From 6acfea61ffca92a11673b8febb57483eb7ebf3c5 Mon Sep 17 00:00:00 2001
From: Dave Goodwin <dgg@caltech.edu>
Date: Fri, 15 Aug 2003 02:54:09 +0000
Subject: [PATCH] *** empty log message ***

---
 Cantera/python/Cantera/ctml_writer.py |  29 +-
 Cantera/src/converters/Makefile.in    |   2 +-
 Cantera/src/converters/ck2ct.cpp      |  25 +-
 Cantera/src/importCTML.cpp            | 137 +++--
 data/inputs/air.xml                   |  41 +-
 data/inputs/argon.xml                 |  11 +-
 data/inputs/gri30.xml                 | 777 +++++++++++++-------------
 data/inputs/h2o2.xml                  |  93 +--
 data/inputs/silane.xml                |  65 ++-
 tools/src/Makefile.in                 |   8 +-
 10 files changed, 618 insertions(+), 570 deletions(-)

diff --git a/Cantera/python/Cantera/ctml_writer.py b/Cantera/python/Cantera/ctml_writer.py
index a0c90d83a..c5c3242e1 100644
--- a/Cantera/python/Cantera/ctml_writer.py
+++ b/Cantera/python/Cantera/ctml_writer.py
@@ -453,15 +453,15 @@ class reaction(writer):
                  equation = '',
                  kf = None,
                  id = '',
-                 special = []
+                 options = []
                  ):
 
         self._id = id
         self._e = equation
-        if type(special) == types.StringType:
-            self._special = [special]
+        if type(options) == types.StringType:
+            self._options = [options]
         else:
-            self._special = special
+            self._options = options
         global _reactions
         self._num = len(_reactions)+1
         r = ''
@@ -524,9 +524,10 @@ class reaction(writer):
             r['reversible'] = 'yes'
         else:
             r['reversible'] = 'no'
-        nspecial = len(self._special)
-        for nss in range(nspecial):
-            s = self._special[nss]
+                
+        noptions = len(self._options)
+        for nss in range(noptions):
+            s = self._options[nss]
             if s == 'duplicate':
                 r['duplicate'] = 'yes'
             elif s == 'negative_A':
@@ -603,10 +604,10 @@ class three_body_reaction(reaction):
                  kf = None,
                  efficiencies = '',
                  id = '',
-                 special = []
+                 options = []
                  ):
 
-        reaction.__init__(self, equation, kf, id, special)
+        reaction.__init__(self, equation, kf, id, options)
         self._type = 'threeBody'
         self._effm = 1.0
         self._eff = efficiencies
@@ -641,11 +642,11 @@ class falloff_reaction(reaction):
                  efficiencies = '',
                  falloff = None,
                  id = '',
-                 special = []
+                 options = []
                  ):
 
         kf2 = (kf, kf0)        
-        reaction.__init__(self, equation, kf2, id)
+        reaction.__init__(self, equation, kf2, id, options)
         self._type = 'falloff'
         # use a Lindemann falloff function by default
         self._falloff = falloff
@@ -696,11 +697,11 @@ class surface_reaction(reaction):
                  kf = None,
                  stick = None,
                  id = '',
-                 special = []):
+                 options = []):
         if stick:
-            reaction.__init__(self, equation, stick, id)
+            reaction.__init__(self, equation, stick, id, options)
         else:
-            reaction.__init__(self, equation, kf, id)
+            reaction.__init__(self, equation, kf, id, options)
         self._type = 'surface'
 
 #--------------            
diff --git a/Cantera/src/converters/Makefile.in b/Cantera/src/converters/Makefile.in
index d05afae98..a21524b8f 100644
--- a/Cantera/src/converters/Makefile.in
+++ b/Cantera/src/converters/Makefile.in
@@ -16,7 +16,7 @@ OBJDIR = .
 CXX_FLAGS = @CXXFLAGS@ $(CXX_OPT) 
 
 # Temporarily removed 'filter.o', since it was causing a compile error on Mac OS X.
-OBJS = ck2ctml.o atomicWeightDB.o CKParser.o CKReader.o Reaction.o ckr_utils.o \
+OBJS = atomicWeightDB.o CKParser.o CKReader.o Reaction.o ckr_utils.o \
         thermoFunctions.o writelog.o ck2ct.o 
 
 CXX_INCLUDES = -I. -I..
diff --git a/Cantera/src/converters/ck2ct.cpp b/Cantera/src/converters/ck2ct.cpp
index c7a4b17f6..fb7ef4690 100644
--- a/Cantera/src/converters/ck2ct.cpp
+++ b/Cantera/src/converters/ck2ct.cpp
@@ -1,7 +1,7 @@
 /**
- * @file ck2ctml.cpp
+ * @file ck2ct.cpp
  *
- * Convert CK-format reaction mechanism files to CTML format.
+ * Convert CK-format reaction mechanism files to Cantera input format.
  *
  */
 #ifdef WIN32
@@ -11,6 +11,9 @@
 
 #include <iostream>
 #include <string>
+
+#define USE_STRINGSTREAM
+
 #ifdef USE_STRINGSTREAM
 #include <sstream>
 #endif
@@ -28,8 +31,6 @@ using namespace Cantera;
 namespace pip {
 
     struct trdata {
-        //trdata() {name = "-";}
-        //        string name;
         int geom;
         doublereal welldepth, diam, dipole, polar, rot;
     };
@@ -155,19 +156,6 @@ namespace pip {
     }
 
 
-//     static void addShomate(XML_Node& node, 
-//         const vector_fp& low, const vector_fp& high,  
-//         doublereal minx, doublereal midx, 
-//         doublereal maxx) {
-//         XML_Node& f = node.addChild("Shomate");
-//         if (minx != -999.0) f.addAttribute("Tmin",minx);
-//         if (maxx != -999.0) f.addAttribute("Tmid",midx);
-//         if (maxx != -999.0) f.addAttribute("Tmax",maxx);
-//         addFloatArray(f,"low",low.size(),low.begin());
-//         addFloatArray(f,"high",high.size(),high.begin());
-//     }
-
-
     static void addFalloff(string type, 
         const vector_fp& params) {
         if (type == "Troe") {
@@ -298,6 +286,9 @@ namespace pip {
                 cout << ",\n         efficiencies = \"" << estr << "\"";
             }
         }
+        if (rxn.isDuplicate) {
+            cout << ",\n         options = \'duplicate\'";
+        }
     cout << ")" << endl;
     }
 
diff --git a/Cantera/src/importCTML.cpp b/Cantera/src/importCTML.cpp
index 097945d88..44bca5cce 100755
--- a/Cantera/src/importCTML.cpp
+++ b/Cantera/src/importCTML.cpp
@@ -52,7 +52,7 @@ GasKineticsWriter* writer = 0;
 
 vector< map<int, doublereal> > _reactiondata;
 vector<string> _eqn;
-vector_int _dup;
+vector_int _dup, _nr, _typ;
 vector<bool> _rev;
 
 
@@ -773,19 +773,35 @@ namespace Cantera {
      * stoichiometric coefficients have the same ratio for all
      * species.
      */
-    static bool isDuplicateReaction(map<int, doublereal>& r1, map<int, doublereal>& r2) {
+    static doublereal isDuplicateReaction(map<int, doublereal>& r1, map<int, doublereal>& r2) {
         
         map<int, doublereal>::const_iterator b = r1.begin(), e = r1.end();
         int k1 = b->first;
-        doublereal ratio = r2[k1]/r1[k1];
-        if (r1[k1] == 0.0 || r2[k1] == 0.0) return false;
+        doublereal ratio = 0.0;
+        if (r1[k1] == 0.0 || r2[k1] == 0.0) goto next;
+        ratio = r2[k1]/r1[k1];
         ++b;
         for (; b != e; ++b) {
             k1 = b->first;
-            if (r1[k1] == 0.0 || r2[k1] == 0.0) return false;
-            if (fabs(r2[k1]/r1[k1] - ratio) > 1.e-8) return false;
+            if (r1[k1] == 0.0 || r2[k1] == 0.0) goto next;
+            if (fabs(r2[k1]/r1[k1] - ratio) > 1.e-8) 
+                goto next;
         }
-        return true;
+        return ratio;
+next:
+        ratio = 0.0;
+        b = r1.begin();
+        k1 = b->first;
+        if (r1[k1] == 0.0 || r2[-k1] == 0.0) return 0.0;
+        ratio = r2[-k1]/r1[k1];
+        ++b;
+        for (; b != e; ++b) {
+            k1 = b->first;
+            if (r1[k1] == 0.0 || r2[-k1] == 0.0) return 0.0;
+            if (fabs(r2[-k1]/r1[k1] - ratio) > 1.e-8) 
+                return 0.0;
+        }
+        return ratio;
     }
 
 
@@ -855,56 +871,11 @@ namespace Cantera {
             return false;
         }
 
+        rdata.reversible = false;
         string isrev = r["reversible"];
         if (isrev == "yes" || isrev == "true")
             rdata.reversible = true;
 
-        if (check_for_duplicates) {
-            doublereal c = 0.0;
-            map<int, doublereal> rxnstoich;
-            rxnstoich.clear();
-            int nr = rdata.reactants.size();
-            for (nn = 0; nn < nr; nn++) {
-                rxnstoich[rdata.reactants[nn]] -= rdata.rstoich[nn];
-            }
-            int np = rdata.products.size();
-            for (nn = 0; nn < np; nn++) {
-                rxnstoich[rdata.products[nn]] += rdata.pstoich[nn];
-            }
-            int nrxns = _reactiondata.size();
-            for (nn = 0; nn < nrxns; nn++) {
-                c = isDuplicateReaction(rxnstoich, _reactiondata[nn]);
-                if (c > 0.0 
-                    || (c < 0.0 && rdata.reversible)
-                    || (c < 0.0 && _rev[nn])) {
-
-                    if ((!dup || !_dup[nn])) {
-                        string msg = string("Undeclared duplicate reactions detected: \n")
-                                     +"Reaction "+int2str(nn+1)+": "+_eqn[nn]
-                                     +"\nReaction "+int2str(i+1)+": "+eqn+"\n";
-                        _reactiondata.clear();
-                        _eqn.clear();
-                        _rev.clear();
-                        _dup.clear();
-                        throw CanteraError("installReaction",msg);
-                    }
-                }
-            }
-            _dup.push_back(dup);
-            _rev.push_back(rdata.reversible);
-            _eqn.push_back(eqn);
-            _reactiondata.push_back(rxnstoich);
-        }
-        
-        rdata.equation = eqn;
-        rdata.reversible = false;
-        rdata.number = i;
-        rdata.rxn_number = i;
-	/*
-	 * Seaarch the reaction element for the attribute "type".
-	 * If found, then branch on the type, to fill in appropriate
-	 * fields in rdata. 
-	 */
         string typ = r["type"];
         if (typ == "falloff") {
             rdata.reactionType = FALLOFF_RXN;
@@ -923,6 +894,62 @@ namespace Cantera {
         else if (typ != "")
             throw CanteraError("installReaction",
                 "Unknown reaction type: " + typ);
+
+
+        if (check_for_duplicates) {
+            doublereal c = 0.0;
+            
+            map<int, doublereal> rxnstoich;
+            rxnstoich.clear();
+            int nr = rdata.reactants.size();
+            for (nn = 0; nn < nr; nn++) {
+                rxnstoich[-1 - rdata.reactants[nn]] -= rdata.rstoich[nn];
+            }
+            int np = rdata.products.size();
+            for (nn = 0; nn < np; nn++) {
+                rxnstoich[rdata.products[nn]+1] += rdata.pstoich[nn];
+            }
+            int nrxns = _reactiondata.size();
+            for (nn = 0; nn < nrxns; nn++) {
+                if ((int(rdata.reactants.size()) == _nr[nn]) 
+                    && (rdata.reactionType == _typ[nn])) {
+                    c = isDuplicateReaction(rxnstoich, _reactiondata[nn]);
+                    if (c > 0.0 
+                        || (c < 0.0 && rdata.reversible)
+                        || (c < 0.0 && _rev[nn])) {
+                        if ((!dup || !_dup[nn])) {
+                            string msg = string("Undeclared duplicate reactions detected: \n")
+                                         +"Reaction "+int2str(nn+1)+": "+_eqn[nn]
+                                         +"\nReaction "+int2str(i+1)+": "+eqn+"\n";
+                            _reactiondata.clear();
+                            _eqn.clear();
+                            _rev.clear();
+                            _nr.clear();
+                            _typ.clear();
+                            _dup.clear();
+                            throw CanteraError("installReaction",msg);
+                        }
+                        //else 
+                        //     break;
+                    }
+                }
+            }
+            _dup.push_back(dup);
+            _rev.push_back(rdata.reversible);
+            _eqn.push_back(eqn);
+            _nr.push_back(rdata.reactants.size());
+            _typ.push_back(rdata.reactionType);
+            _reactiondata.push_back(rxnstoich);
+        }
+        
+        rdata.equation = eqn;
+        rdata.number = i;
+        rdata.rxn_number = i;
+	/*
+	 * Seaarch the reaction element for the attribute "type".
+	 * If found, then branch on the type, to fill in appropriate
+	 * fields in rdata. 
+	 */
             
         getRateCoefficient(r.child("rateCoeff"), kin, rdata, negA);
 	/*
@@ -953,6 +980,8 @@ namespace Cantera {
 
         _eqn.clear();
         _dup.clear();
+        _nr.clear();
+        _typ.clear();
         _reactiondata.clear();
         _rev.clear();
 
@@ -1058,6 +1087,8 @@ namespace Cantera {
         writer = 0;
         _eqn.clear();
         _dup.clear();
+        _nr.clear();
+        _typ.clear();
         _reactiondata.clear();
         return true;
     }
diff --git a/data/inputs/air.xml b/data/inputs/air.xml
index a0ac54f6a..e702ea9f3 100644
--- a/data/inputs/air.xml
+++ b/data/inputs/air.xml
@@ -1,7 +1,12 @@
 <ctml>
+  <validate reactions="yes" species="yes"/>
 
-  <!--     phase air      -->
+  <!--    phase air     -->
   <phase dim="3" id="air">
+    <validation>
+      <duplicateReactions>halt</duplicateReactions>
+      <thermo>warn</thermo>
+    </validation>
     <elementArray datasrc="elements.xml"> O  N  Ar </elementArray>
     <speciesArray datasrc="#species_data"> O  O2  N  NO  NO2  N2O  N2  AR </speciesArray>
     <reactionArray datasrc="#reaction_data"/>
@@ -10,10 +15,10 @@
     <transport model="None"/>
   </phase>
 
-  <!--      species definitions      -->
+  <!--     species definitions     -->
   <speciesData id="species_data">
 
-    <!--     species O     -->
+    <!--    species O    -->
     <species name="O">
       <atomArray>O:1 </atomArray>
       <thermo>
@@ -38,7 +43,7 @@
       </transport>
     </species>
 
-    <!--     species O2     -->
+    <!--    species O2    -->
     <species name="O2">
       <atomArray>O:2 </atomArray>
       <thermo>
@@ -63,7 +68,7 @@
       </transport>
     </species>
 
-    <!--     species N     -->
+    <!--    species N    -->
     <species name="N">
       <atomArray>N:1 </atomArray>
       <thermo>
@@ -88,7 +93,7 @@
       </transport>
     </species>
 
-    <!--     species NO     -->
+    <!--    species NO    -->
     <species name="NO">
       <atomArray>O:1 N:1 </atomArray>
       <thermo>
@@ -113,7 +118,7 @@
       </transport>
     </species>
 
-    <!--     species NO2     -->
+    <!--    species NO2    -->
     <species name="NO2">
       <atomArray>O:2 N:1 </atomArray>
       <thermo>
@@ -138,7 +143,7 @@
       </transport>
     </species>
 
-    <!--     species N2O     -->
+    <!--    species N2O    -->
     <species name="N2O">
       <atomArray>O:1 N:2 </atomArray>
       <thermo>
@@ -163,7 +168,7 @@
       </transport>
     </species>
 
-    <!--     species N2     -->
+    <!--    species N2    -->
     <species name="N2">
       <atomArray>N:2 </atomArray>
       <thermo>
@@ -188,7 +193,7 @@
       </transport>
     </species>
 
-    <!--     species AR     -->
+    <!--    species AR    -->
     <species name="AR">
       <atomArray>Ar:1 </atomArray>
       <thermo>
@@ -215,7 +220,7 @@
   </speciesData>
   <reactionData id="reaction_data">
 
-    <!--    reaction 0001     -->
+    <!--   reaction 0001    -->
     <reaction id="0001" reversible="yes" type="threeBody">
       <equation>2 O + M [=] O2 + M</equation>
       <rateCoeff>
@@ -230,7 +235,7 @@
       <products>O2:1</products>
     </reaction>
 
-    <!--    reaction 0002     -->
+    <!--   reaction 0002    -->
     <reaction id="0002" reversible="yes">
       <equation>N + NO [=] N2 + O</equation>
       <rateCoeff>
@@ -244,7 +249,7 @@
       <products>N2:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0003     -->
+    <!--   reaction 0003    -->
     <reaction id="0003" reversible="yes">
       <equation>N + O2 [=] NO + O</equation>
       <rateCoeff>
@@ -258,7 +263,7 @@
       <products>O:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0004     -->
+    <!--   reaction 0004    -->
     <reaction id="0004" reversible="yes">
       <equation>N2O + O [=] N2 + O2</equation>
       <rateCoeff>
@@ -272,7 +277,7 @@
       <products>N2:1 O2:1</products>
     </reaction>
 
-    <!--    reaction 0005     -->
+    <!--   reaction 0005    -->
     <reaction id="0005" reversible="yes">
       <equation>N2O + O [=] 2 NO</equation>
       <rateCoeff>
@@ -286,7 +291,7 @@
       <products>NO:2</products>
     </reaction>
 
-    <!--    reaction 0006     -->
+    <!--   reaction 0006    -->
     <reaction id="0006" reversible="yes" type="falloff">
       <equation>N2O (+ M) [=] N2 + O (+ M)</equation>
       <rateCoeff>
@@ -307,7 +312,7 @@
       <products>N2:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0007     -->
+    <!--   reaction 0007    -->
     <reaction id="0007" reversible="yes" type="threeBody">
       <equation>NO + O + M [=] NO2 + M</equation>
       <rateCoeff>
@@ -322,7 +327,7 @@
       <products>NO2:1</products>
     </reaction>
 
-    <!--    reaction 0008     -->
+    <!--   reaction 0008    -->
     <reaction id="0008" reversible="yes">
       <equation>NO2 + O [=] NO + O2</equation>
       <rateCoeff>
diff --git a/data/inputs/argon.xml b/data/inputs/argon.xml
index ec8d0361e..76ed1fa73 100644
--- a/data/inputs/argon.xml
+++ b/data/inputs/argon.xml
@@ -1,7 +1,12 @@
 <ctml>
+  <validate reactions="yes" species="yes"/>
 
-  <!--     phase argon      -->
+  <!--    phase argon     -->
   <phase dim="3" id="argon">
+    <validation>
+      <duplicateReactions>halt</duplicateReactions>
+      <thermo>warn</thermo>
+    </validation>
     <elementArray datasrc="elements.xml"> Ar </elementArray>
     <speciesArray datasrc="#species_data"> AR </speciesArray>
     <reactionArray datasrc="#reaction_data"/>
@@ -10,10 +15,10 @@
     <transport model="None"/>
   </phase>
 
-  <!--      species definitions      -->
+  <!--     species definitions     -->
   <speciesData id="species_data">
 
-    <!--     species AR     -->
+    <!--    species AR    -->
     <species name="AR">
       <atomArray>Ar:1 </atomArray>
       <thermo>
diff --git a/data/inputs/gri30.xml b/data/inputs/gri30.xml
index 14638b74d..273ba0d9c 100755
--- a/data/inputs/gri30.xml
+++ b/data/inputs/gri30.xml
@@ -1,7 +1,12 @@
 <ctml>
+  <validate reactions="yes" species="yes"/>
 
-  <!--     phase gri30      -->
+  <!--    phase gri30     -->
   <phase dim="3" id="gri30">
+    <validation>
+      <duplicateReactions>halt</duplicateReactions>
+      <thermo>warn</thermo>
+    </validation>
     <elementArray datasrc="elements.xml"> O  H  C  N  Ar </elementArray>
     <speciesArray datasrc="#species_data">
      H2  H  O  O2  OH  H2O  HO2  H2O2  C  CH 
@@ -16,10 +21,10 @@
     <transport model="None"/>
   </phase>
 
-  <!--      species definitions      -->
+  <!--     species definitions     -->
   <speciesData id="species_data">
 
-    <!--     species H2     -->
+    <!--    species H2    -->
     <species name="H2">
       <atomArray>H:2 </atomArray>
       <thermo>
@@ -44,7 +49,7 @@
       </transport>
     </species>
 
-    <!--     species H     -->
+    <!--    species H    -->
     <species name="H">
       <atomArray>H:1 </atomArray>
       <thermo>
@@ -69,7 +74,7 @@
       </transport>
     </species>
 
-    <!--     species O     -->
+    <!--    species O    -->
     <species name="O">
       <atomArray>O:1 </atomArray>
       <thermo>
@@ -94,7 +99,7 @@
       </transport>
     </species>
 
-    <!--     species O2     -->
+    <!--    species O2    -->
     <species name="O2">
       <atomArray>O:2 </atomArray>
       <thermo>
@@ -119,7 +124,7 @@
       </transport>
     </species>
 
-    <!--     species OH     -->
+    <!--    species OH    -->
     <species name="OH">
       <atomArray>H:1 O:1 </atomArray>
       <thermo>
@@ -144,7 +149,7 @@
       </transport>
     </species>
 
-    <!--     species H2O     -->
+    <!--    species H2O    -->
     <species name="H2O">
       <atomArray>H:2 O:1 </atomArray>
       <thermo>
@@ -169,7 +174,7 @@
       </transport>
     </species>
 
-    <!--     species HO2     -->
+    <!--    species HO2    -->
     <species name="HO2">
       <atomArray>H:1 O:2 </atomArray>
       <thermo>
@@ -194,7 +199,7 @@
       </transport>
     </species>
 
-    <!--     species H2O2     -->
+    <!--    species H2O2    -->
     <species name="H2O2">
       <atomArray>H:2 O:2 </atomArray>
       <thermo>
@@ -219,7 +224,7 @@
       </transport>
     </species>
 
-    <!--     species C     -->
+    <!--    species C    -->
     <species name="C">
       <atomArray>C:1 </atomArray>
       <thermo>
@@ -244,7 +249,7 @@
       </transport>
     </species>
 
-    <!--     species CH     -->
+    <!--    species CH    -->
     <species name="CH">
       <atomArray>H:1 C:1 </atomArray>
       <thermo>
@@ -269,7 +274,7 @@
       </transport>
     </species>
 
-    <!--     species CH2     -->
+    <!--    species CH2    -->
     <species name="CH2">
       <atomArray>H:2 C:1 </atomArray>
       <thermo>
@@ -294,7 +299,7 @@
       </transport>
     </species>
 
-    <!--     species CH2(S)     -->
+    <!--    species CH2(S)    -->
     <species name="CH2(S)">
       <atomArray>H:2 C:1 </atomArray>
       <thermo>
@@ -319,7 +324,7 @@
       </transport>
     </species>
 
-    <!--     species CH3     -->
+    <!--    species CH3    -->
     <species name="CH3">
       <atomArray>H:3 C:1 </atomArray>
       <thermo>
@@ -344,7 +349,7 @@
       </transport>
     </species>
 
-    <!--     species CH4     -->
+    <!--    species CH4    -->
     <species name="CH4">
       <atomArray>H:4 C:1 </atomArray>
       <thermo>
@@ -369,7 +374,7 @@
       </transport>
     </species>
 
-    <!--     species CO     -->
+    <!--    species CO    -->
     <species name="CO">
       <atomArray>C:1 O:1 </atomArray>
       <thermo>
@@ -394,7 +399,7 @@
       </transport>
     </species>
 
-    <!--     species CO2     -->
+    <!--    species CO2    -->
     <species name="CO2">
       <atomArray>C:1 O:2 </atomArray>
       <thermo>
@@ -419,7 +424,7 @@
       </transport>
     </species>
 
-    <!--     species HCO     -->
+    <!--    species HCO    -->
     <species name="HCO">
       <atomArray>H:1 C:1 O:1 </atomArray>
       <thermo>
@@ -444,7 +449,7 @@
       </transport>
     </species>
 
-    <!--     species CH2O     -->
+    <!--    species CH2O    -->
     <species name="CH2O">
       <atomArray>H:2 C:1 O:1 </atomArray>
       <thermo>
@@ -469,7 +474,7 @@
       </transport>
     </species>
 
-    <!--     species CH2OH     -->
+    <!--    species CH2OH    -->
     <species name="CH2OH">
       <atomArray>H:3 C:1 O:1 </atomArray>
       <thermo>
@@ -494,7 +499,7 @@
       </transport>
     </species>
 
-    <!--     species CH3O     -->
+    <!--    species CH3O    -->
     <species name="CH3O">
       <atomArray>H:3 C:1 O:1 </atomArray>
       <thermo>
@@ -519,7 +524,7 @@
       </transport>
     </species>
 
-    <!--     species CH3OH     -->
+    <!--    species CH3OH    -->
     <species name="CH3OH">
       <atomArray>H:4 C:1 O:1 </atomArray>
       <thermo>
@@ -544,7 +549,7 @@
       </transport>
     </species>
 
-    <!--     species C2H     -->
+    <!--    species C2H    -->
     <species name="C2H">
       <atomArray>H:1 C:2 </atomArray>
       <thermo>
@@ -569,7 +574,7 @@
       </transport>
     </species>
 
-    <!--     species C2H2     -->
+    <!--    species C2H2    -->
     <species name="C2H2">
       <atomArray>H:2 C:2 </atomArray>
       <thermo>
@@ -594,7 +599,7 @@
       </transport>
     </species>
 
-    <!--     species C2H3     -->
+    <!--    species C2H3    -->
     <species name="C2H3">
       <atomArray>H:3 C:2 </atomArray>
       <thermo>
@@ -619,7 +624,7 @@
       </transport>
     </species>
 
-    <!--     species C2H4     -->
+    <!--    species C2H4    -->
     <species name="C2H4">
       <atomArray>H:4 C:2 </atomArray>
       <thermo>
@@ -644,7 +649,7 @@
       </transport>
     </species>
 
-    <!--     species C2H5     -->
+    <!--    species C2H5    -->
     <species name="C2H5">
       <atomArray>H:5 C:2 </atomArray>
       <thermo>
@@ -669,7 +674,7 @@
       </transport>
     </species>
 
-    <!--     species C2H6     -->
+    <!--    species C2H6    -->
     <species name="C2H6">
       <atomArray>H:6 C:2 </atomArray>
       <thermo>
@@ -694,7 +699,7 @@
       </transport>
     </species>
 
-    <!--     species HCCO     -->
+    <!--    species HCCO    -->
     <species name="HCCO">
       <atomArray>H:1 C:2 O:1 </atomArray>
       <thermo>
@@ -719,7 +724,7 @@
       </transport>
     </species>
 
-    <!--     species CH2CO     -->
+    <!--    species CH2CO    -->
     <species name="CH2CO">
       <atomArray>H:2 C:2 O:1 </atomArray>
       <thermo>
@@ -744,7 +749,7 @@
       </transport>
     </species>
 
-    <!--     species HCCOH     -->
+    <!--    species HCCOH    -->
     <species name="HCCOH">
       <atomArray>H:2 C:2 O:1 </atomArray>
       <thermo>
@@ -769,7 +774,7 @@
       </transport>
     </species>
 
-    <!--     species N     -->
+    <!--    species N    -->
     <species name="N">
       <atomArray>N:1 </atomArray>
       <thermo>
@@ -794,7 +799,7 @@
       </transport>
     </species>
 
-    <!--     species NH     -->
+    <!--    species NH    -->
     <species name="NH">
       <atomArray>H:1 N:1 </atomArray>
       <thermo>
@@ -819,7 +824,7 @@
       </transport>
     </species>
 
-    <!--     species NH2     -->
+    <!--    species NH2    -->
     <species name="NH2">
       <atomArray>H:2 N:1 </atomArray>
       <thermo>
@@ -844,7 +849,7 @@
       </transport>
     </species>
 
-    <!--     species NH3     -->
+    <!--    species NH3    -->
     <species name="NH3">
       <atomArray>H:3 N:1 </atomArray>
       <thermo>
@@ -869,7 +874,7 @@
       </transport>
     </species>
 
-    <!--     species NNH     -->
+    <!--    species NNH    -->
     <species name="NNH">
       <atomArray>H:1 N:2 </atomArray>
       <thermo>
@@ -894,7 +899,7 @@
       </transport>
     </species>
 
-    <!--     species NO     -->
+    <!--    species NO    -->
     <species name="NO">
       <atomArray>O:1 N:1 </atomArray>
       <thermo>
@@ -919,7 +924,7 @@
       </transport>
     </species>
 
-    <!--     species NO2     -->
+    <!--    species NO2    -->
     <species name="NO2">
       <atomArray>O:2 N:1 </atomArray>
       <thermo>
@@ -944,7 +949,7 @@
       </transport>
     </species>
 
-    <!--     species N2O     -->
+    <!--    species N2O    -->
     <species name="N2O">
       <atomArray>O:1 N:2 </atomArray>
       <thermo>
@@ -969,7 +974,7 @@
       </transport>
     </species>
 
-    <!--     species HNO     -->
+    <!--    species HNO    -->
     <species name="HNO">
       <atomArray>H:1 O:1 N:1 </atomArray>
       <thermo>
@@ -994,7 +999,7 @@
       </transport>
     </species>
 
-    <!--     species CN     -->
+    <!--    species CN    -->
     <species name="CN">
       <atomArray>C:1 N:1 </atomArray>
       <thermo>
@@ -1019,7 +1024,7 @@
       </transport>
     </species>
 
-    <!--     species HCN     -->
+    <!--    species HCN    -->
     <species name="HCN">
       <atomArray>H:1 C:1 N:1 </atomArray>
       <thermo>
@@ -1044,7 +1049,7 @@
       </transport>
     </species>
 
-    <!--     species H2CN     -->
+    <!--    species H2CN    -->
     <species name="H2CN">
       <atomArray>H:2 C:1 N:1 </atomArray>
       <thermo>
@@ -1069,7 +1074,7 @@
       </transport>
     </species>
 
-    <!--     species HCNN     -->
+    <!--    species HCNN    -->
     <species name="HCNN">
       <atomArray>H:1 C:1 N:2 </atomArray>
       <thermo>
@@ -1094,7 +1099,7 @@
       </transport>
     </species>
 
-    <!--     species HCNO     -->
+    <!--    species HCNO    -->
     <species name="HCNO">
       <atomArray>H:1 C:1 O:1 N:1 </atomArray>
       <thermo>
@@ -1119,7 +1124,7 @@
       </transport>
     </species>
 
-    <!--     species HOCN     -->
+    <!--    species HOCN    -->
     <species name="HOCN">
       <atomArray>H:1 C:1 O:1 N:1 </atomArray>
       <thermo>
@@ -1144,7 +1149,7 @@
       </transport>
     </species>
 
-    <!--     species HNCO     -->
+    <!--    species HNCO    -->
     <species name="HNCO">
       <atomArray>H:1 C:1 O:1 N:1 </atomArray>
       <thermo>
@@ -1169,7 +1174,7 @@
       </transport>
     </species>
 
-    <!--     species NCO     -->
+    <!--    species NCO    -->
     <species name="NCO">
       <atomArray>C:1 O:1 N:1 </atomArray>
       <thermo>
@@ -1194,7 +1199,7 @@
       </transport>
     </species>
 
-    <!--     species N2     -->
+    <!--    species N2    -->
     <species name="N2">
       <atomArray>N:2 </atomArray>
       <thermo>
@@ -1219,7 +1224,7 @@
       </transport>
     </species>
 
-    <!--     species AR     -->
+    <!--    species AR    -->
     <species name="AR">
       <atomArray>Ar:1 </atomArray>
       <thermo>
@@ -1244,7 +1249,7 @@
       </transport>
     </species>
 
-    <!--     species C3H7     -->
+    <!--    species C3H7    -->
     <species name="C3H7">
       <atomArray>H:7 C:3 </atomArray>
       <thermo>
@@ -1269,7 +1274,7 @@
       </transport>
     </species>
 
-    <!--     species C3H8     -->
+    <!--    species C3H8    -->
     <species name="C3H8">
       <atomArray>H:8 C:3 </atomArray>
       <thermo>
@@ -1294,7 +1299,7 @@
       </transport>
     </species>
 
-    <!--     species CH2CHO     -->
+    <!--    species CH2CHO    -->
     <species name="CH2CHO">
       <atomArray>H:3 C:2 O:1 </atomArray>
       <thermo>
@@ -1319,7 +1324,7 @@
       </transport>
     </species>
 
-    <!--     species CH3CHO     -->
+    <!--    species CH3CHO    -->
     <species name="CH3CHO">
       <atomArray>H:4 C:2 O:1 </atomArray>
       <thermo>
@@ -1346,7 +1351,7 @@
   </speciesData>
   <reactionData id="reaction_data">
 
-    <!--    reaction 0001     -->
+    <!--   reaction 0001    -->
     <reaction id="0001" reversible="yes" type="threeBody">
       <equation>2 O + M [=] O2 + M</equation>
       <rateCoeff>
@@ -1361,7 +1366,7 @@
       <products>O2:1</products>
     </reaction>
 
-    <!--    reaction 0002     -->
+    <!--   reaction 0002    -->
     <reaction id="0002" reversible="yes" type="threeBody">
       <equation>O + H + M [=] OH + M</equation>
       <rateCoeff>
@@ -1376,7 +1381,7 @@
       <products>OH:1</products>
     </reaction>
 
-    <!--    reaction 0003     -->
+    <!--   reaction 0003    -->
     <reaction id="0003" reversible="yes">
       <equation>O + H2 [=] H + OH</equation>
       <rateCoeff>
@@ -1390,7 +1395,7 @@
       <products>H:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0004     -->
+    <!--   reaction 0004    -->
     <reaction id="0004" reversible="yes">
       <equation>O + HO2 [=] OH + O2</equation>
       <rateCoeff>
@@ -1404,7 +1409,7 @@
       <products>O2:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0005     -->
+    <!--   reaction 0005    -->
     <reaction id="0005" reversible="yes">
       <equation>O + H2O2 [=] OH + HO2</equation>
       <rateCoeff>
@@ -1418,7 +1423,7 @@
       <products>HO2:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0006     -->
+    <!--   reaction 0006    -->
     <reaction id="0006" reversible="yes">
       <equation>O + CH [=] H + CO</equation>
       <rateCoeff>
@@ -1432,7 +1437,7 @@
       <products>H:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0007     -->
+    <!--   reaction 0007    -->
     <reaction id="0007" reversible="yes">
       <equation>O + CH2 [=] H + HCO</equation>
       <rateCoeff>
@@ -1446,7 +1451,7 @@
       <products>H:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0008     -->
+    <!--   reaction 0008    -->
     <reaction id="0008" reversible="yes">
       <equation>O + CH2(S) [=] H2 + CO</equation>
       <rateCoeff>
@@ -1460,7 +1465,7 @@
       <products>H2:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0009     -->
+    <!--   reaction 0009    -->
     <reaction id="0009" reversible="yes">
       <equation>O + CH2(S) [=] H + HCO</equation>
       <rateCoeff>
@@ -1474,7 +1479,7 @@
       <products>H:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0010     -->
+    <!--   reaction 0010    -->
     <reaction id="0010" reversible="yes">
       <equation>O + CH3 [=] H + CH2O</equation>
       <rateCoeff>
@@ -1488,7 +1493,7 @@
       <products>CH2O:1 H:1</products>
     </reaction>
 
-    <!--    reaction 0011     -->
+    <!--   reaction 0011    -->
     <reaction id="0011" reversible="yes">
       <equation>O + CH4 [=] OH + CH3</equation>
       <rateCoeff>
@@ -1502,7 +1507,7 @@
       <products>CH3:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0012     -->
+    <!--   reaction 0012    -->
     <reaction id="0012" reversible="yes" type="falloff">
       <equation>O + CO (+ M) [=] CO2 (+ M)</equation>
       <rateCoeff>
@@ -1523,7 +1528,7 @@
       <products>CO2:1</products>
     </reaction>
 
-    <!--    reaction 0013     -->
+    <!--   reaction 0013    -->
     <reaction id="0013" reversible="yes">
       <equation>O + HCO [=] OH + CO</equation>
       <rateCoeff>
@@ -1537,7 +1542,7 @@
       <products>CO:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0014     -->
+    <!--   reaction 0014    -->
     <reaction id="0014" reversible="yes">
       <equation>O + HCO [=] H + CO2</equation>
       <rateCoeff>
@@ -1551,7 +1556,7 @@
       <products>H:1 CO2:1</products>
     </reaction>
 
-    <!--    reaction 0015     -->
+    <!--   reaction 0015    -->
     <reaction id="0015" reversible="yes">
       <equation>O + CH2O [=] OH + HCO</equation>
       <rateCoeff>
@@ -1565,7 +1570,7 @@
       <products>HCO:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0016     -->
+    <!--   reaction 0016    -->
     <reaction id="0016" reversible="yes">
       <equation>O + CH2OH [=] OH + CH2O</equation>
       <rateCoeff>
@@ -1579,7 +1584,7 @@
       <products>CH2O:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0017     -->
+    <!--   reaction 0017    -->
     <reaction id="0017" reversible="yes">
       <equation>O + CH3O [=] OH + CH2O</equation>
       <rateCoeff>
@@ -1593,7 +1598,7 @@
       <products>CH2O:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0018     -->
+    <!--   reaction 0018    -->
     <reaction id="0018" reversible="yes">
       <equation>O + CH3OH [=] OH + CH2OH</equation>
       <rateCoeff>
@@ -1607,7 +1612,7 @@
       <products>CH2OH:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0019     -->
+    <!--   reaction 0019    -->
     <reaction id="0019" reversible="yes">
       <equation>O + CH3OH [=] OH + CH3O</equation>
       <rateCoeff>
@@ -1621,7 +1626,7 @@
       <products>CH3O:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0020     -->
+    <!--   reaction 0020    -->
     <reaction id="0020" reversible="yes">
       <equation>O + C2H [=] CH + CO</equation>
       <rateCoeff>
@@ -1635,7 +1640,7 @@
       <products>CH:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0021     -->
+    <!--   reaction 0021    -->
     <reaction id="0021" reversible="yes">
       <equation>O + C2H2 [=] H + HCCO</equation>
       <rateCoeff>
@@ -1649,7 +1654,7 @@
       <products>H:1 HCCO:1</products>
     </reaction>
 
-    <!--    reaction 0022     -->
+    <!--   reaction 0022    -->
     <reaction id="0022" reversible="yes">
       <equation>O + C2H2 [=] OH + C2H</equation>
       <rateCoeff>
@@ -1663,7 +1668,7 @@
       <products>C2H:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0023     -->
+    <!--   reaction 0023    -->
     <reaction id="0023" reversible="yes">
       <equation>O + C2H2 [=] CO + CH2</equation>
       <rateCoeff>
@@ -1677,7 +1682,7 @@
       <products>CH2:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0024     -->
+    <!--   reaction 0024    -->
     <reaction id="0024" reversible="yes">
       <equation>O + C2H3 [=] H + CH2CO</equation>
       <rateCoeff>
@@ -1691,7 +1696,7 @@
       <products>H:1 CH2CO:1</products>
     </reaction>
 
-    <!--    reaction 0025     -->
+    <!--   reaction 0025    -->
     <reaction id="0025" reversible="yes">
       <equation>O + C2H4 [=] CH3 + HCO</equation>
       <rateCoeff>
@@ -1705,7 +1710,7 @@
       <products>CH3:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0026     -->
+    <!--   reaction 0026    -->
     <reaction id="0026" reversible="yes">
       <equation>O + C2H5 [=] CH3 + CH2O</equation>
       <rateCoeff>
@@ -1719,7 +1724,7 @@
       <products>CH2O:1 CH3:1</products>
     </reaction>
 
-    <!--    reaction 0027     -->
+    <!--   reaction 0027    -->
     <reaction id="0027" reversible="yes">
       <equation>O + C2H6 [=] OH + C2H5</equation>
       <rateCoeff>
@@ -1733,7 +1738,7 @@
       <products>C2H5:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0028     -->
+    <!--   reaction 0028    -->
     <reaction id="0028" reversible="yes">
       <equation>O + HCCO [=] H + 2 CO</equation>
       <rateCoeff>
@@ -1747,7 +1752,7 @@
       <products>H:1 CO:2</products>
     </reaction>
 
-    <!--    reaction 0029     -->
+    <!--   reaction 0029    -->
     <reaction id="0029" reversible="yes">
       <equation>O + CH2CO [=] OH + HCCO</equation>
       <rateCoeff>
@@ -1761,7 +1766,7 @@
       <products>HCCO:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0030     -->
+    <!--   reaction 0030    -->
     <reaction id="0030" reversible="yes">
       <equation>O + CH2CO [=] CH2 + CO2</equation>
       <rateCoeff>
@@ -1775,7 +1780,7 @@
       <products>CH2:1 CO2:1</products>
     </reaction>
 
-    <!--    reaction 0031     -->
+    <!--   reaction 0031    -->
     <reaction id="0031" reversible="yes">
       <equation>O2 + CO [=] O + CO2</equation>
       <rateCoeff>
@@ -1789,7 +1794,7 @@
       <products>CO2:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0032     -->
+    <!--   reaction 0032    -->
     <reaction id="0032" reversible="yes">
       <equation>O2 + CH2O [=] HO2 + HCO</equation>
       <rateCoeff>
@@ -1803,7 +1808,7 @@
       <products>HO2:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0033     -->
+    <!--   reaction 0033    -->
     <reaction id="0033" reversible="yes" type="threeBody">
       <equation>H + O2 + M [=] HO2 + M</equation>
       <rateCoeff>
@@ -1818,7 +1823,7 @@
       <products>HO2:1</products>
     </reaction>
 
-    <!--    reaction 0034     -->
+    <!--   reaction 0034    -->
     <reaction id="0034" reversible="yes">
       <equation>H + 2 O2 [=] HO2 + O2</equation>
       <rateCoeff>
@@ -1832,7 +1837,7 @@
       <products>HO2:1 O2:1</products>
     </reaction>
 
-    <!--    reaction 0035     -->
+    <!--   reaction 0035    -->
     <reaction id="0035" reversible="yes">
       <equation>H + O2 + H2O [=] HO2 + H2O</equation>
       <rateCoeff>
@@ -1846,7 +1851,7 @@
       <products>H2O:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0036     -->
+    <!--   reaction 0036    -->
     <reaction id="0036" reversible="yes">
       <equation>H + O2 + N2 [=] HO2 + N2</equation>
       <rateCoeff>
@@ -1860,7 +1865,7 @@
       <products>N2:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0037     -->
+    <!--   reaction 0037    -->
     <reaction id="0037" reversible="yes">
       <equation>H + O2 + AR [=] HO2 + AR</equation>
       <rateCoeff>
@@ -1874,7 +1879,7 @@
       <products>AR:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0038     -->
+    <!--   reaction 0038    -->
     <reaction id="0038" reversible="yes">
       <equation>H + O2 [=] O + OH</equation>
       <rateCoeff>
@@ -1888,7 +1893,7 @@
       <products>O:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0039     -->
+    <!--   reaction 0039    -->
     <reaction id="0039" reversible="yes" type="threeBody">
       <equation>2 H + M [=] H2 + M</equation>
       <rateCoeff>
@@ -1903,7 +1908,7 @@
       <products>H2:1</products>
     </reaction>
 
-    <!--    reaction 0040     -->
+    <!--   reaction 0040    -->
     <reaction id="0040" reversible="yes">
       <equation>2 H + H2 [=] 2 H2</equation>
       <rateCoeff>
@@ -1917,7 +1922,7 @@
       <products>H2:2</products>
     </reaction>
 
-    <!--    reaction 0041     -->
+    <!--   reaction 0041    -->
     <reaction id="0041" reversible="yes">
       <equation>2 H + H2O [=] H2 + H2O</equation>
       <rateCoeff>
@@ -1931,7 +1936,7 @@
       <products>H2:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0042     -->
+    <!--   reaction 0042    -->
     <reaction id="0042" reversible="yes">
       <equation>2 H + CO2 [=] H2 + CO2</equation>
       <rateCoeff>
@@ -1945,7 +1950,7 @@
       <products>H2:1 CO2:1</products>
     </reaction>
 
-    <!--    reaction 0043     -->
+    <!--   reaction 0043    -->
     <reaction id="0043" reversible="yes" type="threeBody">
       <equation>H + OH + M [=] H2O + M</equation>
       <rateCoeff>
@@ -1960,7 +1965,7 @@
       <products>H2O:1</products>
     </reaction>
 
-    <!--    reaction 0044     -->
+    <!--   reaction 0044    -->
     <reaction id="0044" reversible="yes">
       <equation>H + HO2 [=] O + H2O</equation>
       <rateCoeff>
@@ -1974,7 +1979,7 @@
       <products>H2O:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0045     -->
+    <!--   reaction 0045    -->
     <reaction id="0045" reversible="yes">
       <equation>H + HO2 [=] O2 + H2</equation>
       <rateCoeff>
@@ -1988,7 +1993,7 @@
       <products>H2:1 O2:1</products>
     </reaction>
 
-    <!--    reaction 0046     -->
+    <!--   reaction 0046    -->
     <reaction id="0046" reversible="yes">
       <equation>H + HO2 [=] 2 OH</equation>
       <rateCoeff>
@@ -2002,7 +2007,7 @@
       <products>OH:2</products>
     </reaction>
 
-    <!--    reaction 0047     -->
+    <!--   reaction 0047    -->
     <reaction id="0047" reversible="yes">
       <equation>H + H2O2 [=] HO2 + H2</equation>
       <rateCoeff>
@@ -2016,7 +2021,7 @@
       <products>H2:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0048     -->
+    <!--   reaction 0048    -->
     <reaction id="0048" reversible="yes">
       <equation>H + H2O2 [=] OH + H2O</equation>
       <rateCoeff>
@@ -2030,7 +2035,7 @@
       <products>H2O:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0049     -->
+    <!--   reaction 0049    -->
     <reaction id="0049" reversible="yes">
       <equation>H + CH [=] C + H2</equation>
       <rateCoeff>
@@ -2044,7 +2049,7 @@
       <products>H2:1 C:1</products>
     </reaction>
 
-    <!--    reaction 0050     -->
+    <!--   reaction 0050    -->
     <reaction id="0050" reversible="yes" type="falloff">
       <equation>H + CH2 (+ M) [=] CH3 (+ M)</equation>
       <rateCoeff>
@@ -2065,7 +2070,7 @@
       <products>CH3:1</products>
     </reaction>
 
-    <!--    reaction 0051     -->
+    <!--   reaction 0051    -->
     <reaction id="0051" reversible="yes">
       <equation>H + CH2(S) [=] CH + H2</equation>
       <rateCoeff>
@@ -2079,7 +2084,7 @@
       <products>H2:1 CH:1</products>
     </reaction>
 
-    <!--    reaction 0052     -->
+    <!--   reaction 0052    -->
     <reaction id="0052" reversible="yes" type="falloff">
       <equation>H + CH3 (+ M) [=] CH4 (+ M)</equation>
       <rateCoeff>
@@ -2100,7 +2105,7 @@
       <products>CH4:1</products>
     </reaction>
 
-    <!--    reaction 0053     -->
+    <!--   reaction 0053    -->
     <reaction id="0053" reversible="yes">
       <equation>H + CH4 [=] CH3 + H2</equation>
       <rateCoeff>
@@ -2114,7 +2119,7 @@
       <products>H2:1 CH3:1</products>
     </reaction>
 
-    <!--    reaction 0054     -->
+    <!--   reaction 0054    -->
     <reaction id="0054" reversible="yes" type="falloff">
       <equation>H + HCO (+ M) [=] CH2O (+ M)</equation>
       <rateCoeff>
@@ -2135,7 +2140,7 @@
       <products>CH2O:1</products>
     </reaction>
 
-    <!--    reaction 0055     -->
+    <!--   reaction 0055    -->
     <reaction id="0055" reversible="yes">
       <equation>H + HCO [=] H2 + CO</equation>
       <rateCoeff>
@@ -2149,7 +2154,7 @@
       <products>H2:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0056     -->
+    <!--   reaction 0056    -->
     <reaction id="0056" reversible="yes" type="falloff">
       <equation>H + CH2O (+ M) [=] CH2OH (+ M)</equation>
       <rateCoeff>
@@ -2170,7 +2175,7 @@
       <products>CH2OH:1</products>
     </reaction>
 
-    <!--    reaction 0057     -->
+    <!--   reaction 0057    -->
     <reaction id="0057" reversible="yes" type="falloff">
       <equation>H + CH2O (+ M) [=] CH3O (+ M)</equation>
       <rateCoeff>
@@ -2191,7 +2196,7 @@
       <products>CH3O:1</products>
     </reaction>
 
-    <!--    reaction 0058     -->
+    <!--   reaction 0058    -->
     <reaction id="0058" reversible="yes">
       <equation>H + CH2O [=] HCO + H2</equation>
       <rateCoeff>
@@ -2205,7 +2210,7 @@
       <products>H2:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0059     -->
+    <!--   reaction 0059    -->
     <reaction id="0059" reversible="yes" type="falloff">
       <equation>H + CH2OH (+ M) [=] CH3OH (+ M)</equation>
       <rateCoeff>
@@ -2226,7 +2231,7 @@
       <products>CH3OH:1</products>
     </reaction>
 
-    <!--    reaction 0060     -->
+    <!--   reaction 0060    -->
     <reaction id="0060" reversible="yes">
       <equation>H + CH2OH [=] H2 + CH2O</equation>
       <rateCoeff>
@@ -2240,7 +2245,7 @@
       <products>H2:1 CH2O:1</products>
     </reaction>
 
-    <!--    reaction 0061     -->
+    <!--   reaction 0061    -->
     <reaction id="0061" reversible="yes">
       <equation>H + CH2OH [=] OH + CH3</equation>
       <rateCoeff>
@@ -2254,7 +2259,7 @@
       <products>CH3:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0062     -->
+    <!--   reaction 0062    -->
     <reaction id="0062" reversible="yes">
       <equation>H + CH2OH [=] CH2(S) + H2O</equation>
       <rateCoeff>
@@ -2268,7 +2273,7 @@
       <products>CH2(S):1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0063     -->
+    <!--   reaction 0063    -->
     <reaction id="0063" reversible="yes" type="falloff">
       <equation>H + CH3O (+ M) [=] CH3OH (+ M)</equation>
       <rateCoeff>
@@ -2289,7 +2294,7 @@
       <products>CH3OH:1</products>
     </reaction>
 
-    <!--    reaction 0064     -->
+    <!--   reaction 0064    -->
     <reaction id="0064" reversible="yes">
       <equation>H + CH3O [=] H + CH2OH</equation>
       <rateCoeff>
@@ -2303,7 +2308,7 @@
       <products>H:1 CH2OH:1</products>
     </reaction>
 
-    <!--    reaction 0065     -->
+    <!--   reaction 0065    -->
     <reaction id="0065" reversible="yes">
       <equation>H + CH3O [=] H2 + CH2O</equation>
       <rateCoeff>
@@ -2317,7 +2322,7 @@
       <products>H2:1 CH2O:1</products>
     </reaction>
 
-    <!--    reaction 0066     -->
+    <!--   reaction 0066    -->
     <reaction id="0066" reversible="yes">
       <equation>H + CH3O [=] OH + CH3</equation>
       <rateCoeff>
@@ -2331,7 +2336,7 @@
       <products>CH3:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0067     -->
+    <!--   reaction 0067    -->
     <reaction id="0067" reversible="yes">
       <equation>H + CH3O [=] CH2(S) + H2O</equation>
       <rateCoeff>
@@ -2345,7 +2350,7 @@
       <products>CH2(S):1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0068     -->
+    <!--   reaction 0068    -->
     <reaction id="0068" reversible="yes">
       <equation>H + CH3OH [=] CH2OH + H2</equation>
       <rateCoeff>
@@ -2359,7 +2364,7 @@
       <products>H2:1 CH2OH:1</products>
     </reaction>
 
-    <!--    reaction 0069     -->
+    <!--   reaction 0069    -->
     <reaction id="0069" reversible="yes">
       <equation>H + CH3OH [=] CH3O + H2</equation>
       <rateCoeff>
@@ -2373,7 +2378,7 @@
       <products>H2:1 CH3O:1</products>
     </reaction>
 
-    <!--    reaction 0070     -->
+    <!--   reaction 0070    -->
     <reaction id="0070" reversible="yes" type="falloff">
       <equation>H + C2H (+ M) [=] C2H2 (+ M)</equation>
       <rateCoeff>
@@ -2394,7 +2399,7 @@
       <products>C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0071     -->
+    <!--   reaction 0071    -->
     <reaction id="0071" reversible="yes" type="falloff">
       <equation>H + C2H2 (+ M) [=] C2H3 (+ M)</equation>
       <rateCoeff>
@@ -2415,7 +2420,7 @@
       <products>C2H3:1</products>
     </reaction>
 
-    <!--    reaction 0072     -->
+    <!--   reaction 0072    -->
     <reaction id="0072" reversible="yes" type="falloff">
       <equation>H + C2H3 (+ M) [=] C2H4 (+ M)</equation>
       <rateCoeff>
@@ -2436,7 +2441,7 @@
       <products>C2H4:1</products>
     </reaction>
 
-    <!--    reaction 0073     -->
+    <!--   reaction 0073    -->
     <reaction id="0073" reversible="yes">
       <equation>H + C2H3 [=] H2 + C2H2</equation>
       <rateCoeff>
@@ -2450,7 +2455,7 @@
       <products>H2:1 C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0074     -->
+    <!--   reaction 0074    -->
     <reaction id="0074" reversible="yes" type="falloff">
       <equation>H + C2H4 (+ M) [=] C2H5 (+ M)</equation>
       <rateCoeff>
@@ -2471,7 +2476,7 @@
       <products>C2H5:1</products>
     </reaction>
 
-    <!--    reaction 0075     -->
+    <!--   reaction 0075    -->
     <reaction id="0075" reversible="yes">
       <equation>H + C2H4 [=] C2H3 + H2</equation>
       <rateCoeff>
@@ -2485,7 +2490,7 @@
       <products>H2:1 C2H3:1</products>
     </reaction>
 
-    <!--    reaction 0076     -->
+    <!--   reaction 0076    -->
     <reaction id="0076" reversible="yes" type="falloff">
       <equation>H + C2H5 (+ M) [=] C2H6 (+ M)</equation>
       <rateCoeff>
@@ -2506,7 +2511,7 @@
       <products>C2H6:1</products>
     </reaction>
 
-    <!--    reaction 0077     -->
+    <!--   reaction 0077    -->
     <reaction id="0077" reversible="yes">
       <equation>H + C2H5 [=] H2 + C2H4</equation>
       <rateCoeff>
@@ -2520,7 +2525,7 @@
       <products>H2:1 C2H4:1</products>
     </reaction>
 
-    <!--    reaction 0078     -->
+    <!--   reaction 0078    -->
     <reaction id="0078" reversible="yes">
       <equation>H + C2H6 [=] C2H5 + H2</equation>
       <rateCoeff>
@@ -2534,7 +2539,7 @@
       <products>H2:1 C2H5:1</products>
     </reaction>
 
-    <!--    reaction 0079     -->
+    <!--   reaction 0079    -->
     <reaction id="0079" reversible="yes">
       <equation>H + HCCO [=] CH2(S) + CO</equation>
       <rateCoeff>
@@ -2548,7 +2553,7 @@
       <products>CH2(S):1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0080     -->
+    <!--   reaction 0080    -->
     <reaction id="0080" reversible="yes">
       <equation>H + CH2CO [=] HCCO + H2</equation>
       <rateCoeff>
@@ -2562,7 +2567,7 @@
       <products>H2:1 HCCO:1</products>
     </reaction>
 
-    <!--    reaction 0081     -->
+    <!--   reaction 0081    -->
     <reaction id="0081" reversible="yes">
       <equation>H + CH2CO [=] CH3 + CO</equation>
       <rateCoeff>
@@ -2576,7 +2581,7 @@
       <products>CH3:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0082     -->
+    <!--   reaction 0082    -->
     <reaction id="0082" reversible="yes">
       <equation>H + HCCOH [=] H + CH2CO</equation>
       <rateCoeff>
@@ -2590,7 +2595,7 @@
       <products>H:1 CH2CO:1</products>
     </reaction>
 
-    <!--    reaction 0083     -->
+    <!--   reaction 0083    -->
     <reaction id="0083" reversible="yes" type="falloff">
       <equation>H2 + CO (+ M) [=] CH2O (+ M)</equation>
       <rateCoeff>
@@ -2611,7 +2616,7 @@
       <products>CH2O:1</products>
     </reaction>
 
-    <!--    reaction 0084     -->
+    <!--   reaction 0084    -->
     <reaction id="0084" reversible="yes">
       <equation>OH + H2 [=] H + H2O</equation>
       <rateCoeff>
@@ -2625,7 +2630,7 @@
       <products>H:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0085     -->
+    <!--   reaction 0085    -->
     <reaction id="0085" reversible="yes" type="falloff">
       <equation>2 OH (+ M) [=] H2O2 (+ M)</equation>
       <rateCoeff>
@@ -2646,7 +2651,7 @@
       <products>H2O2:1</products>
     </reaction>
 
-    <!--    reaction 0086     -->
+    <!--   reaction 0086    -->
     <reaction id="0086" reversible="yes">
       <equation>2 OH [=] O + H2O</equation>
       <rateCoeff>
@@ -2660,8 +2665,8 @@
       <products>H2O:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0087     -->
-    <reaction id="0087" reversible="yes">
+    <!--   reaction 0087    -->
+    <reaction duplicate="yes" id="0087" reversible="yes">
       <equation>OH + HO2 [=] O2 + H2O</equation>
       <rateCoeff>
         <Arrhenius>
@@ -2674,8 +2679,8 @@
       <products>H2O:1 O2:1</products>
     </reaction>
 
-    <!--    reaction 0088     -->
-    <reaction id="0088" reversible="yes">
+    <!--   reaction 0088    -->
+    <reaction duplicate="yes" id="0088" reversible="yes">
       <equation>OH + H2O2 [=] HO2 + H2O</equation>
       <rateCoeff>
         <Arrhenius>
@@ -2688,8 +2693,8 @@
       <products>H2O:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0089     -->
-    <reaction id="0089" reversible="yes">
+    <!--   reaction 0089    -->
+    <reaction duplicate="yes" id="0089" reversible="yes">
       <equation>OH + H2O2 [=] HO2 + H2O</equation>
       <rateCoeff>
         <Arrhenius>
@@ -2702,7 +2707,7 @@
       <products>H2O:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0090     -->
+    <!--   reaction 0090    -->
     <reaction id="0090" reversible="yes">
       <equation>OH + C [=] H + CO</equation>
       <rateCoeff>
@@ -2716,7 +2721,7 @@
       <products>H:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0091     -->
+    <!--   reaction 0091    -->
     <reaction id="0091" reversible="yes">
       <equation>OH + CH [=] H + HCO</equation>
       <rateCoeff>
@@ -2730,7 +2735,7 @@
       <products>H:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0092     -->
+    <!--   reaction 0092    -->
     <reaction id="0092" reversible="yes">
       <equation>OH + CH2 [=] H + CH2O</equation>
       <rateCoeff>
@@ -2744,7 +2749,7 @@
       <products>CH2O:1 H:1</products>
     </reaction>
 
-    <!--    reaction 0093     -->
+    <!--   reaction 0093    -->
     <reaction id="0093" reversible="yes">
       <equation>OH + CH2 [=] CH + H2O</equation>
       <rateCoeff>
@@ -2758,7 +2763,7 @@
       <products>H2O:1 CH:1</products>
     </reaction>
 
-    <!--    reaction 0094     -->
+    <!--   reaction 0094    -->
     <reaction id="0094" reversible="yes">
       <equation>OH + CH2(S) [=] H + CH2O</equation>
       <rateCoeff>
@@ -2772,7 +2777,7 @@
       <products>CH2O:1 H:1</products>
     </reaction>
 
-    <!--    reaction 0095     -->
+    <!--   reaction 0095    -->
     <reaction id="0095" reversible="yes" type="falloff">
       <equation>OH + CH3 (+ M) [=] CH3OH (+ M)</equation>
       <rateCoeff>
@@ -2793,7 +2798,7 @@
       <products>CH3OH:1</products>
     </reaction>
 
-    <!--    reaction 0096     -->
+    <!--   reaction 0096    -->
     <reaction id="0096" reversible="yes">
       <equation>OH + CH3 [=] CH2 + H2O</equation>
       <rateCoeff>
@@ -2807,7 +2812,7 @@
       <products>CH2:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0097     -->
+    <!--   reaction 0097    -->
     <reaction id="0097" reversible="yes">
       <equation>OH + CH3 [=] CH2(S) + H2O</equation>
       <rateCoeff>
@@ -2821,7 +2826,7 @@
       <products>CH2(S):1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0098     -->
+    <!--   reaction 0098    -->
     <reaction id="0098" reversible="yes">
       <equation>OH + CH4 [=] CH3 + H2O</equation>
       <rateCoeff>
@@ -2835,7 +2840,7 @@
       <products>H2O:1 CH3:1</products>
     </reaction>
 
-    <!--    reaction 0099     -->
+    <!--   reaction 0099    -->
     <reaction id="0099" reversible="yes">
       <equation>OH + CO [=] H + CO2</equation>
       <rateCoeff>
@@ -2849,7 +2854,7 @@
       <products>H:1 CO2:1</products>
     </reaction>
 
-    <!--    reaction 0100     -->
+    <!--   reaction 0100    -->
     <reaction id="0100" reversible="yes">
       <equation>OH + HCO [=] H2O + CO</equation>
       <rateCoeff>
@@ -2863,7 +2868,7 @@
       <products>H2O:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0101     -->
+    <!--   reaction 0101    -->
     <reaction id="0101" reversible="yes">
       <equation>OH + CH2O [=] HCO + H2O</equation>
       <rateCoeff>
@@ -2877,7 +2882,7 @@
       <products>H2O:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0102     -->
+    <!--   reaction 0102    -->
     <reaction id="0102" reversible="yes">
       <equation>OH + CH2OH [=] H2O + CH2O</equation>
       <rateCoeff>
@@ -2891,7 +2896,7 @@
       <products>CH2O:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0103     -->
+    <!--   reaction 0103    -->
     <reaction id="0103" reversible="yes">
       <equation>OH + CH3O [=] H2O + CH2O</equation>
       <rateCoeff>
@@ -2905,7 +2910,7 @@
       <products>CH2O:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0104     -->
+    <!--   reaction 0104    -->
     <reaction id="0104" reversible="yes">
       <equation>OH + CH3OH [=] CH2OH + H2O</equation>
       <rateCoeff>
@@ -2919,7 +2924,7 @@
       <products>CH2OH:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0105     -->
+    <!--   reaction 0105    -->
     <reaction id="0105" reversible="yes">
       <equation>OH + CH3OH [=] CH3O + H2O</equation>
       <rateCoeff>
@@ -2933,7 +2938,7 @@
       <products>H2O:1 CH3O:1</products>
     </reaction>
 
-    <!--    reaction 0106     -->
+    <!--   reaction 0106    -->
     <reaction id="0106" reversible="yes">
       <equation>OH + C2H [=] H + HCCO</equation>
       <rateCoeff>
@@ -2947,7 +2952,7 @@
       <products>H:1 HCCO:1</products>
     </reaction>
 
-    <!--    reaction 0107     -->
+    <!--   reaction 0107    -->
     <reaction id="0107" reversible="yes">
       <equation>OH + C2H2 [=] H + CH2CO</equation>
       <rateCoeff>
@@ -2961,7 +2966,7 @@
       <products>H:1 CH2CO:1</products>
     </reaction>
 
-    <!--    reaction 0108     -->
+    <!--   reaction 0108    -->
     <reaction id="0108" reversible="yes">
       <equation>OH + C2H2 [=] H + HCCOH</equation>
       <rateCoeff>
@@ -2975,7 +2980,7 @@
       <products>H:1 HCCOH:1</products>
     </reaction>
 
-    <!--    reaction 0109     -->
+    <!--   reaction 0109    -->
     <reaction id="0109" reversible="yes">
       <equation>OH + C2H2 [=] C2H + H2O</equation>
       <rateCoeff>
@@ -2989,7 +2994,7 @@
       <products>C2H:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0110     -->
+    <!--   reaction 0110    -->
     <reaction id="0110" reversible="yes">
       <equation>OH + C2H2 [=] CH3 + CO</equation>
       <rateCoeff>
@@ -3003,7 +3008,7 @@
       <products>CH3:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0111     -->
+    <!--   reaction 0111    -->
     <reaction id="0111" reversible="yes">
       <equation>OH + C2H3 [=] H2O + C2H2</equation>
       <rateCoeff>
@@ -3017,7 +3022,7 @@
       <products>H2O:1 C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0112     -->
+    <!--   reaction 0112    -->
     <reaction id="0112" reversible="yes">
       <equation>OH + C2H4 [=] C2H3 + H2O</equation>
       <rateCoeff>
@@ -3031,7 +3036,7 @@
       <products>H2O:1 C2H3:1</products>
     </reaction>
 
-    <!--    reaction 0113     -->
+    <!--   reaction 0113    -->
     <reaction id="0113" reversible="yes">
       <equation>OH + C2H6 [=] C2H5 + H2O</equation>
       <rateCoeff>
@@ -3045,7 +3050,7 @@
       <products>C2H5:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0114     -->
+    <!--   reaction 0114    -->
     <reaction id="0114" reversible="yes">
       <equation>OH + CH2CO [=] HCCO + H2O</equation>
       <rateCoeff>
@@ -3059,8 +3064,8 @@
       <products>H2O:1 HCCO:1</products>
     </reaction>
 
-    <!--    reaction 0115     -->
-    <reaction id="0115" reversible="yes">
+    <!--   reaction 0115    -->
+    <reaction duplicate="yes" id="0115" reversible="yes">
       <equation>2 HO2 [=] O2 + H2O2</equation>
       <rateCoeff>
         <Arrhenius>
@@ -3073,8 +3078,8 @@
       <products>O2:1 H2O2:1</products>
     </reaction>
 
-    <!--    reaction 0116     -->
-    <reaction id="0116" reversible="yes">
+    <!--   reaction 0116    -->
+    <reaction duplicate="yes" id="0116" reversible="yes">
       <equation>2 HO2 [=] O2 + H2O2</equation>
       <rateCoeff>
         <Arrhenius>
@@ -3087,7 +3092,7 @@
       <products>O2:1 H2O2:1</products>
     </reaction>
 
-    <!--    reaction 0117     -->
+    <!--   reaction 0117    -->
     <reaction id="0117" reversible="yes">
       <equation>HO2 + CH2 [=] OH + CH2O</equation>
       <rateCoeff>
@@ -3101,7 +3106,7 @@
       <products>CH2O:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0118     -->
+    <!--   reaction 0118    -->
     <reaction id="0118" reversible="yes">
       <equation>HO2 + CH3 [=] O2 + CH4</equation>
       <rateCoeff>
@@ -3115,7 +3120,7 @@
       <products>CH4:1 O2:1</products>
     </reaction>
 
-    <!--    reaction 0119     -->
+    <!--   reaction 0119    -->
     <reaction id="0119" reversible="yes">
       <equation>HO2 + CH3 [=] OH + CH3O</equation>
       <rateCoeff>
@@ -3129,7 +3134,7 @@
       <products>CH3O:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0120     -->
+    <!--   reaction 0120    -->
     <reaction id="0120" reversible="yes">
       <equation>HO2 + CO [=] OH + CO2</equation>
       <rateCoeff>
@@ -3143,7 +3148,7 @@
       <products>CO2:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0121     -->
+    <!--   reaction 0121    -->
     <reaction id="0121" reversible="yes">
       <equation>HO2 + CH2O [=] HCO + H2O2</equation>
       <rateCoeff>
@@ -3157,7 +3162,7 @@
       <products>HCO:1 H2O2:1</products>
     </reaction>
 
-    <!--    reaction 0122     -->
+    <!--   reaction 0122    -->
     <reaction id="0122" reversible="yes">
       <equation>C + O2 [=] O + CO</equation>
       <rateCoeff>
@@ -3171,7 +3176,7 @@
       <products>CO:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0123     -->
+    <!--   reaction 0123    -->
     <reaction id="0123" reversible="yes">
       <equation>C + CH2 [=] H + C2H</equation>
       <rateCoeff>
@@ -3185,7 +3190,7 @@
       <products>H:1 C2H:1</products>
     </reaction>
 
-    <!--    reaction 0124     -->
+    <!--   reaction 0124    -->
     <reaction id="0124" reversible="yes">
       <equation>C + CH3 [=] H + C2H2</equation>
       <rateCoeff>
@@ -3199,7 +3204,7 @@
       <products>H:1 C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0125     -->
+    <!--   reaction 0125    -->
     <reaction id="0125" reversible="yes">
       <equation>CH + O2 [=] O + HCO</equation>
       <rateCoeff>
@@ -3213,7 +3218,7 @@
       <products>HCO:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0126     -->
+    <!--   reaction 0126    -->
     <reaction id="0126" reversible="yes">
       <equation>CH + H2 [=] H + CH2</equation>
       <rateCoeff>
@@ -3227,7 +3232,7 @@
       <products>H:1 CH2:1</products>
     </reaction>
 
-    <!--    reaction 0127     -->
+    <!--   reaction 0127    -->
     <reaction id="0127" reversible="yes">
       <equation>CH + H2O [=] H + CH2O</equation>
       <rateCoeff>
@@ -3241,7 +3246,7 @@
       <products>CH2O:1 H:1</products>
     </reaction>
 
-    <!--    reaction 0128     -->
+    <!--   reaction 0128    -->
     <reaction id="0128" reversible="yes">
       <equation>CH + CH2 [=] H + C2H2</equation>
       <rateCoeff>
@@ -3255,7 +3260,7 @@
       <products>H:1 C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0129     -->
+    <!--   reaction 0129    -->
     <reaction id="0129" reversible="yes">
       <equation>CH + CH3 [=] H + C2H3</equation>
       <rateCoeff>
@@ -3269,7 +3274,7 @@
       <products>H:1 C2H3:1</products>
     </reaction>
 
-    <!--    reaction 0130     -->
+    <!--   reaction 0130    -->
     <reaction id="0130" reversible="yes">
       <equation>CH + CH4 [=] H + C2H4</equation>
       <rateCoeff>
@@ -3283,7 +3288,7 @@
       <products>H:1 C2H4:1</products>
     </reaction>
 
-    <!--    reaction 0131     -->
+    <!--   reaction 0131    -->
     <reaction id="0131" reversible="yes" type="falloff">
       <equation>CH + CO (+ M) [=] HCCO (+ M)</equation>
       <rateCoeff>
@@ -3304,7 +3309,7 @@
       <products>HCCO:1</products>
     </reaction>
 
-    <!--    reaction 0132     -->
+    <!--   reaction 0132    -->
     <reaction id="0132" reversible="yes">
       <equation>CH + CO2 [=] HCO + CO</equation>
       <rateCoeff>
@@ -3318,7 +3323,7 @@
       <products>CO:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0133     -->
+    <!--   reaction 0133    -->
     <reaction id="0133" reversible="yes">
       <equation>CH + CH2O [=] H + CH2CO</equation>
       <rateCoeff>
@@ -3332,7 +3337,7 @@
       <products>H:1 CH2CO:1</products>
     </reaction>
 
-    <!--    reaction 0134     -->
+    <!--   reaction 0134    -->
     <reaction id="0134" reversible="yes">
       <equation>CH + HCCO [=] CO + C2H2</equation>
       <rateCoeff>
@@ -3346,7 +3351,7 @@
       <products>CO:1 C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0135     -->
+    <!--   reaction 0135    -->
     <reaction id="0135" reversible="no">
       <equation>CH2 + O2 =] OH + H + CO</equation>
       <rateCoeff>
@@ -3360,7 +3365,7 @@
       <products>H:1 CO:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0136     -->
+    <!--   reaction 0136    -->
     <reaction id="0136" reversible="yes">
       <equation>CH2 + H2 [=] H + CH3</equation>
       <rateCoeff>
@@ -3374,7 +3379,7 @@
       <products>H:1 CH3:1</products>
     </reaction>
 
-    <!--    reaction 0137     -->
+    <!--   reaction 0137    -->
     <reaction id="0137" reversible="yes">
       <equation>2 CH2 [=] H2 + C2H2</equation>
       <rateCoeff>
@@ -3388,7 +3393,7 @@
       <products>H2:1 C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0138     -->
+    <!--   reaction 0138    -->
     <reaction id="0138" reversible="yes">
       <equation>CH2 + CH3 [=] H + C2H4</equation>
       <rateCoeff>
@@ -3402,7 +3407,7 @@
       <products>H:1 C2H4:1</products>
     </reaction>
 
-    <!--    reaction 0139     -->
+    <!--   reaction 0139    -->
     <reaction id="0139" reversible="yes">
       <equation>CH2 + CH4 [=] 2 CH3</equation>
       <rateCoeff>
@@ -3416,7 +3421,7 @@
       <products>CH3:2</products>
     </reaction>
 
-    <!--    reaction 0140     -->
+    <!--   reaction 0140    -->
     <reaction id="0140" reversible="yes" type="falloff">
       <equation>CH2 + CO (+ M) [=] CH2CO (+ M)</equation>
       <rateCoeff>
@@ -3437,7 +3442,7 @@
       <products>CH2CO:1</products>
     </reaction>
 
-    <!--    reaction 0141     -->
+    <!--   reaction 0141    -->
     <reaction id="0141" reversible="yes">
       <equation>CH2 + HCCO [=] C2H3 + CO</equation>
       <rateCoeff>
@@ -3451,7 +3456,7 @@
       <products>CO:1 C2H3:1</products>
     </reaction>
 
-    <!--    reaction 0142     -->
+    <!--   reaction 0142    -->
     <reaction id="0142" reversible="yes">
       <equation>CH2(S) + N2 [=] CH2 + N2</equation>
       <rateCoeff>
@@ -3465,7 +3470,7 @@
       <products>CH2:1 N2:1</products>
     </reaction>
 
-    <!--    reaction 0143     -->
+    <!--   reaction 0143    -->
     <reaction id="0143" reversible="yes">
       <equation>CH2(S) + AR [=] CH2 + AR</equation>
       <rateCoeff>
@@ -3479,7 +3484,7 @@
       <products>CH2:1 AR:1</products>
     </reaction>
 
-    <!--    reaction 0144     -->
+    <!--   reaction 0144    -->
     <reaction id="0144" reversible="yes">
       <equation>CH2(S) + O2 [=] H + OH + CO</equation>
       <rateCoeff>
@@ -3493,7 +3498,7 @@
       <products>H:1 CO:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0145     -->
+    <!--   reaction 0145    -->
     <reaction id="0145" reversible="yes">
       <equation>CH2(S) + O2 [=] CO + H2O</equation>
       <rateCoeff>
@@ -3507,7 +3512,7 @@
       <products>H2O:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0146     -->
+    <!--   reaction 0146    -->
     <reaction id="0146" reversible="yes">
       <equation>CH2(S) + H2 [=] CH3 + H</equation>
       <rateCoeff>
@@ -3521,7 +3526,7 @@
       <products>H:1 CH3:1</products>
     </reaction>
 
-    <!--    reaction 0147     -->
+    <!--   reaction 0147    -->
     <reaction id="0147" reversible="yes" type="falloff">
       <equation>CH2(S) + H2O (+ M) [=] CH3OH (+ M)</equation>
       <rateCoeff>
@@ -3542,7 +3547,7 @@
       <products>CH3OH:1</products>
     </reaction>
 
-    <!--    reaction 0148     -->
+    <!--   reaction 0148    -->
     <reaction id="0148" reversible="yes">
       <equation>CH2(S) + H2O [=] CH2 + H2O</equation>
       <rateCoeff>
@@ -3556,7 +3561,7 @@
       <products>CH2:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0149     -->
+    <!--   reaction 0149    -->
     <reaction id="0149" reversible="yes">
       <equation>CH2(S) + CH3 [=] H + C2H4</equation>
       <rateCoeff>
@@ -3570,7 +3575,7 @@
       <products>H:1 C2H4:1</products>
     </reaction>
 
-    <!--    reaction 0150     -->
+    <!--   reaction 0150    -->
     <reaction id="0150" reversible="yes">
       <equation>CH2(S) + CH4 [=] 2 CH3</equation>
       <rateCoeff>
@@ -3584,7 +3589,7 @@
       <products>CH3:2</products>
     </reaction>
 
-    <!--    reaction 0151     -->
+    <!--   reaction 0151    -->
     <reaction id="0151" reversible="yes">
       <equation>CH2(S) + CO [=] CH2 + CO</equation>
       <rateCoeff>
@@ -3598,7 +3603,7 @@
       <products>CH2:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0152     -->
+    <!--   reaction 0152    -->
     <reaction id="0152" reversible="yes">
       <equation>CH2(S) + CO2 [=] CH2 + CO2</equation>
       <rateCoeff>
@@ -3612,7 +3617,7 @@
       <products>CH2:1 CO2:1</products>
     </reaction>
 
-    <!--    reaction 0153     -->
+    <!--   reaction 0153    -->
     <reaction id="0153" reversible="yes">
       <equation>CH2(S) + CO2 [=] CO + CH2O</equation>
       <rateCoeff>
@@ -3626,7 +3631,7 @@
       <products>CH2O:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0154     -->
+    <!--   reaction 0154    -->
     <reaction id="0154" reversible="yes">
       <equation>CH2(S) + C2H6 [=] CH3 + C2H5</equation>
       <rateCoeff>
@@ -3640,7 +3645,7 @@
       <products>C2H5:1 CH3:1</products>
     </reaction>
 
-    <!--    reaction 0155     -->
+    <!--   reaction 0155    -->
     <reaction id="0155" reversible="yes">
       <equation>CH3 + O2 [=] O + CH3O</equation>
       <rateCoeff>
@@ -3654,7 +3659,7 @@
       <products>CH3O:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0156     -->
+    <!--   reaction 0156    -->
     <reaction id="0156" reversible="yes">
       <equation>CH3 + O2 [=] OH + CH2O</equation>
       <rateCoeff>
@@ -3668,7 +3673,7 @@
       <products>CH2O:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0157     -->
+    <!--   reaction 0157    -->
     <reaction id="0157" reversible="yes">
       <equation>CH3 + H2O2 [=] HO2 + CH4</equation>
       <rateCoeff>
@@ -3682,7 +3687,7 @@
       <products>CH4:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0158     -->
+    <!--   reaction 0158    -->
     <reaction id="0158" reversible="yes" type="falloff">
       <equation>2 CH3 (+ M) [=] C2H6 (+ M)</equation>
       <rateCoeff>
@@ -3703,7 +3708,7 @@
       <products>C2H6:1</products>
     </reaction>
 
-    <!--    reaction 0159     -->
+    <!--   reaction 0159    -->
     <reaction id="0159" reversible="yes">
       <equation>2 CH3 [=] H + C2H5</equation>
       <rateCoeff>
@@ -3717,7 +3722,7 @@
       <products>H:1 C2H5:1</products>
     </reaction>
 
-    <!--    reaction 0160     -->
+    <!--   reaction 0160    -->
     <reaction id="0160" reversible="yes">
       <equation>CH3 + HCO [=] CH4 + CO</equation>
       <rateCoeff>
@@ -3731,7 +3736,7 @@
       <products>CO:1 CH4:1</products>
     </reaction>
 
-    <!--    reaction 0161     -->
+    <!--   reaction 0161    -->
     <reaction id="0161" reversible="yes">
       <equation>CH3 + CH2O [=] HCO + CH4</equation>
       <rateCoeff>
@@ -3745,7 +3750,7 @@
       <products>CH4:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0162     -->
+    <!--   reaction 0162    -->
     <reaction id="0162" reversible="yes">
       <equation>CH3 + CH3OH [=] CH2OH + CH4</equation>
       <rateCoeff>
@@ -3759,7 +3764,7 @@
       <products>CH2OH:1 CH4:1</products>
     </reaction>
 
-    <!--    reaction 0163     -->
+    <!--   reaction 0163    -->
     <reaction id="0163" reversible="yes">
       <equation>CH3 + CH3OH [=] CH3O + CH4</equation>
       <rateCoeff>
@@ -3773,7 +3778,7 @@
       <products>CH3O:1 CH4:1</products>
     </reaction>
 
-    <!--    reaction 0164     -->
+    <!--   reaction 0164    -->
     <reaction id="0164" reversible="yes">
       <equation>CH3 + C2H4 [=] C2H3 + CH4</equation>
       <rateCoeff>
@@ -3787,7 +3792,7 @@
       <products>CH4:1 C2H3:1</products>
     </reaction>
 
-    <!--    reaction 0165     -->
+    <!--   reaction 0165    -->
     <reaction id="0165" reversible="yes">
       <equation>CH3 + C2H6 [=] C2H5 + CH4</equation>
       <rateCoeff>
@@ -3801,7 +3806,7 @@
       <products>C2H5:1 CH4:1</products>
     </reaction>
 
-    <!--    reaction 0166     -->
+    <!--   reaction 0166    -->
     <reaction id="0166" reversible="yes">
       <equation>HCO + H2O [=] H + CO + H2O</equation>
       <rateCoeff>
@@ -3815,7 +3820,7 @@
       <products>H:1 H2O:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0167     -->
+    <!--   reaction 0167    -->
     <reaction id="0167" reversible="yes" type="threeBody">
       <equation>HCO + M [=] H + CO + M</equation>
       <rateCoeff>
@@ -3830,7 +3835,7 @@
       <products>H:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0168     -->
+    <!--   reaction 0168    -->
     <reaction id="0168" reversible="yes">
       <equation>HCO + O2 [=] HO2 + CO</equation>
       <rateCoeff>
@@ -3844,7 +3849,7 @@
       <products>CO:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0169     -->
+    <!--   reaction 0169    -->
     <reaction id="0169" reversible="yes">
       <equation>CH2OH + O2 [=] HO2 + CH2O</equation>
       <rateCoeff>
@@ -3858,7 +3863,7 @@
       <products>CH2O:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0170     -->
+    <!--   reaction 0170    -->
     <reaction id="0170" reversible="yes">
       <equation>CH3O + O2 [=] HO2 + CH2O</equation>
       <rateCoeff>
@@ -3872,7 +3877,7 @@
       <products>CH2O:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0171     -->
+    <!--   reaction 0171    -->
     <reaction id="0171" reversible="yes">
       <equation>C2H + O2 [=] HCO + CO</equation>
       <rateCoeff>
@@ -3886,7 +3891,7 @@
       <products>CO:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0172     -->
+    <!--   reaction 0172    -->
     <reaction id="0172" reversible="yes">
       <equation>C2H + H2 [=] H + C2H2</equation>
       <rateCoeff>
@@ -3900,7 +3905,7 @@
       <products>H:1 C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0173     -->
+    <!--   reaction 0173    -->
     <reaction id="0173" reversible="yes">
       <equation>C2H3 + O2 [=] HCO + CH2O</equation>
       <rateCoeff>
@@ -3914,7 +3919,7 @@
       <products>CH2O:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0174     -->
+    <!--   reaction 0174    -->
     <reaction id="0174" reversible="yes" type="falloff">
       <equation>C2H4 (+ M) [=] H2 + C2H2 (+ M)</equation>
       <rateCoeff>
@@ -3935,7 +3940,7 @@
       <products>H2:1 C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0175     -->
+    <!--   reaction 0175    -->
     <reaction id="0175" reversible="yes">
       <equation>C2H5 + O2 [=] HO2 + C2H4</equation>
       <rateCoeff>
@@ -3949,7 +3954,7 @@
       <products>C2H4:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0176     -->
+    <!--   reaction 0176    -->
     <reaction id="0176" reversible="yes">
       <equation>HCCO + O2 [=] OH + 2 CO</equation>
       <rateCoeff>
@@ -3963,7 +3968,7 @@
       <products>CO:2 OH:1</products>
     </reaction>
 
-    <!--    reaction 0177     -->
+    <!--   reaction 0177    -->
     <reaction id="0177" reversible="yes">
       <equation>2 HCCO [=] 2 CO + C2H2</equation>
       <rateCoeff>
@@ -3977,7 +3982,7 @@
       <products>CO:2 C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0178     -->
+    <!--   reaction 0178    -->
     <reaction id="0178" reversible="yes">
       <equation>N + NO [=] N2 + O</equation>
       <rateCoeff>
@@ -3991,7 +3996,7 @@
       <products>N2:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0179     -->
+    <!--   reaction 0179    -->
     <reaction id="0179" reversible="yes">
       <equation>N + O2 [=] NO + O</equation>
       <rateCoeff>
@@ -4005,7 +4010,7 @@
       <products>O:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0180     -->
+    <!--   reaction 0180    -->
     <reaction id="0180" reversible="yes">
       <equation>N + OH [=] NO + H</equation>
       <rateCoeff>
@@ -4019,7 +4024,7 @@
       <products>H:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0181     -->
+    <!--   reaction 0181    -->
     <reaction id="0181" reversible="yes">
       <equation>N2O + O [=] N2 + O2</equation>
       <rateCoeff>
@@ -4033,7 +4038,7 @@
       <products>N2:1 O2:1</products>
     </reaction>
 
-    <!--    reaction 0182     -->
+    <!--   reaction 0182    -->
     <reaction id="0182" reversible="yes">
       <equation>N2O + O [=] 2 NO</equation>
       <rateCoeff>
@@ -4047,7 +4052,7 @@
       <products>NO:2</products>
     </reaction>
 
-    <!--    reaction 0183     -->
+    <!--   reaction 0183    -->
     <reaction id="0183" reversible="yes">
       <equation>N2O + H [=] N2 + OH</equation>
       <rateCoeff>
@@ -4061,7 +4066,7 @@
       <products>N2:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0184     -->
+    <!--   reaction 0184    -->
     <reaction id="0184" reversible="yes">
       <equation>N2O + OH [=] N2 + HO2</equation>
       <rateCoeff>
@@ -4075,7 +4080,7 @@
       <products>N2:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0185     -->
+    <!--   reaction 0185    -->
     <reaction id="0185" reversible="yes" type="falloff">
       <equation>N2O (+ M) [=] N2 + O (+ M)</equation>
       <rateCoeff>
@@ -4096,7 +4101,7 @@
       <products>N2:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0186     -->
+    <!--   reaction 0186    -->
     <reaction id="0186" reversible="yes">
       <equation>HO2 + NO [=] NO2 + OH</equation>
       <rateCoeff>
@@ -4110,7 +4115,7 @@
       <products>NO2:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0187     -->
+    <!--   reaction 0187    -->
     <reaction id="0187" reversible="yes" type="threeBody">
       <equation>NO + O + M [=] NO2 + M</equation>
       <rateCoeff>
@@ -4125,7 +4130,7 @@
       <products>NO2:1</products>
     </reaction>
 
-    <!--    reaction 0188     -->
+    <!--   reaction 0188    -->
     <reaction id="0188" reversible="yes">
       <equation>NO2 + O [=] NO + O2</equation>
       <rateCoeff>
@@ -4139,7 +4144,7 @@
       <products>O2:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0189     -->
+    <!--   reaction 0189    -->
     <reaction id="0189" reversible="yes">
       <equation>NO2 + H [=] NO + OH</equation>
       <rateCoeff>
@@ -4153,7 +4158,7 @@
       <products>OH:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0190     -->
+    <!--   reaction 0190    -->
     <reaction id="0190" reversible="yes">
       <equation>NH + O [=] NO + H</equation>
       <rateCoeff>
@@ -4167,7 +4172,7 @@
       <products>H:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0191     -->
+    <!--   reaction 0191    -->
     <reaction id="0191" reversible="yes">
       <equation>NH + H [=] N + H2</equation>
       <rateCoeff>
@@ -4181,7 +4186,7 @@
       <products>H2:1 N:1</products>
     </reaction>
 
-    <!--    reaction 0192     -->
+    <!--   reaction 0192    -->
     <reaction id="0192" reversible="yes">
       <equation>NH + OH [=] HNO + H</equation>
       <rateCoeff>
@@ -4195,7 +4200,7 @@
       <products>H:1 HNO:1</products>
     </reaction>
 
-    <!--    reaction 0193     -->
+    <!--   reaction 0193    -->
     <reaction id="0193" reversible="yes">
       <equation>NH + OH [=] N + H2O</equation>
       <rateCoeff>
@@ -4209,7 +4214,7 @@
       <products>H2O:1 N:1</products>
     </reaction>
 
-    <!--    reaction 0194     -->
+    <!--   reaction 0194    -->
     <reaction id="0194" reversible="yes">
       <equation>NH + O2 [=] HNO + O</equation>
       <rateCoeff>
@@ -4223,7 +4228,7 @@
       <products>O:1 HNO:1</products>
     </reaction>
 
-    <!--    reaction 0195     -->
+    <!--   reaction 0195    -->
     <reaction id="0195" reversible="yes">
       <equation>NH + O2 [=] NO + OH</equation>
       <rateCoeff>
@@ -4237,7 +4242,7 @@
       <products>OH:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0196     -->
+    <!--   reaction 0196    -->
     <reaction id="0196" reversible="yes">
       <equation>NH + N [=] N2 + H</equation>
       <rateCoeff>
@@ -4251,7 +4256,7 @@
       <products>H:1 N2:1</products>
     </reaction>
 
-    <!--    reaction 0197     -->
+    <!--   reaction 0197    -->
     <reaction id="0197" reversible="yes">
       <equation>NH + H2O [=] HNO + H2</equation>
       <rateCoeff>
@@ -4265,7 +4270,7 @@
       <products>H2:1 HNO:1</products>
     </reaction>
 
-    <!--    reaction 0198     -->
+    <!--   reaction 0198    -->
     <reaction id="0198" reversible="yes">
       <equation>NH + NO [=] N2 + OH</equation>
       <rateCoeff>
@@ -4279,7 +4284,7 @@
       <products>N2:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0199     -->
+    <!--   reaction 0199    -->
     <reaction id="0199" reversible="yes">
       <equation>NH + NO [=] N2O + H</equation>
       <rateCoeff>
@@ -4293,7 +4298,7 @@
       <products>H:1 N2O:1</products>
     </reaction>
 
-    <!--    reaction 0200     -->
+    <!--   reaction 0200    -->
     <reaction id="0200" reversible="yes">
       <equation>NH2 + O [=] OH + NH</equation>
       <rateCoeff>
@@ -4307,7 +4312,7 @@
       <products>NH:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0201     -->
+    <!--   reaction 0201    -->
     <reaction id="0201" reversible="yes">
       <equation>NH2 + O [=] H + HNO</equation>
       <rateCoeff>
@@ -4321,7 +4326,7 @@
       <products>H:1 HNO:1</products>
     </reaction>
 
-    <!--    reaction 0202     -->
+    <!--   reaction 0202    -->
     <reaction id="0202" reversible="yes">
       <equation>NH2 + H [=] NH + H2</equation>
       <rateCoeff>
@@ -4335,7 +4340,7 @@
       <products>NH:1 H2:1</products>
     </reaction>
 
-    <!--    reaction 0203     -->
+    <!--   reaction 0203    -->
     <reaction id="0203" reversible="yes">
       <equation>NH2 + OH [=] NH + H2O</equation>
       <rateCoeff>
@@ -4349,7 +4354,7 @@
       <products>NH:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0204     -->
+    <!--   reaction 0204    -->
     <reaction id="0204" reversible="yes">
       <equation>NNH [=] N2 + H</equation>
       <rateCoeff>
@@ -4363,7 +4368,7 @@
       <products>H:1 N2:1</products>
     </reaction>
 
-    <!--    reaction 0205     -->
+    <!--   reaction 0205    -->
     <reaction id="0205" reversible="yes" type="threeBody">
       <equation>NNH + M [=] N2 + H + M</equation>
       <rateCoeff>
@@ -4378,7 +4383,7 @@
       <products>H:1 N2:1</products>
     </reaction>
 
-    <!--    reaction 0206     -->
+    <!--   reaction 0206    -->
     <reaction id="0206" reversible="yes">
       <equation>NNH + O2 [=] HO2 + N2</equation>
       <rateCoeff>
@@ -4392,7 +4397,7 @@
       <products>N2:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0207     -->
+    <!--   reaction 0207    -->
     <reaction id="0207" reversible="yes">
       <equation>NNH + O [=] OH + N2</equation>
       <rateCoeff>
@@ -4406,7 +4411,7 @@
       <products>N2:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0208     -->
+    <!--   reaction 0208    -->
     <reaction id="0208" reversible="yes">
       <equation>NNH + O [=] NH + NO</equation>
       <rateCoeff>
@@ -4420,7 +4425,7 @@
       <products>NH:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0209     -->
+    <!--   reaction 0209    -->
     <reaction id="0209" reversible="yes">
       <equation>NNH + H [=] H2 + N2</equation>
       <rateCoeff>
@@ -4434,7 +4439,7 @@
       <products>H2:1 N2:1</products>
     </reaction>
 
-    <!--    reaction 0210     -->
+    <!--   reaction 0210    -->
     <reaction id="0210" reversible="yes">
       <equation>NNH + OH [=] H2O + N2</equation>
       <rateCoeff>
@@ -4448,7 +4453,7 @@
       <products>H2O:1 N2:1</products>
     </reaction>
 
-    <!--    reaction 0211     -->
+    <!--   reaction 0211    -->
     <reaction id="0211" reversible="yes">
       <equation>NNH + CH3 [=] CH4 + N2</equation>
       <rateCoeff>
@@ -4462,7 +4467,7 @@
       <products>N2:1 CH4:1</products>
     </reaction>
 
-    <!--    reaction 0212     -->
+    <!--   reaction 0212    -->
     <reaction id="0212" reversible="yes" type="threeBody">
       <equation>H + NO + M [=] HNO + M</equation>
       <rateCoeff>
@@ -4477,7 +4482,7 @@
       <products>HNO:1</products>
     </reaction>
 
-    <!--    reaction 0213     -->
+    <!--   reaction 0213    -->
     <reaction id="0213" reversible="yes">
       <equation>HNO + O [=] NO + OH</equation>
       <rateCoeff>
@@ -4491,7 +4496,7 @@
       <products>OH:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0214     -->
+    <!--   reaction 0214    -->
     <reaction id="0214" reversible="yes">
       <equation>HNO + H [=] H2 + NO</equation>
       <rateCoeff>
@@ -4505,7 +4510,7 @@
       <products>H2:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0215     -->
+    <!--   reaction 0215    -->
     <reaction id="0215" reversible="yes">
       <equation>HNO + OH [=] NO + H2O</equation>
       <rateCoeff>
@@ -4519,7 +4524,7 @@
       <products>H2O:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0216     -->
+    <!--   reaction 0216    -->
     <reaction id="0216" reversible="yes">
       <equation>HNO + O2 [=] HO2 + NO</equation>
       <rateCoeff>
@@ -4533,7 +4538,7 @@
       <products>HO2:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0217     -->
+    <!--   reaction 0217    -->
     <reaction id="0217" reversible="yes">
       <equation>CN + O [=] CO + N</equation>
       <rateCoeff>
@@ -4547,7 +4552,7 @@
       <products>CO:1 N:1</products>
     </reaction>
 
-    <!--    reaction 0218     -->
+    <!--   reaction 0218    -->
     <reaction id="0218" reversible="yes">
       <equation>CN + OH [=] NCO + H</equation>
       <rateCoeff>
@@ -4561,7 +4566,7 @@
       <products>H:1 NCO:1</products>
     </reaction>
 
-    <!--    reaction 0219     -->
+    <!--   reaction 0219    -->
     <reaction id="0219" reversible="yes">
       <equation>CN + H2O [=] HCN + OH</equation>
       <rateCoeff>
@@ -4575,7 +4580,7 @@
       <products>HCN:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0220     -->
+    <!--   reaction 0220    -->
     <reaction id="0220" reversible="yes">
       <equation>CN + O2 [=] NCO + O</equation>
       <rateCoeff>
@@ -4589,7 +4594,7 @@
       <products>O:1 NCO:1</products>
     </reaction>
 
-    <!--    reaction 0221     -->
+    <!--   reaction 0221    -->
     <reaction id="0221" reversible="yes">
       <equation>CN + H2 [=] HCN + H</equation>
       <rateCoeff>
@@ -4603,7 +4608,7 @@
       <products>H:1 HCN:1</products>
     </reaction>
 
-    <!--    reaction 0222     -->
+    <!--   reaction 0222    -->
     <reaction id="0222" reversible="yes">
       <equation>NCO + O [=] NO + CO</equation>
       <rateCoeff>
@@ -4617,7 +4622,7 @@
       <products>CO:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0223     -->
+    <!--   reaction 0223    -->
     <reaction id="0223" reversible="yes">
       <equation>NCO + H [=] NH + CO</equation>
       <rateCoeff>
@@ -4631,7 +4636,7 @@
       <products>NH:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0224     -->
+    <!--   reaction 0224    -->
     <reaction id="0224" reversible="yes">
       <equation>NCO + OH [=] NO + H + CO</equation>
       <rateCoeff>
@@ -4645,7 +4650,7 @@
       <products>H:1 CO:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0225     -->
+    <!--   reaction 0225    -->
     <reaction id="0225" reversible="yes">
       <equation>NCO + N [=] N2 + CO</equation>
       <rateCoeff>
@@ -4659,7 +4664,7 @@
       <products>N2:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0226     -->
+    <!--   reaction 0226    -->
     <reaction id="0226" reversible="yes">
       <equation>NCO + O2 [=] NO + CO2</equation>
       <rateCoeff>
@@ -4673,7 +4678,7 @@
       <products>CO2:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0227     -->
+    <!--   reaction 0227    -->
     <reaction id="0227" reversible="yes" type="threeBody">
       <equation>NCO + M [=] N + CO + M</equation>
       <rateCoeff>
@@ -4688,7 +4693,7 @@
       <products>CO:1 N:1</products>
     </reaction>
 
-    <!--    reaction 0228     -->
+    <!--   reaction 0228    -->
     <reaction id="0228" reversible="yes">
       <equation>NCO + NO [=] N2O + CO</equation>
       <rateCoeff>
@@ -4702,7 +4707,7 @@
       <products>CO:1 N2O:1</products>
     </reaction>
 
-    <!--    reaction 0229     -->
+    <!--   reaction 0229    -->
     <reaction id="0229" reversible="yes">
       <equation>NCO + NO [=] N2 + CO2</equation>
       <rateCoeff>
@@ -4716,7 +4721,7 @@
       <products>N2:1 CO2:1</products>
     </reaction>
 
-    <!--    reaction 0230     -->
+    <!--   reaction 0230    -->
     <reaction id="0230" reversible="yes" type="threeBody">
       <equation>HCN + M [=] H + CN + M</equation>
       <rateCoeff>
@@ -4731,7 +4736,7 @@
       <products>H:1 CN:1</products>
     </reaction>
 
-    <!--    reaction 0231     -->
+    <!--   reaction 0231    -->
     <reaction id="0231" reversible="yes">
       <equation>HCN + O [=] NCO + H</equation>
       <rateCoeff>
@@ -4745,7 +4750,7 @@
       <products>H:1 NCO:1</products>
     </reaction>
 
-    <!--    reaction 0232     -->
+    <!--   reaction 0232    -->
     <reaction id="0232" reversible="yes">
       <equation>HCN + O [=] NH + CO</equation>
       <rateCoeff>
@@ -4759,7 +4764,7 @@
       <products>NH:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0233     -->
+    <!--   reaction 0233    -->
     <reaction id="0233" reversible="yes">
       <equation>HCN + O [=] CN + OH</equation>
       <rateCoeff>
@@ -4773,7 +4778,7 @@
       <products>CN:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0234     -->
+    <!--   reaction 0234    -->
     <reaction id="0234" reversible="yes">
       <equation>HCN + OH [=] HOCN + H</equation>
       <rateCoeff>
@@ -4787,7 +4792,7 @@
       <products>HOCN:1 H:1</products>
     </reaction>
 
-    <!--    reaction 0235     -->
+    <!--   reaction 0235    -->
     <reaction id="0235" reversible="yes">
       <equation>HCN + OH [=] HNCO + H</equation>
       <rateCoeff>
@@ -4801,7 +4806,7 @@
       <products>HNCO:1 H:1</products>
     </reaction>
 
-    <!--    reaction 0236     -->
+    <!--   reaction 0236    -->
     <reaction id="0236" reversible="yes">
       <equation>HCN + OH [=] NH2 + CO</equation>
       <rateCoeff>
@@ -4815,7 +4820,7 @@
       <products>CO:1 NH2:1</products>
     </reaction>
 
-    <!--    reaction 0237     -->
+    <!--   reaction 0237    -->
     <reaction id="0237" reversible="yes" type="falloff">
       <equation>H + HCN (+ M) [=] H2CN (+ M)</equation>
       <rateCoeff>
@@ -4836,7 +4841,7 @@
       <products>H2CN:1</products>
     </reaction>
 
-    <!--    reaction 0238     -->
+    <!--   reaction 0238    -->
     <reaction id="0238" reversible="yes">
       <equation>H2CN + N [=] N2 + CH2</equation>
       <rateCoeff>
@@ -4850,7 +4855,7 @@
       <products>N2:1 CH2:1</products>
     </reaction>
 
-    <!--    reaction 0239     -->
+    <!--   reaction 0239    -->
     <reaction id="0239" reversible="yes">
       <equation>C + N2 [=] CN + N</equation>
       <rateCoeff>
@@ -4864,7 +4869,7 @@
       <products>CN:1 N:1</products>
     </reaction>
 
-    <!--    reaction 0240     -->
+    <!--   reaction 0240    -->
     <reaction id="0240" reversible="yes">
       <equation>CH + N2 [=] HCN + N</equation>
       <rateCoeff>
@@ -4878,7 +4883,7 @@
       <products>HCN:1 N:1</products>
     </reaction>
 
-    <!--    reaction 0241     -->
+    <!--   reaction 0241    -->
     <reaction id="0241" reversible="yes" type="falloff">
       <equation>CH + N2 (+ M) [=] HCNN (+ M)</equation>
       <rateCoeff>
@@ -4899,7 +4904,7 @@
       <products>HCNN:1</products>
     </reaction>
 
-    <!--    reaction 0242     -->
+    <!--   reaction 0242    -->
     <reaction id="0242" reversible="yes">
       <equation>CH2 + N2 [=] HCN + NH</equation>
       <rateCoeff>
@@ -4913,7 +4918,7 @@
       <products>NH:1 HCN:1</products>
     </reaction>
 
-    <!--    reaction 0243     -->
+    <!--   reaction 0243    -->
     <reaction id="0243" reversible="yes">
       <equation>CH2(S) + N2 [=] NH + HCN</equation>
       <rateCoeff>
@@ -4927,7 +4932,7 @@
       <products>NH:1 HCN:1</products>
     </reaction>
 
-    <!--    reaction 0244     -->
+    <!--   reaction 0244    -->
     <reaction id="0244" reversible="yes">
       <equation>C + NO [=] CN + O</equation>
       <rateCoeff>
@@ -4941,7 +4946,7 @@
       <products>CN:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0245     -->
+    <!--   reaction 0245    -->
     <reaction id="0245" reversible="yes">
       <equation>C + NO [=] CO + N</equation>
       <rateCoeff>
@@ -4955,7 +4960,7 @@
       <products>CO:1 N:1</products>
     </reaction>
 
-    <!--    reaction 0246     -->
+    <!--   reaction 0246    -->
     <reaction id="0246" reversible="yes">
       <equation>CH + NO [=] HCN + O</equation>
       <rateCoeff>
@@ -4969,7 +4974,7 @@
       <products>HCN:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0247     -->
+    <!--   reaction 0247    -->
     <reaction id="0247" reversible="yes">
       <equation>CH + NO [=] H + NCO</equation>
       <rateCoeff>
@@ -4983,7 +4988,7 @@
       <products>H:1 NCO:1</products>
     </reaction>
 
-    <!--    reaction 0248     -->
+    <!--   reaction 0248    -->
     <reaction id="0248" reversible="yes">
       <equation>CH + NO [=] N + HCO</equation>
       <rateCoeff>
@@ -4997,7 +5002,7 @@
       <products>HCO:1 N:1</products>
     </reaction>
 
-    <!--    reaction 0249     -->
+    <!--   reaction 0249    -->
     <reaction id="0249" reversible="yes">
       <equation>CH2 + NO [=] H + HNCO</equation>
       <rateCoeff>
@@ -5011,7 +5016,7 @@
       <products>HNCO:1 H:1</products>
     </reaction>
 
-    <!--    reaction 0250     -->
+    <!--   reaction 0250    -->
     <reaction id="0250" reversible="yes">
       <equation>CH2 + NO [=] OH + HCN</equation>
       <rateCoeff>
@@ -5025,7 +5030,7 @@
       <products>HCN:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0251     -->
+    <!--   reaction 0251    -->
     <reaction id="0251" reversible="yes">
       <equation>CH2 + NO [=] H + HCNO</equation>
       <rateCoeff>
@@ -5039,7 +5044,7 @@
       <products>H:1 HCNO:1</products>
     </reaction>
 
-    <!--    reaction 0252     -->
+    <!--   reaction 0252    -->
     <reaction id="0252" reversible="yes">
       <equation>CH2(S) + NO [=] H + HNCO</equation>
       <rateCoeff>
@@ -5053,7 +5058,7 @@
       <products>HNCO:1 H:1</products>
     </reaction>
 
-    <!--    reaction 0253     -->
+    <!--   reaction 0253    -->
     <reaction id="0253" reversible="yes">
       <equation>CH2(S) + NO [=] OH + HCN</equation>
       <rateCoeff>
@@ -5067,7 +5072,7 @@
       <products>HCN:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0254     -->
+    <!--   reaction 0254    -->
     <reaction id="0254" reversible="yes">
       <equation>CH2(S) + NO [=] H + HCNO</equation>
       <rateCoeff>
@@ -5081,7 +5086,7 @@
       <products>H:1 HCNO:1</products>
     </reaction>
 
-    <!--    reaction 0255     -->
+    <!--   reaction 0255    -->
     <reaction id="0255" reversible="yes">
       <equation>CH3 + NO [=] HCN + H2O</equation>
       <rateCoeff>
@@ -5095,7 +5100,7 @@
       <products>H2O:1 HCN:1</products>
     </reaction>
 
-    <!--    reaction 0256     -->
+    <!--   reaction 0256    -->
     <reaction id="0256" reversible="yes">
       <equation>CH3 + NO [=] H2CN + OH</equation>
       <rateCoeff>
@@ -5109,7 +5114,7 @@
       <products>H2CN:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0257     -->
+    <!--   reaction 0257    -->
     <reaction id="0257" reversible="yes">
       <equation>HCNN + O [=] CO + H + N2</equation>
       <rateCoeff>
@@ -5123,7 +5128,7 @@
       <products>H:1 N2:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0258     -->
+    <!--   reaction 0258    -->
     <reaction id="0258" reversible="yes">
       <equation>HCNN + O [=] HCN + NO</equation>
       <rateCoeff>
@@ -5137,7 +5142,7 @@
       <products>HCN:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0259     -->
+    <!--   reaction 0259    -->
     <reaction id="0259" reversible="yes">
       <equation>HCNN + O2 [=] O + HCO + N2</equation>
       <rateCoeff>
@@ -5151,7 +5156,7 @@
       <products>N2:1 HCO:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0260     -->
+    <!--   reaction 0260    -->
     <reaction id="0260" reversible="yes">
       <equation>HCNN + OH [=] H + HCO + N2</equation>
       <rateCoeff>
@@ -5165,7 +5170,7 @@
       <products>H:1 N2:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0261     -->
+    <!--   reaction 0261    -->
     <reaction id="0261" reversible="yes">
       <equation>HCNN + H [=] CH2 + N2</equation>
       <rateCoeff>
@@ -5179,7 +5184,7 @@
       <products>CH2:1 N2:1</products>
     </reaction>
 
-    <!--    reaction 0262     -->
+    <!--   reaction 0262    -->
     <reaction id="0262" reversible="yes">
       <equation>HNCO + O [=] NH + CO2</equation>
       <rateCoeff>
@@ -5193,7 +5198,7 @@
       <products>NH:1 CO2:1</products>
     </reaction>
 
-    <!--    reaction 0263     -->
+    <!--   reaction 0263    -->
     <reaction id="0263" reversible="yes">
       <equation>HNCO + O [=] HNO + CO</equation>
       <rateCoeff>
@@ -5207,7 +5212,7 @@
       <products>CO:1 HNO:1</products>
     </reaction>
 
-    <!--    reaction 0264     -->
+    <!--   reaction 0264    -->
     <reaction id="0264" reversible="yes">
       <equation>HNCO + O [=] NCO + OH</equation>
       <rateCoeff>
@@ -5221,7 +5226,7 @@
       <products>OH:1 NCO:1</products>
     </reaction>
 
-    <!--    reaction 0265     -->
+    <!--   reaction 0265    -->
     <reaction id="0265" reversible="yes">
       <equation>HNCO + H [=] NH2 + CO</equation>
       <rateCoeff>
@@ -5235,7 +5240,7 @@
       <products>CO:1 NH2:1</products>
     </reaction>
 
-    <!--    reaction 0266     -->
+    <!--   reaction 0266    -->
     <reaction id="0266" reversible="yes">
       <equation>HNCO + H [=] H2 + NCO</equation>
       <rateCoeff>
@@ -5249,7 +5254,7 @@
       <products>H2:1 NCO:1</products>
     </reaction>
 
-    <!--    reaction 0267     -->
+    <!--   reaction 0267    -->
     <reaction id="0267" reversible="yes">
       <equation>HNCO + OH [=] NCO + H2O</equation>
       <rateCoeff>
@@ -5263,7 +5268,7 @@
       <products>H2O:1 NCO:1</products>
     </reaction>
 
-    <!--    reaction 0268     -->
+    <!--   reaction 0268    -->
     <reaction id="0268" reversible="yes">
       <equation>HNCO + OH [=] NH2 + CO2</equation>
       <rateCoeff>
@@ -5277,7 +5282,7 @@
       <products>CO2:1 NH2:1</products>
     </reaction>
 
-    <!--    reaction 0269     -->
+    <!--   reaction 0269    -->
     <reaction id="0269" reversible="yes" type="threeBody">
       <equation>HNCO + M [=] NH + CO + M</equation>
       <rateCoeff>
@@ -5292,7 +5297,7 @@
       <products>NH:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0270     -->
+    <!--   reaction 0270    -->
     <reaction id="0270" reversible="yes">
       <equation>HCNO + H [=] H + HNCO</equation>
       <rateCoeff>
@@ -5306,7 +5311,7 @@
       <products>HNCO:1 H:1</products>
     </reaction>
 
-    <!--    reaction 0271     -->
+    <!--   reaction 0271    -->
     <reaction id="0271" reversible="yes">
       <equation>HCNO + H [=] OH + HCN</equation>
       <rateCoeff>
@@ -5320,7 +5325,7 @@
       <products>HCN:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0272     -->
+    <!--   reaction 0272    -->
     <reaction id="0272" reversible="yes">
       <equation>HCNO + H [=] NH2 + CO</equation>
       <rateCoeff>
@@ -5334,7 +5339,7 @@
       <products>CO:1 NH2:1</products>
     </reaction>
 
-    <!--    reaction 0273     -->
+    <!--   reaction 0273    -->
     <reaction id="0273" reversible="yes">
       <equation>HOCN + H [=] H + HNCO</equation>
       <rateCoeff>
@@ -5348,7 +5353,7 @@
       <products>HNCO:1 H:1</products>
     </reaction>
 
-    <!--    reaction 0274     -->
+    <!--   reaction 0274    -->
     <reaction id="0274" reversible="yes">
       <equation>HCCO + NO [=] HCNO + CO</equation>
       <rateCoeff>
@@ -5362,7 +5367,7 @@
       <products>CO:1 HCNO:1</products>
     </reaction>
 
-    <!--    reaction 0275     -->
+    <!--   reaction 0275    -->
     <reaction id="0275" reversible="yes">
       <equation>CH3 + N [=] H2CN + H</equation>
       <rateCoeff>
@@ -5376,7 +5381,7 @@
       <products>H:1 H2CN:1</products>
     </reaction>
 
-    <!--    reaction 0276     -->
+    <!--   reaction 0276    -->
     <reaction id="0276" reversible="yes">
       <equation>CH3 + N [=] HCN + H2</equation>
       <rateCoeff>
@@ -5390,7 +5395,7 @@
       <products>H2:1 HCN:1</products>
     </reaction>
 
-    <!--    reaction 0277     -->
+    <!--   reaction 0277    -->
     <reaction id="0277" reversible="yes">
       <equation>NH3 + H [=] NH2 + H2</equation>
       <rateCoeff>
@@ -5404,7 +5409,7 @@
       <products>H2:1 NH2:1</products>
     </reaction>
 
-    <!--    reaction 0278     -->
+    <!--   reaction 0278    -->
     <reaction id="0278" reversible="yes">
       <equation>NH3 + OH [=] NH2 + H2O</equation>
       <rateCoeff>
@@ -5418,7 +5423,7 @@
       <products>H2O:1 NH2:1</products>
     </reaction>
 
-    <!--    reaction 0279     -->
+    <!--   reaction 0279    -->
     <reaction id="0279" reversible="yes">
       <equation>NH3 + O [=] NH2 + OH</equation>
       <rateCoeff>
@@ -5432,7 +5437,7 @@
       <products>OH:1 NH2:1</products>
     </reaction>
 
-    <!--    reaction 0280     -->
+    <!--   reaction 0280    -->
     <reaction id="0280" reversible="yes">
       <equation>NH + CO2 [=] HNO + CO</equation>
       <rateCoeff>
@@ -5446,7 +5451,7 @@
       <products>CO:1 HNO:1</products>
     </reaction>
 
-    <!--    reaction 0281     -->
+    <!--   reaction 0281    -->
     <reaction id="0281" reversible="yes">
       <equation>CN + NO2 [=] NCO + NO</equation>
       <rateCoeff>
@@ -5460,7 +5465,7 @@
       <products>NO:1 NCO:1</products>
     </reaction>
 
-    <!--    reaction 0282     -->
+    <!--   reaction 0282    -->
     <reaction id="0282" reversible="yes">
       <equation>NCO + NO2 [=] N2O + CO2</equation>
       <rateCoeff>
@@ -5474,7 +5479,7 @@
       <products>CO2:1 N2O:1</products>
     </reaction>
 
-    <!--    reaction 0283     -->
+    <!--   reaction 0283    -->
     <reaction id="0283" reversible="yes">
       <equation>N + CO2 [=] NO + CO</equation>
       <rateCoeff>
@@ -5488,7 +5493,7 @@
       <products>CO:1 NO:1</products>
     </reaction>
 
-    <!--    reaction 0284     -->
+    <!--   reaction 0284    -->
     <reaction id="0284" reversible="no">
       <equation>O + CH3 =] H + H2 + CO</equation>
       <rateCoeff>
@@ -5502,7 +5507,7 @@
       <products>H2:1 H:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0285     -->
+    <!--   reaction 0285    -->
     <reaction id="0285" reversible="yes">
       <equation>O + C2H4 [=] H + CH2CHO</equation>
       <rateCoeff>
@@ -5516,7 +5521,7 @@
       <products>H:1 CH2CHO:1</products>
     </reaction>
 
-    <!--    reaction 0286     -->
+    <!--   reaction 0286    -->
     <reaction id="0286" reversible="yes">
       <equation>O + C2H5 [=] H + CH3CHO</equation>
       <rateCoeff>
@@ -5530,8 +5535,8 @@
       <products>H:1 CH3CHO:1</products>
     </reaction>
 
-    <!--    reaction 0287     -->
-    <reaction id="0287" reversible="yes">
+    <!--   reaction 0287    -->
+    <reaction duplicate="yes" id="0287" reversible="yes">
       <equation>OH + HO2 [=] O2 + H2O</equation>
       <rateCoeff>
         <Arrhenius>
@@ -5544,7 +5549,7 @@
       <products>H2O:1 O2:1</products>
     </reaction>
 
-    <!--    reaction 0288     -->
+    <!--   reaction 0288    -->
     <reaction id="0288" reversible="no">
       <equation>OH + CH3 =] H2 + CH2O</equation>
       <rateCoeff>
@@ -5558,7 +5563,7 @@
       <products>H2:1 CH2O:1</products>
     </reaction>
 
-    <!--    reaction 0289     -->
+    <!--   reaction 0289    -->
     <reaction id="0289" reversible="yes" type="falloff">
       <equation>CH + H2 (+ M) [=] CH3 (+ M)</equation>
       <rateCoeff>
@@ -5579,7 +5584,7 @@
       <products>CH3:1</products>
     </reaction>
 
-    <!--    reaction 0290     -->
+    <!--   reaction 0290    -->
     <reaction id="0290" reversible="no">
       <equation>CH2 + O2 =] 2 H + CO2</equation>
       <rateCoeff>
@@ -5593,7 +5598,7 @@
       <products>H:2 CO2:1</products>
     </reaction>
 
-    <!--    reaction 0291     -->
+    <!--   reaction 0291    -->
     <reaction id="0291" reversible="yes">
       <equation>CH2 + O2 [=] O + CH2O</equation>
       <rateCoeff>
@@ -5607,7 +5612,7 @@
       <products>CH2O:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0292     -->
+    <!--   reaction 0292    -->
     <reaction id="0292" reversible="no">
       <equation>CH2 + CH2 =] 2 H + C2H2</equation>
       <rateCoeff>
@@ -5621,7 +5626,7 @@
       <products>H:2 C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0293     -->
+    <!--   reaction 0293    -->
     <reaction id="0293" reversible="no">
       <equation>CH2(S) + H2O =] H2 + CH2O</equation>
       <rateCoeff>
@@ -5635,7 +5640,7 @@
       <products>H2:1 CH2O:1</products>
     </reaction>
 
-    <!--    reaction 0294     -->
+    <!--   reaction 0294    -->
     <reaction id="0294" reversible="yes">
       <equation>C2H3 + O2 [=] O + CH2CHO</equation>
       <rateCoeff>
@@ -5649,7 +5654,7 @@
       <products>CH2CHO:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0295     -->
+    <!--   reaction 0295    -->
     <reaction id="0295" reversible="yes">
       <equation>C2H3 + O2 [=] HO2 + C2H2</equation>
       <rateCoeff>
@@ -5663,7 +5668,7 @@
       <products>HO2:1 C2H2:1</products>
     </reaction>
 
-    <!--    reaction 0296     -->
+    <!--   reaction 0296    -->
     <reaction id="0296" reversible="yes">
       <equation>O + CH3CHO [=] OH + CH2CHO</equation>
       <rateCoeff>
@@ -5677,7 +5682,7 @@
       <products>CH2CHO:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0297     -->
+    <!--   reaction 0297    -->
     <reaction id="0297" reversible="no">
       <equation>O + CH3CHO =] OH + CH3 + CO</equation>
       <rateCoeff>
@@ -5691,7 +5696,7 @@
       <products>CH3:1 CO:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0298     -->
+    <!--   reaction 0298    -->
     <reaction id="0298" reversible="no">
       <equation>O2 + CH3CHO =] HO2 + CH3 + CO</equation>
       <rateCoeff>
@@ -5705,7 +5710,7 @@
       <products>CO:1 CH3:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0299     -->
+    <!--   reaction 0299    -->
     <reaction id="0299" reversible="yes">
       <equation>H + CH3CHO [=] CH2CHO + H2</equation>
       <rateCoeff>
@@ -5719,7 +5724,7 @@
       <products>H2:1 CH2CHO:1</products>
     </reaction>
 
-    <!--    reaction 0300     -->
+    <!--   reaction 0300    -->
     <reaction id="0300" reversible="no">
       <equation>H + CH3CHO =] CH3 + H2 + CO</equation>
       <rateCoeff>
@@ -5733,7 +5738,7 @@
       <products>H2:1 CH3:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0301     -->
+    <!--   reaction 0301    -->
     <reaction id="0301" reversible="no">
       <equation>OH + CH3CHO =] CH3 + H2O + CO</equation>
       <rateCoeff>
@@ -5747,7 +5752,7 @@
       <products>H2O:1 CH3:1 CO:1</products>
     </reaction>
 
-    <!--    reaction 0302     -->
+    <!--   reaction 0302    -->
     <reaction id="0302" reversible="no">
       <equation>HO2 + CH3CHO =] CH3 + H2O2 + CO</equation>
       <rateCoeff>
@@ -5761,7 +5766,7 @@
       <products>CH3:1 CO:1 H2O2:1</products>
     </reaction>
 
-    <!--    reaction 0303     -->
+    <!--   reaction 0303    -->
     <reaction id="0303" reversible="no">
       <equation>CH3 + CH3CHO =] CH3 + CH4 + CO</equation>
       <rateCoeff>
@@ -5775,7 +5780,7 @@
       <products>CO:1 CH3:1 CH4:1</products>
     </reaction>
 
-    <!--    reaction 0304     -->
+    <!--   reaction 0304    -->
     <reaction id="0304" reversible="yes" type="falloff">
       <equation>H + CH2CO (+ M) [=] CH2CHO (+ M)</equation>
       <rateCoeff>
@@ -5796,7 +5801,7 @@
       <products>CH2CHO:1</products>
     </reaction>
 
-    <!--    reaction 0305     -->
+    <!--   reaction 0305    -->
     <reaction id="0305" reversible="no">
       <equation>O + CH2CHO =] H + CH2 + CO2</equation>
       <rateCoeff>
@@ -5810,7 +5815,7 @@
       <products>H:1 CH2:1 CO2:1</products>
     </reaction>
 
-    <!--    reaction 0306     -->
+    <!--   reaction 0306    -->
     <reaction id="0306" reversible="no">
       <equation>O2 + CH2CHO =] OH + CO + CH2O</equation>
       <rateCoeff>
@@ -5824,7 +5829,7 @@
       <products>CH2O:1 CO:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0307     -->
+    <!--   reaction 0307    -->
     <reaction id="0307" reversible="no">
       <equation>O2 + CH2CHO =] OH + 2 HCO</equation>
       <rateCoeff>
@@ -5838,7 +5843,7 @@
       <products>HCO:2 OH:1</products>
     </reaction>
 
-    <!--    reaction 0308     -->
+    <!--   reaction 0308    -->
     <reaction id="0308" reversible="yes">
       <equation>H + CH2CHO [=] CH3 + HCO</equation>
       <rateCoeff>
@@ -5852,7 +5857,7 @@
       <products>CH3:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0309     -->
+    <!--   reaction 0309    -->
     <reaction id="0309" reversible="yes">
       <equation>H + CH2CHO [=] CH2CO + H2</equation>
       <rateCoeff>
@@ -5866,7 +5871,7 @@
       <products>H2:1 CH2CO:1</products>
     </reaction>
 
-    <!--    reaction 0310     -->
+    <!--   reaction 0310    -->
     <reaction id="0310" reversible="yes">
       <equation>OH + CH2CHO [=] H2O + CH2CO</equation>
       <rateCoeff>
@@ -5880,7 +5885,7 @@
       <products>H2O:1 CH2CO:1</products>
     </reaction>
 
-    <!--    reaction 0311     -->
+    <!--   reaction 0311    -->
     <reaction id="0311" reversible="yes">
       <equation>OH + CH2CHO [=] HCO + CH2OH</equation>
       <rateCoeff>
@@ -5894,7 +5899,7 @@
       <products>CH2OH:1 HCO:1</products>
     </reaction>
 
-    <!--    reaction 0312     -->
+    <!--   reaction 0312    -->
     <reaction id="0312" reversible="yes" type="falloff">
       <equation>CH3 + C2H5 (+ M) [=] C3H8 (+ M)</equation>
       <rateCoeff>
@@ -5915,7 +5920,7 @@
       <products>C3H8:1</products>
     </reaction>
 
-    <!--    reaction 0313     -->
+    <!--   reaction 0313    -->
     <reaction id="0313" reversible="yes">
       <equation>O + C3H8 [=] OH + C3H7</equation>
       <rateCoeff>
@@ -5929,7 +5934,7 @@
       <products>C3H7:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0314     -->
+    <!--   reaction 0314    -->
     <reaction id="0314" reversible="yes">
       <equation>H + C3H8 [=] C3H7 + H2</equation>
       <rateCoeff>
@@ -5943,7 +5948,7 @@
       <products>H2:1 C3H7:1</products>
     </reaction>
 
-    <!--    reaction 0315     -->
+    <!--   reaction 0315    -->
     <reaction id="0315" reversible="yes">
       <equation>OH + C3H8 [=] C3H7 + H2O</equation>
       <rateCoeff>
@@ -5957,7 +5962,7 @@
       <products>C3H7:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0316     -->
+    <!--   reaction 0316    -->
     <reaction id="0316" reversible="yes">
       <equation>C3H7 + H2O2 [=] HO2 + C3H8</equation>
       <rateCoeff>
@@ -5971,7 +5976,7 @@
       <products>HO2:1 C3H8:1</products>
     </reaction>
 
-    <!--    reaction 0317     -->
+    <!--   reaction 0317    -->
     <reaction id="0317" reversible="yes">
       <equation>CH3 + C3H8 [=] C3H7 + CH4</equation>
       <rateCoeff>
@@ -5985,7 +5990,7 @@
       <products>C3H7:1 CH4:1</products>
     </reaction>
 
-    <!--    reaction 0318     -->
+    <!--   reaction 0318    -->
     <reaction id="0318" reversible="yes" type="falloff">
       <equation>CH3 + C2H4 (+ M) [=] C3H7 (+ M)</equation>
       <rateCoeff>
@@ -6006,7 +6011,7 @@
       <products>C3H7:1</products>
     </reaction>
 
-    <!--    reaction 0319     -->
+    <!--   reaction 0319    -->
     <reaction id="0319" reversible="yes">
       <equation>O + C3H7 [=] C2H5 + CH2O</equation>
       <rateCoeff>
@@ -6020,7 +6025,7 @@
       <products>CH2O:1 C2H5:1</products>
     </reaction>
 
-    <!--    reaction 0320     -->
+    <!--   reaction 0320    -->
     <reaction id="0320" reversible="yes" type="falloff">
       <equation>H + C3H7 (+ M) [=] C3H8 (+ M)</equation>
       <rateCoeff>
@@ -6041,7 +6046,7 @@
       <products>C3H8:1</products>
     </reaction>
 
-    <!--    reaction 0321     -->
+    <!--   reaction 0321    -->
     <reaction id="0321" reversible="yes">
       <equation>H + C3H7 [=] CH3 + C2H5</equation>
       <rateCoeff>
@@ -6055,7 +6060,7 @@
       <products>C2H5:1 CH3:1</products>
     </reaction>
 
-    <!--    reaction 0322     -->
+    <!--   reaction 0322    -->
     <reaction id="0322" reversible="yes">
       <equation>OH + C3H7 [=] C2H5 + CH2OH</equation>
       <rateCoeff>
@@ -6069,7 +6074,7 @@
       <products>CH2OH:1 C2H5:1</products>
     </reaction>
 
-    <!--    reaction 0323     -->
+    <!--   reaction 0323    -->
     <reaction id="0323" reversible="yes">
       <equation>HO2 + C3H7 [=] O2 + C3H8</equation>
       <rateCoeff>
@@ -6083,7 +6088,7 @@
       <products>O2:1 C3H8:1</products>
     </reaction>
 
-    <!--    reaction 0324     -->
+    <!--   reaction 0324    -->
     <reaction id="0324" reversible="no">
       <equation>HO2 + C3H7 =] OH + C2H5 + CH2O</equation>
       <rateCoeff>
@@ -6097,7 +6102,7 @@
       <products>CH2O:1 C2H5:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0325     -->
+    <!--   reaction 0325    -->
     <reaction id="0325" reversible="yes">
       <equation>CH3 + C3H7 [=] 2 C2H5</equation>
       <rateCoeff>
diff --git a/data/inputs/h2o2.xml b/data/inputs/h2o2.xml
index 886d96517..70bf3694b 100644
--- a/data/inputs/h2o2.xml
+++ b/data/inputs/h2o2.xml
@@ -1,7 +1,12 @@
 <ctml>
+  <validate reactions="yes" species="yes"/>
 
-  <!--     phase ohmech      -->
+  <!--    phase ohmech     -->
   <phase dim="3" id="ohmech">
+    <validation>
+      <duplicateReactions>halt</duplicateReactions>
+      <thermo>warn</thermo>
+    </validation>
     <elementArray datasrc="elements.xml"> O  H  Ar </elementArray>
     <speciesArray datasrc="#species_data"> H2  H  O  O2  OH  H2O  HO2  H2O2  AR </speciesArray>
     <reactionArray datasrc="#reaction_data"/>
@@ -10,10 +15,10 @@
     <transport model="None"/>
   </phase>
 
-  <!--      species definitions      -->
+  <!--     species definitions     -->
   <speciesData id="species_data">
 
-    <!--     species H2     -->
+    <!--    species H2    -->
     <species name="H2">
       <atomArray>H:2 </atomArray>
       <thermo>
@@ -38,7 +43,7 @@
       </transport>
     </species>
 
-    <!--     species H     -->
+    <!--    species H    -->
     <species name="H">
       <atomArray>H:1 </atomArray>
       <thermo>
@@ -63,7 +68,7 @@
       </transport>
     </species>
 
-    <!--     species O     -->
+    <!--    species O    -->
     <species name="O">
       <atomArray>O:1 </atomArray>
       <thermo>
@@ -88,7 +93,7 @@
       </transport>
     </species>
 
-    <!--     species O2     -->
+    <!--    species O2    -->
     <species name="O2">
       <atomArray>O:2 </atomArray>
       <thermo>
@@ -113,7 +118,7 @@
       </transport>
     </species>
 
-    <!--     species OH     -->
+    <!--    species OH    -->
     <species name="OH">
       <atomArray>H:1 O:1 </atomArray>
       <thermo>
@@ -138,7 +143,7 @@
       </transport>
     </species>
 
-    <!--     species H2O     -->
+    <!--    species H2O    -->
     <species name="H2O">
       <atomArray>H:2 O:1 </atomArray>
       <thermo>
@@ -163,7 +168,7 @@
       </transport>
     </species>
 
-    <!--     species HO2     -->
+    <!--    species HO2    -->
     <species name="HO2">
       <atomArray>H:1 O:2 </atomArray>
       <thermo>
@@ -188,7 +193,7 @@
       </transport>
     </species>
 
-    <!--     species H2O2     -->
+    <!--    species H2O2    -->
     <species name="H2O2">
       <atomArray>H:2 O:2 </atomArray>
       <thermo>
@@ -213,7 +218,7 @@
       </transport>
     </species>
 
-    <!--     species AR     -->
+    <!--    species AR    -->
     <species name="AR">
       <atomArray>Ar:1 </atomArray>
       <thermo>
@@ -240,7 +245,7 @@
   </speciesData>
   <reactionData id="reaction_data">
 
-    <!--    reaction 0001     -->
+    <!--   reaction 0001    -->
     <reaction id="0001" reversible="yes" type="threeBody">
       <equation>2 O + M [=] O2 + M</equation>
       <rateCoeff>
@@ -255,7 +260,7 @@
       <products>O2:1</products>
     </reaction>
 
-    <!--    reaction 0002     -->
+    <!--   reaction 0002    -->
     <reaction id="0002" reversible="yes" type="threeBody">
       <equation>O + H + M [=] OH + M</equation>
       <rateCoeff>
@@ -270,7 +275,7 @@
       <products>OH:1</products>
     </reaction>
 
-    <!--    reaction 0003     -->
+    <!--   reaction 0003    -->
     <reaction id="0003" reversible="yes">
       <equation>O + H2 [=] H + OH</equation>
       <rateCoeff>
@@ -284,7 +289,7 @@
       <products>H:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0004     -->
+    <!--   reaction 0004    -->
     <reaction id="0004" reversible="yes">
       <equation>O + HO2 [=] OH + O2</equation>
       <rateCoeff>
@@ -298,7 +303,7 @@
       <products>O2:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0005     -->
+    <!--   reaction 0005    -->
     <reaction id="0005" reversible="yes">
       <equation>O + H2O2 [=] OH + HO2</equation>
       <rateCoeff>
@@ -312,7 +317,7 @@
       <products>HO2:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0006     -->
+    <!--   reaction 0006    -->
     <reaction id="0006" reversible="yes">
       <equation>H + 2 O2 [=] HO2 + O2</equation>
       <rateCoeff>
@@ -326,7 +331,7 @@
       <products>HO2:1 O2:1</products>
     </reaction>
 
-    <!--    reaction 0007     -->
+    <!--   reaction 0007    -->
     <reaction id="0007" reversible="yes">
       <equation>H + O2 + H2O [=] HO2 + H2O</equation>
       <rateCoeff>
@@ -340,7 +345,7 @@
       <products>H2O:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0008     -->
+    <!--   reaction 0008    -->
     <reaction id="0008" reversible="yes">
       <equation>H + O2 + AR [=] HO2 + AR</equation>
       <rateCoeff>
@@ -354,7 +359,7 @@
       <products>AR:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0009     -->
+    <!--   reaction 0009    -->
     <reaction id="0009" reversible="yes">
       <equation>H + O2 [=] O + OH</equation>
       <rateCoeff>
@@ -368,7 +373,7 @@
       <products>O:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0010     -->
+    <!--   reaction 0010    -->
     <reaction id="0010" reversible="yes" type="threeBody">
       <equation>2 H + M [=] H2 + M</equation>
       <rateCoeff>
@@ -383,7 +388,7 @@
       <products>H2:1</products>
     </reaction>
 
-    <!--    reaction 0011     -->
+    <!--   reaction 0011    -->
     <reaction id="0011" reversible="yes">
       <equation>2 H + H2 [=] 2 H2</equation>
       <rateCoeff>
@@ -397,7 +402,7 @@
       <products>H2:2</products>
     </reaction>
 
-    <!--    reaction 0012     -->
+    <!--   reaction 0012    -->
     <reaction id="0012" reversible="yes">
       <equation>2 H + H2O [=] H2 + H2O</equation>
       <rateCoeff>
@@ -411,7 +416,7 @@
       <products>H2:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0013     -->
+    <!--   reaction 0013    -->
     <reaction id="0013" reversible="yes" type="threeBody">
       <equation>H + OH + M [=] H2O + M</equation>
       <rateCoeff>
@@ -426,7 +431,7 @@
       <products>H2O:1</products>
     </reaction>
 
-    <!--    reaction 0014     -->
+    <!--   reaction 0014    -->
     <reaction id="0014" reversible="yes">
       <equation>H + HO2 [=] O + H2O</equation>
       <rateCoeff>
@@ -440,7 +445,7 @@
       <products>H2O:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0015     -->
+    <!--   reaction 0015    -->
     <reaction id="0015" reversible="yes">
       <equation>H + HO2 [=] O2 + H2</equation>
       <rateCoeff>
@@ -454,7 +459,7 @@
       <products>H2:1 O2:1</products>
     </reaction>
 
-    <!--    reaction 0016     -->
+    <!--   reaction 0016    -->
     <reaction id="0016" reversible="yes">
       <equation>H + HO2 [=] 2 OH</equation>
       <rateCoeff>
@@ -468,7 +473,7 @@
       <products>OH:2</products>
     </reaction>
 
-    <!--    reaction 0017     -->
+    <!--   reaction 0017    -->
     <reaction id="0017" reversible="yes">
       <equation>H + H2O2 [=] HO2 + H2</equation>
       <rateCoeff>
@@ -482,7 +487,7 @@
       <products>H2:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0018     -->
+    <!--   reaction 0018    -->
     <reaction id="0018" reversible="yes">
       <equation>H + H2O2 [=] OH + H2O</equation>
       <rateCoeff>
@@ -496,7 +501,7 @@
       <products>H2O:1 OH:1</products>
     </reaction>
 
-    <!--    reaction 0019     -->
+    <!--   reaction 0019    -->
     <reaction id="0019" reversible="yes">
       <equation>OH + H2 [=] H + H2O</equation>
       <rateCoeff>
@@ -510,7 +515,7 @@
       <products>H:1 H2O:1</products>
     </reaction>
 
-    <!--    reaction 0020     -->
+    <!--   reaction 0020    -->
     <reaction id="0020" reversible="yes" type="falloff">
       <equation>2 OH (+ M) [=] H2O2 (+ M)</equation>
       <rateCoeff>
@@ -531,7 +536,7 @@
       <products>H2O2:1</products>
     </reaction>
 
-    <!--    reaction 0021     -->
+    <!--   reaction 0021    -->
     <reaction id="0021" reversible="yes">
       <equation>2 OH [=] O + H2O</equation>
       <rateCoeff>
@@ -545,8 +550,8 @@
       <products>H2O:1 O:1</products>
     </reaction>
 
-    <!--    reaction 0022     -->
-    <reaction id="0022" reversible="yes">
+    <!--   reaction 0022    -->
+    <reaction duplicate="yes" id="0022" reversible="yes">
       <equation>OH + HO2 [=] O2 + H2O</equation>
       <rateCoeff>
         <Arrhenius>
@@ -559,8 +564,8 @@
       <products>H2O:1 O2:1</products>
     </reaction>
 
-    <!--    reaction 0023     -->
-    <reaction id="0023" reversible="yes">
+    <!--   reaction 0023    -->
+    <reaction duplicate="yes" id="0023" reversible="yes">
       <equation>OH + H2O2 [=] HO2 + H2O</equation>
       <rateCoeff>
         <Arrhenius>
@@ -573,8 +578,8 @@
       <products>H2O:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0024     -->
-    <reaction id="0024" reversible="yes">
+    <!--   reaction 0024    -->
+    <reaction duplicate="yes" id="0024" reversible="yes">
       <equation>OH + H2O2 [=] HO2 + H2O</equation>
       <rateCoeff>
         <Arrhenius>
@@ -587,8 +592,8 @@
       <products>H2O:1 HO2:1</products>
     </reaction>
 
-    <!--    reaction 0025     -->
-    <reaction id="0025" reversible="yes">
+    <!--   reaction 0025    -->
+    <reaction duplicate="yes" id="0025" reversible="yes">
       <equation>2 HO2 [=] O2 + H2O2</equation>
       <rateCoeff>
         <Arrhenius>
@@ -601,8 +606,8 @@
       <products>O2:1 H2O2:1</products>
     </reaction>
 
-    <!--    reaction 0026     -->
-    <reaction id="0026" reversible="yes">
+    <!--   reaction 0026    -->
+    <reaction duplicate="yes" id="0026" reversible="yes">
       <equation>2 HO2 [=] O2 + H2O2</equation>
       <rateCoeff>
         <Arrhenius>
@@ -615,8 +620,8 @@
       <products>O2:1 H2O2:1</products>
     </reaction>
 
-    <!--    reaction 0027     -->
-    <reaction id="0027" reversible="yes">
+    <!--   reaction 0027    -->
+    <reaction duplicate="yes" id="0027" reversible="yes">
       <equation>OH + HO2 [=] O2 + H2O</equation>
       <rateCoeff>
         <Arrhenius>
diff --git a/data/inputs/silane.xml b/data/inputs/silane.xml
index d32973fca..aaee12483 100644
--- a/data/inputs/silane.xml
+++ b/data/inputs/silane.xml
@@ -1,7 +1,12 @@
 <ctml>
+  <validate reactions="yes" species="yes"/>
 
-  <!--     phase silane      -->
+  <!--    phase silane     -->
   <phase dim="3" id="silane">
+    <validation>
+      <duplicateReactions>halt</duplicateReactions>
+      <thermo>warn</thermo>
+    </validation>
     <elementArray datasrc="elements.xml"> Si  H  He </elementArray>
     <speciesArray datasrc="#species_data">
      H2  H  HE  SIH4  SI  SIH  SIH2  SIH3  H3SISIH  SI2H6 
@@ -12,10 +17,10 @@
     <transport model="None"/>
   </phase>
 
-  <!--      species definitions      -->
+  <!--     species definitions     -->
   <speciesData id="species_data">
 
-    <!--     species H2     -->
+    <!--    species H2    -->
     <species name="H2">
       <atomArray>H:2 </atomArray>
       <thermo>
@@ -32,7 +37,7 @@
       </thermo>
     </species>
 
-    <!--     species H     -->
+    <!--    species H    -->
     <species name="H">
       <atomArray>H:1 </atomArray>
       <thermo>
@@ -49,7 +54,7 @@
       </thermo>
     </species>
 
-    <!--     species HE     -->
+    <!--    species HE    -->
     <species name="HE">
       <atomArray>He:1 </atomArray>
       <thermo>
@@ -66,7 +71,7 @@
       </thermo>
     </species>
 
-    <!--     species SIH4     -->
+    <!--    species SIH4    -->
     <species name="SIH4">
       <atomArray>H:4 Si:1 </atomArray>
       <thermo>
@@ -83,7 +88,7 @@
       </thermo>
     </species>
 
-    <!--     species SI     -->
+    <!--    species SI    -->
     <species name="SI">
       <atomArray>Si:1 </atomArray>
       <thermo>
@@ -100,7 +105,7 @@
       </thermo>
     </species>
 
-    <!--     species SIH     -->
+    <!--    species SIH    -->
     <species name="SIH">
       <atomArray>H:1 Si:1 </atomArray>
       <thermo>
@@ -117,7 +122,7 @@
       </thermo>
     </species>
 
-    <!--     species SIH2     -->
+    <!--    species SIH2    -->
     <species name="SIH2">
       <atomArray>H:2 Si:1 </atomArray>
       <thermo>
@@ -134,7 +139,7 @@
       </thermo>
     </species>
 
-    <!--     species SIH3     -->
+    <!--    species SIH3    -->
     <species name="SIH3">
       <atomArray>H:3 Si:1 </atomArray>
       <thermo>
@@ -151,7 +156,7 @@
       </thermo>
     </species>
 
-    <!--     species H3SISIH     -->
+    <!--    species H3SISIH    -->
     <species name="H3SISIH">
       <atomArray>H:4 Si:2 </atomArray>
       <thermo>
@@ -168,7 +173,7 @@
       </thermo>
     </species>
 
-    <!--     species SI2H6     -->
+    <!--    species SI2H6    -->
     <species name="SI2H6">
       <atomArray>H:6 Si:2 </atomArray>
       <thermo>
@@ -185,7 +190,7 @@
       </thermo>
     </species>
 
-    <!--     species H2SISIH2     -->
+    <!--    species H2SISIH2    -->
     <species name="H2SISIH2">
       <atomArray>H:4 Si:2 </atomArray>
       <thermo>
@@ -202,7 +207,7 @@
       </thermo>
     </species>
 
-    <!--     species SI3H8     -->
+    <!--    species SI3H8    -->
     <species name="SI3H8">
       <atomArray>H:8 Si:3 </atomArray>
       <thermo>
@@ -219,7 +224,7 @@
       </thermo>
     </species>
 
-    <!--     species SI2     -->
+    <!--    species SI2    -->
     <species name="SI2">
       <atomArray>Si:2 </atomArray>
       <thermo>
@@ -236,7 +241,7 @@
       </thermo>
     </species>
 
-    <!--     species SI3     -->
+    <!--    species SI3    -->
     <species name="SI3">
       <atomArray>Si:3 </atomArray>
       <thermo>
@@ -255,7 +260,7 @@
   </speciesData>
   <reactionData id="reaction_data">
 
-    <!--    reaction 0001     -->
+    <!--   reaction 0001    -->
     <reaction id="0001" reversible="yes">
       <equation>SIH4 + H [=] SIH3 + H2</equation>
       <rateCoeff>
@@ -269,7 +274,7 @@
       <products>H2:1 SIH3:1</products>
     </reaction>
 
-    <!--    reaction 0002     -->
+    <!--   reaction 0002    -->
     <reaction id="0002" reversible="yes" type="threeBody">
       <equation>SIH4 + M [=] SIH3 + H + M</equation>
       <rateCoeff>
@@ -283,7 +288,7 @@
       <products>H:1 SIH3:1</products>
     </reaction>
 
-    <!--    reaction 0003     -->
+    <!--   reaction 0003    -->
     <reaction id="0003" reversible="yes">
       <equation>SIH3 + H [=] SIH2 + H2</equation>
       <rateCoeff>
@@ -297,7 +302,7 @@
       <products>H2:1 SIH2:1</products>
     </reaction>
 
-    <!--    reaction 0004     -->
+    <!--   reaction 0004    -->
     <reaction id="0004" reversible="yes" type="threeBody">
       <equation>SI + SI + M [=] SI2 + M</equation>
       <rateCoeff>
@@ -311,7 +316,7 @@
       <products>SI2:1</products>
     </reaction>
 
-    <!--    reaction 0005     -->
+    <!--   reaction 0005    -->
     <reaction id="0005" reversible="yes">
       <equation>SIH4 + SIH2 [=] H3SISIH + H2</equation>
       <rateCoeff>
@@ -325,7 +330,7 @@
       <products>H2:1 H3SISIH:1</products>
     </reaction>
 
-    <!--    reaction 0006     -->
+    <!--   reaction 0006    -->
     <reaction id="0006" reversible="yes">
       <equation>SIH + H2 [=] SIH2 + H</equation>
       <rateCoeff>
@@ -339,7 +344,7 @@
       <products>H:1 SIH2:1</products>
     </reaction>
 
-    <!--    reaction 0007     -->
+    <!--   reaction 0007    -->
     <reaction id="0007" reversible="yes">
       <equation>SIH + SIH4 [=] H3SISIH + H</equation>
       <rateCoeff>
@@ -353,7 +358,7 @@
       <products>H:1 H3SISIH:1</products>
     </reaction>
 
-    <!--    reaction 0008     -->
+    <!--   reaction 0008    -->
     <reaction id="0008" reversible="yes">
       <equation>SI + H2 [=] SIH + H</equation>
       <rateCoeff>
@@ -367,7 +372,7 @@
       <products>H:1 SIH:1</products>
     </reaction>
 
-    <!--    reaction 0009     -->
+    <!--   reaction 0009    -->
     <reaction id="0009" reversible="yes" type="falloff">
       <equation>SIH4 (+ M) [=] SIH2 + H2 (+ M)</equation>
       <rateCoeff>
@@ -388,7 +393,7 @@
       <products>H2:1 SIH2:1</products>
     </reaction>
 
-    <!--    reaction 0010     -->
+    <!--   reaction 0010    -->
     <reaction id="0010" reversible="yes" type="falloff">
       <equation>H3SISIH (+ M) [=] H2SISIH2 (+ M)</equation>
       <rateCoeff>
@@ -409,7 +414,7 @@
       <products>H2SISIH2:1</products>
     </reaction>
 
-    <!--    reaction 0011     -->
+    <!--   reaction 0011    -->
     <reaction id="0011" reversible="yes" type="falloff">
       <equation>SI3H8 (+ M) [=] SIH4 + H3SISIH (+ M)</equation>
       <rateCoeff>
@@ -430,7 +435,7 @@
       <products>SIH4:1 H3SISIH:1</products>
     </reaction>
 
-    <!--    reaction 0012     -->
+    <!--   reaction 0012    -->
     <reaction id="0012" reversible="yes" type="falloff">
       <equation>SI3H8 (+ M) [=] SIH2 + SI2H6 (+ M)</equation>
       <rateCoeff>
@@ -451,7 +456,7 @@
       <products>SI2H6:1 SIH2:1</products>
     </reaction>
 
-    <!--    reaction 0013     -->
+    <!--   reaction 0013    -->
     <reaction id="0013" reversible="yes" type="falloff">
       <equation>SI2H6 (+ M) [=] H2 + H3SISIH (+ M)</equation>
       <rateCoeff>
@@ -472,7 +477,7 @@
       <products>H2:1 H3SISIH:1</products>
     </reaction>
 
-    <!--    reaction 0014     -->
+    <!--   reaction 0014    -->
     <reaction id="0014" reversible="yes" type="falloff">
       <equation>SI2H6 (+ M) [=] SIH4 + SIH2 (+ M)</equation>
       <rateCoeff>
diff --git a/tools/src/Makefile.in b/tools/src/Makefile.in
index 20eaace88..11fe7a9f2 100755
--- a/tools/src/Makefile.in
+++ b/tools/src/Makefile.in
@@ -9,7 +9,7 @@ LCXX_FLAGS = -L$(LIBDIR)  @CXXFLAGS@
 LOCAL_LIBS = -lcantera @math_libs@ @LAPACK_LIBRARY@ @BLAS_LIBRARY@ -lctcxx 
 
 LCXX_END_LIBS = @LCXX_END_LIBS@
-OBJS = ck2ctml.o
+OBJS = ck2cti.o
 
 DEPENDS = $(OBJS:.o=.d)
 
@@ -20,10 +20,10 @@ CANTERALIB_DEP = @buildlib@/libcantera.a \
 .cpp.o:
 	@CXX@ -c $< @DEFS@  $(INCDIR) @CXXFLAGS@ $(CXX_FLAGS) 
 
-all: $(BINDIR)/ck2ctml
+all: $(BINDIR)/ck2cti
 
-$(BINDIR)/ck2ctml: ck2ctml.o $(CONVLIB_DEP) $(CANTERALIB_DEP)
-	@CXX@ -o $(BINDIR)/ck2ctml ck2ctml.o $(LCXX_FLAGS) -lconverters $(LOCAL_LIBS) \
+$(BINDIR)/ck2cti: ck2cti.o $(CONVLIB_DEP) $(CANTERALIB_DEP)
+	@CXX@ -o $(BINDIR)/ck2cti ck2cti.o $(LCXX_FLAGS) -lconverters $(LOCAL_LIBS) \
                $(LCXX_END_LIBS)
 clean:
 	$(RM) *.o *.*~