diff --git a/CMakeLists.txt b/CMakeLists.txt
deleted file mode 100644
index 915661c8d..000000000
--- a/CMakeLists.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-PROJECT (Cantera)
-
-#----------------------------
-#     user-configurable settings
-#----------------------------
-INCLUDE (config_cantera.cmake)
-
-
-#----------------------------
-#     Python
-#----------------------------     
-#if (PYTHON_CMD STREQUAL "default")
-INCLUDE( FindPythonInterp )
-INCLUDE( FindPythonLibs)
-SET( PYTHON_EXE ${PYTHON_EXECUTABLE} )
-#else (PYTHON_CMD STREQUAL "default")
-#  SET( PYTHON_EXE ${PYTHON_CMD} )
-#endif (PYTHON_CMD STREQUAL "default")
-
-
-#---------------------------------------
-#      configuration
-#---------------------------------------
-CONFIGURE_FILE (
-    ${PROJECT_SOURCE_DIR}/config.h_cmake.in
-    ${PROJECT_BINARY_DIR}/config.h )
-
-
-#----------------------------------------
-#      output paths
-#----------------------------------------
-SET (LIBRARY_OUTPUT_PATH 
-   ${PROJECT_BINARY_DIR}/build/lib/${CMAKE_SYSTEM_PROCESSOR}-${CMAKE_SYSTEM_VERSION} CACHE PATH "Single directory for all libraries"
-  )
-
-SET (EXECUTABLE_OUTPUT_PATH 
-   ${PROJECT_BINARY_DIR}/build/bin/${CMAKE_SYSTEM_PROCESSOR}-${CMAKE_SYSTEM_VERSION} CACHE PATH "Single directory for all executables"
-  )
-
-MARK_AS_ADVANCED (
-  LIBRARY_OUTPUT_PATH
-  EXECUTABLE_OUTPUT_PATH
-  )
-
-INSTALL_FILES(/include/cantera/kernel FILES config.h)
-INSTALL_FILES(/include/cantera FILES config.h)
-ADD_SUBDIRECTORY (ext)
-ADD_SUBDIRECTORY (Cantera)
-
-SET(CMAKE_INSTALL_PREFIX /Applications/Cantera )
-INSTALL_FILES (  /include/cantera  .h  ${CANTERA_CXX_HEADERS} )
diff --git a/Cantera/CMakeLists.txt b/Cantera/CMakeLists.txt
deleted file mode 100644
index 82af06ff1..000000000
--- a/Cantera/CMakeLists.txt
+++ /dev/null
@@ -1,16 +0,0 @@
-#-------------------------------------------------
-#   Build the kernel
-#------------------------------------------------- 
-add_subdirectory(src)
-
-#-------------------------------------------------
-#   Build clib
-#------------------------------------------------- 
-add_subdirectory(clib)
-
-#-------------------------------------------------
-#   Build C++ user interface
-#-------------------------------------------------
-add_subdirectory(cxx)
-
-
diff --git a/Cantera/clib/CMakeLists.txt b/Cantera/clib/CMakeLists.txt
deleted file mode 100644
index febd4f0ab..000000000
--- a/Cantera/clib/CMakeLists.txt
+++ /dev/null
@@ -1 +0,0 @@
-add_subdirectory(src)
diff --git a/Cantera/clib/src/CMakeLists.txt b/Cantera/clib/src/CMakeLists.txt
deleted file mode 100644
index 65db2c787..000000000
--- a/Cantera/clib/src/CMakeLists.txt
+++ /dev/null
@@ -1,25 +0,0 @@
-SET (CLIB_SRCS ct.cpp Storage.cpp ctsurf.cpp ctrpath.cpp ctreactor.cpp
-                        ctfunc.cpp ctxml.cpp ctonedim.cpp ctmultiphase.cpp )
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR})
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/base)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/thermo)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/equil)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/numerics)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/kinetics)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/transport)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/converters)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/zeroD)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/oneD)
-
-# INCLUDE_DIRECTORIES (${PROJECT_BINARY_DIR}/build/include/cantera)
-
-ADD_LIBRARY ( clib ${CLIB_SRCS} )
-
-TARGET_LINK_LIBRARIES (clib oneD zeroD equil kinetics thermo ctbase)
-
-SET (CLIB_H  ct.h Storage.h ctsurf.h ctrpath.h ctreactor.h
-                        ctfunc.h ctxml.h ctonedim.h ctmultiphase.h )
-
-
-
diff --git a/Cantera/cmake_install.cmake b/Cantera/cmake_install.cmake
deleted file mode 100644
index 736794ad1..000000000
--- a/Cantera/cmake_install.cmake
+++ /dev/null
@@ -1,36 +0,0 @@
-# Install script for directory: /Users/dgg/dv/sf/cantera/Cantera
-
-# Set the install prefix
-IF(NOT DEFINED CMAKE_INSTALL_PREFIX)
-  SET(CMAKE_INSTALL_PREFIX "/usr/local")
-ENDIF(NOT DEFINED CMAKE_INSTALL_PREFIX)
-STRING(REGEX REPLACE "/$" "" CMAKE_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}")
-
-# Set the install configuration name.
-IF(NOT CMAKE_INSTALL_CONFIG_NAME)
-  IF(BUILD_TYPE)
-    STRING(REGEX REPLACE "^[^A-Za-z0-9_]+" ""
-           CMAKE_INSTALL_CONFIG_NAME "${BUILD_TYPE}")
-  ELSE(BUILD_TYPE)
-    SET(CMAKE_INSTALL_CONFIG_NAME "Debug")
-  ENDIF(BUILD_TYPE)
-  MESSAGE(STATUS "Install configuration: \"${CMAKE_INSTALL_CONFIG_NAME}\"")
-ENDIF(NOT CMAKE_INSTALL_CONFIG_NAME)
-
-# Set the component getting installed.
-IF(NOT CMAKE_INSTALL_COMPONENT)
-  IF(COMPONENT)
-    MESSAGE(STATUS "Install component: \"${COMPONENT}\"")
-    SET(CMAKE_INSTALL_COMPONENT "${COMPONENT}")
-  ELSE(COMPONENT)
-    SET(CMAKE_INSTALL_COMPONENT)
-  ENDIF(COMPONENT)
-ENDIF(NOT CMAKE_INSTALL_COMPONENT)
-
-IF(NOT CMAKE_INSTALL_LOCAL_ONLY)
-  # Include the install script for each subdirectory.
-  INCLUDE("/Users/dgg/dv/sf/cantera/Cantera/src/cmake_install.cmake")
-  INCLUDE("/Users/dgg/dv/sf/cantera/Cantera/clib/cmake_install.cmake")
-  INCLUDE("/Users/dgg/dv/sf/cantera/Cantera/cxx/cmake_install.cmake")
-
-ENDIF(NOT CMAKE_INSTALL_LOCAL_ONLY)
diff --git a/Cantera/cxx/CMakeLists.txt b/Cantera/cxx/CMakeLists.txt
deleted file mode 100644
index 32869e907..000000000
--- a/Cantera/cxx/CMakeLists.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-
-add_subdirectory( include )
-add_subdirectory( src )
-add_subdirectory( demos )
diff --git a/Cantera/cxx/cmake_install.cmake b/Cantera/cxx/cmake_install.cmake
deleted file mode 100644
index 53b031cef..000000000
--- a/Cantera/cxx/cmake_install.cmake
+++ /dev/null
@@ -1,36 +0,0 @@
-# Install script for directory: /Users/dgg/dv/sf/cantera/Cantera/cxx
-
-# Set the install prefix
-IF(NOT DEFINED CMAKE_INSTALL_PREFIX)
-  SET(CMAKE_INSTALL_PREFIX "/usr/local")
-ENDIF(NOT DEFINED CMAKE_INSTALL_PREFIX)
-STRING(REGEX REPLACE "/$" "" CMAKE_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}")
-
-# Set the install configuration name.
-IF(NOT CMAKE_INSTALL_CONFIG_NAME)
-  IF(BUILD_TYPE)
-    STRING(REGEX REPLACE "^[^A-Za-z0-9_]+" ""
-           CMAKE_INSTALL_CONFIG_NAME "${BUILD_TYPE}")
-  ELSE(BUILD_TYPE)
-    SET(CMAKE_INSTALL_CONFIG_NAME "Debug")
-  ENDIF(BUILD_TYPE)
-  MESSAGE(STATUS "Install configuration: \"${CMAKE_INSTALL_CONFIG_NAME}\"")
-ENDIF(NOT CMAKE_INSTALL_CONFIG_NAME)
-
-# Set the component getting installed.
-IF(NOT CMAKE_INSTALL_COMPONENT)
-  IF(COMPONENT)
-    MESSAGE(STATUS "Install component: \"${COMPONENT}\"")
-    SET(CMAKE_INSTALL_COMPONENT "${COMPONENT}")
-  ELSE(COMPONENT)
-    SET(CMAKE_INSTALL_COMPONENT)
-  ENDIF(COMPONENT)
-ENDIF(NOT CMAKE_INSTALL_COMPONENT)
-
-IF(NOT CMAKE_INSTALL_LOCAL_ONLY)
-  # Include the install script for each subdirectory.
-  INCLUDE("/Users/dgg/dv/sf/cantera/Cantera/cxx/include/cmake_install.cmake")
-  INCLUDE("/Users/dgg/dv/sf/cantera/Cantera/cxx/src/cmake_install.cmake")
-  INCLUDE("/Users/dgg/dv/sf/cantera/Cantera/cxx/demos/cmake_install.cmake")
-
-ENDIF(NOT CMAKE_INSTALL_LOCAL_ONLY)
diff --git a/Cantera/cxx/demos/CMakeLists.txt b/Cantera/cxx/demos/CMakeLists.txt
deleted file mode 100644
index 44fce4f14..000000000
--- a/Cantera/cxx/demos/CMakeLists.txt
+++ /dev/null
@@ -1,13 +0,0 @@
-SET (COMBUST_SRCS combustor.cpp)
-
-INCLUDE_DIRECTORIES (${PROJECT_BINARY_DIR}/build/include)
-INCLUDE_DIRECTORIES (${PROJECT_BINARY_DIR})
-
-ADD_EXECUTABLE(combustor.x ${COMBUST_SRCS})
-TARGET_LINK_LIBRARIES ( combustor.x zeroD kinetics thermo ctbase tpx cvode )
-
-ADD_EXECUTABLE(flamespeed.x flamespeed.cpp )
-TARGET_LINK_LIBRARIES ( flamespeed.x oneD equil transport kinetics numerics 
-                                         thermo ctbase tpx ctmath ctlapack ctblas ctf2c )
-
-
diff --git a/Cantera/cxx/include/CMakeLists.txt b/Cantera/cxx/include/CMakeLists.txt
deleted file mode 100644
index c073b848f..000000000
--- a/Cantera/cxx/include/CMakeLists.txt
+++ /dev/null
@@ -1,8 +0,0 @@
-SET(CXX_H  Cantera.h  equilibrium.h  IncompressibleSolid.h 
-        kinetics.h onedim.h  surface.h GRI30.h  integrators.h 
-        Metal.h   PureFluid.h   transport.h Edge.h  
-        IdealGasMix.h  Interface.h    numerics.h  
-        reactionpaths.h  zerodim.h importPhase.h thermo.h 
-        radiation.h spectra.h)
-
-INSTALL_FILES(/include/cantera FILES ${CXX_H})
diff --git a/Cantera/cxx/src/CMakeLists.txt b/Cantera/cxx/src/CMakeLists.txt
deleted file mode 100644
index 4f5e4bdec..000000000
--- a/Cantera/cxx/src/CMakeLists.txt
+++ /dev/null
@@ -1,6 +0,0 @@
-SET ( CXX_SRCS importPhase.cpp )
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR})
-INCLUDE_DIRECTORIES (${PROJECT_BINARY_DIR}/build/include/cantera/kernel)
-
-ADD_LIBRARY (ctcxx ${CXX_SRCS})
diff --git a/Cantera/python/CMakeLists.txt b/Cantera/python/CMakeLists.txt
deleted file mode 100644
index 2cc858d90..000000000
--- a/Cantera/python/CMakeLists.txt
+++ /dev/null
@@ -1 +0,0 @@
-add_subdirectory (src)
diff --git a/Cantera/src/CMakeLists.txt b/Cantera/src/CMakeLists.txt
deleted file mode 100644
index 814022fc2..000000000
--- a/Cantera/src/CMakeLists.txt
+++ /dev/null
@@ -1,11 +0,0 @@
-add_subdirectory(base)
-add_subdirectory(thermo)
-add_subdirectory(numerics)
-add_subdirectory(kinetics)
-add_subdirectory(transport)
-add_subdirectory(equil)
-add_subdirectory(spectra)
-
-add_subdirectory(oneD)
-add_subdirectory(zeroD)
-
diff --git a/Cantera/src/base/CMakeLists.txt b/Cantera/src/base/CMakeLists.txt
deleted file mode 100644
index 9e2b6d60d..000000000
--- a/Cantera/src/base/CMakeLists.txt
+++ /dev/null
@@ -1,12 +0,0 @@
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR})
-
-SET (CTBASE_SRCS misc.cpp ct2ctml.cpp ctml.cpp 
-                             plots.cpp stringUtils.cpp xml.cpp clockWC.cpp)
-ADD_LIBRARY(ctbase ${CTBASE_SRCS})
-
-SET (CTBASE_H global.h ctml.h 
-                       ct_defs.h ctexceptions.h logger.h XML_Writer.h 
-                       ctml.h plots.h stringUtils.h xml.h utilities.h 
-                       Array.h vec_functions.h global.h FactoryBase.h clockWC.h )
-INSTALL_FILES(/include/cantera/kernel FILES ${CTBASE_H})
diff --git a/Cantera/src/equil/CMakeLists.txt b/Cantera/src/equil/CMakeLists.txt
deleted file mode 100644
index a627c2584..000000000
--- a/Cantera/src/equil/CMakeLists.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-SET (EQUIL_SRCS BasisOptimize.cpp ChemEquil.cpp MultiPhase.cpp MultiPhaseEquil.cpp
-       equilibrate.cpp )
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR})
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/base)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/thermo)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/numerics)
-
-ADD_LIBRARY(equil  ${EQUIL_SRCS} )
-TARGET_LINK_LIBRARIES( equil numerics thermo ctbase)
-
-SET(EQUIL_H  ChemEquil.h MultiPhase.h MultiPhaseEquil.h equil.h PropertyCalculator.h)
-INSTALL_FILES(/include/cantera/kernel FILES ${EQUIL_H})
-
diff --git a/Cantera/src/kinetics/CMakeLists.txt b/Cantera/src/kinetics/CMakeLists.txt
deleted file mode 100644
index ef97e31a7..000000000
--- a/Cantera/src/kinetics/CMakeLists.txt
+++ /dev/null
@@ -1,22 +0,0 @@
-SET (KINETICS_SRCS importKinetics.cpp GRI_30_Kinetics.cpp KineticsFactory.cpp
-            GasKinetics.cpp FalloffFactory.cpp ReactionStoichMgr.cpp Kinetics.cpp 
-            solveSP.cpp InterfaceKinetics.cpp ImplicitSurfChem.cpp Group.cpp 
-            ReactionPath.cpp)
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR})
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/base)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/thermo)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/numerics)
-
-ADD_LIBRARY(kinetics ${KINETICS_SRCS})
-
-TARGET_LINK_LIBRARIES (kinetics numerics thermo ctbase)
-
-SET(KINETICS_H  importKinetics.h GRI_30_Kinetics.h KineticsFactory.h 
-             Kinetics.h GasKinetics.h 
-             FalloffFactory.h  ReactionStoichMgr.h reaction_defs.h 
-             FalloffMgr.h ThirdBodyMgr.h RateCoeffMgr.h ReactionData.h 
-             RxnRates.h Enhanced3BConc.h StoichManager.h solveSP.h InterfaceKinetics.h
-             ImplicitSurfChem.h EdgeKinetics.h Group.h ReactionPath.h)
-
-INSTALL_FILES(/cantera/kernel FILES ${KINETICS_H})
diff --git a/Cantera/src/numerics/CMakeLists.txt b/Cantera/src/numerics/CMakeLists.txt
deleted file mode 100644
index d7c452775..000000000
--- a/Cantera/src/numerics/CMakeLists.txt
+++ /dev/null
@@ -1,16 +0,0 @@
-SET (NUMERICS_SRCS  DenseMatrix.cpp funcs.cpp Func1.cpp 
-                 ODE_integrators.cpp  BandMatrix.cpp DAE_solvers.cpp 
-                 sort.cpp  )
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR})
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/base)
-
-ADD_LIBRARY(numerics ${NUMERICS_SRCS})
-
-TARGET_LINK_LIBRARIES (numerics ctbase cvode)
-
-SET(NUMERICS_H ArrayViewer.h CVodeInt.h CVodesIntegrator.h DenseMatrix.h 
-                 funcs.h ctlapack.h Func1.h FuncEval.h 
-                 polyfit.h
-                 BandMatrix.h Integrator.h DAE_Solver.h ResidEval.h sort.h)
-INSTALL_FILES( /include/cantera/kernel FILES ${NUMERICS_H})
diff --git a/Cantera/src/oneD/CMakeLists.txt b/Cantera/src/oneD/CMakeLists.txt
deleted file mode 100644
index 63ed9d6ab..000000000
--- a/Cantera/src/oneD/CMakeLists.txt
+++ /dev/null
@@ -1,18 +0,0 @@
-SET (ONED_SRCS  MultiJac.cpp MultiNewton.cpp newton_utils.cpp OneDim.cpp
-          StFlow.cpp boundaries1D.cpp refine.cpp Sim1D.cpp Domain1D.cpp )
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR})
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/base)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/thermo)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/numerics)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/kinetics)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/transport)
-
-ADD_LIBRARY(oneD  ${ONED_SRCS} )
-
-SET (ONED_H  Inlet1D.h   MultiJac.h  Sim1D.h     StFlow.h
-          Surf1D.h    Domain1D.h  MultiNewton.h   OneDim.h
-          Resid1D.h   Solid1D.h   refine.h)
-
-INSTALL_FILES(/include/cantera/kernel FILES ${ONED_H})
-
diff --git a/Cantera/src/spectra/CMakeLists.txt b/Cantera/src/spectra/CMakeLists.txt
deleted file mode 100644
index 9b8a58746..000000000
--- a/Cantera/src/spectra/CMakeLists.txt
+++ /dev/null
@@ -1,13 +0,0 @@
-SET (SPECTRA_SRCS  rotor.cpp LineBroadener.cpp spectralUtilities.cpp)
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR})
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/base)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/thermo)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/numerics)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/transport)
-
-ADD_LIBRARY(spectra  ${SPECTRA_SRCS} )
-
-SET (SPECTRA_H  rotor.h LineBroadener.h Nuclei.h spectralUtilities.h)
-INSTALL_FILES(/include/cantera/kernel FILES ${SPECTRA_H})
-
diff --git a/Cantera/src/thermo/CMakeLists.txt b/Cantera/src/thermo/CMakeLists.txt
deleted file mode 100644
index abd385e16..000000000
--- a/Cantera/src/thermo/CMakeLists.txt
+++ /dev/null
@@ -1,30 +0,0 @@
-SET (THERMO_SRCS State.cpp Elements.cpp Constituents.cpp Phase.cpp 
-             ThermoPhase.cpp IdealGasPhase.cpp ConstDensityThermo.cpp 
-             SpeciesThermoFactory.cpp ConstCpPoly.cpp Nasa9Poly1.cpp 
-             Nasa9PolyMultiTempRegion.cpp 
-             Mu0Poly.cpp GeneralSpeciesThermo.cpp SurfPhase.cpp 
-             ThermoFactory.cpp phasereport.cpp  SemiconductorPhase.cpp 
-             StoichSubstance.cpp PureFluidPhase.cpp LatticeSolidPhase.cpp 
-             LatticePhase.cpp)
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR})
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/base)
-
-ADD_LIBRARY(thermo ${THERMO_SRCS})
-
-TARGET_LINK_LIBRARIES (thermo ctbase)
-
-SET(THERMO_H   State.h Elements.h Constituents.h Phase.h mix_defs.h 
-             ThermoPhase.h IdealGasPhase.h ConstDensityThermo.h 
-             SpeciesThermoFactory.h ThermoFactory.h 
-             NasaPoly1.h NasaPoly2.h NasaThermo.h Nasa9Poly1.h 
-             Nasa9PolyMultiTempRegion.h 
-             ShomateThermo.h ShomatePoly.h ConstCpPoly.h 
-             SimpleThermo.h SpeciesThermoMgr.h 
-             SpeciesThermoInterpType.h 
-             GeneralSpeciesThermo.h Mu0Poly.h 
-             speciesThermoTypes.h SpeciesThermo.h SurfPhase.h 
-             EdgePhase.h )
-#             @phase_header_files@)
-
-INSTALL_FILES(/include/cantera/kernel FILES ${THERMO_H})
diff --git a/Cantera/src/transport/CMakeLists.txt b/Cantera/src/transport/CMakeLists.txt
deleted file mode 100644
index cfe392c18..000000000
--- a/Cantera/src/transport/CMakeLists.txt
+++ /dev/null
@@ -1,18 +0,0 @@
-SET (TRANSPORT_SRCS  TransportFactory.cpp MultiTransport.cpp MixTransport.cpp
-                                      MMCollisionInt.cpp SolidTransport.cpp DustyGasTransport.cpp)
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR})
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/base)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/thermo)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/numerics)
-
-ADD_LIBRARY(transport ${TRANSPORT_SRCS})
-
-TARGET_LINK_LIBRARIES (transport numerics thermo ctbase)
-
-SET (TRANSPORT_H   TransportFactory.h MultiTransport.h MixTransport.h 
-       		       MMCollisionInt.h  SolidTransport.h DustyGasTransport.h 
-           	       TransportBase.h L_matrix.h TransportParams.h )
-INSTALL_FILES(/include/cantera/kernel FILES ${TRANSPORT_H})
-
-
diff --git a/Cantera/src/zeroD/CMakeLists.txt b/Cantera/src/zeroD/CMakeLists.txt
deleted file mode 100644
index b30aa2755..000000000
--- a/Cantera/src/zeroD/CMakeLists.txt
+++ /dev/null
@@ -1,16 +0,0 @@
-SET (ZEROD_SRCS Reactor.cpp ReactorBase.cpp FlowDevice.cpp Wall.cpp ReactorNet.cpp
-      FlowReactor.cpp ConstPressureReactor.cpp ReactorFactory.cpp )
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR})
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/base)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/thermo)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/numerics)
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/Cantera/src/kinetics)
-
-ADD_LIBRARY(zeroD  ${ZEROD_SRCS} )
-
-SET (ZEROD_H Reactor.h ReactorBase.h FlowDevice.h Wall.h ReactorNet.h
-          flowControllers.h Reservoir.h FlowReactor.h
-          ConstPressureReactor.h ReactorFactory.h )
-INSTALL_FILES(/include/cantera/kernel FILES ${ZEROD_H})
-
diff --git a/cmake/fortran.cmake b/cmake/fortran.cmake
deleted file mode 100644
index 21e62eb18..000000000
--- a/cmake/fortran.cmake
+++ /dev/null
@@ -1,15 +0,0 @@
-#### Cantera Fortran configuration file
-
-#if (NOT BUILD_WITH_F2C)
-
-#### Fortran 90
-message("Fortran cmake")
-
-if (BUILD_F90_INTERFACE)
-    if (F90 STREQUAL "default")
-         FIND_LIBRARY(GFORTRAN_LIB  gfortran ${F90_LIB_DIR} /usr/local/lib)
-         IF (GFORTRAN_LIB)
-             MESSAGE("${GFORTRAN_LIB}")
-         ENDIF (GFORTRAN_LIB)
-    endif (F90 STREQUAL "default")
-endif (BUILD_F90_INTERFACE)
diff --git a/config.cmake b/config.cmake
deleted file mode 100755
index e29ab0219..000000000
--- a/config.cmake
+++ /dev/null
@@ -1,25 +0,0 @@
-
-OPTION(CANTERA_BUILD_PYTHON_IFACE "Build the Python user interface?" ON)
-OPTION(CANTERA_BUILD_CXX_IFACE "Build the C++ user interface?" ON)
-OPTION(CANTERA_BUILD_F90_IFACE "Build the Fortran 90 user interface?" ON)
-OPTION(CANTERA_BUILD_CXX_IFACE "Build the Matlab Toolbox?" OFF)
-OPTION(CANTERA_BUILD_WITH_F2C "Use f2c versions of 3rd party numerical routines" OFF)
-
-OPTION (CANTERA_BUILD_LAPACK  0)
-OPTION (CANTERA_HAVE_SUNDIALS 1)
-
-# SET(PYTHON_CMD ${PYTHON_EXE})
-
-SET(CANTERA_VERSION "1.7.1")
-
-SET( WITH_PURE_FLUIDS  1 )
-
-SET( WITH_LATTICE_SOLID 1 )
-
-SET( WITH_METAL 1 )
-
-SET( WITH_STOICH_SUBSTANCE 1 )
-
-SET( WITH_IDEAL_SOLUTIONS 0 )
-
-SET(WITH_ELECTROLYTES 0 )
diff --git a/config.h_cmake.in b/config.h_cmake.in
deleted file mode 100644
index 17b681840..000000000
--- a/config.h_cmake.in
+++ /dev/null
@@ -1,140 +0,0 @@
-//
-// Input file for CMAKE to generate config.h
-//
-
-
-#ifndef CT_CONFIG_H
-#define CT_CONFIG_H
-
-
-//------------------------ Development flags ------------------//
-//
-// Compile in additional debug printing where available.
-// Note, the printing may need to be turned on via a switch.
-// This just compiles in the code.
-#cmakedefine DEBUG_MODE
-
-// define types doublereal, integer, and ftnlen to match the 
-// corresponding Fortran data types on your system. The defaults
-// are OK for most systems
-
-typedef  double       doublereal;   // Fortran double precision 
-typedef  int          integer;      // Fortran integer
-typedef  int          ftnlen;       // Fortran hidden string length type
-
-
-// Fortran compilers pass character strings in argument lists by
-// adding a hidden argement with the length of the string. Some
-// compilers add the hidden length argument immediately after the
-// CHARACTER variable being passed, while others put all of the hidden
-// length arguments at the end of the argument list. Define this if 
-// the lengths are at the end of the argument list. This is usually the
-// case for most unix Fortran compilers, but is (by default) false for
-// Visual Fortran under Windows.
-#cmakedefine STRING_LEN_AT_END
-
-
-// Define this if Fortran adds a trailing underscore to names in object files.
-// For linux and most unix systems, this is the case.
-#cmakedefine FTN_TRAILING_UNDERSCORE
-
-
-#cmakedefine HAS_SUNDIALS
-#cmakedefine SUNDIALS_VERSION_22
-#cmakedefine SUNDIALS_VERSION_23
-
-//-------- LAPACK / BLAS ---------
-
-#define LAPACK_FTN_STRING_LEN_AT_END
-#define LAPACK_NAMES_LOWERCASE
-#define LAPACK_FTN_TRAILING_UNDERSCORE
-
-
-//--------- operating system --------------------------------------
-
-// The configure script defines this if the operatiing system is Mac
-// OS X, This used to add some Mac-specific directories to the default
-// data file search path.
-#cmakedefine DARWIN
-#cmakedefine HAS_SSTREAM
-
-// Cantera version
-#define CANTERA_VERSION "@CANTERA_VERSION@"
-
-// Identify whether the operating system is cygwin's overlay of
-// windows, with gcc being used as the compiler.
-#cmakedefine CYGWIN
-
-// Identify whether the operating system is windows based, with
-// microsoft vc++ being used as the compiler
-#cmakedefine WINMSVC
-
-//--------- Fonts for reaction path diagrams ----------------------
-#define RXNPATH_FONT Helvetica
-
-//--------------------- Python ------------------------------------
-// This path to the python executable is created during
-// Cantera's setup. It identifies the python executable 
-// used to run Python to process .cti files. Note that this is only
-// used if environment variable PYTHON_CMD is not set.
-#define PYTHON_EXE "@PYTHON_EXE@"
-
-// If this is defined, the Cantera Python interface will use the
-// Numeric package; otherwise, it will use numarray.
-#cmakedefine HAS_NUMERIC
-
-// If this is defined, then python will not be assumed to be
-// present to support conversions
-#cmakedefine HAS_NO_PYTHON
-
-//--------------------- Cantera ----------------------------------- 
-// This is the data pathway used to locate the top of the 
-// build directory.
-#cmakedefine CANTERA_ROOT
-
-// This data pathway is used to locate a directory where datafiles
-// are to be found. Note, the local directory is always searched
-// as well. 
-#cmakedefine CANTERA_DATA
-
-
-#cmakedefine WITH_HTML_LOGS
-
-// define STORE_MOLE_FRACTIONS if you want Cantera to internally
-// represent the composition of a mixture as mole fractions. Usually
-// the best choice.
-#define STORE_MOLE_FRACTIONS
-
-// define STORE_MASS_FRACTIONS if you want Cantera to internally
-// represent the composition of a mixture as mass fractions. Usually
-// results in slightly worse performance, but may not in all cases.
-//#define STORE_MASS_FRACTIONS
-#cmakedefine STORE_MASS_FRACTIONS
-
-//--------------------- compile options ----------------------------
-#cmakedefine USE_PCH
-
-#cmakedefine THREAD_SAFE_CANTERA
-
-//--------------------- optional phase models ----------------------
-//    This define indicates the enabling of the inclusion of
-//    accurate liquid/vapor equations
-//    of state for several fluids, including water, nitrogen, hydrogen,
-//    oxygen, methane, andd HFC-134a.
-#cmakedefine INCL_PURE_FLUIDS
-#cmakedefine WITH_PURE_FLUIDS
-
-#cmakedefine WITH_LATTICE_SOLID
-#cmakedefine WITH_METAL
-#cmakedefine WITH_STOICH_SUBSTANCE
-//    Enable expanded thermodynamic capabilities, adding
-//    ideal solid solutions
-#cmakedefine WITH_IDEAL_SOLUTIONS
-//    Enable expanded electrochemistry capabilities, include thermo
-//    models for electrolyte solutions.
-#cmakedefine WITH_ELECTROLYTES
-
-#cmakedefine WITH_PRIME
-
-
-#endif
diff --git a/config_cantera.cmake b/config_cantera.cmake
deleted file mode 100644
index 075d86bc3..000000000
--- a/config_cantera.cmake
+++ /dev/null
@@ -1,22 +0,0 @@
-
-OPTION(BUILD_PYTHON_PACKAGE "Build the Python user interface?" ON)
-OPTION(BUILD_CXX_INTERFACE "Build the C++ user interface?" ON)
-OPTION(BUILD_F90_INTERFACE "Build the Fortran 90 user interface?" ON)
-OPTION(BUILD_MATLAB_TOOLBOX "Build the Matlab Toolbox?" OFF)
-
-OPTION(CANTERA_BUILD_WITH_F2C "Use f2c versions of 3rd party numerical routines" ON)
-
-OPTION (BUILD_LAPACK "Build the lapack library?" 1)
-OPTION (HAVE_SUNDIALS "Use Sundials from LLNL?" 0)
-
-# SET(PYTHON_CMD ${PYTHON_EXE})
-
-SET(CANTERA_VERSION "1.7.2")
-
-
-SET( WITH_PURE_FLUIDS  1 )
-SET( WITH_LATTICE_SOLID 1 )
-SET( WITH_METAL 1 )
-SET( WITH_STOICH_SUBSTANCE 1 )
-SET( WITH_IDEAL_SOLUTIONS 0 )
-SET(WITH_ELECTROLYTES 0 )
diff --git a/ext/CMakeLists.txt b/ext/CMakeLists.txt
deleted file mode 100644
index 42207b639..000000000
--- a/ext/CMakeLists.txt
+++ /dev/null
@@ -1,12 +0,0 @@
-SET (CMAKE_C_FLAGS  -DSkip_f2c_Undefs)
-
-INCLUDE_DIRECTORIES (${PROJECT_SOURCE_DIR}/ext/f2c_libs )
-
-add_subdirectory ( f2c_libs )
-add_subdirectory ( f2c_blas )
-add_subdirectory ( f2c_lapack )
-add_subdirectory ( f2c_math )
-add_subdirectory ( cvode )
-add_subdirectory ( tpx )
-
-
diff --git a/ext/f2c_blas/CMakeLists.txt b/ext/f2c_blas/CMakeLists.txt
deleted file mode 100644
index e8b1644c7..000000000
--- a/ext/f2c_blas/CMakeLists.txt
+++ /dev/null
@@ -1,11 +0,0 @@
-SET (F2C_BLAS_SRCS  dasum.c  daxpy.c  dcabs1.c  dcopy.c  ddot.c  
-dgbmv.c  dgemm.c  dgemv.c  dger.c  dnrm2.c  drot.c  drotg.c  
-drotm.c  drotmg.c  dsbmv.c  dscal.c  dsdot.c  dspmv.c  dspr.c  dspr2.c  
-dswap.c  dsymm.c  dsymv.c  dsyr.c  dsyr2.c  dsyr2k.c  dsyrk.c  dtbmv.c  
-dtbsv.c  dtpmv.c  dtpsv.c  dtrmm.c  dtrmv.c  dtrsm.c  dtrsv.c  
-dzasum.c  dznrm2.c  idamax.c  lsame.c  xerbla.c )
-
-INCLUDE_DIRECTORIES ( ${PROJECT_SOURCE_DIR}/ext/f2c_libs )
-ADD_LIBRARY(ctblas ${F2C_BLAS_SRCS})
-
-
diff --git a/ext/f2c_lapack/CMakeLists.txt b/ext/f2c_lapack/CMakeLists.txt
deleted file mode 100644
index 6b65c3df4..000000000
--- a/ext/f2c_lapack/CMakeLists.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-
-SET (F2C_LAPACK_SRCS  dgbtrf.c  dgbtrs.c  dgbtf2.c dgbsv.c  
-   dgebd2.c   dgebrd.c   dgelq2.c   dgelqf.c   dgelss.c   dgeqr2.c   dgeqrf.c   dgetf2.c  
-   dgetrf.c   dgetri.c   dgetrs.c   dlabad.c   dlabrd.c   dlacpy.c   dlamch.c  dlange.c  
-   dlapy2.c  dlarf.c  dlarfb.c  dlarfg.c  dlarft.c  dlartg.c  dlas2.c  dlascl.c  dlaset.c  
-   dlasq1.c  dlasq2.c  dlasq3.c  dlasq4.c  dlasq5.c  dlasq6.c  dlasr.c  dlasrt.c  
-   dlassq.c   dlasv2.c  dlaswp.c  dorg2r.c  dorgbr.c  dorgl2.c  dorglq.c  dorgqr.c  
-   dorm2r.c  dormbr.c  dorml2.c  dormlq.c  dormqr.c  drscl.c  dtrtri.c  
-   dtrti2.c  ieeeck.c  ilaenv.c  )
-
-ADD_LIBRARY(ctlapack ${F2C_LAPACK_SRCS})
-
-
-
diff --git a/ext/f2c_libs/CMakeLists.txt b/ext/f2c_libs/CMakeLists.txt
deleted file mode 100644
index 1a481d2f8..000000000
--- a/ext/f2c_libs/CMakeLists.txt
+++ /dev/null
@@ -1,39 +0,0 @@
-SET (F2C_LIB_SRCS  f77vers.c  i77vers.c  main.c  s_rnge.c  abort_.c 
-                               exit_.c  getarg_.c  iargc_.c
-	                       getenv_.c  signal_.c  s_stop.c  s_paus.c 
-                               system_.c  cabs.c
-	                       derf_.c  derfc_.c  erf_.c  erfc_.c  sig_die.c  uninit.c
-                               pow_ci.c pow_dd.c pow_di.c pow_hh.c 
-                               pow_ii.c pow_ri.c pow_zi.c pow_zz.c
-                               c_abs.c c_cos.c c_div.c c_exp.c c_log.c c_sin.c 
-                               c_sqrt.c
-                               z_abs.c z_cos.c z_div.c z_exp.c z_log.c z_sin.c 
-                               z_sqrt.c
-                                r_abs.c r_acos.c r_asin.c r_atan.c r_atn2.c 
-                                r_cnjg.c r_cos.c
-	                        r_cosh.c r_dim.c r_exp.c r_imag.c r_int.c 
-                                r_lg10.c r_log.c r_mod.c r_nint.c r_sign.c
-	                        r_sin.c r_sinh.c r_sqrt.c r_tan.c r_tanh.c
-                                d_abs.c d_acos.c d_asin.c d_atan.c d_atn2.c
-                                d_cnjg.c d_cos.c d_cosh.c d_dim.c d_exp.c 
-                                d_imag.c d_int.c d_lg10.c d_log.c d_mod.c
-	                        d_nint.c d_prod.c d_sign.c d_sin.c d_sinh.c
-                                d_sqrt.c d_tan.c d_tanh.c i_abs.c i_dim.c 
-                                 i_dnnt.c i_indx.c i_len.c i_mod.c i_nint.c i_sign.c
-                                 lbitbits.c lbitshft.c h_abs.c h_dim.c h_dnnt.c 
-                                 h_indx.c h_len.c h_mod.c h_nint.c h_sign.c
-                                 l_ge.c l_gt.c l_le.c l_lt.c hl_ge.c hl_gt.c 
-                                 hl_le.c hl_lt.c ef1asc_.c ef1cmc_.c 
-                                 f77_aloc.c s_cat.c s_cmp.c s_copy.c
-                                 backspac.c close.c dfe.c dolio.c due.c 
-                                 endfile.c err.c
-	                         fmt.c fmtlib.c ftell_.c iio.c ilnw.c 
-                                 inquire.c lread.c lwrite.c 
-	                         open.c rdfmt.c rewind.c rsfe.c rsli.c 
-                                 rsne.c sfe.c sue.c
-	                         typesize.c uio.c util.c wref.c wrtfmt.c 
-                                 wsfe.c wsle.c wsne.c xwsne.c
-                                 dtime_.c etime_.c)
-
-ADD_LIBRARY(ctf2c ${F2C_LIB_SRCS})
-
diff --git a/ext/f2c_math/CMakeLists.txt b/ext/f2c_math/CMakeLists.txt
deleted file mode 100644
index 98fd72cb1..000000000
--- a/ext/f2c_math/CMakeLists.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-SET ( CTMATH_SRCS  mach.cpp  ddaspk.c  dgbefa.c  dgbsl.c  dgefa.c  dgesl.c 
-         dp1vlu.c dpcoef.c  dpolft.c fdump.c j4save.c pcoef.c polfit.c pvalue.c 
-         xercnt.c xerhlt.c xermsg.c xerprn.c xersve.c  xgetua.c printstring.c)
-
-INCLUDE_DIRECTORIES ( ${PROJECT_SOURCE_DIR} 
-                      ${PROJECT_SOURCE_DIR}/ext/f2c_libs ) 
-
-ADD_LIBRARY( ctmath ${CTMATH_SRCS} )
-
diff --git a/ext/tpx/CMakeLists.txt b/ext/tpx/CMakeLists.txt
deleted file mode 100644
index ed9f405d9..000000000
--- a/ext/tpx/CMakeLists.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-SET ( TPX_SRCS  HFC134a.cpp Heptane.cpp Hydrogen.cpp Methane.cpp 
-        Nitrogen.cpp  Oxygen.cpp  RedlichKwong.cpp   CarbonDioxide.cpp 
-        Sub.cpp Water.cpp utils.cpp lk.cpp )
-
-INCLUDE_DIRECTORIES ( ${PROJECT_BINARY_DIR} ) 
-#IINCLUDE_DIRECTORIES ( ${PROJECT_BINARY_DIR}/build/include/cantera ) 
-
-ADD_LIBRARY( tpx ${TPX_SRCS}  )
-