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398 commits

Author SHA1 Message Date
Ray Speth
3b78634381 Removed extraneous parentheses around arguments to 'delete'. 
'delete' is a keyword, not a function, so the parens are not necessary.
 2013-02-14 01:03:42 +00:00
Ray Speth
6d6e237f07 Removed unnecessary checks surrounding delete operations 2013-02-14 01:03:32 +00:00
Ray Speth
4e3a79394b Eliminated some shadowing of member variables by function arguments 2013-02-14 01:03:19 +00:00
Ray Speth
70b08a6891 Eliminated some local variable shadowing 2013-02-14 01:03:13 +00:00
Ray Speth
8a17523715 Use the "charge" member function consistently to access species charges 
Eliminated local alias to array of charges in some functions. Inlined the
"charge" function to mitigate any performance impact. Fixes a number of shadowed
variable warnings.
 2013-02-14 01:03:09 +00:00
Ray Speth
1a0b59efd4 Eliminated unnecessary variable shadowing in write_logfile 2013-02-14 01:03:05 +00:00
Ray Speth
d59cac4ca0 Cleaned up Doxygen docs for other descendants of ThermoPhase 2013-02-14 01:02:58 +00:00
Ray Speth
b15640a741 Cleaned up Doxygen documentation for class SurfPhase and descendants 2013-02-14 01:02:54 +00:00
Ray Speth
6b0a708389 Cleaned up Doxygen docs for class SingleSpeciesTP and descendants 2013-02-14 01:02:46 +00:00
Ray Speth
da33cc66c3 Cleaned up Doxygen docs for class VPStandardStateTP and descendants 2013-02-14 01:02:34 +00:00
Ray Speth
a25c1a43b3 [Kinetics] Fixed crashes when reaction mechanism contains no reactions 
Make sure several arrays are never of length zero so that taking &v[0]
is always well-defined.
 2013-02-14 01:02:18 +00:00
Ray Speth
ffd4a7418d Cleaned up Doxygen docs for the Phase and ThermoPhase classes 2013-02-14 01:02:14 +00:00
Harry Moffat
503a12b7aa Added constructors for direct initialization of the IdealGasPhase object. 
Moved destructor to .cpp file.
 2013-02-11 22:39:22 +00:00
Ray Speth
e48bd48c4e [1D] General cleanup of class Refiner 2013-02-07 23:41:49 +00:00
Ray Speth
dc1ffee1a2 Fixed some compiler warnings 
(shadowed virtual functions, initialization order)
 2013-02-07 23:41:42 +00:00
Ray Speth
7da738d238 Re-applied consistent formatting to trunk 
Applied using: astyle -n --style=kr --add-brackets --indent=spaces=4
--indent-col1-comments --unpad-paren --pad-header --align-pointer=type
--lineend=linux
 2013-02-07 23:40:59 +00:00
Ray Speth
a1d24776f1 Fixed setting m_nsp in TransportBase 2013-02-07 23:40:48 +00:00
Ray Speth
a5b1d1f7f6 [Reactor] Added ability to set the CVODES "MaxErrTestFails" variable 
Increasing this value (from the default of 7) will sometimes allow CVODES to
find solutions to problems that previously caused it to fail.
 2013-02-07 23:40:40 +00:00
Ray Speth
791c82b0c6 CVodesIntegrator now sets the minimum setp size when [re]initializing 2013-02-07 23:40:35 +00:00
Ray Speth
67a143f396 Refactored CVodesIntegrator to reduce redundancy when setting options 2013-02-07 23:40:31 +00:00
Ray Speth
15a45de820 Fixed some regressions in indentation consistency 
Problems with vcs_util.cpp were introduced in r1944. Problems with
NonLinearSolver.{h,cpp} were introduced in r1978.
 2013-02-01 23:40:07 +00:00
Ray Speth
9109888882 Fixed regressions in NonlinearSolver introduced in r1978 
Fixed signed/unsigned type consistency, spelling mistakes, and removed
unnecessary macros.
 2013-02-01 23:39:58 +00:00
Ray Speth
0dc32b6a61 Removed duplicate header files introduced in r1978 2013-02-01 23:39:48 +00:00
Ray Speth
78f6e61703 Combined the shared parts of AxiStagnFlow::eval and FreeFlame::eval 2013-01-17 15:31:36 +00:00
Victor Brunini
64aef5fac7 Rename m_y_n_1 and m_ydot_n_1 to _trial to clarify their intent. 
Add setPreviousTimeStep function to set m_y_nm1 and m_ydot_nm1
so that time derivative calculations can be run for time-dependent
nonlinear solves.

Change m_ydot_nm1 to a std::vector.
 2013-01-15 20:17:00 +00:00
Victor Brunini
a709d5f816 Revert "Removed unused member variable ReactionData.rxn_number" 
This variable is used in some applications we build against
cantera.

This reverts commit 7d7b6dd39d12c2e2bdd2a9d2a959c0aee3c0c4c5.
 2013-01-15 20:16:42 +00:00
Ray Speth
31f90fe32d Removed unnecessary typedef for 'index_t' 2013-01-11 22:56:44 +00:00
Ray Speth
d4525f0db7 Removed unused local variables from MargulesVPSSTP 2013-01-11 22:56:37 +00:00
Ray Speth
50327a665f Moved some function implementations out of InterfaceKinetics.h 
This gets rid of some (mostly spurious) warnings generated by MSVC
 2013-01-11 22:56:33 +00:00
Ray Speth
33653e7f43 Removed unused member variable ReactionData.rxn_number 2013-01-11 22:56:30 +00:00
Ray Speth
83097b3860 Consolidated definitions of repeatedly-used constants 
"MIN_X" and "TINY" are replaced by "Tiny". "xxSmall" is replaced with
"SmallNumber".
 2013-01-11 22:55:46 +00:00
Ray Speth
db4a1dfe46 Eliminated 'goto' statement in MixtureFugacityTP 2013-01-11 22:55:43 +00:00
Ray Speth
bd2bb215b4 Eliminated 'goto' statements in BasisOptimize.cpp 2013-01-11 22:55:40 +00:00
Ray Speth
17b9e86fb6 Eliminated "goto" statements in StFlow::restore 2013-01-11 22:55:35 +00:00
Victor Brunini
9b6b65fe04 Add function to DenseMatrix that multiplies two square matrices. 2013-01-07 18:18:10 +00:00
Ray Speth
205706f5dd [Reactor] Avoid a segfault when using phases with no Kinetics 2013-01-07 18:08:23 +00:00
Ray Speth
990a0b5491 Fixed an error that prevented HTML log files from being written 2013-01-07 18:08:17 +00:00
Ray Speth
382ad7ba80 Fixed compiler warnings about uninitialized values 2013-01-04 21:37:26 +00:00
Ray Speth
1e43e4f333 Added a version of writelog which takes the log level as an argument 2012-12-30 00:17:08 +00:00
Ray Speth
48383de86e [1D] Eliminated "goto" statements in MultiNewton::solve 2012-12-30 00:17:04 +00:00
Ray Speth
8da49ed999 [1D] Merged newton_utils.cpp with MultiNewton.cpp 2012-12-30 00:17:02 +00:00
Ray Speth
3baa0eae94 [1D] Fixed an indexing error that affected Jacobian evaluations 
Not all components of the Jacobian were being computed for the first point in
the first flow Domain.
 2012-12-30 00:16:56 +00:00
Ray Speth
6b8986d0d0 Fixed const-ness of PecosTransport virtual functions 
These now match the function signatures in the base class.
 2012-12-26 23:56:10 +00:00
Ray Speth
46a8b3052f Use size_t instead of int in InterfaceKinetics 2012-12-26 23:56:07 +00:00
Harry Moffat
eab8781ea7 Added back ability to get transport parameters from transport objects. 
Added back read and write of named XML array blocks.
Fixed an error in IonsFromNeutralVPSSTP.
 2012-12-21 01:18:28 +00:00
Ray Speth
6de7a739c9 [1D] Fixed save/restore for ReactingSurf1D 
This partially addresses Issue 90.
 2012-12-18 00:14:04 +00:00
Ray Speth
e4705bece1 [1D] save/restore includes boundary conditions for Surf1D and OutletRes1D 
This partially addresses Issue 90.
 2012-12-18 00:13:34 +00:00
Ray Speth
357ab0b668 [1D] save/restore now includes boundary conditions of Inlet1D objects 
This partially addresses Issue 90.
 2012-12-18 00:13:02 +00:00
Ray Speth
fdc13afb9f [1D] save/restore now includes the temperature fixed point 
This partially addresses Issue 90.
 2012-12-18 00:12:41 +00:00
Ray Speth
833ca13dc1 [1D/Python] Set pressure when restoring solution from XML file 
This partially addresses Issue 90.
 2012-12-18 00:11:24 +00:00