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863 commits

Author SHA1 Message Date
Ray Speth
84ede11e6a Remove unimplemented method SimpleTransport::updateViscosities_C 2016-02-02 23:14:35 -05:00
Bryan W. Weber
97697e09e1 Overwritten -> Overridden 2016-01-25 13:14:50 -05:00
Bryan W. Weber
63cfed1503 Add functions to set property pairs specified in Sub.cpp 
Add functions to set the unimplemented property pairs specified
in the Substance::Set function of Sub.cpp
 2016-01-25 13:07:34 -05:00
Bryan W. Weber
31316b7079 Switch PureFluidPhase to use double instead of doublereal 2016-01-25 13:07:34 -05:00
Bryan W. Weber
9970b4bcc5 Fix typo in ThermoPhase.h 2016-01-25 13:07:34 -05:00
Bryan W. Weber
28e8fa1d2d Whitespace fixup in comments in ThermoPhase.h 2016-01-25 13:07:34 -05:00
Bryan W. Weber
c324386fb2 Add functions to get more information about elements. 
Add functions to get the atomic number, name, symbol, and weight
of elements looked up by the atomic number, name, or symbol.
 2016-01-22 18:18:43 -05:00
Bryan W. Weber
f3bc7a5d5b Replace LookupWtElements with getElementWeight function 
Deprecate LookupWtElements. Also split the atomic weights
database into one for named elements and for named isotopes.
 2016-01-22 18:18:42 -05:00
Ray Speth
0703770638 [Python] Regularly flush stdout when printing from C++ 
This prevents excessive output buffering when output is being redirected and the
only source of printing is Cantera's c++ functions, e.g. when running the 1D
solver.
 2015-12-15 11:41:54 -05:00
Ray Speth
4887775109 Eliminate unnecessary counter member variables 2015-12-01 15:54:55 -05:00
Ray Speth
1cc0d42988 [Test] Move tests for WaterPropsIAPWSphi to gtest suite 
Remove test-related functions from the implementation.
 2015-11-24 10:59:14 -05:00
Ray Speth
b4a1fb2db1 [SCons/Numerics] Use ext/sundials if system Sundials not installed 2015-11-23 16:53:20 -05:00
Ray Speth
6885edb8f8 Remove checks for NO_FTN_STRING_LEN_AT_END 
This variable is never defined (and would not work correctly even if it were).
 2015-11-18 11:56:40 -05:00
Ray Speth
e58bd09859 Eliminate debug_verbose option and DEBUG_MODE macro 
Vebose printing can always be enabled at runtime by setting flags on various
classes.
 2015-11-18 11:02:30 -05:00
Ray Speth
ee95c60813 Simplify error handling to eliminate need for global error stack 
All of the functions for manipulating the global error stack
(CanteraError::save, setError, showErrors, etc.) are deprecated. The ability to
store an error is retained only for use in the C and Fortran interfaces so that
the last error message can be retrieved after a function returns an error code.
 2015-11-16 19:50:55 -05:00
Ray Speth
eb8695dffa Remove unnecessary overrides of cv_mole 2015-11-15 17:00:46 -05:00
Ray Speth
8a5bad1e70 Eliminate lowercase 'l' as a variable name 2015-11-13 21:38:43 -05:00
Ray Speth
f79419cc49 Remove abandoned header file 'solvers.h' 2015-11-12 15:40:50 -05:00
Ray Speth
f6e2f0db73 Remove accidentally-added header file 2015-11-12 15:39:46 -05:00
Ray Speth
5e69a9949a Use ThermoPhase::RT() where convenient 2015-11-12 15:36:17 -05:00
Ray Speth
0d0c96257b [Thermo] Remove unnecessary override of getChemPotentials_RT 2015-11-12 15:15:48 -05:00
Ray Speth
f6d19ccd59 [Thermo] Remove unnecessary overrides of VPStandardStateTP methods 
setPressure, setTemperature, and setState_TP are all implemented generally in
VPStandardStateTP. The specialization in child classes is always handled in
calcDensity().
 2015-11-12 15:04:45 -05:00
Ray Speth
a9379e6f71 [Thermo] Remove unimplemented versions of setToEquilState 2015-11-12 12:42:46 -05:00
Ray Speth
ac9dfa055c [Thermo] Synchronize Mixture/Multiphase state before printing report 
Do not assume that the states of the individual ThermoPhase objects still
correspond to the state of the mixture object. See #306.
 2015-11-12 12:42:35 -05:00
Ray Speth
94185c7fbd Miscellaneous Doxygen doc and comment cleanup 2015-11-12 12:22:09 -05:00
Ray Speth
0540cf26d0 Clean up Doxygen docs and comments in Reactor classes 2015-11-12 11:41:34 -05:00
Ray Speth
34ff39e3df Clean up Doxygen docs and comments in OneD classes 2015-11-12 11:41:34 -05:00
Ray Speth
75d9ef93c5 Clean up Doxygen docs and comments for numerics classes 2015-11-12 11:41:34 -05:00
Ray Speth
0c8bf1fd08 Clean up Doxygen docs and comments for Transport classes 2015-11-12 11:41:34 -05:00
Ray Speth
fe4035647f Clean up remaining Thermo comments 2015-11-12 11:41:34 -05:00
Ray Speth
f8b12adef4 Clean up comments in 'base' source and header files 2015-11-09 19:35:52 -05:00
Ray Speth
5a0a6b855c Clean up Doxygen comments in VPSSMgr and descendants 2015-11-09 17:59:22 -05:00
Ray Speth
cd1f1fd5ac [Doc] Clean up Doxygen documentation for ThermoPhase classes 
Remove redundant documentation from overloaded methods which does not add any
additional information.

Reformat to to make indentation and line lengths more consistent.
 2015-11-09 17:59:22 -05:00
Ray Speth
78b471fbf9 Clean up doxygen comments for SpeciesThermoInterpType classes 2015-11-09 17:59:22 -05:00
Ray Speth
75b0c71044 Clean up comments in Kinetics 2015-11-09 17:59:22 -05:00
Ray Speth
5bf3b0fc67 Clean up comments in other equilibrium-related classes 2015-11-09 17:59:22 -05:00
Ray Speth
618c485c55 Clean up comments in VCS equilibrium solver 2015-11-09 17:34:46 -05:00
Ray Speth
4382ae6c85 Clean up comments in Thermo class source files 2015-11-09 17:34:46 -05:00
Ray Speth
70fe821c19 Deprecate FuncEval::getInitialConditions and related functions 2015-11-06 14:40:48 -05:00
Thomas Fiala
16ab7dff51 [Reactor] Implement functions getState for reactors and reactor networks 
These are simpler forms of getInitialConditions.
 2015-11-03 14:34:28 -05:00
imitrichev
f7a0e14f3e Remove unused field m_logA from class SurfaceArrhenius 2015-10-25 15:41:59 -04:00
imitrichev
40e09043bc Added methods to InterfaceKinetics to get effective rate parameters 
Effective rate parameters are used in SurfaceArrhenius reactions.

Resolves #297.
 2015-10-25 15:41:31 -04:00
Ray Speth
87aaa6ad1e Use math functions from C++11 standard library 2015-10-19 13:14:40 -04:00
Ray Speth
0542e694a9 [Thermo] Merge classes StoichSubstance and StoichSubstanceSSTP 
Use the implementation of StoichSubstanceSSTP (descended from
SingleSpeciesTP) but change the name to StoichSubstance.
 2015-10-19 00:17:40 -04:00
Ray Speth
0647823ada Replace DATA_PTR macro with calls to data() 2015-10-17 18:58:50 -04:00
Ray Speth
91d3002df1 Make use of "make_shared" where possible 2015-10-17 18:58:50 -04:00
Ray Speth
f9375e1a09 Use locks/mutexes from the standard library instead of Boost.Thread 
This eliminates the need to link against any of the compiled Boost libraries,
and means that we can always build in thread-safe mode
 2015-10-17 18:58:50 -04:00
Ray Speth
a03f370cfd Make use of emplace and emplace_back methods 2015-10-14 18:45:23 -04:00
Ray Speth
c3a16ec1fb Update AssertThrowMsg and AssertFinite to use cppformat 2015-10-14 18:45:23 -04:00
Ray Speth
fb4eece9f8 Use std::unique_ptr instead of raw pointers where appropriate 2015-10-14 18:45:23 -04:00