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72 commits

Author SHA1 Message Date
Ray Speth
baade7fbad Link Python and Matlab modules against shared BLAS/LAPACK when necessary 2012-03-05 20:47:08 +00:00
Ray Speth
346268f09c Matlab extension compiled directly by SCons without invoking Matlab 2012-03-05 20:46:57 +00:00
Ray Speth
ebc6ef1e47 Improved error message printed when ct2ctml fails 
Now we actually print the contents of the log file.
 2012-03-05 20:46:52 +00:00
Ray Speth
2fa2d98171 Exceptions generate less mysterious error messages in a few places 2012-03-05 20:46:46 +00:00
Ray Speth
9cdf079d2d Added templated generic exception handler for clib functions 2012-03-05 20:46:34 +00:00
Ray Speth
54efbaa320 Rewrote exception handling to be more general and more explicit 
CanteraError inerits from std:exception, so now it has a what() method
that is used to print a message describing the exception. Adding an
exception to the Cantera error stack now requires explicitly calling
the .save() method.
 2012-03-05 20:45:56 +00:00
Ray Speth
e3b5ee802e Contents of misc.cpp relocated 
The functions formerly defined in misc.cpp are now defined in the
source files corresponding to the header files where they were
declared.
 2012-03-05 20:45:31 +00:00
Ray Speth
8150f49c2c Simplified adding SCons build and install targets 2012-03-05 20:45:20 +00:00
Ray Speth
21100f1cb0 Fixed Jacobian evaluation problems in AxiStagnFlow::eval 2012-03-05 20:44:46 +00:00
Ray Speth
38322d720a Fixed indexing problems when evaluating Jacobian for 1D simulations 2012-03-01 16:56:36 +00:00
Ray Speth
70cdd1be3e Made linking to Sundials libraries more consistent 2012-03-01 00:44:50 +00:00
Ray Speth
5c5bff7d79 Removed unused function 'smlequ' 2012-03-01 00:44:38 +00:00
Ray Speth
6a9f3ea892 Marked some unused functions as deprecated 2012-03-01 00:44:31 +00:00
Ray Speth
657ed19371 Fixed warnings related to printf/sprintf 2012-02-28 19:02:00 +00:00
Ray Speth
ffb7049a74 Marked a few unused member variables as deprecated 2012-02-28 19:01:50 +00:00
Ray Speth
e487d95054 Fixed a few "unused variable" warnings 2012-02-28 19:01:43 +00:00
Ray Speth
8877f95e3c Modified some compiler warning settings 2012-02-28 19:01:35 +00:00
Ray Speth
6195b488c2 Allow compilation of the Fortran 90 module with MinGW 2012-02-27 18:16:00 +00:00
Ray Speth
27314703a0 Fixed qualifiers for functions that are part of the Cantera DLL 2012-02-27 18:15:47 +00:00
Ray Speth
981a04a325 Split Kinetics::kineticsSpeciesIndex into two separate functions 2012-02-27 18:15:41 +00:00
Ray Speth
1e5d4d50e1 Fixed an array indexing error in tpx::Water::ldens 2012-02-27 18:15:27 +00:00
Ray Speth
236756fbf0 Removed rogue tabs in the C++ source code 2012-02-27 18:15:02 +00:00
Ray Speth
8bce9d7332 Fixed compiler warnings revealed by MinGW 2012-02-27 18:14:43 +00:00
Ray Speth
7f12656925 Fixed some self-assignment errors 2012-02-27 18:14:35 +00:00
Ray Speth
b955395ed1 Skip cast from size_t to int when calling int2str 2012-02-27 18:14:17 +00:00
Ray Speth
af6303a67e Removed class ArrayViewer (use Array2D instead) 2012-02-27 18:14:08 +00:00
Ray Speth
6cc7f491a6 Removed some pointless comments 2012-02-27 18:14:00 +00:00
Ray Speth
6cb4bd93ce Cleaned up whitespace in all Python files using reindent.py 
4 spaces per indentation level, no tabs, no trailing whitespace,
and a single newline at end of each file.
 2012-02-27 18:13:05 +00:00
Ray Speth
8b7dab08bd Added checks to avoid computing bogus column pointers for matrix types 2012-02-27 18:12:29 +00:00
Ray Speth
3f3df652c6 Fixed a bug in the assignment operator of class vcs_VolPhase 
m_numSpecies was used before being updated, which could lead to a
segmentation fault when resizing m_formulaMatrix to be M-by-zero.
 2012-02-27 18:12:24 +00:00
Ray Speth
8f4f72369e Use the associated Cabinet to look up an item's index 
This allowed removal the m_index member and associated methods
of the ThermoPhase, Kinetics, and Transport classes.
 2012-02-27 18:12:13 +00:00
Ray Speth
3b1694fdfb Class Storage has been eliminated in favor of class Cabinet 2012-02-27 18:12:00 +00:00
Ray Speth
2da9603a15 Streamlined interface to class Cabinet 2012-02-27 18:11:47 +00:00
Ray Speth
3648bfef39 Use of deprecated functions generates compiler warnings 2012-02-27 18:11:39 +00:00
Ray Speth
f1e807d314 Moved global variables from tpx namespace into class Substance 
This fixes failures in the pureFluid test on OSX with certain
compilier optimizations enabled.
 2012-02-27 18:11:28 +00:00
Ray Speth
8c23a12152 Removed attempt to get PYTHON_CMD from setup_cantera 
This code didn't work because changes in the environment of the
system(...) call aren't propagated back to the caller.
 2012-02-24 03:17:39 +00:00
Ray Speth
1ece5bcc3d Some changes to make SCons faster 2012-02-23 21:25:20 +00:00
Ray Speth
b6376f1e00 Include Sundials in the Cantera Python module when necessary 2012-02-23 21:25:13 +00:00
Ray Speth
db8e338e52 Fixed size_t issues in CVodesIntegrator 2012-02-23 21:24:53 +00:00
Ray Speth
ee0fe68e16 Fixes for building shared libraries on OS X. 2012-02-23 21:24:48 +00:00
Ray Speth
b203b88085 IDA_Solver requires Sundials 2.4 2012-02-23 21:24:42 +00:00
Ray Speth
bbb3b4cbfa Fixed module include directory for old versions of gfortran 2012-02-23 21:24:38 +00:00
Ray Speth
c7078a311a Replaced "inList" with std::find 2012-02-22 00:17:50 +00:00
Ray Speth
437294ae00 Removed previously-deprecated array_fp typedef 2012-02-22 00:16:22 +00:00
Ray Speth
18bce3bc62 Fixed lines ending with doubled semicolon. 2012-02-22 00:16:10 +00:00
Ray Speth
055b6e5710 Fixed issues compiling with MinGW using SCons 2012-02-21 16:06:07 +00:00
Ray Speth
28270820a5 Use std::swap instead of homegrown alternatives 2012-02-21 16:05:53 +00:00
Ray Speth
35429de71c Fixed a bunch of spelling errors in the documentation and comments 2012-02-21 16:04:09 +00:00
Ray Speth
fe8a5d49a8 Use std::min and std::max instead of homegrown alternatives 2012-02-21 16:03:32 +00:00
Ray Speth
30d233474a Use std::min and std::max instead of preprocessor macros 2012-02-21 16:03:09 +00:00