09:03 dggoodwin * Cantera/matlab/setup_matlab.py.in: - 2003-12-12 08:51 dggoodwin * Cantera/matlab/cantera/private/: reactormethods.cpp, flowdevicemethods.cpp, wallmethods.cpp: - 2003-12-12 08:46 dggoodwin * config/configure, config/configure.in, Cantera/matlab/setup_matlab.py.in: - 2003-12-12 08:44 dggoodwin * Cantera/matlab/setup_matlab.py.in: initial import 2003-12-12 08:28 dggoodwin * config/: configure, configure.in: - 2003-12-12 08:18 dggoodwin * Cantera/: matlab/Makefile.in, python/setup.py.in, python/Makefile.in: removed libconverters dependency 2003-12-12 08:15 dggoodwin * Cantera/clib/src/Makefile.in: removed libconverters dependency 2003-12-12 08:11 dggoodwin * INSTALLING, License.txt, config.h, config.h.in, configure, Cantera/src/Makefile.in, Cantera/src/config.h, Cantera/src/misc.cpp, config/configure, config/configure.in, tools/src/Makefile.in: isolated Chemkin file support to building ck2cti 2003-12-11 05:01 dggoodwin * Cantera/python/: Cantera/rxnpath.py, src/ctrpath_methods.cpp, src/methods.h: set font in reaction path diagrams 2003-12-11 04:15 dggoodwin * tools/src/package4mac.in: initial import 2003-12-11 04:06 dggoodwin * Cantera/src/transport/: DustyGasTransport.cpp, DustyGasTransport.h, MixTransport.cpp, MultiTransport.cpp, SolidTransport.cpp, TransportBase.h, TransportFactory.cpp: minor cleanup 2003-12-05 09:13 dggoodwin * Cantera/src/: PureFluidPhase.h, ThermoPhase.cpp, ThermoPhase.h, transport/DustyGasTransport.cpp, transport/DustyGasTransport.h: - 2003-11-24 08:39 dggoodwin * configure, Cantera/clib/src/ct.cpp, Cantera/clib/src/ct.h, Cantera/python/setup.py.in, Cantera/python/Cantera/ThermoPhase.py, Cantera/python/Cantera/ctml_writer.py, Cantera/python/src/ctthermo_methods.cpp, Cantera/src/State.h, Cantera/src/ThermoFactory.cpp, Cantera/src/ThermoPhase.h, Cantera/src/ctml.cpp, Cantera/src/ctml.h, Cantera/src/importCTML.cpp, Cantera/src/mix_defs.h, Cantera/src/xml.cpp, Cantera/src/oneD/StFlow.cpp, Cantera/src/transport/DustyGasTransport.cpp, ext/tpx/utils.cpp: - 2003-11-19 02:50 dggoodwin * Makefile.in, config/configure, config/configure.in, tools/templates/cxx/demo.cpp, tools/templates/cxx/demo.mak.in, tools/templates/f77/demo.f, tools/templates/f77/demo.mak.in, tools/templates/f77/demo_ftnlib.cpp: - 2003-11-19 01:37 dggoodwin * Makefile.in, config.h, Cantera/src/config.h, config/configure, config/configure.in, tools/Makefile.in, tools/bin/finish_install.py, tools/man/mixmaster.1, tools/src/finish_install.py.in, tools/templates/f77/demo.mak.in: - 2003-11-17 07:19 dggoodwin * config/configure, config/configure.in, config.h, Cantera/src/config.h, tools/Makefile.in, tools/bin/finish_install.py, tools/doc/Cantera.cfg: - 2003-11-17 06:10 dggoodwin * Makefile.in, README.txt, config.h.in, configure: - 2003-11-17 05:52 dggoodwin * tools/: src/ck2cti.cpp, src/finish_install.py.in, man/mixmaster.1: initial import 2003-11-17 05:51 dggoodwin * Cantera/: matlab/Makefile.in, python/Cantera/Transport.py, python/examples/flame2.py, src/oneD/StFlow.cpp, src/oneD/StFlow.h: cleanup 2003-11-16 09:14 dggoodwin * tools/man/ck2cti.1: initial import 2003-11-13 03:54 dggoodwin * Cantera/src/oneD/MultiJac.cpp: removed NaN test 2003-11-12 10:56 dggoodwin * Cantera/src/oneD/StFlow.cpp: multicomponent transport working 2003-11-01 02:11 dggoodwin * Cantera/user/: Makefile.in, user.cpp: initial import 2003-10-31 20:48 dggoodwin * Cantera/python/Cantera/ctml_writer.py: added capability to have species names with embedded commas 2003-10-24 03:11 dggoodwin * tools/doc/html/banner4.jpg: initial import 2003-10-21 17:33 dggoodwin * Cantera/src/: State.h, State.cpp: minor cleanup 2003-10-15 09:21 hkmoffa * Cantera/src/misc.cpp: Added a call to delete the static instance of a Falloff factory 2003-10-15 09:20 hkmoffa * Cantera/src/transport/: TransportFactory.cpp, TransportFactory.h: Fixed a bug in the destructor, wherein an infinite loop condition may occur. 2003-10-14 05:58 dggoodwin * Cantera/python/Cantera/DustyGasTransport.py: initial import 2003-09-25 13:37 dggoodwin * Cantera/src/transport/: DustyGasTransport.cpp, DustyGasTransport.h, Makefile.in, TransportBase.h, TransportFactory.cpp: added DustyGasTransport 2003-09-16 08:58 hkmoffa * Cantera/src/ctml.cpp: Fixed a rather hideous error in getMap(), that was causing element compositions to be read incorrectly when the species is made up of a large numbers of a single element. 2003-09-08 06:33 dggoodwin * Cantera/fortran/f77demos/: README.txt, ctlib.f, f77demos.mak.in, isentropic.f: initial import 2003-09-05 23:04 dggoodwin * tools/templates/f77/: README_WIN32.txt, f77demo.dsp: initial import 2003-09-05 09:57 hkmoffa * test_problems/diamondSurf/runDiamond.cpp: loosened the tolerances on nil printing 2003-09-05 09:42 hkmoffa * Cantera/src/transport/: MixTransport.cpp, MixTransport.h, MultiTransport.cpp: Fixed several UMR's discovered while using valgrind. 2003-09-05 09:20 hkmoffa * test_problems/diamondSurf/: Makefile.in, runDiamond.cpp, runDiamond_blessed.out: Fixed the Makefile.in, undated runDiamond to print out more nulls, and changed the solution back. I had an error in my Cantera version that created an undocumented changed in the result. 2003-09-05 07:45 hkmoffa * data/transport/misc_tran.dat: Added a III-V database 2003-09-04 16:42 dggoodwin * Cantera/python/Cantera/OneD/: __init__.py, flame.py, onedim.py: initial import 2003-09-03 13:00 hkmoffa * test_problems/diamondSurf/: runDiamond.cpp, runDiamond_blessed.out: Rebaselined due to change in units 2003-09-03 12:59 hkmoffa * Cantera/src/: FalloffFactory.h, FalloffMgr.h: Fixed an error that I had introduced. 2003-09-03 12:59 hkmoffa * test_problems/cxx_ex/: kin1_blessed.csv, kin2_blessed.csv: rebaselined due to change in constants. 2003-09-03 11:49 hkmoffa * Cantera/src/converters/Makefile.in: Might as well keep this in till it breaks. 2003-09-03 11:48 hkmoffa * Cantera/src/converters/: ck2ctml.cpp, ck2ctml.h: Added const to the aguement lists. 2003-09-03 11:45 hkmoffa * Cantera/src/: global.h, misc.cpp: Added a function called appdelete(), which deletes all global data malloced by Cantera. With this call added to applications, Cantera passes the leak check from the valgrind application. (Well there is some squirrely behavior associated with either valgrind, linux, or the stl implementation, but it's not Cantera's fault). I also changed get_XML_File to store the absolute pathname in the map, so that the same XML tree isn't deleted twice. Lookups are always done wrt absolute pathnames. 2003-09-03 11:39 hkmoffa * Cantera/src/: importCTML.cpp, importCTML.h: Added the function get_XML_NameID, which does a search on the xml element name and id attribute. Made importSpecies() a global function. I needed this in order to read in enhancements to the XML data file for the PartSpecPhase class. 2003-09-03 11:33 hkmoffa * Cantera/src/: InterfaceKinetics.cpp, InterfaceKinetics.h: Added comments and changed the order of functions to place like functions in blocks. 2003-09-03 11:31 hkmoffa * Cantera/src/ThermoPhase.h: Cleanup of comment sections. 2003-09-03 11:31 hkmoffa * Cantera/src/State.cpp: cleanup 2003-09-03 11:29 hkmoffa * Cantera/src/: SpeciesThermo.h, SpeciesThermoFactory.cpp, SpeciesThermoFactory.h: Two main changes: The routines will now throw a named error condition when it can't match the species thermo or it can't find the species thermo. This is used in PartSpecPhase.cpp to signal that the thermo functions should be created on the fly from the bulk phase thermo and the bulk species basis for the particle species. The second one is to eliminate a potential fatal error of calling a delete for an object in the object's own destructor function. 2003-09-03 11:22 hkmoffa * Cantera/src/: xml.cpp, xml.h: Added the function findNameID, which does a tree lookup on the name and the id. Took out m_level, which seemed to have no purpose. 2003-09-03 11:19 hkmoffa * Cantera/src/Phase.h: Added comments. 2003-09-03 11:18 hkmoffa * Cantera/src/.cvsignore: Added a file. 2003-09-03 11:17 hkmoffa * Cantera/src/units.h: fixed a potentially fatal error of doing a delete in a destructor on the object containing the destructor. 2003-09-03 11:15 hkmoffa * Cantera/src/: Constituents.cpp, Constituents.h: Added a vector get for the atoms in a species. 2003-09-03 08:35 hkmoffa * Cantera/src/: FalloffFactory.h, FalloffMgr.h: Fixed an error with the destructors. valgrind showed that destructor wasn't being called for single instance of FalloffFactory. 2003-08-29 07:59 dggoodwin * Cantera/clib/src/genpy.py: initial import 2003-08-25 12:50 dggoodwin * Cantera/matlab/cantera/examples/catcomb.m: initial import 2003-08-25 11:29 hkmoffa * Cantera/src/SurfPhase.h: Added a dummy routine to set and store the pressure. It doesn't have an effect on anything. However, it doesn't cause a cantera error. 2003-08-23 10:14 dggoodwin * data/inputs/nasa.cti: initial import 2003-08-21 15:39 hkmoffa * Cantera/src/IncompressibleThermo.h: Changed fmax to fmaxx. 2003-08-21 15:38 hkmoffa * Cantera/src/RateCoeffMgr.h: Added the writeUpdate() function. It was needed to resolve externals. 2003-08-21 15:37 hkmoffa * Cantera/src/MultiDomain.h: changed fmax to fmaxx 2003-08-21 15:36 hkmoffa * Cantera/src/RxnRates.h: Changed fmax() to fmaxx() in one call. 2003-08-21 15:35 hkmoffa * Cantera/src/importCTML.cpp: Added more comments. 2003-08-21 15:34 hkmoffa * Cantera/src/ct2ctml.cpp: Commented out a spurious write operation 2003-08-21 15:33 hkmoffa * Cantera/src/ctml.h: Added a name of an argument. 2003-08-21 15:32 hkmoffa * Cantera/src/misc.cpp: Added a comment 2003-08-21 15:32 hkmoffa * Cantera/src/: xml.cpp, xml.h: Changed findXMLPhase() to return a non const XML tree. It broke the runDiamond program the other way, because importPhase() uses a non const XML tree argument. Also, the change commits a small alteration in the xml write operation that allows for the top level of an xml file to contain multiple elements. previously this was not possible. 2003-08-21 15:28 hkmoffa * Cantera/src/zeroD/Reactor.cpp: Fixed a UMR in the file. 2003-08-21 15:26 hkmoffa * examples/cxx/: equil_example1.cpp, kinetics_example1.cpp, rxnpath_example1.cpp, transport_example1.cpp, transport_example2.cpp: The find_xml interface has been deprecated. Therefore, there were changes needed in these files. 2003-08-21 15:25 hkmoffa * test_problems/: Makefile.in, silane_equil/output_blessed.txt, silane_equil/silane_equil.cpp, surfkin/Interface.h, surfkin/Makefile.in, surfkin/output_blessed.txt, surfkin/surfdemo.cpp: Rebaselined the problem. The solution changed in the 4th sig digit, because, I think, the physical constants changed in ct_defs.h 2003-08-21 15:23 hkmoffa * test_problems/diamondSurf/: runDiamond.cpp, runDiamond_blessed.out: Rebaselined test, because the answer changed in the 4th digit. I think it is due to the change in physical constants in ct_defs.h 2003-08-21 10:48 hkmoffa * Cantera/Makefile.in: changed fortran to fortran/src. Added particle hooks which should all be turned off by default. 2003-08-21 10:39 hkmoffa * Cantera/fortran/src/: .cvsignore, fct.cpp: find_XML is no longer in the Cantera kernel API. this fixes the problem, replacing it with calls to get_XML_Node(). 2003-08-21 08:35 hkmoffa * test_problems/diamondSurf/: diamond.cti, diamond_blessed.xml, runDiamond_blessed.out: Rebaselined after adding in a reaction 2003-08-21 07:27 dggoodwin * Cantera/src/zeroD/Wall.cpp: add support for surface chem 2003-08-21 07:26 dggoodwin * Cantera/src/zeroD/Wall.h: added support for surface chemistry on each side of the wall 2003-08-21 07:26 dggoodwin * Cantera/src/zeroD/Reactor.h: added surface chemistry 2003-08-21 07:25 dggoodwin * Cantera/src/zeroD/Reactor.cpp: added support for surface chemistry. 2003-08-20 19:40 dggoodwin * Cantera/src/ct2ctml.cpp: fixed get_CTML_Tree 2003-08-20 14:34 hkmoffa * Cantera/src/misc.cpp: Added header lines to the file 2003-08-20 13:23 hkmoffa * Cantera/src/xml.h: Added a CVS version comment block 2003-08-20 13:00 hkmoffa * config/configure.in: Added another test directory 2003-08-20 12:36 hkmoffa * test_problems/diamondSurf/: .cvsignore, Makefile.in, diamond.cti, diamond_blessed.xml, runDiamond.cpp, runDiamond_blessed.out, run_diamond.py, runtest: Added a new test problem 2003-08-20 08:30 dggoodwin * Cantera/src/oneD/StFlow.h: added some 'const's 2003-08-20 08:28 dggoodwin * Cantera/src/global.h: added two new functions. 2003-08-20 08:27 dggoodwin * Cantera/src/: ctml.h, oneD/Sim1D.cpp, oneD/StFlow.cpp: added some 'const's 2003-08-20 08:27 dggoodwin * Cantera/src/ct_defs.h: changed gas constant to 1999 CODATA value, removed option to not use kmol. 2003-08-20 08:26 dggoodwin * Cantera/src/ct2ctml.cpp: get_CTML_Tree is now deprecated. Use get_XML_File in misc.cpp. 2003-08-20 08:23 dggoodwin * Cantera/src/: SpeciesThermoFactory.cpp, ThermoPhase.h: added some 'const's 2003-08-20 08:19 dggoodwin * Cantera/src/misc.cpp: added option to clear all entries in close_XML_File. 2003-08-20 08:18 dggoodwin * Cantera/python/Cantera/Transport.py: stopped storing ThermoPhase object, since this is self-referential in classes like Solution that derive from Transport and ThermoPhase. 2003-08-20 08:16 dggoodwin * Cantera/python/Cantera/Kinetics.py: stopped storing ThermoPhase objects, since this is self-referential if a class derives from both Kinetics and ThermoPhase, causing it to never be deleted. 2003-08-20 08:15 dggoodwin * Cantera/python/Cantera/solution.py: changed call to XML_Node constructor 2003-08-20 08:13 dggoodwin * Cantera/python/Cantera/XML.py: removed self.root, which was self-referencing. 'build' replaced by 'get_XML_File' in constructor. 2003-08-20 08:03 hkmoffa * Cantera/src/importCTML.cpp: More comments added 2003-08-19 15:02 hkmoffa * Cantera/python/Cantera/ctml_writer.py: Fixed an error in an argument list 2003-08-19 10:28 hkmoffa * tools/src/: Makefile.in, ck2cti.cpp, ck2ctml.cpp, cti2ctml.cpp: Added some conversion programs. 2003-08-19 07:57 hkmoffa * Cantera/src/SurfPhase.h: Added more comments 2003-08-17 22:05 dggoodwin * Cantera/python/Cantera/ctml_writer.py: added support for specified reaction order, sticking coefficients, coverage dependence of rate coefficients; fixed error where site_density was not being converted to SI. 2003-08-17 12:14 dggoodwin * Cantera/src/RateCoeffMgr.h: added comments 2003-08-17 11:56 dggoodwin * Cantera/src/importCTML.cpp: Added support for coverage-dependent reaction rates and sticking coefficients, and reactions with specified reaction order. 2003-08-17 05:47 dggoodwin * Cantera/src/Kinetics.h: cleaned up and added more comments 2003-08-16 13:17 dggoodwin * Cantera/python/Cantera/ctml_writer.py: changed handling of reaction pre-exponential units to write converted value to CTML, rather than pass original value with a units string 2003-08-14 09:06 hkmoffa * Cantera/src/Kinetics.h: Organized the functions to list better under doxygen. Added more comments. Didn't change any of the actual code. 2003-08-13 08:24 hkmoffa * Cantera/src/xml.cpp: Fixed an error with build(). Basically it was having trouble with the tag "--". I think that tag is illegal anyway. 2003-08-12 17:55 hkmoffa * Cantera/src/xml.cpp: Fixed two errors in reading an xml file. 1) empty child xml elements had an extra / character being added onto the end of their name 2) comments with beginning and ending white space were being copied with an extra space added on to the front and end of the string. 2003-08-11 10:08 hkmoffa * Cantera/src/State.h: Added comments. 2003-08-11 09:13 hkmoffa * Cantera/src/Kinetics.h: Added more comments. 2003-08-08 12:58 hkmoffa * Cantera/src/InterfaceKinetics.cpp: Added more comment.s 2003-08-07 14:49 hkmoffa * test_problems/surfkin/surface.xml: Updated the xml data file 2003-08-07 14:42 hkmoffa * Cantera/src/Makefile.in: Added a make hdr-collect line. This is needed because the .h files in the build directory should be kept up to date with the .a files in the build directory. Thus, you need to update. Obviously, a more refined approach could be envisioned where only out of date .h files are copied. 2003-08-07 08:59 hkmoffa * Cantera/src/importCTML.cpp: Added a lot of comments to the routine. 2003-08-06 17:23 hkmoffa * test_problems/Makefile.in: Added the Makefile.in input file 2003-08-06 17:22 hkmoffa * test_problems/cxx_ex/: kin1_blessed.csv, tr1_blessed.csv, tr2_blessed.csv: Rebaselined these three tests. The results had changed in the 3rd significant digit. The changes, according to Goodwin, were most likely due to the change in the method of inclusion of the activation energies. Basically, a non standard kcal/mole conversion method was used to convert activation energies to temperatures internally. 2003-08-06 17:16 hkmoffa * Cantera/src/ct2ctml.cpp: Fixed an error in get_CTML_Tree() where the program wouldn't use the path where the file was found, but would assume the file was located in the current directory. This caused an empty ifstream to be send to build(), which then created an infinite loop (probably another error in build() that needs to be fixed). 2003-08-06 16:16 hkmoffa * Cantera/src/converters/Makefile.in: Broke a long line in two 2003-08-06 15:43 hkmoffa * config/: configure, configure.in: Added the surfkin directory 2003-08-06 11:30 hkmoffa * test_problems/cxx_ex/: gri30.xml, silane.xml: Updated xml files 2003-08-06 11:15 hkmoffa * include/: GRI30.h, IdealGasMix.h: Fixed GRI30.h. The id was wrong and caused a test problem to fail. 2003-08-06 11:13 hkmoffa * examples/cxx/.cvsignore: Added to cvsignore list 2003-08-06 10:32 hkmoffa * test_problems/surfkin/: .cvsignore, Interface.h, Makefile.in, output_blessed.txt, runtest, surface.xml, surfdemo.cpp: Added a simple test that calculate a rate of production for a surface mechanism 2003-08-06 10:14 hkmoffa * Cantera/src/ctml.cpp: Added a get_CTML_Tree() function. It was missing though there was an entry in ctml.h and IdealGasMix.h used it. 2003-08-06 10:10 hkmoffa * test_problems/silane_equil/silane.xml: updated xml file. test passes. 2003-08-04 16:15 hkmoffa * Cantera/src/: GasKinetics.cpp, GasKinetics.h: Added a bunch of new routines to return delta thermo values and reaction rate constants. 2003-08-04 16:10 hkmoffa * Cantera/src/converters/: ck2ct.cpp, ck2ctml.cpp: Fixed up a couple of issues with the stringstream block. That block works for reading transport databases with comments in them. The other block seems to get hung up. 2003-08-04 07:27 hkmoffa * tools/src/Makefile.in: Added a dependency to library files 2003-08-01 17:37 hkmoffa * Cantera/src/RateCoeffMgr.h: added a comment. 2003-08-01 17:36 hkmoffa * Cantera/src/: ThermoFactory.cpp, ThermoFactory.h: Added a specific named error condition for when the thermo factory can't find a match against a known ThermoPhase derivative class. This can be (and is in cttables) used to catch thrown errors, so that the kernel can be made extensible wrt other ThermoPhase derivative classes it may not know about. 2003-08-01 17:34 hkmoffa * Cantera/src/: KineticsFactory.cpp, KineticsFactory.h: Added a specific named error for not matching against a kinetics model. This can be (and is in cttables) used to catch a thrown error condition to make the kernel extensible wrt new kinetics managers. 2003-08-01 17:29 hkmoffa * Cantera/src/InterfaceKinetics.cpp: Added a few comments 2003-08-01 17:28 hkmoffa * Cantera/src/InterfaceKinetics.h: Added a comment block 2003-08-01 17:27 hkmoffa * Cantera/src/Kinetics.h: Organized the routines into sections. Added a bunch of routines that report the change in thermo quantities due to reactions. 2003-08-01 17:25 hkmoffa * Cantera/src/xml.cpp: Took out print statements in debug blocks 2003-08-01 17:24 hkmoffa * Cantera/src/: ThermoPhase.cpp, ThermoPhase.h: Added a function getUnitsStandardConc() that will report in a vector form what the units are (in MKS) for the standard and generalized concentrations. This is used to find what the units are for reaction rate constants and is used by cttables to actually print out the units for reaction rate constants. 2003-08-01 17:16 hkmoffa * Cantera/src/transport/: MixTransport.cpp, MixTransport.h, MultiTransport.cpp, MultiTransport.h, TransportBase.h, TransportFactory.cpp, TransportFactory.h: Added a function to MixTransport and MultiTransport that returns all of the raw transport data input from the original database. I am using this in cttables for the print out to provide closure to the user's expectations. 2003-08-01 13:50 hkmoffa * Cantera/src/State.h: Added one more routine, needed to get at private data 2003-08-01 13:13 hkmoffa * Cantera/src/ctml.cpp: Slight change in comment 2003-08-01 12:44 hkmoffa * Cantera/src/ctvector.cpp: Check for null before deleting or copying. Not strictly necessary, but good form. 2003-08-01 12:43 hkmoffa * Cantera/src/mix_defs.h: Added descriptions of the ThermoPhase classes known to this routine. 2003-08-01 12:42 hkmoffa * Cantera/src/ctml.cpp: UPgraded one error condition statement 2003-07-29 15:37 dggoodwin * Cantera/src/State.h: moved some methods to State.cpp 2003-07-29 15:32 dggoodwin * Cantera/src/State.cpp: initial import 2003-07-25 13:46 hkmoffa * Cantera/src/: xml.cpp, xml.h: Fixed several serious errors and added a couple of routines. 1) the read operation would hash any quoted string with a space character in it. 2) changed children() to return a reference rather than the complete object 3) write() would leave off the final endl character. This has been fixed. Additions: copy() copyUnion(): union of two trees; this routine may be problematic findXMLPhase(): phase lookup. Notes: find_XML() still contains a memory leak. 2003-07-24 08:58 hkmoffa * Cantera/src/Kinetics.h: Fixed an error in the Constructor function. m_indexPhase wasn't being set at all 2003-07-23 14:54 hkmoffa * Cantera/src/Kinetics.h: Added a lot of comments to the header file 2003-07-23 14:53 hkmoffa * Cantera/src/ConstDensityThermo.h: Took out an unnecessary redefinition of m_kk from an inherited class 2003-07-23 14:51 hkmoffa * Cantera/src/stringUtils.cpp: Slight formatting change 2003-07-23 08:41 hkmoffa * Cantera/src/StoichManager.h: Added comments to the file 2003-07-21 09:28 hkmoffa * Cantera/src/Elements.h: Took out a surplus doxygen comment about the Cantera Namespace. It created an error during doxygen compilation 2003-07-21 09:26 hkmoffa * Cantera/src/ThermoPhase.h: Added more doxygen comments to the files. Added a catch/throw block to setstate_TPX(). 2003-07-21 09:08 hkmoffa * Cantera/src/State.h: Commented the member data. 2003-07-21 09:02 hkmoffa * Cantera/src/Constituents.h: Took out a double nested @name that gave a warning to doxygen 2003-07-18 13:19 hkmoffa * Cantera/src/Phase.h: Added comments about m_kk needing to be restated in this class. 2003-07-07 09:45 hkmoffa * Cantera/src/ResidEval.h: Added more functions to the virtual base class. This will mean that all classes that inherit from this class will be broken until they too add definitions for these functions. 2003-07-07 09:39 hkmoffa * Cantera/src/converters/ck2ctml.cpp: Commented out several statically defined functions that were not used in the file. 2003-07-07 08:35 hkmoffa * Cantera/src/SolidCompound.h: Fixed a compiler warning. Linux warns against initialization lists which are not in the same order as items in the class itself. 2003-07-04 00:35 dggoodwin * tools/bin/finish_install.py: added 'source setup_cantera' 2003-07-04 00:18 dggoodwin * tools/bin/finish_install.py: added warning if the Python interface does not install. 2003-07-03 09:23 hkmoffa * Cantera/src/Array.h: Added the function ptrColumn(), which returns a pointer to the top of a column of the matrix. 2003-06-27 07:08 dggoodwin * Cantera/src/converters/ck2ctml.cpp: corrected bug in addTransport 2003-06-27 07:07 dggoodwin * tools/bin/finish_install.py: added script to set matlab path 2003-06-11 14:33 hkmoffa * Cantera/src/.cvsignore: Added another file to this list 2003-06-10 09:39 hkmoffa * Cantera/src/misc.cpp: Fixed a typo in a comment 2003-06-10 09:32 hkmoffa * test_problems/silane_equil/.cvsignore: Added a file to the ignore list, created during the test 2003-06-10 08:27 hkmoffa * Cantera/src/Makefile.in: Uncommented the tpx rule 2003-06-10 08:26 hkmoffa * Cantera/matlab/Makefile.in: Took out the references to the directories, 1D/@Domain1D/private and 1D/@Stack/private. They don't currently exist in the present version of the distribution. 2003-06-10 08:07 hkmoffa * include/.cvsignore: Added a .cvsignore file 2003-06-10 08:02 hkmoffa * tools/templates/: f77/.cvsignore, cxx/.cvsignore: Added a .cvsignore file 2003-06-09 17:19 hkmoffa * Cantera/cxx/.cvsignore: Added this file so that cvs update doesn't flag Makefile 2003-06-09 15:02 hkmoffa * tools/src/.cvsignore: Added a file to the ignore list 2003-06-08 08:18 dggoodwin * Cantera/matlab/cantera/@Transport/trans_hndl.m: initial import 2003-06-08 07:52 dggoodwin * Cantera/: cxx/writelog.cpp, python/src/writelog.cpp, matlab/cantera/private/write.cpp: initial import 2003-06-08 07:41 dggoodwin * Cantera/src/oneD/boundaries1D.cpp: initial import 2003-05-13 12:43 dggoodwin * Cantera/src/: DASPK.h, InterfaceKinetics.cpp, ReactionPath.cpp, ReactionPath.h, funcs.cpp, importCTML.cpp, misc.cpp, oneD/Inlet1D.h, oneD/Makefile.in, oneD/MultiNewton.cpp, oneD/OneDim.cpp, oneD/OneDim.h, oneD/Resid1D.h, oneD/Sim1D.cpp, oneD/Sim1D.h, oneD/StFlow.cpp, oneD/StFlow.h, oneD/newton_utils.cpp, oneD/refine.cpp, oneD/refine.h: - 2003-05-06 07:20 dggoodwin * tools/templates/cxx/: demo.cpp, demo.mak.in: fixed errors 2003-05-06 06:36 dggoodwin * tools/templates/cxx/: demo.cpp, demo.mak.in: initial import 2003-04-24 02:48 dggoodwin * Cantera/python/examples/function1.py: initial import 2003-04-21 11:16 dggoodwin * tools/doc/: Cantera.cfg, ct.css, footer.html, header.html: initial import 2003-04-21 02:55 dggoodwin * Makefile.in: corrected lib directory 2003-04-20 07:40 dggoodwin * Cantera/matlab/Makefile.in: fixed library in Makefile.in 2003-04-20 06:26 dggoodwin * Cantera/: matlab/.cvsignore, matlab/cantera/.cvsignore, python/.cvsignore, src/.cvsignore: added .cvsignore in mattlab 2003-04-20 06:21 dggoodwin * config/: configure, configure.in: added target to buildlib 2003-04-20 06:18 dggoodwin * Cantera/python/: Makefile.in, setup.py, setup.py.in: perform configuration of setup.py 2003-04-18 16:19 dggoodwin * include/: GRI30.h, onedim.h, reactionpaths.h, transport.h, zerodim.h: minor cleanup 2003-04-18 04:00 dggoodwin * tools/templates/f77/: demo.mak.in, demo_ftnlib.cpp, sample.mak.in: renamed sample.mak.in to demo.mak.in 2003-04-14 10:57 dggoodwin * .cvsignore, INSTALLING, License.rtf, License.txt, Makefile.in, README, config.h, config.h.in, configure, apps/README.txt, apps/MixMaster/.cvsignore, apps/MixMaster/CompositionFrame.py, apps/MixMaster/ControlPanel.py, apps/MixMaster/DataFrame.py, apps/MixMaster/DataGraph.py, apps/MixMaster/Edit.py, apps/MixMaster/ElementFrame.py, apps/MixMaster/GraphFrame.py, apps/MixMaster/__init__.py, apps/MixMaster/config.py, apps/MixMaster/flowpanel.py, Cantera/.cvsignore, Cantera/Makefile.in, Cantera/clib/src/.cvsignore, Cantera/clib/src/Cabinet.h, Cantera/clib/src/Makefile.in, Cantera/clib/src/Storage.cpp, Cantera/clib/src/Storage.h, Cantera/clib/src/clib_defs.h, Cantera/clib/src/ct.cpp, Cantera/clib/src/ct.h, Cantera/clib/src/ctbdry.cpp, Cantera/clib/src/ctbdry.h, Cantera/clib/src/ctfunc.cpp, Cantera/clib/src/ctfunc.h, Cantera/clib/src/ctnum.cpp, Cantera/clib/src/ctnum.h, Cantera/clib/src/ctreactor.cpp, Cantera/clib/src/ctreactor.h, Cantera/clib/src/ctrpath.cpp, Cantera/clib/src/ctrpath.h, Cantera/clib/src/ctstagn.cpp, Cantera/clib/src/ctstagn.h, Cantera/clib/src/ctsurf.cpp, Cantera/clib/src/ctsurf.h, Cantera/clib/src/ctxml.cpp, Cantera/clib/src/ctxml.h, Cantera/cxx/README, Cantera/lib/README, Cantera/matlab/Makefile.in, Cantera/matlab/setup_matlab.py, Cantera/matlab/cantera/Contents.m, Cantera/matlab/cantera/GRI30.m, Cantera/matlab/cantera/IdealGasMix.m, Cantera/matlab/cantera/MassFlowController.m, Cantera/matlab/cantera/Reservoir.m, Cantera/matlab/cantera/Valve.m, Cantera/matlab/cantera/adddir.m, Cantera/matlab/cantera/air.m, Cantera/matlab/cantera/build.m, Cantera/matlab/cantera/buildux.m, Cantera/matlab/cantera/buildwin.m, Cantera/matlab/cantera/ck2ctml.m, Cantera/matlab/cantera/conhp.m, 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Cantera/matlab/cantera/@Kinetics/kinetics_hndl.m, Cantera/matlab/cantera/@Kinetics/multiplier.m, Cantera/matlab/cantera/@Kinetics/nReactions.m, Cantera/matlab/cantera/@Kinetics/nTotalSpecies.m, Cantera/matlab/cantera/@Kinetics/netProdRates.m, Cantera/matlab/cantera/@Kinetics/reactionEqn.m, Cantera/matlab/cantera/@Kinetics/rop.m, Cantera/matlab/cantera/@Kinetics/rop_f.m, Cantera/matlab/cantera/@Kinetics/rop_net.m, Cantera/matlab/cantera/@Kinetics/rop_r.m, Cantera/matlab/cantera/@Kinetics/rxnEqs.m, Cantera/matlab/cantera/@Kinetics/setMultiplier.m, Cantera/matlab/cantera/@Kinetics/stoich_net.m, Cantera/matlab/cantera/@Kinetics/stoich_p.m, Cantera/matlab/cantera/@Kinetics/stoich_r.m, Cantera/matlab/cantera/@Kinetics/ydot.m, Cantera/matlab/cantera/@Kinetics/private/delkinetics.cpp, Cantera/matlab/cantera/@Kinetics/private/isrev.cpp, Cantera/matlab/cantera/@Kinetics/private/kin_get.cpp, Cantera/matlab/cantera/@Kinetics/private/kin_set.cpp, Cantera/matlab/cantera/@Kinetics/private/kinetics_get.m, Cantera/matlab/cantera/@Kinetics/private/kinetics_set.m, Cantera/matlab/cantera/@Kinetics/private/newkinetics.cpp, Cantera/matlab/cantera/@Kinetics/private/production.cpp, Cantera/matlab/cantera/@Kinetics/private/pstoich.cpp, Cantera/matlab/cantera/@Kinetics/private/rop.cpp, Cantera/matlab/cantera/@Kinetics/private/rstoich.cpp, Cantera/matlab/cantera/@Kinetics/private/rxnstring.cpp, Cantera/matlab/cantera/@Reactor/Reactor.m, Cantera/matlab/cantera/@Reactor/advance.m, Cantera/matlab/cantera/@Reactor/clear.m, Cantera/matlab/cantera/@Reactor/density.m, Cantera/matlab/cantera/@Reactor/enthalpy_mass.m, Cantera/matlab/cantera/@Reactor/hndl.m, Cantera/matlab/cantera/@Reactor/insert.m, Cantera/matlab/cantera/@Reactor/intEnergy_mass.m, Cantera/matlab/cantera/@Reactor/mass.m, Cantera/matlab/cantera/@Reactor/massFraction.m, Cantera/matlab/cantera/@Reactor/massFractions.m, Cantera/matlab/cantera/@Reactor/pressure.m, Cantera/matlab/cantera/@Reactor/reactor_hndl.m, Cantera/matlab/cantera/@Reactor/setEnergy.m, Cantera/matlab/cantera/@Reactor/setInitialTime.m, Cantera/matlab/cantera/@Reactor/setInitialVolume.m, Cantera/matlab/cantera/@Reactor/setKineticsMgr.m, Cantera/matlab/cantera/@Reactor/setThermoMgr.m, Cantera/matlab/cantera/@Reactor/step.m, Cantera/matlab/cantera/@Reactor/temperature.m, Cantera/matlab/cantera/@Reactor/time.m, Cantera/matlab/cantera/@Reactor/volume.m, Cantera/matlab/cantera/@Reactor/private/reactormethods.cpp, Cantera/matlab/cantera/@Reactor/private/reactormethods.m, Cantera/matlab/cantera/@Solution/Solution.m, Cantera/matlab/cantera/@Solution/clear.m, Cantera/matlab/cantera/@Solution/display.m, Cantera/matlab/cantera/@Solution/set.m, Cantera/matlab/cantera/@Solution/soundspeed.m, Cantera/matlab/cantera/@ThermoPhase/ThermoPhase.m, Cantera/matlab/cantera/@ThermoPhase/atomicMasses.m, Cantera/matlab/cantera/@ThermoPhase/chemPotentials.m, Cantera/matlab/cantera/@ThermoPhase/clear.m, Cantera/matlab/cantera/@ThermoPhase/cp_R.m, Cantera/matlab/cantera/@ThermoPhase/cp_mass.m, Cantera/matlab/cantera/@ThermoPhase/cp_mole.m, Cantera/matlab/cantera/@ThermoPhase/cv_mass.m, Cantera/matlab/cantera/@ThermoPhase/cv_mole.m, Cantera/matlab/cantera/@ThermoPhase/density.m, Cantera/matlab/cantera/@ThermoPhase/elementIndex.m, Cantera/matlab/cantera/@ThermoPhase/elementName.m, Cantera/matlab/cantera/@ThermoPhase/enthalpies_RT.m, Cantera/matlab/cantera/@ThermoPhase/enthalpy_mass.m, Cantera/matlab/cantera/@ThermoPhase/enthalpy_mole.m, Cantera/matlab/cantera/@ThermoPhase/entropies_R.m, Cantera/matlab/cantera/@ThermoPhase/entropy_mass.m, Cantera/matlab/cantera/@ThermoPhase/entropy_mole.m, Cantera/matlab/cantera/@ThermoPhase/eosType.m, Cantera/matlab/cantera/@ThermoPhase/equilibrate.m, Cantera/matlab/cantera/@ThermoPhase/gibbs_RT.m, Cantera/matlab/cantera/@ThermoPhase/gibbs_mass.m, Cantera/matlab/cantera/@ThermoPhase/gibbs_mole.m, Cantera/matlab/cantera/@ThermoPhase/hndl.m, Cantera/matlab/cantera/@ThermoPhase/intEnergy_mass.m, Cantera/matlab/cantera/@ThermoPhase/intEnergy_mole.m, Cantera/matlab/cantera/@ThermoPhase/isIdealGas.m, Cantera/matlab/cantera/@ThermoPhase/massFractions.m, Cantera/matlab/cantera/@ThermoPhase/maxTemp.m, Cantera/matlab/cantera/@ThermoPhase/meanMolarMass.m, Cantera/matlab/cantera/@ThermoPhase/meanMolecularWeight.m, Cantera/matlab/cantera/@ThermoPhase/minTemp.m, Cantera/matlab/cantera/@ThermoPhase/molarDensity.m, Cantera/matlab/cantera/@ThermoPhase/molarMasses.m, Cantera/matlab/cantera/@ThermoPhase/moleFractions.m, Cantera/matlab/cantera/@ThermoPhase/molecularWeights.m, Cantera/matlab/cantera/@ThermoPhase/nAtoms.m, Cantera/matlab/cantera/@ThermoPhase/nElements.m, Cantera/matlab/cantera/@ThermoPhase/nSpecies.m, Cantera/matlab/cantera/@ThermoPhase/ph.m, Cantera/matlab/cantera/@ThermoPhase/pressure.m, Cantera/matlab/cantera/@ThermoPhase/refPressure.m, Cantera/matlab/cantera/@ThermoPhase/set.m, Cantera/matlab/cantera/@ThermoPhase/setDensity.m, Cantera/matlab/cantera/@ThermoPhase/setMassFractions.m, Cantera/matlab/cantera/@ThermoPhase/setMoleFractions.m, Cantera/matlab/cantera/@ThermoPhase/setPressure.m, Cantera/matlab/cantera/@ThermoPhase/setState.m, Cantera/matlab/cantera/@ThermoPhase/setState_HP.m, Cantera/matlab/cantera/@ThermoPhase/setState_SP.m, Cantera/matlab/cantera/@ThermoPhase/setState_UV.m, Cantera/matlab/cantera/@ThermoPhase/setTemperature.m, Cantera/matlab/cantera/@ThermoPhase/speciesIndex.m, Cantera/matlab/cantera/@ThermoPhase/speciesName.m, Cantera/matlab/cantera/@ThermoPhase/speciesNames.m, Cantera/matlab/cantera/@ThermoPhase/temperature.m, Cantera/matlab/cantera/@ThermoPhase/thermo_hndl.m, Cantera/matlab/cantera/@ThermoPhase/private/phase_get.m, Cantera/matlab/cantera/@ThermoPhase/private/phase_set.m, Cantera/matlab/cantera/@ThermoPhase/private/thermo_get.m, Cantera/matlab/cantera/@ThermoPhase/private/thermo_set.m, Cantera/matlab/cantera/@Transport/Transport.m, Cantera/matlab/cantera/@Transport/binDiffCoeffs.m, Cantera/matlab/cantera/@Transport/hndl.m, Cantera/matlab/cantera/@Transport/mixDiffCoeffs.m, Cantera/matlab/cantera/@Transport/multiDiffCoeffs.m, Cantera/matlab/cantera/@Transport/thermalConductivity.m, Cantera/matlab/cantera/@Transport/thermalDiffCoeffs.m, Cantera/matlab/cantera/@Transport/viscosity.m, Cantera/matlab/cantera/@Transport/private/newTransport.cpp, Cantera/matlab/cantera/@Transport/private/trans_get.m, Cantera/matlab/cantera/@Transport/private/trans_methods.cpp, Cantera/matlab/cantera/@Wall/Wall.m, Cantera/matlab/cantera/@Wall/area.m, Cantera/matlab/cantera/@Wall/install.m, Cantera/matlab/cantera/@Wall/ready.m, Cantera/matlab/cantera/@Wall/setArea.m, Cantera/matlab/cantera/@Wall/setExpansionRateCoeff.m, Cantera/matlab/cantera/@Wall/setHeatTransferCoeff.m, Cantera/matlab/cantera/@Wall/setThermalResistance.m, Cantera/matlab/cantera/@Wall/wall_hndl.m, 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Cantera/python/Cantera/ThermoPhase.py, Cantera/python/Cantera/Transport.py, Cantera/python/Cantera/XML.py, Cantera/python/Cantera/gases.py, Cantera/python/Cantera/importFromFile.py, Cantera/python/Cantera/interp.py, Cantera/python/Cantera/refine.py, Cantera/python/Cantera/rxnpath.py, Cantera/python/Cantera/schem.py, Cantera/python/Cantera/set.py, Cantera/python/Cantera/solids.py, Cantera/python/Cantera/solution.py, Cantera/python/Cantera/solve.py, Cantera/python/Cantera/stoich.py, Cantera/python/Cantera/tecplot.py, Cantera/python/Cantera/units.py, Cantera/python/examples/flame1.py, Cantera/python/examples/flame2.py, Cantera/python/examples/isentropic.py, Cantera/python/examples/reactor1.py, Cantera/python/examples/reactor2.py, Cantera/python/examples/rxnpath1.py, Cantera/python/examples/rxnpath2.py, Cantera/python/examples/stflame1.py, Cantera/python/examples/stflame2.py, Cantera/python/src/.cvsignore, Cantera/python/src/Makefile.in, Cantera/python/src/cantera.def, 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Cantera/src/stringUtils.cpp, Cantera/src/stringUtils.h, Cantera/src/surfKinetics.cpp, Cantera/src/surfKinetics.h, Cantera/src/surfacePhase.h, Cantera/src/transportModels.h, Cantera/src/units.h, Cantera/src/updaters.h, Cantera/src/utilities.h, Cantera/src/vec_functions.h, Cantera/src/xml.cpp, Cantera/src/xml.h, Cantera/src/converters/.cvsignore, Cantera/src/converters/CKParser.cpp, Cantera/src/converters/CKParser.h, Cantera/src/converters/CKReader.cpp, Cantera/src/converters/CKReader.h, Cantera/src/converters/Constituent.h, Cantera/src/converters/Element.h, Cantera/src/converters/Group.h, Cantera/src/converters/Makefile.in, Cantera/src/converters/Reaction.cpp, Cantera/src/converters/Reaction.h, Cantera/src/converters/RxnSpecies.h, Cantera/src/converters/Species.h, Cantera/src/converters/atomicWeightDB.cpp, Cantera/src/converters/ck2ctml.cpp, Cantera/src/converters/ck2ctml.h, Cantera/src/converters/ckr_defs.h, Cantera/src/converters/ckr_utils.cpp, Cantera/src/converters/ckr_utils.h, 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Cantera/src/transport/MultiTransport.cpp, Cantera/src/transport/MultiTransport.h, Cantera/src/transport/TransportBase.h, Cantera/src/transport/TransportFactory.cpp, Cantera/src/transport/TransportFactory.h, Cantera/src/transport/TransportParams.h, Cantera/src/zeroD/.cvsignore, Cantera/src/zeroD/FlowDevice.cpp, Cantera/src/zeroD/FlowDevice.h, Cantera/src/zeroD/Makefile.in, Cantera/src/zeroD/PID_Controller.h, Cantera/src/zeroD/Reactor.cpp, Cantera/src/zeroD/Reactor.h, Cantera/src/zeroD/ReactorBase.cpp, Cantera/src/zeroD/ReactorBase.h, Cantera/src/zeroD/Reservoir.h, Cantera/src/zeroD/Wall.cpp, Cantera/src/zeroD/Wall.h, Cantera/src/zeroD/flowControllers.h, config/.cvsignore, config/Cantera.README, config/config.guess, config/config.h.in, config/config.sub, config/configure, config/configure.in, config/install-sh, data/README, data/inputs/.cvsignore, data/inputs/air.inp, data/inputs/air.xml, data/inputs/argon.inp, data/inputs/argon.xml, data/inputs/elements.xml, data/inputs/gases.xml, 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test_problems/silane_equil/Makefile.in, test_problems/silane_equil/output_blessed.txt, test_problems/silane_equil/runtest, test_problems/silane_equil/silane.xml, test_problems/silane_equil/silane_equil.cpp, tools/.cvsignore, tools/Makefile.in, tools/export, tools/bin/ctupdate.py, tools/bin/finish_install.py, tools/src/.cvsignore, tools/src/Makefile.in, tools/src/ck2ctml.cpp, tools/src/ck2ctml.dsp, tools/src/ctlibsample.mak.in, tools/src/ctsetup.cpp, tools/src/ctsetup.in, tools/src/ctwin, tools/src/makedsp.cpp, tools/src/newdsp.cpp, tools/src/proto.dsp, tools/src/protocvf.dsp, tools/src/protocxx.cpp, tools/src/protocxx.dsp, tools/src/sample.mak.in, tools/src/sample_f90.mak.in, tools/src/validate.cpp, tools/templates/f77/demo.f, tools/templates/f77/demo_ftnlib.cpp, tools/templates/f77/sample.mak.in, tools/testtools/.cvsignore, tools/testtools/Makefile.in, tools/testtools/csvdiff.cpp, tools/testtools/mdp_allo.cpp, tools/testtools/mdp_allo.h, tools/testtools/tok_input_util.cpp, tools/testtools/tok_input_util.h: Initial import. 2003-04-14 10:57 dggoodwin * .cvsignore, INSTALLING, License.rtf, License.txt, Makefile.in, README, config.h, config.h.in, configure, apps/README.txt, apps/MixMaster/.cvsignore, apps/MixMaster/CompositionFrame.py, apps/MixMaster/ControlPanel.py, apps/MixMaster/DataFrame.py, apps/MixMaster/DataGraph.py, apps/MixMaster/Edit.py, apps/MixMaster/ElementFrame.py, apps/MixMaster/GraphFrame.py, apps/MixMaster/__init__.py, apps/MixMaster/config.py, apps/MixMaster/flowpanel.py, Cantera/.cvsignore, Cantera/Makefile.in, Cantera/clib/src/.cvsignore, Cantera/clib/src/Cabinet.h, Cantera/clib/src/Makefile.in, Cantera/clib/src/Storage.cpp, Cantera/clib/src/Storage.h, Cantera/clib/src/clib_defs.h, Cantera/clib/src/ct.cpp, Cantera/clib/src/ct.h, Cantera/clib/src/ctbdry.cpp, Cantera/clib/src/ctbdry.h, Cantera/clib/src/ctfunc.cpp, Cantera/clib/src/ctfunc.h, Cantera/clib/src/ctnum.cpp, Cantera/clib/src/ctnum.h, Cantera/clib/src/ctreactor.cpp, 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include/fortran/ctreactormod.f, include/fortran/ctthermomod.f, include/fortran/cttransportmod.f, include/fortran/ctutilsmod.f, lib/README, test_problems/.cvsignore, test_problems/Makefile.in, test_problems/cxx_ex/.cvsignore, test_problems/cxx_ex/eq1_blessed.csv, test_problems/cxx_ex/eq1_blessed.dat, test_problems/cxx_ex/gri30.inp, test_problems/cxx_ex/gri30.xml, test_problems/cxx_ex/gri30_tran.dat, test_problems/cxx_ex/gri30mod.inp, test_problems/cxx_ex/Makefile.in, test_problems/cxx_ex/kin1_blessed.csv, test_problems/cxx_ex/kin2_blessed.csv, test_problems/cxx_ex/runtest, test_problems/cxx_ex/silane.inp, test_problems/cxx_ex/silane.xml, test_problems/cxx_ex/tr1_blessed.csv, test_problems/cxx_ex/tr2_blessed.csv, test_problems/silane_equil/.cvsignore, test_problems/silane_equil/Makefile.in, test_problems/silane_equil/output_blessed.txt, test_problems/silane_equil/runtest, test_problems/silane_equil/silane.xml, test_problems/silane_equil/silane_equil.cpp, tools/.cvsignore, tools/Makefile.in, tools/export, tools/bin/ctupdate.py, tools/bin/finish_install.py, tools/src/.cvsignore, tools/src/Makefile.in, tools/src/ck2ctml.cpp, tools/src/ck2ctml.dsp, tools/src/ctlibsample.mak.in, tools/src/ctsetup.cpp, tools/src/ctsetup.in, tools/src/ctwin, tools/src/makedsp.cpp, tools/src/newdsp.cpp, tools/src/proto.dsp, tools/src/protocvf.dsp, tools/src/protocxx.cpp, tools/src/protocxx.dsp, tools/src/sample.mak.in, tools/src/sample_f90.mak.in, tools/src/validate.cpp, tools/templates/f77/demo.f, tools/templates/f77/demo_ftnlib.cpp, tools/templates/f77/sample.mak.in, tools/testtools/.cvsignore, tools/testtools/Makefile.in, tools/testtools/csvdiff.cpp, tools/testtools/mdp_allo.cpp, tools/testtools/mdp_allo.h, tools/testtools/tok_input_util.cpp, tools/testtools/tok_input_util.h: Initial revision 2003-04-14 10:11 root * CVSROOT/: checkoutlist, commitinfo, config, cvswrappers, editinfo, loginfo, modules, notify, rcsinfo, taginfo, verifymsg: initial checkin