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1087 commits

Author SHA1 Message Date
Bryan W. Weber
0b5a46fe03 Remove execute bit from files that don't need it 2015-08-02 23:06:16 -04:00
Ray Speth
bfb20e1f50 Consistently use vector_fp and vector_int typedefs 2015-08-02 23:06:16 -04:00
Ray Speth
ceefc5ecb0 Consistently use ThermoPhase::RT() 2015-08-02 23:06:16 -04:00
Ray Speth
9cdfd12172 Move definition of polyfit to polyfit.cpp 2015-08-02 23:06:16 -04:00
Ray Speth
acdf9cf0ed Clean up interstitial whitespace 
Remove extra space around operators, between words, etc.
 2015-08-02 23:06:16 -04:00
Ray Speth
6a04193646 Fix un-bracketed if, for, and else statements 2015-08-02 23:06:15 -04:00
Ray Speth
02f9497b20 Remove functions which just explicitly call base class functions 2015-08-02 23:06:15 -04:00
Ray Speth
801334c84e Merge nested if statements 2015-08-02 23:06:15 -04:00
Ray Speth
546eede80c Fix pointer logic errors in initThermoXML 
Affects DebyeHuckel and HMWSoln
 2015-08-02 23:06:15 -04:00
Ray Speth
f90bf978df Use += and -= where appropriate 2015-08-02 23:06:15 -04:00
Ray Speth
e4c45b6429 General whitespace cleanup 
Remove unnecessary blank lines and trailing whitespace. Replace tabs with
spaces.
 2015-08-02 23:06:15 -04:00
Ray Speth
619cd20f14 Fix badly-formatted else/else if/catch clauses 2015-08-02 23:06:15 -04:00
Ray Speth
d24dfea036 Remove unnecessary public/private/protected labels 2015-08-02 23:06:15 -04:00
Ray Speth
f219b49e63 Remove unnecessary newlines in function signatures 2015-08-02 23:06:15 -04:00
Ray Speth
d086be8d3d Eliminate do-while loops in favor of regular while loops 2015-08-02 23:06:15 -04:00
Ray Speth
a6e390dfc5 Standardize always-true while loop condition to "true" 2015-08-02 23:06:15 -04:00
Ray Speth
187fd27cef Remove unnecessary use of (void) 2015-08-02 23:06:14 -04:00
Ray Speth
09207eacfb Eliminate use of 'memset' 2015-08-02 23:06:14 -04:00
Ray Speth
c3c80f79fb Remove extraneous parentheses 2015-08-02 23:06:14 -04:00
Ray Speth
89c751f217 Fix compilation problems when debug_verbose=y 2015-08-02 23:06:14 -04:00
Ray Speth
d8772f261b [Reactor] Cannot add sensitivity reactions to initialized ReactorNet 
Before, the attempt to add the reaction was silently ignored. Now, this raises
an exception.
 2015-07-21 14:54:13 -04:00
Ray Speth
6cc5652de6 Remove commented-out code 2015-07-20 17:20:46 -04:00
Ray Speth
de005c083e Eliminate VCS_DATA_PTR macro 2015-07-20 16:17:31 -04:00
Ray Speth
bf2ceed60e Remove some leftover debugging ifdefs 2015-07-20 15:47:17 -04:00
Ray Speth
c49c969184 [Kinetics] Remove unused code for reactant and product "groups" 2015-07-20 14:04:53 -04:00
Ray Speth
4f1250ef53 [Kinetics] Remove unneeded variables for reaction equation 
Extract this data from the reaction objects directly as needed.
 2015-07-20 13:53:47 -04:00
Ray Speth
62f2af5534 [Kinetics] Eliminate unnecessary variable m_rxntype 2015-07-20 13:01:05 -04:00
Ray Speth
f623e44d32 [Kinetics] Eliminate unnecessary m_rrxn and m_prxn variables 
This information can be extracted from the Reaction objects as-needed.
 2015-07-20 12:56:56 -04:00
Ray Speth
761f54f241 Eliminate unnecessary counter variable Kinetics::m_ii 2015-07-16 15:37:41 -04:00
Ray Speth
e21a7ce7d7 Fix incorrect index check in GeneralSpeciesThermo::reportParams 
The SpeciesThermoInterpType no longer knows the species index, so
it isn't actually returned by the reportParameters function.
 2015-07-16 12:28:46 -04:00
Ray Speth
c08c365ebb Remove unimplemented option to use QR factorization in BandMatrix 2015-07-16 10:52:42 -04:00
Ray Speth
e8292d387e Fix definition of elemental mole fraction 
The elemental mole fractions should be invariant under composition changes which
conserve atoms.
 2015-07-16 10:41:39 -04:00
Ray Speth
97b32069cf Remove leftover "fenv" cruft 2015-07-15 12:46:48 -04:00
Ray Speth
6a9dd7f9d6 Remove unused 'csvdiff' application 2015-07-15 12:20:22 -04:00
Ray Speth
f1f10b6526 Remove unused, deprecated code marked for removal after Cantera 2.2 2015-07-15 12:08:50 -04:00
Ray Speth
ad4ed9e065 Remove unnecessary printing from SurfPhase::setCoverages 2015-07-15 11:40:13 -04:00
Ray Speth
d4299fc6da [Test] Fix VCS-LiSi test to not use deprecated "testProb" constructor 2015-07-15 11:35:22 -04:00
Ray Speth
546289f737 Remove deprecated code with functional alternatives 2015-07-13 18:59:09 -04:00
Ray Speth
9e8b8e4f63 Fix incorrect references to SpeciesThermo from VPSSMgr 2015-07-13 18:48:56 -04:00
Ray Speth
d373e0751e Remove unnecessary explicit specification of namespace Cantera 2015-06-24 14:45:55 -04:00
Ray Speth
140da430c0 Check for non-existent species in setMass/MoleFractionsByName 2015-06-24 13:05:28 -04:00
Ray Speth
c4bb938b1b [Equil] Hide verbose output at default log level 2015-06-24 13:05:28 -04:00
Ray Speth
0590b2cda8 [Reactor] Deprecate possibly-ambiguous names in componentIndex 
Resolves #274.
 2015-06-22 18:12:05 -04:00
Ray Speth
6f7241b08b Remove dead code from class Application 2015-06-21 19:01:15 -04:00
Ray Speth
be24e9daf1 [Reactor] Move reactor contents check into ReactorBase::contents 
The check introduced in f6f868fe28 takes place too late, as the pointer to
ReactorBase.m_thermo has already been dereferenced at this point. Most compilers
let this pass, but it is techincally incorrect.
 2015-06-18 17:51:46 -04:00
Ray Speth
f6f868fe28 [Reactor] Check for Reactor contents before installing FlowDevice 
Fixes #279.
 2015-06-18 14:37:54 -04:00
Bryan W. Weber
60827267b7 Add MATLAB interface to the setState_RP function 2015-06-15 17:47:37 -04:00
Bryan W. Weber
5d215b7e86 Add base class functions to set density and pressure simultaneously 
They have the names setState_RP, setState_RPX, and setState_RPY. These
base class functions mirror the TP, TPX, TPY set, except that RP is not
implemented, because it depends on the EOS of the system. We cannot use
the normal setPressure because it sets the state by calculating the
density, but RP will specify the density.
 2015-06-15 17:46:51 -04:00
Ray Speth
484eff996b Use short form of cantera_version when looking for data directory 2015-06-14 19:51:00 -04:00
Ray Speth
7f847c3877 [SCons] Miscellaneous cleanup of SConstruct/SConscript files 2015-06-13 23:29:58 -04:00