[cantera]: few edits to get everything working

Cantera/Makefile.am

@@ -1,4 +1,4 @@
 # $Id: $
 
 # will need to add python and matlab 
-SUBDIRS                 = src user cxx ext
+SUBDIRS                 =  ext src user cxx

Cantera/ext/f2c_libs/Makefile.am

@@ -36,7 +36,7 @@ cc_sources              = abort_.c c_log.c d_atn2.c dfe.c d_prod.c \
 
 # arithchk.c getarg_.c iargc_.c 
 
-h_sources               = f2c.h fio.h fmt.h fp.h lio.h rawio.h sysdep1.h
+h_sources               = f2c.h sysdep1.h fio.h fmt.h fp.h lio.h rawio.h
 
 AM_CPPFLAGS             = -I.
 AM_CXXFLAGS             = $(AM_CPPFLAGS)
@@ -57,7 +57,6 @@ all:
 	cp -u signal1.h0 signal1.h
 	cp $(h_sources) $(top_builddir)/build/include/
 
-
 __top_builddir__build_lib_libctf2c_la_LDFLAGS      = $(all_libraries) -release $(GENERIC_RELEASE)
 __top_builddir__build_lib_libctf2c_la_SOURCES      = $(cc_sources) $(h_sources)
 

Cantera/ext/f2c_libs/signal1.h

@@ -0,0 +1,35 @@
+/* You may need to adjust the definition of signal1 to supply a */
+/* cast to the correct argument type.  This detail is system- and */
+/* compiler-dependent.   The #define below assumes signal.h declares */
+/* type SIG_PF for the signal function's second argument. */
+
+/* For some C++ compilers, "#define Sigarg_t ..." may be appropriate. */
+
+#include <signal.h>
+
+#ifndef Sigret_t
+#define Sigret_t void
+#endif
+#ifndef Sigarg_t
+#ifdef KR_headers
+#define Sigarg_t
+#else
+#define Sigarg_t int
+#endif
+#endif /*Sigarg_t*/
+
+#ifdef USE_SIG_PF	/* compile with -DUSE_SIG_PF under IRIX */
+#define sig_pf SIG_PF
+#else
+typedef Sigret_t (*sig_pf)(Sigarg_t);
+#endif
+
+#define signal1(a,b) signal(a,(sig_pf)b)
+
+#ifdef __cplusplus
+#define Sigarg ...
+#define Use_Sigarg
+#else
+#define Sigarg Int n
+#define Use_Sigarg n = n	/* shut up compiler warning */
+#endif

Cantera/ext/f2c_libs/sysdep1.h

@@ -0,0 +1,78 @@
+#ifndef SYSDEP_H_INCLUDED
+#define SYSDEP_H_INCLUDED
+#undef USE_LARGEFILE
+#ifndef NO_LONG_LONG
+
+#ifdef __sun__
+#define USE_LARGEFILE
+#define OFF_T off64_t
+// On some older solaris systems, it seems that OFF_T needed to 
+// be set to an int sometimes. It didn't cause crashes if you 
+// didn't. However, ld warnings would occur if the sys -lg2c
+// libs were loaded at the same time. 
+// see man pages for fseek and fseeko.
+// Can be debugged by finding out what off_t is set to in the
+// the standard compiler headings.
+//#define OFF_T int
+#endif
+
+#ifdef __linux__
+#define USE_LARGEFILE
+#define OFF_T __off64_t
+#endif
+
+#ifdef _AIX43
+#define _LARGE_FILES
+#define _LARGE_FILE_API
+#define USE_LARGEFILE
+#endif /*_AIX43*/
+
+#ifdef __hpux
+#define _FILE64
+#define _LARGEFILE64_SOURCE
+#define USE_LARGEFILE
+#endif /*__hpux*/
+
+#ifdef __sgi
+#define USE_LARGEFILE
+#endif /*__sgi*/
+
+#ifdef __FreeBSD__
+#define OFF_T off_t
+#define FSEEK fseeko
+#define FTELL ftello
+#endif
+
+#ifdef USE_LARGEFILE
+#ifndef OFF_T
+#define OFF_T off64_t
+#endif
+#ifndef _LARGEFILE_SOURCE
+#define _LARGEFILE_SOURCE
+#endif
+#ifndef  _LARGEFILE64_SOURCE
+#define _LARGEFILE64_SOURCE
+#endif
+#include <sys/types.h>
+#include <sys/stat.h>
+#define FOPEN fopen64
+#define FREOPEN freopen64
+#define FSEEK fseeko64
+#define FSTAT fstat64
+#define FTELL ftello64
+#define FTRUNCATE ftruncate64
+#define STAT stat64
+#define STAT_ST stat64
+#endif /*USE_LARGEFILE*/
+#endif /*NO_LONG_LONG*/
+
+#ifndef NON_UNIX_STDIO
+#ifndef USE_LARGEFILE
+#define _INCLUDE_POSIX_SOURCE	/* for HP-UX */
+#define _INCLUDE_XOPEN_SOURCE	/* for HP-UX */
+#include "sys/types.h"
+#include "sys/stat.h"
+#endif
+#endif
+
+#endif /*SYSDEP_H_INCLUDED*/

Cantera/src/Makefile.am

@@ -1,6 +1,6 @@
 # $Id: $
 
 # will need to add python and matlab 
-SUBDIRS = numerics base converters thermo transport oneD zeroD kinetics spectra equil
+SUBDIRS = base numerics converters thermo transport oneD zeroD kinetics spectra equil
 
 

Cantera/src/base/Makefile.am

@@ -30,6 +30,7 @@ __top_builddir__build_lib_libctbase_la_SOURCES      = $(cc_sources) $(h_sources)
 # header file accumulation -- only copy if file updated!
 all:
 	@echo copying headers $<
+	mkdir $(top_builddir)/build/include/
 	cp -u *.h $(top_builddir)/build/include/
 
 CLEANFILES = *.o