[cantera]: adding a few more files to the thermodynamics library

This commit is contained in:
Nicholas Malaya 2012-02-01 23:04:04 +00:00
parent 5efce48bca
commit 91273bddee
7 changed files with 574 additions and 132 deletions

View file

@ -12,7 +12,6 @@ cc_sources = importKinetics.cpp GRI_30_Kinetics.cpp KineticsFactory.cpp \
ReactionPath.cpp InterfaceKinetics.cpp ImplicitSurfChem.cpp \
Group.cpp
#AM_CPPFLAGS = -I../base -I../thermo -I../../../
AM_CPPFLAGS = -I$(top_builddir)/build/include/ -I$(top_builddir)/build/include/cantera -I$(top_builddir)/build/include/cantera/kernel
AM_CXXFLAGS = $(AM_CPPFLAGS)

View file

@ -15,7 +15,12 @@ h_sources = State.h Elements.h Constituents.h Phase.h mix_defs.h \
VPStandardStateTP.h PDSS_Water.h PDSS.h WaterProps.h \
WaterPropsIAPWSphi.h VPSSMgr_Water_HKFT.h PDSS_HKFT.h \
PDSS_IonsFromNeutral.h IonsFromNeutralVPSSTP.h \
GibbsExcessVPSSTP.h
GibbsExcessVPSSTP.h LatticePhase.h IdealMolalSoln.h \
PDSS.h HMWSoln.h WaterSSTP.h MetalSHEelectrons.h \
VPSSMgr_Water_ConstVol.h VPSSMgr_Water_HKFT.h \
IdealSolidSolnPhase.h StoichSubstanceSSTP.h \
SingleSpeciesTP.h MineralEQ3.h PseudoBinaryVPSSTP.h \
MargulesVPSSTP.cpp
cc_sources = State.cpp Elements.cpp Constituents.cpp Phase.cpp \
ThermoPhase.cpp IdealGasPhase.cpp ConstDensityThermo.cpp \
@ -30,46 +35,12 @@ cc_sources = State.cpp Elements.cpp Constituents.cpp Phase.cpp \
WaterProps.cpp WaterPropsIAPWS.cpp WaterPropsIAPWSphi.cpp \
VPSSMgr_Water_HKFT.cpp VPSSMgr_Water_ConstVol.cpp \
PDSS_IonsFromNeutral.cpp IonsFromNeutralVPSSTP.cpp \
GibbsExcessVPSSTP.cpp
# semiconductorphase
# stoich substance
# pure fluid phase
# lattice solide phase
# lattice phase
#
# g++ -c VPStandardStateTP.cpp -O3 -Wall -fPIC -I../base
# g++ -c IdealMolalSoln.cpp -O3 -Wall -fPIC -I../base
# g++ -c WaterPropsIAPWSphi.cpp -O3 -Wall -fPIC -I../base
# g++ -c WaterPropsIAPWS.cpp -O3 -Wall -fPIC -I../base
# g++ -c WaterProps.cpp -O3 -Wall -fPIC -I../base
# g++ -c PDSS.cpp -O3 -Wall -fPIC -I../base
# g++ -c PDSS_Water.cpp -O3 -Wall -fPIC -I../base
# g++ -c PDSS_HKFT.cpp -O3 -Wall -fPIC -I../base
# g++ -c HMWSoln.cpp -O3 -Wall -fPIC -I../base
# g++ -c HMWSoln_input.cpp -O3 -Wall -fPIC -I../base
# g++ -c DebyeHuckel.cpp -O3 -Wall -fPIC -I../base
# g++ -c WaterSSTP.cpp -O3 -Wall -fPIC -I../base
# g++ -c MetalSHEelectrons.cpp -O3 -Wall -fPIC -I../base
# g++ -c VPSSMgr_Water_ConstVol.cpp -O3 -Wall -fPIC -I../base
# g++ -c VPSSMgr_Water_HKFT.cpp -O3 -Wall -fPIC -I../base
# g++ -c IdealSolidSolnPhase.cpp -O3 -Wall -fPIC -I../base
# g++ -c StoichSubstanceSSTP.cpp -O3 -Wall -fPIC -I../base
# g++ -c SingleSpeciesTP.cpp -O3 -Wall -fPIC -I../base
# g++ -c MineralEQ3.cpp -O3 -Wall -fPIC -I../base
# g++ -c GibbsExcessVPSSTP.cpp -O3 -Wall -fPIC -I../base
# g++ -c PseudoBinaryVPSSTP.cpp -O3 -Wall -fPIC -I../base
# g++ -c MargulesVPSSTP.cpp -O3 -Wall -fPIC -I../base
# g++ -c IonsFromNeutralVPSSTP.cpp -O3 -Wall -fPIC -I../base
# g++ -c PDSS_IonsFromNeutral.cpp -O3 -Wall -fPIC -I../base
PDSS_Water.cpp PDSS_HKFT.cpp \
DebyeHuckel.cpp PDSS.cpp \
WaterProps.cpp WaterPropsIAPWS.cpp WaterPropsIAPWSphi.cpp \
VPSSMgr_Water_HKFT.cpp VPSSMgr_Water_ConstVol.cpp \
PDSS_IonsFromNeutral.cpp
GibbsExcessVPSSTP.cpp LatticePhase.cpp IdealMolalSoln.cpp \
HMWSoln.cpp HMWSoln_input.cpp WaterSSTP.cpp \
MetalSHEelectrons.cpp VPSSMgr_Water_ConstVol.cpp \
VPSSMgr_Water_HKFT.cpp IdealSolidSolnPhase.cpp \
StoichSubstanceSSTP.cpp SingleSpeciesTP.cpp MineralEQ3.cpp \
PseudoBinaryVPSSTP.cpp MargulesVPSSTP.cpp
AM_CPPFLAGS = -I../base -I../../../
AM_CXXFLAGS = $(AM_CPPFLAGS)

View file

@ -2,7 +2,8 @@ include $(top_srcdir)/doxygen/aminclude.am
# Build in these directories:
SUBDIRS = Cantera ext test_problems
SUBDIRS += doxygen #examples
SUBDIRS += doxygen
#examples
# Distribute these directories:
DIST_SUBDIRS = Cantera examples

View file

@ -58,10 +58,12 @@ DX_INIT_DOXYGEN(cantera, doxygen/cantera.dox, docs)
# examples/Makefile \
# examples/cxx/Makefile \
AC_OUTPUT(Makefile \
test_problems/Makefile \
test_problems/cathermo/Makefile \
test_problems/cathermo/DH_graph_1/Makefile \
test_problems/cathermo/DH_graph_acommon/Makefile \
doxygen/Makefile \
ext/Makefile \
ext/tpx/Makefile \

View file

@ -0,0 +1,20 @@
cc_sources = DH_graph_1.cpp
INC = -I. -I$(top_builddir)/build/include/ -I$(top_builddir)/build/include/cantera -I$(top_builddir)/build/include/cantera/kernel
AM_CPPFLAGS = $(INC)
AM_CXXFLAGS = $(AM_CPPFLAGS)
LINK = -lctcxx -luser -loneD -lzeroD -lequil -lkinetics -ltransport -lthermo
LINK += -lctnumerics -lctmath -ltpx -lctspectra -lconverters -lctbase -lcvode
LINK += -lctlapack -lctblas -lctf2c -lm -lstdc++
AM_LDFLAGS = -L/workspace/src/cantera/pecos_autotools/build/lib/
LIBS = $(LINK)
bin_PROGRAMS = DH_graph_1
library_includedir = $(INC)
#-----------------------
# Cantera DH graph test
#-----------------------
DH_graph_1_SOURCES = $(cc_sources)

View file

@ -1,113 +1,562 @@
#!/bin/sh
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############################################################################
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# Cantera.
#
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# the name of the executable program to be created
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@SET_MAKE@
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subdir = test_problems/cathermo/DH_graph_acommon
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cc_sources = DH_graph_1.cpp
INC = -I. -I$(top_builddir)/build/include/ -I$(top_builddir)/build/include/cantera -I$(top_builddir)/build/include/cantera/kernel
AM_CPPFLAGS = $(INC)
AM_CXXFLAGS = $(AM_CPPFLAGS)
LINK = -lctcxx -luser -loneD -lzeroD -lequil -lkinetics -ltransport \
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-lctbase -lcvode -lctlapack -lctblas -lctf2c -lm -lstdc++
AM_LDFLAGS = -L/workspace/src/cantera/pecos_autotools/build/lib/
library_includedir = $(INC)
# C++ compile flags
CXX_FLAGS = @CXXFLAGS@ @CXX_INCLUDES@
#-----------------------
# Cantera DH graph test
#-----------------------
DH_graph_1_SOURCES = $(cc_sources)
all: all-am
# Ending C++ linking libraries
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sed 'N;N;N;s,\n, ,g' | \
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# required Cantera libraries
CANTERA_LIBS = @LOCAL_LIBS@ -lctcxx
uninstall-binPROGRAMS:
@$(NORMAL_UNINSTALL)
@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
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INCLUDES=-I$(CANTERA_INCDIR) -I$(CANTERA_INCDIR)/kernel
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@rm -f DH_graph_1$(EXEEXT)
$(CXXLINK) $(DH_graph_1_OBJECTS) $(DH_graph_1_LDADD) $(LIBS)
# flags passed to the C++ compiler/linker for the linking step
LCXX_FLAGS = -L$(CANTERA_LIBDIR) @LOCAL_LIB_DIRS@ @CXXFLAGS@
mostlyclean-compile:
-rm -f *.$(OBJEXT)
# How to compile C++ source files to object files
.@CXX_EXT@.@OBJ_EXT@:
$(CXX) -c $< $(INCLUDES) $(CXX_FLAGS)
distclean-compile:
-rm -f *.tab.c
# How to compile the dependency file
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@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/DH_graph_1.Po@am__quote@
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$(PROGRAM): $(OBJS) $(CANTERA_LIBS_DEP)
$(CXX) -o $(PROGRAM) $(OBJS) $(LCXX_FLAGS) $(LINK_OPTIONS) \
$(CANTERA_LIBS) @LIBS@ $(FORT_LIBS) \
$(LCXX_END_LIBS)
mostlyclean-libtool:
-rm -f *.lo
# Add an additional target for stability:
$(OBJS): $(CANTERA_LIBDIR)/libctbase.a $(CANTERA_LIBDIR)/libthermo.a
clean-libtool:
-rm -rf .libs _libs
# depends target -> forces recalculation of dependencies
depends:
@MAKE@ .depends
ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | \
$(AWK) '{ files[$$0] = 1; nonempty = 1; } \
END { if (nonempty) { for (i in files) print i; }; }'`; \
mkid -fID $$unique
tags: TAGS
.depends: $(DEPENDS)
cat $(DEPENDS) > .depends
TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
$(TAGS_FILES) $(LISP)
set x; \
here=`pwd`; \
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | \
$(AWK) '{ files[$$0] = 1; nonempty = 1; } \
END { if (nonempty) { for (i in files) print i; }; }'`; \
shift; \
if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
test -n "$$unique" || unique=$$empty_fix; \
if test $$# -gt 0; then \
$(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
"$$@" $$unique; \
else \
$(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
$$unique; \
fi; \
fi
ctags: CTAGS
CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
$(TAGS_FILES) $(LISP)
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
unique=`for i in $$list; do \
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
done | \
$(AWK) '{ files[$$0] = 1; nonempty = 1; } \
END { if (nonempty) { for (i in files) print i; }; }'`; \
test -z "$(CTAGS_ARGS)$$unique" \
|| $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
$$unique
# Do the test -> For the windows vc++ environment, we have to skip checking on
# whether the program is uptodate, because we don't utilize make
# in that environment to build programs.
test:
ifeq ($(os_is_win), 1)
else
@ @MAKE@ -s $(PROGRAM)
endif
@ ./runtest
GTAGS:
here=`$(am__cd) $(top_builddir) && pwd` \
&& $(am__cd) $(top_srcdir) \
&& gtags -i $(GTAGS_ARGS) "$$here"
clean:
$(RM) $(OBJS) $(PROGRAM) $(DEPENDS) .depends
../../../bin/rm_cvsignore
(if test -d SunWS_cache ; then \
$(RM) -rf SunWS_cache ; \
fi )
distclean-tags:
-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
ifeq ($(wildcard .depends), .depends)
include .depends
endif
distdir: $(DISTFILES)
@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
list='$(DISTFILES)'; \
dist_files=`for file in $$list; do echo $$file; done | \
sed -e "s|^$$srcdirstrip/||;t" \
-e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
case $$dist_files in \
*/*) $(MKDIR_P) `echo "$$dist_files" | \
sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
sort -u` ;; \
esac; \
for file in $$dist_files; do \
if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
if test -d $$d/$$file; then \
dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
if test -d "$(distdir)/$$file"; then \
find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
fi; \
if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
fi; \
cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
else \
test -f "$(distdir)/$$file" \
|| cp -p $$d/$$file "$(distdir)/$$file" \
|| exit 1; \
fi; \
done
check-am: all-am
check: check-am
all-am: Makefile $(PROGRAMS)
installdirs:
for dir in "$(DESTDIR)$(bindir)"; do \
test -z "$$dir" || $(MKDIR_P) "$$dir"; \
done
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am
install-am: all-am
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
installcheck: installcheck-am
install-strip:
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
`test -z '$(STRIP)' || \
echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
mostlyclean-generic:
clean-generic:
distclean-generic:
-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
maintainer-clean-generic:
@echo "This command is intended for maintainers to use"
@echo "it deletes files that may require special tools to rebuild."
clean: clean-am
clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
distclean: distclean-am
-rm -rf ./$(DEPDIR)
-rm -f Makefile
distclean-am: clean-am distclean-compile distclean-generic \
distclean-tags
dvi: dvi-am
dvi-am:
html: html-am
html-am:
info: info-am
info-am:
install-data-am:
install-dvi: install-dvi-am
install-dvi-am:
install-exec-am: install-binPROGRAMS
install-html: install-html-am
install-html-am:
install-info: install-info-am
install-info-am:
install-man:
install-pdf: install-pdf-am
install-pdf-am:
install-ps: install-ps-am
install-ps-am:
installcheck-am:
maintainer-clean: maintainer-clean-am
-rm -rf ./$(DEPDIR)
-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-generic
mostlyclean: mostlyclean-am
mostlyclean-am: mostlyclean-compile mostlyclean-generic \
mostlyclean-libtool
pdf: pdf-am
pdf-am:
ps: ps-am
ps-am:
uninstall-am: uninstall-binPROGRAMS
.MAKE: install-am install-strip
.PHONY: CTAGS GTAGS all all-am check check-am clean clean-binPROGRAMS \
clean-generic clean-libtool ctags distclean distclean-compile \
distclean-generic distclean-libtool distclean-tags distdir dvi \
dvi-am html html-am info info-am install install-am \
install-binPROGRAMS install-data install-data-am install-dvi \
install-dvi-am install-exec install-exec-am install-html \
install-html-am install-info install-info-am install-man \
install-pdf install-pdf-am install-ps install-ps-am \
install-strip installcheck installcheck-am installdirs \
maintainer-clean maintainer-clean-generic mostlyclean \
mostlyclean-compile mostlyclean-generic mostlyclean-libtool \
pdf pdf-am ps ps-am tags uninstall uninstall-am \
uninstall-binPROGRAMS
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:

View file

@ -1 +1 @@
SUBDIRS = DH_graph_1
SUBDIRS = DH_graph_1 DH_graph_acommon