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1942 commits

Author SHA1 Message Date
Christopher Lueth
0d31b2f7a7 Added a few unit definitions to units.h 
Overloaded getFloat to allow call to getFloatArray and return a vector
 2010-02-27 00:49:36 +00:00
Christopher Lueth
d9b4031614 Added excess volume capability for GibbsExcessVPSSTP and children 
Corrected activity coefficients calculation for >2 species
 2010-02-27 00:47:47 +00:00
Harry Moffat
59c867ebae Fixed some malloc errors that left some memory unfreed. 2010-01-31 00:26:54 +00:00
Harry Moffat
47ef65b849 Fixed a memory leak error, due to faulty logic in 
the destructor.
 2010-01-30 22:46:07 +00:00
Harry Moffat
e3789e48e3 Fixed an obvious error with the stefan maxwell formulation for 
liquid transport.
 2010-01-28 03:28:45 +00:00
Harry Moffat
be731888a4 Fixed a UMR error, due to a missing initialization list. 2010-01-19 18:27:34 +00:00
Harry Moffat
7abb1dc33a Merged with the trunk. 2010-01-17 19:08:00 +00:00
Harry Moffat
66ea343cea Doxygen update 
- no code changed
  - All the easy warning messages are eliminated now from the trunk.
 2010-01-17 18:17:55 +00:00
Harry Moffat
36e4040750 Doxygen update 
- beat down the warning messages from this directory.
   - no code changed other than reformatting.
 2010-01-17 17:55:28 +00:00
Harry Moffat
180fbef55d Doxygen update 
- no code has been changed other than a change of symbols.
 2010-01-17 17:05:46 +00:00
Harry Moffat
8af585eeab Doxygen update - no code changed. 
Working on beating down the warnings
 2010-01-16 18:57:05 +00:00
Harry Moffat
8c9a3bdf4b Fixed errors in the formulation of the base class. This 
left unsatisfied externals in applications.
 2010-01-16 18:09:44 +00:00
Harry Moffat
0bcb614d21 Merged from the trunk to this branch. 
I don't think the trunk had any real changes in it.
 2010-01-15 21:20:41 +00:00
Harry Moffat
3587de40b7 Doxygen update on SingleSpeciesTP 
double to doublereal conversions

made sure const parameters match on setTemperature()
 2010-01-15 20:22:09 +00:00
Harry Moffat
8ea0c8197e Made sure all double values were doublereal 2010-01-13 22:12:27 +00:00
Harry Moffat
bedb314545 Eliminated a doxygen error. 2010-01-12 21:34:40 +00:00
Harry Moffat
ab38d29228 Fixed a doxygen compatibility problem. 2010-01-12 21:27:32 +00:00
Harry Moffat
3d392242d9 Added documentation for an external int 2010-01-12 21:23:08 +00:00
Harry Moffat
41e207d762 Added comments. 2010-01-12 17:16:57 +00:00
John Hewson
4b676b388c Changed the signature of LiquidTranInteraction::getMatrixTransProp( 
DenseMatrix &mat, doublereal* speciesValues = 0 ) so that now it takes
a reference to the matrix that needs to be filled, avoiding an extra
copy construction.

For vector and DenseMatrix resize operations, added 0.0 or 0 as
initialization value so that we don't have garbage in these.  This is
most relevant for vectors of pointers where we need NULL values to
test against.
 2010-01-12 00:42:50 +00:00
Harry Moffat
b41d72bf4c Merged changes from the trunk. 
Note, there isn't any changes in the core code done here.
 2010-01-04 01:42:45 +00:00
Harry Moffat
e381001c95 Merged changes from the 1.8.0 branch ontl the main trunk. 2010-01-04 00:46:26 +00:00
Harry Moffat
a0cdf79771 Reduced the accuracy on the comparisons 2010-01-03 23:56:43 +00:00
Harry Moffat
fd287e1d89 reduced the precision on the comparisons 2010-01-03 23:54:24 +00:00
Harry Moffat
23c50efe35 rebaselined the solution 2010-01-03 23:44:55 +00:00
Harry Moffat
2cb7eb7580 Added two new files that will be used in the windows debug compile. 2009-12-30 23:08:17 +00:00
Harry Moffat
4297e1ce11 Doxygen commit. 
Added stuff to the tranprops group.
 2009-12-30 18:40:44 +00:00
Harry Moffat
fabfb44b4e Switched a call in MultiPhase to be public. 
switched velocityBasis to a typedef. It seemed the better solution. Note the concept is still basically undeveloped.
Doxygen changes - supporting 1.6.2
 2009-12-30 17:58:38 +00:00
Harry Moffat
c03e7c2ab5 Merged the changes made in the 1.8.0 branch into the main trunk. 2009-12-29 02:47:28 +00:00
Harry Moffat
3b8018e5fb Merged the changes in the 1.8.0_Revision into this branch. 2009-12-29 02:45:58 +00:00
Harry Moffat
0ddc9d4186 Finished adding to the ignore lists... 2009-12-29 02:34:56 +00:00
Harry Moffat
01852ed442 Worked on the ignore file list 2009-12-29 02:09:01 +00:00
Harry Moffat
9cf35bff4f Removed errors in the makefiles. 2009-12-29 01:41:41 +00:00
Harry Moffat
7113dd53da Reblessed this solution -> may be changing arbitrarily and problematically 2009-12-29 01:41:01 +00:00
Harry Moffat
3a7cca584c Rebaselined a few tests. 
Worked on changing the solution for 2 problematic tests: 
            catcomb_stagflow
            surf_rxn

  The catcomb problem actually needed the surface mechanism to be 
changed for it to become a reliable solve.
 2009-12-29 01:28:09 +00:00
Harry Moffat
5b725eec64 Fixed the problem so that convergence would occur. 
The time step in the inner loop was decreased by a factor of 100.
   Previously, there were convergence problems with this example problem.
 2009-12-28 23:04:55 +00:00
Harry Moffat
a2a507d779 Reverted commit #316# , which added a pointer to a transport object. 
We are trying to keep the major sections of cantera separate from each
other to impose a coarse grained modularity on the code. And, adding a
pointer here leads to their linkages at a lower level. Linkages at a
higher level are encouraged, however This is the same reason why there isn't
a kinetics pointer here as well.
 2009-12-24 17:11:51 +00:00
Harry Moffat
b0a7626dcc Doxygen update. No code changed. 2009-12-23 01:52:40 +00:00
Harry Moffat
2ee8ae220d Fixed an error with the assignment and copy constructor. 
The VPSSMgr object needed to be resynched with the VPStandardStateTP
object after it was set up. This was not done.
 2009-12-22 22:35:30 +00:00
Harry Moffat
d96464f0c2 Fixed an error in the assignment and copy constructor. 
The VPSSMgr object needed to be resynced at the end of the
assignment. This wasn't being done.
 2009-12-22 22:27:01 +00:00
Harry Moffat
a7a59b84b8 Fixed an error in the assignment operator. 
The internal state of the VPSSMgr object must be resynced
by calling stateState_TP() after the new VMSSMgr object is set up.
 2009-12-22 22:23:53 +00:00
Harry Moffat
acf0c3f7c3 Fixed a typo that was causing sundials version 2.3 builds to fail. 
The define variable was spelled incorrectly.
 2009-12-21 21:02:28 +00:00
Harry Moffat
4420038d29 Fixed an error that caused sundials version 2.3 not to work as intended. 
There was an error in the ifdef variable's spelling.
 2009-12-21 20:27:18 +00:00
Harry Moffat
ec3c7e37c7 Fixed an error that caused sundials version 2.3 not to work as intended. 2009-12-21 20:21:40 +00:00
Harry Moffat
c865e0e4d7 Changes to allow the program to compile! 
visc_Eij and visc_Sij seem to have been taken out. And, the code no longer needs to resize them.
    Also took out some warning messages
 2009-12-21 18:15:15 +00:00
John Hewson
cb5e85ed5c Removed parsing for old Liquid Transport Interaction models 2009-12-18 21:30:24 +00:00
John Hewson
b4032c9d9a Updating Doxygen comments 2009-12-18 21:28:25 +00:00
Harry Moffat
39ea7fdeab Doxygen update. 
Worked on general information for the Transport classes.
 2009-12-18 16:43:20 +00:00
Harry Moffat
1ab5f6725a Utility commit 
- doxygen updates
   - started filling in copy constructors, assignment operator, and dupl function.
 2009-12-17 22:13:14 +00:00
John Hewson
d38eea717a Updating Doxygen comments 2009-12-17 19:07:53 +00:00