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1448 commits

Author SHA1 Message Date
Ray Speth
2c3512c22a [Thermo] Fix PDSS_HKFT initialization when one property is not given
Calculating one of G0, H0, or S0 requires the parent ThermoPhase object, so this
calculation has to be delayed until m_tp has been set.
2017-03-02 19:53:23 -05:00
Steven DeCaluwe
51f419fbad Enabling charge-transfer/electrochemical surface reactions
The previous formulation will only consider a rection as electrochemical
if a beta value is supplied for that reaction *and* the reaction is an
'edge_reaction.'  This is problematic for two reasons: (1) many/most
charge-transfer reactions of interest occur at two-phase boundaries (see,
for example, Li-ion batteries and PEM fuel cells), not the three-phase-
boundary-like edges (which are most relevant for SOFCs).  (2) determining
whether a reaction is electrochemical or not should not rely at all upon
user input - the program itself should check to see whether charge is
transferred between phases, and the appropriate steps should be taken
during rate-of-progress calcuations.

This commit addresses the former issue.  Currently, if a charge-transfer
reaction is written as a surface_reaction, the code does not apply the
voltage correction to the forward rate.  By default, then, the entire
voltage correction is applied to the reverse reaction, which is the same
as setting beta = 0; not a good 'default' behavior (beta = 0.5 is a more
appropriate default).  With this change, surface reactions can now be
supplied with a beta value in cti or xml formats, and will be recognized
as a charge transfer reaction.

Longer term, it would be better to change the constructor routines such
that charge transfer is automatically detected and handled, rather than
relying upon user-specified flags.
2017-02-25 19:13:38 -05:00
Ray Speth
afafa34c06 [Thermo] Remove unimplemented options for m_formGC from DebyeHuckel 2017-02-22 22:18:40 -05:00
Ray Speth
a6ac446021 [Thermo] Allow instantiation of IdealMolalSoln without XML 2017-02-22 22:18:40 -05:00
Ray Speth
f8ef4a8b2b [Thermo] Allow instantiation of RedlichKisterVPSSTP without XML 2017-02-22 22:18:40 -05:00
Ray Speth
31d54c3b11 [Thermo] Allow instantiation of MaskellSolidSolnPhase without XML 2017-02-22 22:18:40 -05:00
Ray Speth
b033d44d3e [Thermo] Make PDSS_ConstVol configurable without XML 2017-02-22 22:18:40 -05:00
Ray Speth
2b73fe24ba Deprecate class MixedSolventElectrolyte
No existing tests, no known example input files, and not constructible via
ThermoFactory.

See #267.
2017-02-22 22:18:40 -05:00
Ray Speth
6154e1b4bd Remove unused list of thermo models from ThermoFactory 2017-02-22 22:18:40 -05:00
Ray Speth
5efea12959 [Thermo] Allow instantiation of IdealSolnGasVPSS without XML
This is also the first test of PDSS_IdealGas that doesn't use XML
2017-02-22 22:18:40 -05:00
Ray Speth
3ea2a6caf3 [Thermo] Remove special case for aqueous phases in VPStandardStateTP
The flag 'm_useTmpRefStateStorage' used when one of the species was PDSS_Water
reduced functionality and provided no performance benefit.
2017-02-22 22:18:40 -05:00
Ray Speth
3c771ded2b [Thermo] Add PDSS objects to VPStandardStateTP without XML
Added PDSSFactory class to generalize PDSS object creation
2017-02-22 22:18:40 -05:00
Ray Speth
c28ca48cf8 Add option to specify synonyms for Factory model names 2017-02-22 22:18:40 -05:00
Ray Speth
04cac2b277 [Thermo] Refactor construction of PDSS objects
Introduce a default constructor for PDSS objects, and avoid
passing in unnecesary arguments to initialization functions.
2017-02-22 22:18:40 -05:00
Ray Speth
ff46dc93b5 [Thermo] Fix inconsistencies in PDSS_IonsFromNeutral
The definitions of p0, Tmin, and Tmax were circular -- they queried the
STITbyPDSS object which just referenced the same PDSS_IonsFromNeutral
object. Instead, pull these properties from the associated "neutral molecule"
phase.

The overrides of setTemperature and temperature were unnecessary and likely to
cause problems.
2017-02-22 22:18:40 -05:00
Ray Speth
574462fd3c [Thermo] Move common PDSS functions up to PDSS_Nondimensional 2017-02-22 22:18:40 -05:00
Ray Speth
3a119381e8 [Thermo] Fix creation of IonsFromNeutralVPSSTP objects
Added a mock input file derived from the initialization code in
IonsFromNeutralVPSSTP and PDSS_IonsFromNeutral.
2017-02-22 22:18:40 -05:00
Ray Speth
dfb32f0c7e [Thermo] Fix errors in entropy calculation in PDSS_IdealGas 2017-02-22 22:18:40 -05:00
Ray Speth
35679c2e9e [Thermo] Make m_species a non-pointer member of ThermoPhase 2017-02-22 22:18:40 -05:00
Steven DeCaluwe
dd521de254 Cleaning up pressure implementation in MixtureFugacityTP and derived classes.
Cleaning up `RedlichKwongMFTP:pressure()` and removing `m_Pcurrent` as a cached
value in `RedlichKwongMFTP` and `MixtureFugacityTP`.  The stored value was only
ever called in one location `RedlichKwongMFTP:getPartialMolarVolumes()`, and
the function call it replaced (`RedlichKwongMFTP:pressure()`) is not all that
involved.
2017-02-22 17:58:54 -05:00
Steven DeCaluwe
ecbd819e91 Commenting out sanity check in `RedlichKwongMFTP::pressure' and removing m_Pcurrent 2017-02-22 17:58:54 -05:00
Ray Speth
db1f1af0a0 [Thermo] Fix RedlichKwongMFTP in temperature-independent case
If the "a" coefficients for all species were temperature independent, the array
containing "a" at the current temperature was never being populated. Fixes a
regression introduced in 19c17d1.
2017-02-17 16:38:47 -05:00
Ray Speth
0a1257daed Stream input to ctml_writer to avoid command line length limits
Resolves #416.
2017-02-13 19:37:24 -05:00
Ray Speth
b39537bfcb [Thermo] Merge functionality of VPSSMgr into VPStandardStateTP
Remove the now-unused VPSSMgr class and descendants.
2017-02-13 13:25:46 -05:00
Ray Speth
50ed3f2e72 [Thermo] PDSS objects store their own data 2017-02-13 13:25:46 -05:00
Ray Speth
7b529ac2d6 [Thermo] Fix error in PDSS_Water reference state calculations
The water property calculator needs to be given the correct phase guess,
otherwise it will return in an invalid state.
2017-02-13 13:25:46 -05:00
Ray Speth
38d291c683 [Thermo] Fix reference pressure assumptions in VPSSMgr classes
The reference pressure (p0) must be species-specific, since for certain PDSS
classes (e.g. PDSS_Water) p0 is a function of temperature, while for other
classes (PDSS_ConstVol) it is a constant.

VPSSMgr_Water_ConstVol further assumed that the reference pressure for all
species was 1 atm, ignoring the setting in the PDSS object. Fixing this changed
test results for HMW_test_1 and HMW_test_3.

Added a test that specifically compares VPSSMgr_Water_ConstVol with
VPSSMgr_General.
2017-02-13 13:25:46 -05:00
Ray Speth
5a0fb579a8 [Kinetics] Prevent double counting in reaction path diagrams
This fixes the double counting that occurs in reactions like:

    H + HO2 => 2 OH

Fixes #377
2017-02-12 22:32:39 -05:00
Ray Speth
3093e6e6d4 [Kinetics] Restore old handling of repeated species in path diagrams
Fixes an error introduced in 37f71bd9 which caused these reactions to be
ignored. However, flux calculations for reactions such as H + HO2 -> 2 OH are
still incorrect.
2017-02-12 22:32:39 -05:00
Ray Speth
0d982c8f58 Fix use of 'scale' and 'OneWayFlow' options in ReactionPathDiagram
Fixes #378
2017-02-12 22:32:39 -05:00
Ray Speth
7673f7cb52 Remove code deprecated in Cantera 2.3.0 2017-02-12 19:22:33 -05:00
Ray Speth
19c17d149b [Thermo] Allow instantiation of RedlichKwongMFTP without XML
This also adds the first test which instantiates a RedlichKwongMFTP object, and
removes some unused member variables and private methods from the class.
2017-02-05 15:51:24 -05:00
Ray Speth
507a3a9985 [Thermo] Allow instantiation of WaterSSTP without XML 2017-02-03 23:46:03 -05:00
Ray Speth
86dca05369 [Thermo] Make PureFluidPhase configurable without XML
The 'setSubstance' method allows setting the equation of state to use, which
could only be done before using the 'setParametersFromXML' method.
2017-02-03 21:56:29 -05:00
Ray Speth
62c67e4ad1 [TPX] Add factory function for Substance from species name
This function had been defined but not declared.
2017-02-03 21:53:50 -05:00
Ray Speth
3f6f580b25 Fix issues parsing some composition strings
The parser was having issues in cases where there was both a space following the
colon and a comma following the value.
2017-01-28 00:04:36 -05:00
Ray Speth
5fcbfde40e Make error message from newSpeciesThermoInterpType more informative 2017-01-27 18:17:22 -05:00
Ray Speth
0fd2f7c4d0 [Kinetics] Check for unmatched duplicate reactions
Reactions which are marked as duplicates but have no matching reactions are
considered errors.

Fixes #389
2017-01-23 14:34:18 -05:00
Ray Speth
8e89bbb8d2 Add methods for accessing the git commit used when compiling 2017-01-20 22:43:56 -05:00
Ray Speth
17c1f9dc14 [SCons] Make definition of CANTERA_DATA local to application.cpp 2017-01-20 17:58:40 -05:00
Ray Speth
ac5337130a [Kinetics] Validate balance of surface sites for interface reactions
The number of surface sites should be the same for the reactants and products.

Fixes #412
2017-01-20 17:40:34 -05:00
Steven DeCaluwe
d655cf0eae Correcting RedlichKwongMFTP::getActivityConcentrations
Implementing correct 'activity concentrations' routine, based on
fugacity coefficients, and cleaning up extraneous comments, whitespace, etc.
2017-01-02 09:03:07 -05:00
Ray Speth
4669b9cf5a Fix miscellaneous spelling errors 2016-12-30 13:26:50 -05:00
Ray Speth
d9ff992817 Fix temporary cti filename for MinGW 2016-12-29 22:06:27 -05:00
Santosh Shanbhogue
3593fad14a Fix ct2ctml when string passed as 'source' argument
Make ct2ctml create a temp cti file for a large source argument

Fixes #416
2016-12-29 22:06:27 -05:00
Ray Speth
2284bc9186 [Transport] Fix transport geometry flag check for charged species
Electrons should not be counted when determining the number of atoms in a
molecule and the corresponding allowable molecular geometries.
2016-12-17 19:09:37 -05:00
arghdos
84e6775ee3 remove special treatment of falloff #'s, resolves #404 2016-12-06 21:30:20 -05:00
Ray Speth
0787e4194e [Base] Fix parsing composition strings when last name contains a colon
If the last species name in a composition string contained a colon, it would not
be parsed correctly.
2016-11-27 17:41:37 -05:00
Ray Speth
aa4d07f543 [Thermo] Allow discontinuous thermo warnings to be suppressed
Resolves #354
2016-11-26 00:57:23 -05:00
Ray Speth
469cc63d99 Remove unused code from ReactionPathBuilder 2016-11-25 23:42:01 -05:00