* 'name' corresponds to the YAML entry
* rename Solution keyword 'phaseid' to 'name' (instead of 'phase_id')
* rename ck2yaml argument '--id' to '--name' (instead of '--phase-id')
* ensure that C++ Phase::m_id is always the same as Phase::m_name
* rename C++ object to 'Solution' (from 'SolutionBase')
* remove 'phaseID' from 'Solution' ('id' remains assigned to 'Phase')
* remove 'type' from C++ object (no polymorphism anticipated)
* assign 'name' to 'Solution' (link back from 'Phase' until deprecated)
* clarify 'phase' as 'phase_id' in Python interface
* address various feedback in review comments
* Clarifies the meaning of ID
* Creates a PEP8 compliant attribute that does not conflict with
a built-in function name that is also consistent with the YAML entry.
* Change associated member function names in C++ SolutionBase
* Deprecate `ID` in Python (to be removed after Cantera 2.5)
* Add Base.h/Base.cpp with definition of SolutionBase
* Link C++ object into Cython interface
* Add unique_name and type attributes to Cython _SolutionBase
This commit implements new methods for SolutionArray:
* `restore_data` can restore data previously exported by `collect_data`
* `read_csv` restores data previously saved by `write_csv`
* unit tests are added for SolutionArray's based on ThermoPhase and PureFluid
* setter for `PureFluid.TPX` property is added to allow for automatic
restoration of consistent thermodynamic data
* alternative to 'TP', 'TX' or 'PX' which may not uniquely describe
a valid thermodynamic state
* add unit test
Further:
* revert unit tests to previous species definitions (some case mis-matches)
* remove non-essential comments
* opt to maintain case-sensitive species maps with lowercase as fallback
* store species information with case sensitive names
* retain lookup for non-case sensitive species names, e.g. Phase::speciesIndex
* implement flag that enforces case sensitive species names as a member
variable of Phase
* add exception handling for species that are not uniquely defined unless case
sensitive (e.g. Cs and CS in nasa.cti if cs is specified and case sensitivity
is not enforced)
* deprecate Phase::species(std::string&)
Solving with auto=True and then solving with auto=False would leave the domain
width check in place, but without the logic for automatically increasing the
domain width, resulting in unexpected solver failures.
* The commit implements saving of data extracted from SolutionArrays
to HDF containers using pandas infrastructure.
* Two methods are introduced: `write_hdf` and `to_pandas`.
* Both methods only work if the pandas module can be imported; an
exception is raised only if the method is called without a working
pandas installation.
