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1549 commits

Author SHA1 Message Date
Ray Speth
f6df8f31b3 [TPX] Move function implementations out of Sub.h 2016-10-19 17:40:50 -04:00
BangShiuh
6d5e28ec46 [1D] Use c_offset_Y instead of literal value "4" 2016-10-19 17:40:04 -04:00
Ray Speth
478a62d2af [Thermo] Make tolerances used in state setters more consistent 2016-10-19 12:55:18 -04:00
Ray Speth
5b1a4a60bb [Thermo] Fix silent failures in HP/UV/SV/SP convergence 
In cases where the specified state was non-physical (i.e. corresponded to a
negative temperature), the iteration would exit when the temperature reached a
small enough value. Computing the error in temperature relative to the current
temperature avoids this problem.

Fixes #264
 2016-10-19 10:58:22 -04:00
Ray Speth
940b7ea01f [Matlab] Always allocate string buffers of an appropriate size 
Never use fixed size buffers which can force content to be truncated

Resolves #118.
 2016-10-18 11:21:42 -04:00
Ray Speth
8a9eabeeac [clib] Add buffer length argument to all functions returning strings 
If the buffer is not long enough, the string is truncated and the return value
is the required buffer length. Otherwise, the return value is 0.
 2016-10-18 11:21:42 -04:00
Ray Speth
5f0e20bf93 [clib] Rename some functions to increase consistency 2016-10-17 19:15:38 -04:00
Ray Speth
100d6db87b [clib] Combine "phase_" and "th_" prefixes as "thermo_" 2016-10-17 19:15:38 -04:00
Ray Speth
bdda7b5eaf [clib] Remove some redundant/unusable/unnecessary functions 2016-10-17 19:15:36 -04:00
Ray Speth
a8c6158543 [Matlab] Remove partial implementations of unneeded methods 2016-10-17 18:42:27 -04:00
Ray Speth
b51c1b8e4e [clib] Fix const-ness of clib function arguments 2016-10-15 20:50:15 -04:00
Ray Speth
40630a3ab4 Fix const-ness of some function arguments 2016-10-15 20:50:15 -04:00
g3bk47
e83b095c3a [Kinetics] added const version of Kinetics::reaction 2016-10-15 18:24:35 -04:00
Ray Speth
6ca9dc2cc3 [Kinetics] Remove unused m_finalized member variable 2016-10-13 18:40:03 -04:00
Ray Speth
0b5e209b40 [Kinetics] Remove unused private members of class Kinetics 2016-10-13 18:40:03 -04:00
Ray Speth
f17750e483 Make species names case-preserving instead of case-sensitive 
This improves interoperability when working with mechanisms which use differing
conventions for naming species using uppercase or lowercase.
 2016-10-13 18:40:03 -04:00
Ray Speth
deee889baf [clib] Make clib headers public 2016-10-13 18:40:03 -04:00
Ray Speth
ae6e7fdff7 Add license/copyright info to files that were missing it 2016-10-10 22:48:23 -04:00
Ray Speth
ecbfecd7fd Replace existing copyright notices with uniform copyright/license info 2016-10-10 22:19:01 -04:00
Ray Speth
e332fcbba2 [clib] Make clib actually usable as a C (not C++) interface 
- Cannot include any C++ headers or use C++ types (e.g. 'bool')
- Functions arguments cannot have default values
- "extern C" needs to be wrapped by "#ifdef __cplusplus"
 2016-09-19 18:48:40 -04:00
Ray Speth
11f6c2f993 Consolidate duplicate species checks in Phase::addSpecies 2016-09-10 21:45:24 -04:00
Ray Speth
178b452a49 [Transport] Automatically reinitialize after change in number of species 
This makes it possible for GasTransport objects to work reasonably well with
ThermoPhase objects that have had species added to them. The main changes
required are to make the initialization functions idempotent.
 2016-09-09 22:50:17 -04:00
Ray Speth
46b97beee7 [Transport] Restore temperature after fitting properties 2016-09-09 22:50:17 -04:00
Ray Speth
85e2e9968b [Thermo] Deprecate RedlichKisterVPSSTP::Vint 2016-09-08 17:21:20 -04:00
Ray Speth
340c1bf60a Remove some unused variables 2016-09-08 17:21:20 -04:00
Ray Speth
abf71c4cb1 Allow non-positive atomic weights for custom elements 2016-08-30 20:28:35 -04:00
Ray Speth
0bd88927f5 [Equil] Fix ElemRearrange when unused elements are present 
The solver could get stuck in an infinite loop when there were elements that
were not used in any species.
 2016-08-17 21:15:34 -04:00
Bryan W. Weber
8ada40f0be
[Matlab] Add interface to setChemistry 2016-08-12 11:53:53 -04:00
Bryan W. Weber
c344b4c0f8
Add methods Reactor::setChemistry and chemistryEnabled 
These functions mirror the setEnergy and energyEnabled methods.
The enableChemistry and disableChemistry methods are deprecated.
 2016-08-12 10:54:58 -04:00
Ray Speth
ee7c4ed463 [Kinetics] Remove dead code from InterfaceKinetics 2016-07-30 23:49:38 -04:00
Ray Speth
4582e724ee Eliminate compiler warnings issued by Visual Studio 2015 2016-07-30 23:09:17 -04:00
Ray Speth
ac7a9bd238 Deprecate copy constructors for eventually-noncopyable objects 
The following classes (and their children) will be non-copyable and
non-assignable after Cantera 2.3:
  - ThermoPhase
  - Kinetics
  - Transport
  - Species
  - SpeciesThermoInterpType
  - MultiSpeciesThermo
  - VPSSMgr
  - PDSS
  - ResidJacEval
  - RootFind
 2016-07-29 18:57:29 -04:00
Ray Speth
64983aaf16 Remove some unnecessary copy constructors and assignment operators 
The implicitly-defined copy constructors and assignment operators work fine for
these classes.
 2016-07-29 18:39:45 -04:00
Ray Speth
fe15a4fe9c [Base] Make Application::Messages non-copyable 2016-07-29 15:05:52 -04:00
Ray Speth
e851e5e9d8 [Kinetics] Fix initialization of use_motz_wise_correction 2016-07-29 15:05:52 -04:00
Ray Speth
af3de9aa4d [Numerics] Fix BandMatrix assignment operator 2016-07-29 15:05:52 -04:00
Ray Speth
dac5345b56 [Base] Move CANTERA_DATA environment variable up in search path 
The paths added from the CANTERA_DATA environment variable should be searched
before hard-coded paths which are determined based on the installation location.
 2016-07-29 11:30:56 -04:00
Ray Speth
f733fac104 [Kinetics] Deprecate InterfaceKinetics::checkPartialEquil 2016-07-28 22:38:05 -04:00
Ray Speth
a8bf1aa628 [Kinetics] Remove unused members of InterfaceKinetics 2016-07-28 22:38:05 -04:00
Ray Speth
7f121a9270 [Reactor] Use setCoveragesNoNorm when evaluating ReactorSurface 2016-07-28 22:38:05 -04:00
Ray Speth
1e5eb8c871 [Kinetics] Add option for Motz & Wise correction to sticking reactions 2016-07-28 18:38:40 -04:00
Ray Speth
593ab8a573 [Kinetics] Refactor handling of sticking reactions 2016-07-28 11:52:46 -04:00
Ray Speth
908e620325 [SCons] Generate versioned shared objects for cantera_shared.so 
See #318.
 2016-07-25 14:42:45 -04:00
Ray Speth
9b318f3c90 [SCons] Always link cantera_shared to its dependencies 
This is not strictly required on Linux, but it doesn't hurt.

See #318.
 2016-07-25 14:42:45 -04:00
Ray Speth
9a309ee410 [Equil] Deprecate some unused VCS-related functions 2016-07-22 13:51:29 -04:00
Ray Speth
ba3a0ee3e9 [Equil] Deprecate broken version of VCS phase stability check feature 
Resolves #331.
 2016-07-22 13:51:16 -04:00
Ray Speth
e2d7e178b3 [SCons/Matlab] Link statically to libstdc++ on Linux 
Matlab 2016a now uses some C++11 features, and symbols included in some of the
Matlab libraries conflict with the versions from system libraries that Cantera
is compiled with and expects to find, resulting in difficult-to-diagnose memory
errors.
 2016-07-13 17:11:34 -04:00
Ray Speth
0d7cc10f99 [Doc] Fix some Doxygen warnings 2016-07-07 23:37:03 -04:00
Ray Speth
bd8a5d0bc9 [Transport] Replace numerical constants for Transport types with strings 2016-07-07 22:52:25 -04:00
Ray Speth
45099255de Deprecate Factory pointer argument to "newFoo" convenience functions 2016-07-07 21:36:11 -04:00