When using Python 3, using -1 as the dummy value for density and site_density
causes probems, because the (ordered) comparison between a density specified
with units (as a tuple) and 0 is not allowed. Instead, use None as the
placeholder value.
Cherry-pick of trunk commit r2800.
Use separate SCons Environments so the 'py_include_dirs' variable (which
contains the Numpy include directory) can be distinct for each Python module.
Cherry-pick of trunk r2710.
This addesses a parsing error that would occur if a mechanism contained both
'foo' and 'foo+', where reactions written as 'foo+bar' would be parsed as a
reaction with 'foo+' and 'bar'.
See Issue 182.
Cherry pick of trunk commit r2701.
Fixes the case where the next section header contains a modifier, e.g. 'thermo
all' or 'reactions <units>'.
Based on a patch provided by Bryan Weber.
See Issue 199.
Cherry-pick of trunk r2662.
Warn when a species is given multiple times in the input list. Do not add the
duplicate species to speciesList.
Based on patch provided by Bryan Weber.
Resolves Issue 199.
Cherry-pick of trunk r2660.
Adding the attribute allow_discontinuities="true" to a phase's
'thermo' node (CTML) or adding 'allow_discontinuous_thermo' to a
phase's 'options' argument (CTI) will disable the automatic adjustment
of the provided polynomials so that enthalpy and entropy are
continuous at the midpoint temperature.
Cherry-pick of trunk r2590.
This fixes the problem of some output (notably from the 1D solver)
going to std::cout when that is not the primary output location,
e.g. when using IDLE or the IPython QtConsole.
There are three problems with this function. It does not work, since
it calls ctmethods with the wrong number of arguments. Even if that
were fixed, it wouldn't do what it claims, as the method it calls
generates a CTI file, not an XML file. Finally, it is redundant, as
the 'ck2cti' function can be used for generating the CTI file, and the
CTI to XML conversion is handled automatically when importing the
phase.
Therefore, this function is being removed.
This fixes an issue when the Python interpreter prints startup messages that
appear before the expected output lines. Known to be a problem with the Anaconda
Python distribution.
In particular, this fixes paths for Linux distros that put Python modules in
'lib64/pythonX.Y/site-packages'.
Also fixes the reported installation path for the Python module on Windows.
