diff --git a/doxygen/Makefile.am b/doxygen/Makefile.am
deleted file mode 100644
index 52023fbe5..000000000
--- a/doxygen/Makefile.am
+++ /dev/null
@@ -1,7 +0,0 @@
-#txt_common fig_common
-EXTRA_DIST = cantera.dox cantera.page
-#EXTRA_DIST += install.page tutorial.page
-
-dist-hook:
- rm -rf `find $(distdir)/ -name .svn`
- rm -rf `find $(distdir)/ -name .deps`
diff --git a/doxygen/aminclude.am b/doxygen/aminclude.am
deleted file mode 100644
index c035d2422..000000000
--- a/doxygen/aminclude.am
+++ /dev/null
@@ -1,171 +0,0 @@
-#-----------------------------------
-# PECOS - add any additional doxygen
-# dependencies here.
-#-----------------------------------
-
-PECOS_extra_dependencies = doxygen/cantera.page \
- doxygen/txt_common/about.page \
- doxygen/txt_common/gpl.page \
- doxygen/txt_common/acknowledgment.page
-
-## --------------------------------- ##
-## Format-independent Doxygen rules. ##
-## --------------------------------- ##
-
-if DX_COND_doc
-
-## ------------------------------- ##
-## Rules specific for HTML output. ##
-## ------------------------------- ##
-
-if DX_COND_html
-
-DX_CLEAN_HTML = @DX_DOCDIR@/html
-
-endif DX_COND_html
-
-## ------------------------------ ##
-## Rules specific for CHM output. ##
-## ------------------------------ ##
-
-if DX_COND_chm
-
-DX_CLEAN_CHM = @DX_DOCDIR@/chm
-
-if DX_COND_chi
-
-DX_CLEAN_CHI = @DX_DOCDIR@/@PACKAGE@.chi
-
-endif DX_COND_chi
-
-endif DX_COND_chm
-
-## ------------------------------ ##
-## Rules specific for MAN output. ##
-## ------------------------------ ##
-
-if DX_COND_man
-
-DX_CLEAN_MAN = @DX_DOCDIR@/man
-
-endif DX_COND_man
-
-## ------------------------------ ##
-## Rules specific for RTF output. ##
-## ------------------------------ ##
-
-if DX_COND_rtf
-
-DX_CLEAN_RTF = @DX_DOCDIR@/rtf
-
-endif DX_COND_rtf
-
-## ------------------------------ ##
-## Rules specific for XML output. ##
-## ------------------------------ ##
-
-if DX_COND_xml
-
-DX_CLEAN_XML = @DX_DOCDIR@/xml
-
-endif DX_COND_xml
-
-## ----------------------------- ##
-## Rules specific for PS output. ##
-## ----------------------------- ##
-
-if DX_COND_ps
-
-DX_CLEAN_PS = @DX_DOCDIR@/@PACKAGE@.ps
-
-DX_PS_GOAL = doxygen-ps
-
-doxygen-ps: @DX_DOCDIR@/@PACKAGE@.ps
-
-@DX_DOCDIR@/@PACKAGE@.ps: @DX_DOCDIR@/@PACKAGE@.tag
- cd @DX_DOCDIR@/latex; \
- rm -f *.aux *.toc *.idx *.ind *.ilg *.log *.out; \
- $(DX_LATEX) refman.tex; \
- $(MAKEINDEX_PATH) refman.idx; \
- $(DX_LATEX) refman.tex; \
- countdown=5; \
- while $(DX_EGREP) 'Rerun (LaTeX|to get cross-references right)' \
- refman.log > /dev/null 2>&1 \
- && test $$countdown -gt 0; do \
- $(DX_LATEX) refman.tex; \
- countdown=`expr $$countdown - 1`; \
- done; \
- $(DX_DVIPS) -o ../@PACKAGE@.ps refman.dvi
-
-endif DX_COND_ps
-
-## ------------------------------ ##
-## Rules specific for PDF output. ##
-## ------------------------------ ##
-
-if DX_COND_pdf
-
-DX_CLEAN_PDF = @DX_DOCDIR@/@PACKAGE@.pdf
-
-DX_PDF_GOAL = doxygen-pdf
-
-doxygen-pdf: @DX_DOCDIR@/@PACKAGE@.pdf
-
-@DX_DOCDIR@/@PACKAGE@.pdf: @DX_DOCDIR@/@PACKAGE@.tag
- cd @DX_DOCDIR@/latex; \
- rm -f *.aux *.toc *.idx *.ind *.ilg *.log *.out; \
- $(DX_PDFLATEX) refman.tex; \
- $(DX_MAKEINDEX) refman.idx; \
- $(DX_PDFLATEX) refman.tex; \
- countdown=5; \
- while $(DX_EGREP) 'Rerun (LaTeX|to get cross-references right)' \
- refman.log > /dev/null 2>&1 \
- && test $$countdown -gt 0; do \
- $(DX_PDFLATEX) refman.tex; \
- countdown=`expr $$countdown - 1`; \
- done; \
- mv refman.pdf ../@PACKAGE@.pdf
-
-endif DX_COND_pdf
-
-## ------------------------------------------------- ##
-## Rules specific for LaTeX (shared for PS and PDF). ##
-## ------------------------------------------------- ##
-
-if DX_COND_latex
-
-DX_CLEAN_LATEX = @DX_DOCDIR@/latex
-
-endif DX_COND_latex
-
-.PHONY: doxygen-run doxygen-doc $(DX_PS_GOAL) $(DX_PDF_GOAL)
-
-.INTERMEDIATE: doxygen-run $(DX_PS_GOAL) $(DX_PDF_GOAL)
-
-doxygen-run: @DX_DOCDIR@/@PACKAGE@.tag
-
-doxygen-doc: doxygen-run $(DX_PS_GOAL) $(DX_PDF_GOAL)
-
-doc: doxygen-doc
-docs: doxygen-doc
-
-@DX_DOCDIR@/@PACKAGE@.tag: $(DX_CONFIG) $(pkginclude_HEADERS) $(PECOS_extra_dependencies)
- rm -rf @DX_DOCDIR@
- $(DX_ENV) $(DX_DOXYGEN) $(srcdir)/$(DX_CONFIG)
-
-DX_CLEANFILES = \
- @DX_DOCDIR@/@PACKAGE@.tag \
- -r \
- $(DX_CLEAN_HTML) \
- $(DX_CLEAN_CHM) \
- $(DX_CLEAN_CHI) \
- $(DX_CLEAN_MAN) \
- $(DX_CLEAN_RTF) \
- $(DX_CLEAN_XML) \
- $(DX_CLEAN_PS) \
- $(DX_CLEAN_PDF) \
- $(DX_CLEAN_LATEX)
-
-# Additional PECOS dependencies
-
-endif DX_COND_doc
diff --git a/doxygen/cantera.page b/doxygen/cantera.page
deleted file mode 100644
index 3497c6f50..000000000
--- a/doxygen/cantera.page
+++ /dev/null
@@ -1,16 +0,0 @@
-/*! \mainpage The CANTERA Library
-
-Version \version, Build Date: \builddate
-
-Built by: \builduser on \buildhost
-
-
-\section overview Overview
-
-Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes.
-
-With Cantera's object technology, you assemble your architectural masterpiece (i.e application program) from a set of very special bricks you pick up at the Cantera quarry! Each "brick" (or object) represents some well-defined small component of the global structure.
-
-Cantera 2.0 is now in beta. It includes a new build system based on scons, a python build environment, with an alternative autotool system. Cantera includes several new thermodynamics and transport classes, including a large database of aqueous thermodynamics. It may be downloaded as the trunk version of cantera. Documentation for Cantera 2.0 is available at the following link.
-
-*/