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187 commits

Author SHA1 Message Date
Ray Speth
6d5b7999de [SCons] Use specified 'python_compiler' to link Python module 
Fixes Issue 179.
 2013-10-15 17:06:35 +00:00
Ray Speth
f871dd8cf0 [SCons] Add 'python_compiler' option for Cython module compilation 2013-10-15 14:59:31 +00:00
Ray Speth
2de0ae6350 [SCons/Cython] Fix library_dirs to include BLAS/LAPACK directory 2013-09-30 01:54:12 +00:00
Ray Speth
a6f4c111e7 [Cython] Add declarations for free functions to _cantera.pxd 2013-09-30 01:53:40 +00:00
Ray Speth
0458eb736f [Cython] Add __init__.pxd to allow 'from cantera cimport ...' 2013-09-28 18:18:23 +00:00
Ray Speth
a6ce399374 [Cython] Move extra Cython-related headers to main include directory 2013-09-28 18:18:12 +00:00
Ray Speth
332569114e [Cython] Install headers needed for derived Cython modules 2013-09-25 23:05:21 +00:00
Ray Speth
7520170f30 [Cython] Improve support for building derived Cython modules 
The .pxd file now contains declarations for all of the cdef classes,
and is installed with the module.
 2013-09-25 22:57:36 +00:00
Ray Speth
717a2367b1 [Transport] Add electricalConductivity method to all language interfaces 
Thanks to user 'hencken' for the patch.

Resolves Issue 171.
 2013-08-23 17:43:55 +00:00
Ray Speth
1cedf904df [Doc] Add all Python examples to the Sphinx docs 2013-08-22 21:46:27 +00:00
Ray Speth
8d7f48d031 [Cython] Minor reorganization of examples 2013-08-22 21:46:17 +00:00
Ray Speth
3d5ac35c6f [Test] Avoid exact comparisons of floating point numbers 2013-08-21 19:49:37 +00:00
Ray Speth
32ea4fd924 [SCons] Fix to skip Python startup messages 
This fixes an issue when the Python interpreter prints startup messages that
appear before the expected output lines. Known to be a problem with the Anaconda
Python distribution.
 2013-08-16 17:25:04 +00:00
Ray Speth
d60629ead5 [Cython] Fix syntax errors in MixMaster for Python 3 
Backticks are not allowed in Python 3 (equivalent to repr)
 2013-08-14 17:56:05 +00:00
Ray Speth
a22ceda566 [Scons] Fix build order dependencies for python modules 2013-08-14 17:55:51 +00:00
Ray Speth
ea3ac2fc91 [Test] Fix file name used for Cython pdep tests 2013-08-02 23:17:49 +00:00
Ray Speth
3fe2cd9bbb [Cython] Fix format strings for compatibility with Python 2.6 2013-08-02 23:17:45 +00:00
Ray Speth
615c3124fb [Reactor] Fix sensitivity parameter order for constant pressure reactors 
This matches the behavior of Reactor, where the parameter order is
determined by the order of the reactions in the mechanism.
 2013-07-30 15:57:37 +00:00
Ray Speth
8724bc9f04 [Cython] Fix generation of MSI installer when using Python 2.x 
The old patch to distutils only worked on Python 3.x, since distutils
uses old-style classes which do not support property objects.
 2013-07-29 01:38:01 +00:00
Ray Speth
f320290c51 [SCons] Fix Python module path in setup_cantera and post-install message 
In particular, this fixes paths for Linux distros that put Python modules in
'lib64/pythonX.Y/site-packages'.

Also fixes the reported installation path for the Python module on Windows.
 2013-07-29 01:37:57 +00:00
Ray Speth
5bd01da0fa Fix deprecation warnings in SOFC example 2013-07-26 21:33:54 +00:00
Ray Speth
c76ddefa5f Fix spelling errors 2013-07-26 21:33:50 +00:00
Ray Speth
6fbf5d35ed [Cython] Make critial / saturation properties available for all phase types 
Any ThermoPhase class which overrides the appropriate methods will work,
and classes that don't will raise an exception.
 2013-07-23 15:31:09 +00:00
Ray Speth
4d406f2ff4 [Doc] Update compilation instructions related to Cython module 2013-07-23 15:30:53 +00:00
Ray Speth
fa1d9e1ca9 [Cython] Use scipy when necessary to support older Python versions 
Fixes an incompatibility with Python 2.6 and 3.1. Scipy is not
required when using Python 2.7 or 3.2+.
 2013-07-23 15:30:51 +00:00
Ray Speth
346f9e196f [Cython] Use unittest2 when necessary to support Python 2.6 2013-07-23 15:30:47 +00:00
Ray Speth
ab7775e67e [Cython] Fix Python 2.6 compatibility issues with sys.version_info 
The "major" attribute is a new feature in Python 2.7.
 2013-07-18 22:39:26 +00:00
Ray Speth
0fddd6a129 [Thermo] Fix errors in setState_SPorSV 
This corrects the behavior in cases where the correct temperature is below the
nominal minimum temperature for the phase.

Add test cases for this and analogous cases for the maximum temperature and
setState_HPorUV.

Fixes Issue 151.
 2013-07-18 19:07:14 +00:00
Ray Speth
a20fd58000 [1D] Fix save/restore when mechanism size differs 
The failures were caused when attempting to restore the tolerance vectors, which
have a value for each species. Since these tolerances are usually the same for
all species, the last value in the array can be used to extend the array to the
required length.

Also add some tests for this feature.
 2013-07-18 00:04:13 +00:00
Ray Speth
5d6a97f89a [Cython/Examples] Update to use IdealGasReactor 2013-07-16 22:09:55 +00:00
Ray Speth
a616d4f55f [Test] Fix dependencies so Cython tests run after rebuilding 2013-07-16 22:09:53 +00:00
Ray Speth
8a232abc71 [Reactor] Add optimized IdealGasConstPressureReactor class 
Like IdealGasReactor, this formulation uses the temperature as a state variable
to improve performance for the common use case of reactors containing ideal gas
mixtures.
 2013-07-16 22:09:46 +00:00
Ray Speth
785d4f058e [Reactor] Add optimized IdealGasReactor class 
This formulation of the reactor governing equations, with temperature as a state
variable, works better for ideal gas mixtures. This way, most of the Jacobian
components are derivatives at constant temperature, eliminating the need to
recompute the temperature-dependent part of the rate expressions when computing
these entries.
 2013-07-16 22:09:40 +00:00
Ray Speth
c89b7f1c93 [Reactor] Change formulation of Reactor to support non-ideal phases 
Expanding the time derivative of the total internal energy only works for ideal
phases, so for the more general case it is necessary to keep the internal energy
as the state variable and use an iterative method for setting the state.
 2013-07-16 22:09:37 +00:00
Ray Speth
77ccab92bd [Kinetics] Implement evaluation of "chemically activated" reaction rates 2013-07-06 21:44:02 +00:00
Ray Speth
1cec7cc051 [Cython] Fix a couple cases where exceptions could escape 2013-07-06 21:43:58 +00:00
Ray Speth
3e4c944416 [1D] Simplify interface for setting tolerances 2013-06-24 15:22:38 +00:00
Ray Speth
58d6917fe4 [Cython] Patch distutils to prevent overwriting of build-lib 
This bug in distutils prevented building the MSI installer on Windows.
 2013-06-24 15:21:25 +00:00
Ray Speth
4591159cd9 [SCons] Install script for running MixMaster with new Python module 2013-06-21 20:59:00 +00:00
Ray Speth
70178cee04 [MixMaster] Use the Cython-based Cantera API 2013-06-21 20:58:52 +00:00
Ray Speth
0a56f3286f [MixMaster] Make compatible with Python 3 
This also retains Python 2 support.
 2013-06-21 20:58:35 +00:00
Ray Speth
440bf4a8d1 Add current version of MixMaster to the Cython package 
Note that this currently doesn't work at all, due to both Python 3 compatibility
issues as well as the changes to the Cantera Python API
 2013-06-21 20:58:22 +00:00
Ray Speth
84aaec1417 [Cython] Install ck2cti.py and wrapper script 2013-06-21 20:58:15 +00:00
Ray Speth
39adabb820 [Cython] Fix a bug writing graphviz input files 2013-06-21 20:58:11 +00:00
Ray Speth
9740980c5d Deprecate class GRI_30_Kinetics 2013-06-13 22:50:14 +00:00
Ray Speth
9e9fe849bc Install ctml_writer with Cython module 2013-06-08 02:01:18 +00:00
Ray Speth
39770d6a48 [Cython] Fix Python 3 compatibility issue 2013-06-05 03:08:59 +00:00
Ray Speth
e667978655 [Cython] Allow setting state while holding specific properties constant 
The value "None" is used to indicate the property or properties being held
constant.
 2013-05-31 15:56:36 +00:00
Ray Speth
8ab5b27121 [Cython] Check property setters for the correct number of arguments 2013-05-31 15:56:25 +00:00
Ray Speth
0b00122062 [Cython] Add support for setting state using entropy + specifc volume 2013-05-31 15:55:57 +00:00