diff --git a/Cantera/matlab/SConscript b/Cantera/matlab/SConscript
index b4183c4a0..3b4c9138f 100644
--- a/Cantera/matlab/SConscript
+++ b/Cantera/matlab/SConscript
@@ -8,13 +8,14 @@ class MatlabBuilder(object):
 
     def __call__(self, target, source, env):
         filenames = [os.path.split(node.path)[1] for node in source]
-        sourcestr = ' '.join(pjoin('private',name) for name in filenames)
+        sourcestr = ' '.join(pjoin('..','src',name) for name in filenames)
         includes = ' '.join('-I%s' % Dir(s).abspath for s in env['CPPPATH'])
         libdir = ' '.join('-L%s' % Dir(s).abspath for s in env['LIBPATH'])
         libs = ' '.join('-l'+s for s in self.libs)
         text = """
 disp('building Cantera...');
-mex -cxx -v %(sourcestr)s %(include)s %(libdir)s %(libs)s
+cd cantera
+mex -cxx -v -output ctmethods %(sourcestr)s %(include)s %(libdir)s %(libs)s
 disp('done.');
 exit
 """ % dict(sourcestr=sourcestr,
@@ -27,15 +28,24 @@ exit
 
 localenv = env.Clone()
 
-localenv.Command('cantera/build_cantera.m',
-                 mglob(localenv, 'cantera/private', 'cpp'),
+localenv.Command('build_cantera.m',
+                 mglob(localenv, 'src', 'cpp'),
                  MatlabBuilder(localenv['cantera_libs']))
 
 localenv['ENV']['PATH'] = os.environ['PATH']
 
 build_cmd = 'cd ${SOURCE.dir}; %(matlab_cmd)s -nojvm -nosplash -r build_cantera'
-target = localenv.Command('cantera/ctfunctions.mexa64',
-                          'cantera/build_cantera.m',
+target = localenv.Command('cantera/ctmethods.mexa64',
+                          'build_cantera.m',
                           build_cmd % localenv)
-
 buildTargets.extend(target)
+
+### Install the Matlab toolbox ###
+inst = localenv.RecursiveInstall(pjoin('$prefix', 'matlab','toolbox'), 'cantera')
+installTargets.extend(inst)
+
+inst = localenv.RecursiveInstall(pjoin('$ct_tutdir', 'matlab'), 'tutorial')
+installTargets.extend(inst)
+
+inst = localenv.RecursiveInstall(pjoin('$ct_demodir', 'matlab'), 'examples')
+installTargets.extend(inst)
diff --git a/Cantera/matlab/cantera/build.m b/Cantera/matlab/cantera/build.m
deleted file mode 100755
index ad8dc04c9..000000000
--- a/Cantera/matlab/cantera/build.m
+++ /dev/null
@@ -1,45 +0,0 @@
-disp('building Phase...');
-%buildphase
-cd @Phase/private
-mex newphase.cpp -lct
-mex phase_get.cpp -lct
-mex phase_set.cpp -lct
-cd ../..
-    
-disp('building Thermo...');
-%buildthermo
-cd @Thermo/private
-mex newthermo.cpp -lct
-mex thermo_get.cpp -lct
-mex thermo_set.cpp -lct
-cd ../..
-    
-disp('building Kinetics...');
-%buildkinetics
-cd @Kinetics/private
-mex newkinetics.cpp -lct
-mex kin_get.cpp -lct
-mex kin_set.cpp -lct
-mex rstoich.cpp -lct
-mex pstoich.cpp -lct
-mex rop.cpp -lct
-mex production.cpp -lct
-mex isrev.cpp -lct
-mex rxnstring.cpp -lct
-cd ../..
-
-disp('building Transport...');
-%buildtransport
-cd @Transport/private
-mex newTransport.cpp -lct
-mex trans_methods.cpp -lct
-cd ../..
-
-%
-disp('building Functions...');
-cd private
-mex addCanteraDirectory.cpp -lct
-mex clearStorage.cpp -lct
-mex import_from_file.cpp -lct
-mex getCanteraError.cpp -lct
-cd ..
diff --git a/Cantera/matlab/cantera/build_cantera_static.m b/Cantera/matlab/cantera/build_cantera_static.m
deleted file mode 100755
index f74fca90a..000000000
--- a/Cantera/matlab/cantera/build_cantera_static.m
+++ /dev/null
@@ -1,33 +0,0 @@
-
-disp('building Cantera as a statically linked mex application ...');
-mex -v  -Ic:/vc_env/cant17/build/include private/ctmethods.cpp private/ctfunctions.cpp ...
-    private/xmlmethods.cpp private/phasemethods.cpp  ...
-    private/thermomethods.cpp private/kineticsmethods.cpp ...
-    private/transportmethods.cpp private/reactormethods.cpp ...
-    private/reactornetmethods.cpp ...
-    private/wallmethods.cpp private/flowdevicemethods.cpp ...
-    private/funcmethods.cpp ...
-    private/mixturemethods.cpp ...
-    private/onedimmethods.cpp private/surfmethods.cpp  ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/clibstatic.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/oneD.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/zeroD.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/transport.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/equil.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/kinetics.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/thermo.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/numerics.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/converters.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/base.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/ctcxx.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/tpx.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/NVEC_SER.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/CVODES.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/SUNDIALS_SHARED.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/ctmath.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/ctlapack.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/ctblas.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/ctf2c.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/ctlapack.lib ...
-    c:/vc_env/cant17/build/lib/i686-pc-win32/ctblas.lib ...
-   
diff --git a/Cantera/matlab/cantera/private/importFromFile.m b/Cantera/matlab/cantera/private/importFromFile.m
deleted file mode 100755
index 3312fa09e..000000000
--- a/Cantera/matlab/cantera/private/importFromFile.m
+++ /dev/null
@@ -1,33 +0,0 @@
-function b = importFromFile(th, k, infile, therm_db)
-%importFromFile  import a definition of a phase from a file.
-%
-%   function importFromFile reads element, species, and reaction
-%   definitions from a file. The elements and species are added to
-%   thermo object 'th', and the reactions are added to 'k', which must be a
-%   kinetics manager for object th.
-
-if nargin > 3
-   therm = therm_db;
-elseif nargin == 3
-   therm = ' ';
-elseif nargin < 3
-   error('syntax error: not enough arguments');
-end
-
-lasterr('');
-
-if isa(th,'Thermo') & isa(k,'Kinetics') & isa(infile,'char') & isa(therm,'char')
-   ok = import_from_file(hndl(th), hndl(k), infile, therm, ' ', 1);
-   if ok == -1
-      error(geterr);
-   elseif ok == -999
-      disp('exception');
-      error(lasterr);
-   elseif ok < 0
-      error('Error importing file');
-   end
-   
-else
-   error('syntax error');
-end
-b = {th, k};
diff --git a/Cantera/matlab/cantera/examples/catcomb.m b/Cantera/matlab/examples/catcomb.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/catcomb.m
rename to Cantera/matlab/examples/catcomb.m
diff --git a/Cantera/matlab/cantera/examples/diffflame.m b/Cantera/matlab/examples/diffflame.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/diffflame.m
rename to Cantera/matlab/examples/diffflame.m
diff --git a/Cantera/matlab/cantera/examples/equil.m b/Cantera/matlab/examples/equil.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/equil.m
rename to Cantera/matlab/examples/equil.m
diff --git a/Cantera/matlab/cantera/examples/flame.m b/Cantera/matlab/examples/flame.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/flame.m
rename to Cantera/matlab/examples/flame.m
diff --git a/Cantera/matlab/cantera/examples/flame1.m b/Cantera/matlab/examples/flame1.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/flame1.m
rename to Cantera/matlab/examples/flame1.m
diff --git a/Cantera/matlab/cantera/examples/flame2.m b/Cantera/matlab/examples/flame2.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/flame2.m
rename to Cantera/matlab/examples/flame2.m
diff --git a/Cantera/matlab/cantera/examples/ignite.m b/Cantera/matlab/examples/ignite.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/ignite.m
rename to Cantera/matlab/examples/ignite.m
diff --git a/Cantera/matlab/cantera/examples/ignite2.m b/Cantera/matlab/examples/ignite2.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/ignite2.m
rename to Cantera/matlab/examples/ignite2.m
diff --git a/Cantera/matlab/cantera/examples/ignite3.m b/Cantera/matlab/examples/ignite3.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/ignite3.m
rename to Cantera/matlab/examples/ignite3.m
diff --git a/Cantera/matlab/cantera/examples/ignite_hp.m b/Cantera/matlab/examples/ignite_hp.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/ignite_hp.m
rename to Cantera/matlab/examples/ignite_hp.m
diff --git a/Cantera/matlab/cantera/examples/ignite_uv.m b/Cantera/matlab/examples/ignite_uv.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/ignite_uv.m
rename to Cantera/matlab/examples/ignite_uv.m
diff --git a/Cantera/matlab/cantera/examples/isentropic.m b/Cantera/matlab/examples/isentropic.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/isentropic.m
rename to Cantera/matlab/examples/isentropic.m
diff --git a/Cantera/matlab/cantera/examples/periodic_cstr.m b/Cantera/matlab/examples/periodic_cstr.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/periodic_cstr.m
rename to Cantera/matlab/examples/periodic_cstr.m
diff --git a/Cantera/matlab/cantera/examples/prandtl1.m b/Cantera/matlab/examples/prandtl1.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/prandtl1.m
rename to Cantera/matlab/examples/prandtl1.m
diff --git a/Cantera/matlab/cantera/examples/prandtl2.m b/Cantera/matlab/examples/prandtl2.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/prandtl2.m
rename to Cantera/matlab/examples/prandtl2.m
diff --git a/Cantera/matlab/cantera/examples/rankine.m b/Cantera/matlab/examples/rankine.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/rankine.m
rename to Cantera/matlab/examples/rankine.m
diff --git a/Cantera/matlab/cantera/examples/reactor1.m b/Cantera/matlab/examples/reactor1.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/reactor1.m
rename to Cantera/matlab/examples/reactor1.m
diff --git a/Cantera/matlab/cantera/examples/reactor2.m b/Cantera/matlab/examples/reactor2.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/reactor2.m
rename to Cantera/matlab/examples/reactor2.m
diff --git a/Cantera/matlab/cantera/examples/run_examples.m b/Cantera/matlab/examples/run_examples.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/run_examples.m
rename to Cantera/matlab/examples/run_examples.m
diff --git a/Cantera/matlab/cantera/examples/surfreactor.m b/Cantera/matlab/examples/surfreactor.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/surfreactor.m
rename to Cantera/matlab/examples/surfreactor.m
diff --git a/Cantera/matlab/cantera/examples/test_examples.m b/Cantera/matlab/examples/test_examples.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/test_examples.m
rename to Cantera/matlab/examples/test_examples.m
diff --git a/Cantera/matlab/cantera/examples/transport1.m b/Cantera/matlab/examples/transport1.m
similarity index 100%
rename from Cantera/matlab/cantera/examples/transport1.m
rename to Cantera/matlab/examples/transport1.m
diff --git a/Cantera/matlab/cantera/private/ctfunctions.cpp b/Cantera/matlab/src/ctfunctions.cpp
similarity index 94%
rename from Cantera/matlab/cantera/private/ctfunctions.cpp
rename to Cantera/matlab/src/ctfunctions.cpp
index 49c4edcad..d06fb6146 100644
--- a/Cantera/matlab/cantera/private/ctfunctions.cpp
+++ b/Cantera/matlab/src/ctfunctions.cpp
@@ -6,9 +6,9 @@
  */
 
 #include "mex.h"
-#include "../../../clib/src/ct.h"
-#include "../../../clib/src/ctonedim.h"
-#include "../../../clib/src/ctxml.h"
+#include <cantera/clib/ct.h>
+#include <cantera/clib/ctonedim.h>
+#include <cantera/clib/ctxml.h>
 #include "ctmatutils.h"
 #include <string.h>
 #include <iostream>
diff --git a/Cantera/matlab/cantera/private/ctmatutils.h b/Cantera/matlab/src/ctmatutils.h
similarity index 100%
rename from Cantera/matlab/cantera/private/ctmatutils.h
rename to Cantera/matlab/src/ctmatutils.h
diff --git a/Cantera/matlab/cantera/private/ctmethods.cpp b/Cantera/matlab/src/ctmethods.cpp
similarity index 96%
rename from Cantera/matlab/cantera/private/ctmethods.cpp
rename to Cantera/matlab/src/ctmethods.cpp
index 37082547c..8cc2ae7d0 100644
--- a/Cantera/matlab/cantera/private/ctmethods.cpp
+++ b/Cantera/matlab/src/ctmethods.cpp
@@ -9,11 +9,8 @@
  * class is indicated by the first parameter in the call from MATLAB.
  */
 
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ct.h>
 #include <string>
-//#include "../../../src/base/ct_defs.h"
-//#include "../../../src/base/global.h"
-//#include "../../../src/base/logger.h"
 #include "mex.h"
 #include "ctmatutils.h"
 #include "mllogger.h"
diff --git a/Cantera/matlab/cantera/private/flowdevicemethods.cpp b/Cantera/matlab/src/flowdevicemethods.cpp
similarity index 96%
rename from Cantera/matlab/cantera/private/flowdevicemethods.cpp
rename to Cantera/matlab/src/flowdevicemethods.cpp
index d46e3abfc..30109ca40 100644
--- a/Cantera/matlab/cantera/private/flowdevicemethods.cpp
+++ b/Cantera/matlab/src/flowdevicemethods.cpp
@@ -1,8 +1,8 @@
 
 #include "mex.h"
 #include "ctmatutils.h"
-#include "../../../clib/src/ctreactor.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ctreactor.h>
+#include <cantera/clib/ct.h>
 
 
 //const double Undef = -999.123;
diff --git a/Cantera/matlab/cantera/private/funcmethods.cpp b/Cantera/matlab/src/funcmethods.cpp
similarity index 95%
rename from Cantera/matlab/cantera/private/funcmethods.cpp
rename to Cantera/matlab/src/funcmethods.cpp
index 95ccbf06a..8f83b904b 100644
--- a/Cantera/matlab/cantera/private/funcmethods.cpp
+++ b/Cantera/matlab/src/funcmethods.cpp
@@ -1,8 +1,8 @@
 
 #include "mex.h"
 #include "ctmatutils.h"
-#include "../../../clib/src/ctfunc.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ctfunc.h>
+#include <cantera/clib/ct.h>
 
 void funcmethods( int nlhs, mxArray *plhs[],
     int nrhs, const mxArray *prhs[] )
diff --git a/Cantera/matlab/cantera/private/kineticsmethods.cpp b/Cantera/matlab/src/kineticsmethods.cpp
similarity index 99%
rename from Cantera/matlab/cantera/private/kineticsmethods.cpp
rename to Cantera/matlab/src/kineticsmethods.cpp
index 21d8ab024..6638fb40b 100644
--- a/Cantera/matlab/cantera/private/kineticsmethods.cpp
+++ b/Cantera/matlab/src/kineticsmethods.cpp
@@ -1,7 +1,7 @@
 
 #include "mex.h"
 #include "ctmatutils.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ct.h>
 
 void checkNArgs(const int n, const int nrhs) {
     if (n != nrhs) {
diff --git a/Cantera/matlab/cantera/private/mixturemethods.cpp b/Cantera/matlab/src/mixturemethods.cpp
similarity index 98%
rename from Cantera/matlab/cantera/private/mixturemethods.cpp
rename to Cantera/matlab/src/mixturemethods.cpp
index 671c8d901..9298bbbff 100644
--- a/Cantera/matlab/cantera/private/mixturemethods.cpp
+++ b/Cantera/matlab/src/mixturemethods.cpp
@@ -5,8 +5,8 @@
  *    $Id: mixturemethods.cpp,v 1.3 2009/07/11 16:43:12 hkmoffa Exp $
  */
 #include "mex.h"
-#include "../../../clib/src/ctmultiphase.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ctmultiphase.h>
+#include <cantera/clib/ct.h>
 #include "ctmatutils.h"
 #include <iostream>
 using namespace std;
diff --git a/Cantera/matlab/cantera/private/mllogger.h b/Cantera/matlab/src/mllogger.h
similarity index 100%
rename from Cantera/matlab/cantera/private/mllogger.h
rename to Cantera/matlab/src/mllogger.h
diff --git a/Cantera/matlab/cantera/private/onedimmethods.cpp b/Cantera/matlab/src/onedimmethods.cpp
similarity index 99%
rename from Cantera/matlab/cantera/private/onedimmethods.cpp
rename to Cantera/matlab/src/onedimmethods.cpp
index b284260ff..49f9cf3b8 100644
--- a/Cantera/matlab/cantera/private/onedimmethods.cpp
+++ b/Cantera/matlab/src/onedimmethods.cpp
@@ -1,7 +1,7 @@
 
 #include "mex.h"
 #include "ctmatutils.h"
-#include "../../../clib/src/ctonedim.h"
+#include <cantera/clib/ctonedim.h>
 
 #include <iostream>
 #include <string>
diff --git a/Cantera/matlab/cantera/private/phasemethods.cpp b/Cantera/matlab/src/phasemethods.cpp
similarity index 99%
rename from Cantera/matlab/cantera/private/phasemethods.cpp
rename to Cantera/matlab/src/phasemethods.cpp
index df75fa57e..f28779818 100644
--- a/Cantera/matlab/cantera/private/phasemethods.cpp
+++ b/Cantera/matlab/src/phasemethods.cpp
@@ -7,7 +7,7 @@
 
 #include "mex.h"
 #include "ctmatutils.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ct.h>
 
     void phasemethods( int nlhs, mxArray *plhs[],
         int nrhs, const mxArray *prhs[] )
diff --git a/Cantera/matlab/cantera/private/reactormethods.cpp b/Cantera/matlab/src/reactormethods.cpp
similarity index 97%
rename from Cantera/matlab/cantera/private/reactormethods.cpp
rename to Cantera/matlab/src/reactormethods.cpp
index b22cf37fb..c7dcbc197 100644
--- a/Cantera/matlab/cantera/private/reactormethods.cpp
+++ b/Cantera/matlab/src/reactormethods.cpp
@@ -6,8 +6,8 @@
  */
 
 #include "mex.h"
-#include "../../../clib/src/ctreactor.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ctreactor.h>
+#include <cantera/clib/ct.h>
 #include "ctmatutils.h"
 
     void reactormethods( int nlhs, mxArray *plhs[],
diff --git a/Cantera/matlab/cantera/private/reactornetmethods.cpp b/Cantera/matlab/src/reactornetmethods.cpp
similarity index 97%
rename from Cantera/matlab/cantera/private/reactornetmethods.cpp
rename to Cantera/matlab/src/reactornetmethods.cpp
index 27b678809..a39bd11ce 100644
--- a/Cantera/matlab/cantera/private/reactornetmethods.cpp
+++ b/Cantera/matlab/src/reactornetmethods.cpp
@@ -6,8 +6,8 @@
  */
 
 #include "mex.h"
-#include "../../../clib/src/ctreactor.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ctreactor.h>
+#include <cantera/clib/ct.h>
 #include "ctmatutils.h"
 
 //const double Undef = -999.123;
diff --git a/Cantera/matlab/cantera/private/surfmethods.cpp b/Cantera/matlab/src/surfmethods.cpp
similarity index 97%
rename from Cantera/matlab/cantera/private/surfmethods.cpp
rename to Cantera/matlab/src/surfmethods.cpp
index 6eb5f52f0..2292b724e 100644
--- a/Cantera/matlab/cantera/private/surfmethods.cpp
+++ b/Cantera/matlab/src/surfmethods.cpp
@@ -1,8 +1,8 @@
 
 #include "mex.h"
 #include "ctmatutils.h"
-#include "../../../clib/src/ctsurf.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ctsurf.h>
+#include <cantera/clib/ct.h>
 
 #include <iostream>
 #include <string>
diff --git a/Cantera/matlab/cantera/private/thermomethods.cpp b/Cantera/matlab/src/thermomethods.cpp
similarity index 99%
rename from Cantera/matlab/cantera/private/thermomethods.cpp
rename to Cantera/matlab/src/thermomethods.cpp
index c2fb43512..8165c2dc7 100644
--- a/Cantera/matlab/cantera/private/thermomethods.cpp
+++ b/Cantera/matlab/src/thermomethods.cpp
@@ -5,7 +5,7 @@
  * $Id: thermomethods.cpp,v 1.11 2009/07/11 16:43:13 hkmoffa Exp $
  */
 #include "mex.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ct.h>
 #include "ctmatutils.h"
 
 static void thermoset( int nlhs, mxArray *plhs[],
diff --git a/Cantera/matlab/cantera/private/transportmethods.cpp b/Cantera/matlab/src/transportmethods.cpp
similarity index 98%
rename from Cantera/matlab/cantera/private/transportmethods.cpp
rename to Cantera/matlab/src/transportmethods.cpp
index ab737f8e2..a2b9634b9 100644
--- a/Cantera/matlab/cantera/private/transportmethods.cpp
+++ b/Cantera/matlab/src/transportmethods.cpp
@@ -1,6 +1,6 @@
 
 #include "mex.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ct.h>
 #include "ctmatutils.h"
 #include <fstream>
 
diff --git a/Cantera/matlab/cantera/private/wallmethods.cpp b/Cantera/matlab/src/wallmethods.cpp
similarity index 97%
rename from Cantera/matlab/cantera/private/wallmethods.cpp
rename to Cantera/matlab/src/wallmethods.cpp
index 004b4c652..dd3a184e2 100644
--- a/Cantera/matlab/cantera/private/wallmethods.cpp
+++ b/Cantera/matlab/src/wallmethods.cpp
@@ -5,8 +5,8 @@
  *   $Id: wallmethods.cpp,v 1.5 2009/07/11 16:43:13 hkmoffa Exp $
  */
 #include "mex.h"
-#include "../../../clib/src/ctreactor.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ctreactor.h>
+#include <cantera/clib/ct.h>
 #include "ctmatutils.h"
 
 //const double Undef = -999.123;
diff --git a/Cantera/matlab/cantera/private/xmlmethods.cpp b/Cantera/matlab/src/xmlmethods.cpp
similarity index 98%
rename from Cantera/matlab/cantera/private/xmlmethods.cpp
rename to Cantera/matlab/src/xmlmethods.cpp
index 5cc4ed959..e20f746ba 100644
--- a/Cantera/matlab/cantera/private/xmlmethods.cpp
+++ b/Cantera/matlab/src/xmlmethods.cpp
@@ -6,8 +6,8 @@
  */
 
 #include "mex.h"
-#include "../../../clib/src/ctxml.h"
-#include "../../../clib/src/ct.h"
+#include <cantera/clib/ctxml.h>
+#include <cantera/clib/ct.h>
 #include "ctmatutils.h"
 
 void reportError();
diff --git a/Cantera/matlab/cantera/tutorial/README b/Cantera/matlab/tutorial/README
similarity index 100%
rename from Cantera/matlab/cantera/tutorial/README
rename to Cantera/matlab/tutorial/README
diff --git a/Cantera/matlab/cantera/tutorial/tut1.m b/Cantera/matlab/tutorial/tut1.m
similarity index 100%
rename from Cantera/matlab/cantera/tutorial/tut1.m
rename to Cantera/matlab/tutorial/tut1.m
diff --git a/Cantera/matlab/cantera/tutorial/tut2.m b/Cantera/matlab/tutorial/tut2.m
similarity index 100%
rename from Cantera/matlab/cantera/tutorial/tut2.m
rename to Cantera/matlab/tutorial/tut2.m
diff --git a/Cantera/matlab/cantera/tutorial/tut3.m b/Cantera/matlab/tutorial/tut3.m
similarity index 100%
rename from Cantera/matlab/cantera/tutorial/tut3.m
rename to Cantera/matlab/tutorial/tut3.m
diff --git a/Cantera/matlab/cantera/tutorial/tut4.m b/Cantera/matlab/tutorial/tut4.m
similarity index 100%
rename from Cantera/matlab/cantera/tutorial/tut4.m
rename to Cantera/matlab/tutorial/tut4.m
diff --git a/Cantera/matlab/cantera/tutorial/tut5.m b/Cantera/matlab/tutorial/tut5.m
similarity index 100%
rename from Cantera/matlab/cantera/tutorial/tut5.m
rename to Cantera/matlab/tutorial/tut5.m
diff --git a/Cantera/matlab/cantera/tutorial/tut6.m b/Cantera/matlab/tutorial/tut6.m
similarity index 100%
rename from Cantera/matlab/cantera/tutorial/tut6.m
rename to Cantera/matlab/tutorial/tut6.m
diff --git a/Cantera/matlab/cantera/tutorial/tut7.m b/Cantera/matlab/tutorial/tut7.m
similarity index 100%
rename from Cantera/matlab/cantera/tutorial/tut7.m
rename to Cantera/matlab/tutorial/tut7.m
diff --git a/SConstruct b/SConstruct
index d1b8d40fe..63c613caa 100644
--- a/SConstruct
+++ b/SConstruct
@@ -2,6 +2,7 @@ from buildutils import *
 import platform, sys, os
 
 env = Environment()
+env.AddMethod(RecursiveInstall)
 
 # ******************************************************
 # *** Set system-dependent defaults for some options ***
diff --git a/buildutils.py b/buildutils.py
index d5debb9e2..b2150020e 100644
--- a/buildutils.py
+++ b/buildutils.py
@@ -88,7 +88,6 @@ def mglob(env, subdir, *args):
         else:
             matches += env.Glob(pjoin(subdir, '*.%s' % ext))
     return matches
-#    return sum((env.Glob('%s/*.%s' % (subdir, ext)) for ext in args), [])
 
 
 def psplit(s):
@@ -100,3 +99,59 @@ def psplit(s):
 
     path.reverse()
     return path
+
+
+# This tool adds the builder:
+#
+#   env.RecursiveInstall(target, path)
+#
+# This is useful for doing:
+#
+#   k = env.RecursiveInstall(dir_target, dir_source)
+#
+# and if any thing in dir_source is updated the install is rerun
+#
+# It behaves similar to the env.Install builtin. However it expects
+# two directories and correctly sets up the dependencies between each
+# sub file instead of just between the two directories.
+#
+# Note in also traverses the in memory node tree for the source
+# directory and can detect things that are not built yet. Internally
+# we use the env.Glob function for this support.
+#
+# You can see the effect of this function by doing:
+#
+#   scons --tree=all,prune
+#
+# and see the one to one correspondence between source and target
+# files within each directory.
+
+def RecursiveInstall(env, target, dir):
+    nodes = _recursive_install(env, dir)
+
+    dir = env.Dir(dir).abspath
+    target = env.Dir(target).abspath
+
+    l = len(dir) + 1
+
+    relnodes = [n.abspath[l:] for n in nodes]
+
+    out = []
+    for n in relnodes:
+        t = os.path.join(target, n)
+        s = os.path.join(dir, n)
+        out.extend(env.InstallAs(env.File(t), env.File(s)))
+
+    return out
+
+def _recursive_install(env, path):
+    nodes = env.Glob(os.path.join(path, '*'), strings=False)
+    nodes.extend(env.Glob(os.path.join(path, '*.*'), strings=False))
+    out = []
+    for n in nodes:
+        if n.isdir():
+            out.extend(_recursive_install(env, n.abspath))
+        else:
+            out.append(n)
+
+    return out