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328 commits

Author SHA1 Message Date
Ray Speth
64bfdcc952 Deprecate support for Sundials 2.2 and 2.3. 2013-06-05 17:09:30 +00:00
Ray Speth
b888df70c4 Clean up Doxygen docs for some liquid transport related classes 2013-06-05 17:09:21 +00:00
Ray Speth
d253fc0d63 Eliminate redundant standard library includes 2013-06-05 17:08:13 +00:00
Ray Speth
be1e95576e Resolve some Doxygen warnings 2013-06-05 03:09:13 +00:00
Ray Speth
f75ba112f9 Clean up Doxygen docs for 1D simulation classes 2013-06-05 03:09:03 +00:00
Ray Speth
00da5bead5 Remove some dead code 2013-06-03 22:17:19 +00:00
Ray Speth
8d004658d7 Update Doxygen docs for other Reactor-related classes 2013-06-03 22:17:12 +00:00
Ray Speth
5a94876c91 Update Doxygen docs for class ReactorBase and descendants 2013-06-03 22:17:05 +00:00
Ray Speth
5c2b5cbde0 Update Doxygen docs for class ReactorNet 
Adding a docstring for the class means this class is finally included in the
Doxygen-generated documentation.
 2013-06-03 22:17:01 +00:00
Ray Speth
0fc6861892 Clean up Doxygen docs for LiquidTranInteraction and descendants 2013-06-03 22:16:52 +00:00
Ray Speth
6a1ebcd9d7 Clean up Doxygen docs for TransportParams and descendants 2013-06-03 22:16:46 +00:00
Ray Speth
a8fea51046 Clean up Doxygen docs for TransportFactory 2013-06-03 22:16:41 +00:00
Ray Speth
098a87cdcd Clean up Doxygen documentation for class Transport and descendants 2013-06-03 22:16:29 +00:00
Ray Speth
f8ac8ea7c3 Remove the DEPRECATED macro 
This macro was not a reliable way of marking deprecated features. Future
deprecation warnings will be issued at runtime using the warn_deprecated
function.
 2013-05-31 15:56:11 +00:00
Ray Speth
c1cfdffccc Add "warn_deprecated" function 
This function can be used for issuing runtime deprecation warnings
 2013-05-31 15:56:06 +00:00
Ray Speth
e059b5c60c Eliminate unnecessary use of reinterpret_cast 2013-05-31 15:55:48 +00:00
Ray Speth
1ed172a4d4 [Kinetics] Lazy evaluation of temperature-dependent terms in rate expression 
This interacts well with the new formulations for the Reactor governing
equations where T is an independent variable, which means that the
temperature-dependent terms do not need to be updated when computing the
Jacobian terms involving derivative with respect to composition.
 2013-05-29 00:11:52 +00:00
Ray Speth
190c4bf8ce Cleaned up Doxygen documentation in other "numerics" classes 2013-05-29 00:11:40 +00:00
Ray Speth
eadf4e3fdd Cleaned up Doxygen documentation for Sundials wrapper classes 2013-05-29 00:11:32 +00:00
Ray Speth
e9daef3313 Cleaned up Doxygen Documentation for matrix classes 
BandMatrix, DenseMatrix, SquareMatrix, and GeneralMatrix
 2013-05-29 00:11:22 +00:00
Ray Speth
7e8276809f Cleaned up Doxygen documentation for class BEulerInt 2013-05-29 00:11:17 +00:00
Ray Speth
0dba3d47a6 [Reactor] Converted ConstPressureReactor to (m,T,Yk) as independent variables 
Parallels the change of independent variables for Reactor introduced in r2295.
 2013-05-29 00:11:12 +00:00
Ray Speth
a59309e81e [Reactor] Independent variables for Reactor are now T,V, and Yk 
This formulation for the reactor's governing equations significantly improves
the performance of integrator, mostly by improving the quality of the
Jacobian. The effect is small for smaller mechanisms (GRI 3.0) but can lead to
order-of-magnitude improvements for mechanisms with hundreds or thousands of
species.

Since this set of variables corresponds to the intrinsic state variables used
for IdealGasPhase objects, we also eliminate the need to iterate when setting
the state of the thermo object.

Additionally, by using temperature as an independent variable, the
temperature-dependent parts of the kinetic rate expressions do not need to be
recomputed while updating the Jacobian (this optimization is not currently
implemented).
 2013-05-23 19:33:16 +00:00
Ray Speth
3850e0329d Fix preprocessor directives so that AssertFinite is always defined 
It is a no-op when "NDEBUG" is defined.
 2013-05-07 19:36:54 +00:00
Ray Speth
259ceaa9a6 Added assertions to check that some variables remain finite 2013-05-06 20:05:53 +00:00
Ray Speth
47598a197f Removed mdp_allo.h and mdp_allo.cpp from Cantera proper 2013-04-29 18:05:35 +00:00
Ray Speth
09def59948 Eliminated use of mdp functions in BEulerInt 2013-04-29 18:05:31 +00:00
Ray Speth
2c58b7237a Moved the "checkFinite" function into the Cantera namespace 2013-04-29 18:05:22 +00:00
Ray Speth
0a059d406a Eliminated unnecessary empty destructors from derived classes 
See http://www.parashift.com/c++-faq-lite/virtual-dtors.html
 2013-04-29 18:04:23 +00:00
Ray Speth
7fa9a9eb63 Added interface to LAPACK linear least squares solver, DGELSS 2013-04-24 21:47:53 +00:00
Ray Speth
ee74c80afc Fixed a number of "shadowed variable" compiler warnings 2013-04-18 22:08:36 +00:00
Ray Speth
ea8eca5bde Cleaned up Doxygen documentation for miscellaneous VCS classes 2013-04-18 22:08:27 +00:00
Ray Speth
fc7067b63d Cleaned up Doxygen documentation for class vcs_MultiPhaseEquil 2013-04-18 22:08:22 +00:00
Ray Speth
ba5115fe64 Cleaned up Doxygen documentation for class VCS_PROB 2013-04-18 22:08:16 +00:00
Ray Speth
fa9f58cb8a Cleaned up Doxygen documentation for class vcs_VolPhase 2013-04-18 22:08:11 +00:00
Ray Speth
30b01ab8fd Cleaned up Doxygen documentation for class VCS_SOLVE 2013-04-18 22:07:59 +00:00
Ray Speth
28414eb77d Cleaned up Doxygen docs for equilibrium functions 2013-04-18 22:07:54 +00:00
Ray Speth
723cc0a709 Cleaned up Doxygen docs for class MultiPhaseEquil 2013-04-18 22:07:49 +00:00
Ray Speth
651ce785cc Cleaned up Doxygen docs for class ChemEquil 2013-04-18 22:07:43 +00:00
Ray Speth
d1e438d8dd Cleaned up Doxygen docs for class MultiPhase and related functions 2013-04-18 22:07:37 +00:00
Ray Speth
e261fd8ef1 Removed the unnecessary tpx/subs.h file 2013-04-18 22:07:27 +00:00
Ray Speth
5be3edbd5f Cleaned up Doxygen documentation for pure fluid classes 2013-04-18 22:07:17 +00:00
Ray Speth
9a4b843d5e Cleaned up Doxygen docs for class clockWC 2013-04-18 22:07:11 +00:00
Ray Speth
97da05bc64 Cleaned up Doxygen docs for functions declared in plots.h 2013-04-12 23:07:53 +00:00
Ray Speth
1ee0835e9c Cleaned up Doxygen docs for PrintCtrl and LogPrintCtrl 2013-04-12 23:07:46 +00:00
Ray Speth
65d7cab42e Cleaned up Doxygen documentation for Application and global functions 2013-04-12 23:07:38 +00:00
Ray Speth
07fcf5aab2 Removed unnecessary overloads of writelog for char* 2013-04-12 23:07:30 +00:00
Ray Speth
910b75fc26 Combined overloaded definitions of fp2str and int2str 2013-04-12 23:07:23 +00:00
Ray Speth
5967e952e6 Cleaned up Doxygen docs for functions declared in stringUtils.h 2013-04-12 23:07:15 +00:00
Ray Speth
e13116c229 Cleaned up Doxygen documentation of XML-related classes 2013-04-12 23:07:02 +00:00