Remove unused Doxygen input files
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#-----------------------------------
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# PECOS - add any additional doxygen
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# dependencies here.
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#-----------------------------------
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PECOS_extra_dependencies = doc/doxygen/cantera.page \
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doc/doxygen/txt_common/about.page \
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doc/doxygen/txt_common/gpl.page \
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doc/doxygen/txt_common/acknowledgment.page
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## --------------------------------- ##
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## Format-independent Doxygen rules. ##
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## --------------------------------- ##
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if DX_COND_doc
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## ------------------------------- ##
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## Rules specific for HTML output. ##
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## ------------------------------- ##
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if DX_COND_html
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DX_CLEAN_HTML = @DX_DOCDIR@/html
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endif DX_COND_html
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## ------------------------------ ##
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## Rules specific for CHM output. ##
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## ------------------------------ ##
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if DX_COND_chm
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DX_CLEAN_CHM = @DX_DOCDIR@/chm
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if DX_COND_chi
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DX_CLEAN_CHI = @DX_DOCDIR@/@PACKAGE@.chi
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endif DX_COND_chi
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endif DX_COND_chm
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## ------------------------------ ##
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## Rules specific for MAN output. ##
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## ------------------------------ ##
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if DX_COND_man
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DX_CLEAN_MAN = @DX_DOCDIR@/man
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endif DX_COND_man
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## ------------------------------ ##
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## Rules specific for RTF output. ##
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## ------------------------------ ##
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if DX_COND_rtf
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DX_CLEAN_RTF = @DX_DOCDIR@/rtf
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endif DX_COND_rtf
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## ------------------------------ ##
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## Rules specific for XML output. ##
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## ------------------------------ ##
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if DX_COND_xml
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DX_CLEAN_XML = @DX_DOCDIR@/xml
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endif DX_COND_xml
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## ----------------------------- ##
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## Rules specific for PS output. ##
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## ----------------------------- ##
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if DX_COND_ps
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DX_CLEAN_PS = @DX_DOCDIR@/@PACKAGE@.ps
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DX_PS_GOAL = doxygen-ps
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doxygen-ps: @DX_DOCDIR@/@PACKAGE@.ps
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@DX_DOCDIR@/@PACKAGE@.ps: @DX_DOCDIR@/@PACKAGE@.tag
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cd @DX_DOCDIR@/latex; \
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rm -f *.aux *.toc *.idx *.ind *.ilg *.log *.out; \
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$(DX_LATEX) refman.tex; \
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$(MAKEINDEX_PATH) refman.idx; \
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$(DX_LATEX) refman.tex; \
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countdown=5; \
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while $(DX_EGREP) 'Rerun (LaTeX|to get cross-references right)' \
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refman.log > /dev/null 2>&1 \
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&& test $$countdown -gt 0; do \
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$(DX_LATEX) refman.tex; \
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countdown=`expr $$countdown - 1`; \
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done; \
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$(DX_DVIPS) -o ../@PACKAGE@.ps refman.dvi
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endif DX_COND_ps
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## ------------------------------ ##
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## Rules specific for PDF output. ##
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## ------------------------------ ##
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if DX_COND_pdf
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DX_CLEAN_PDF = @DX_DOCDIR@/@PACKAGE@.pdf
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DX_PDF_GOAL = doxygen-pdf
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doxygen-pdf: @DX_DOCDIR@/@PACKAGE@.pdf
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@DX_DOCDIR@/@PACKAGE@.pdf: @DX_DOCDIR@/@PACKAGE@.tag
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cd @DX_DOCDIR@/latex; \
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rm -f *.aux *.toc *.idx *.ind *.ilg *.log *.out; \
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$(DX_PDFLATEX) refman.tex; \
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$(DX_MAKEINDEX) refman.idx; \
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$(DX_PDFLATEX) refman.tex; \
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countdown=5; \
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while $(DX_EGREP) 'Rerun (LaTeX|to get cross-references right)' \
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refman.log > /dev/null 2>&1 \
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&& test $$countdown -gt 0; do \
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$(DX_PDFLATEX) refman.tex; \
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countdown=`expr $$countdown - 1`; \
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done; \
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mv refman.pdf ../@PACKAGE@.pdf
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endif DX_COND_pdf
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## ------------------------------------------------- ##
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## Rules specific for LaTeX (shared for PS and PDF). ##
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## ------------------------------------------------- ##
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if DX_COND_latex
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DX_CLEAN_LATEX = @DX_DOCDIR@/latex
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endif DX_COND_latex
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.PHONY: doxygen-run doxygen-doc $(DX_PS_GOAL) $(DX_PDF_GOAL)
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.INTERMEDIATE: doxygen-run $(DX_PS_GOAL) $(DX_PDF_GOAL)
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doxygen-run: @DX_DOCDIR@/@PACKAGE@.tag
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doxygen-doc: doxygen-run $(DX_PS_GOAL) $(DX_PDF_GOAL)
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doc: doxygen-doc
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docs: doxygen-doc
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@DX_DOCDIR@/@PACKAGE@.tag: $(DX_CONFIG) $(pkginclude_HEADERS) $(PECOS_extra_dependencies)
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rm -rf @DX_DOCDIR@
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$(DX_ENV) $(DX_DOXYGEN) $(srcdir)/$(DX_CONFIG)
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DX_CLEANFILES = \
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@DX_DOCDIR@/@PACKAGE@.tag \
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-r \
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$(DX_CLEAN_HTML) \
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$(DX_CLEAN_CHM) \
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$(DX_CLEAN_CHI) \
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$(DX_CLEAN_MAN) \
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$(DX_CLEAN_RTF) \
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$(DX_CLEAN_XML) \
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$(DX_CLEAN_PS) \
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$(DX_CLEAN_PDF) \
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$(DX_CLEAN_LATEX)
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# Additional PECOS dependencies
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endif DX_COND_doc
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@ -1,88 +0,0 @@
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/*! \mainpage The cantera Library
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<b>Version \version</b>, Build Date: \builddate
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Built by: \builduser on \buildhost
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<hr>
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\section overview Overview
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Thank you for your interest in cantera. To aid in usage, this manual is
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further divided into the following subsections:
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<ul>
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<li> \subpage model "Library Overview" </li>
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<li> \subpage install "Installation/Linkage" </li>
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<li> \link cantera.h C/C++ Interface \endlink </li>
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<li> \subpage apif "Fortran Interface" </li>
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<li> \link tut "Tutorial" </li>
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</ul>
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<!-- \subpage apiF Fortran API -->
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<!-- \subpage examples Examples -->
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\section bugs Reporting Bugs
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Bugs in the code and errors or omissions in the documentation can be
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reported to nick@ices.utexas.edu. Requests and contributions are
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welcome at the same e-mail address. All bug reports should include:
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<ul>
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<li>the version number of the library,
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<li>the hardware and operating system,
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<li>the compiler used, including version number and compilation options,
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<li>a description of the bug behavior, and ideally,
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<li>a short program which reproduces the bug.
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</ul>
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\section licence License
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Copyright (C) 2010 The PECOS Development Team
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\copydoc LicenseLGPL
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\section acknowledgements Acknowledgments
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\copydoc Acknowledgments
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\section pecos-center More Information About PECOS
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\copydoc About2
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*/
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/*! \page model Library Overview
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\copydoc LicenseLGPL
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This is a chemical kinetics library.
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<h2>Chemical Kinetics Overview</h2>
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This library is designed to simplify the process of accessing chemical kinetics.
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<h2>PECOS Center Background</h2>
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The Center for Predictive Engineering and COmputational Sciences (PECOS) is a DOE-funded Center
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of Excellence within the Institute for Computational Engineering and Sciences (ICES)
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at The University of Texas at Austin. PECOS is one of five such centers sponsored under
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the Predictive Science Academic Alliance Program (PSAAP) of the National Nuclear Security
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Administration’s Advanced Simulation and Computing Program.
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PECOS brings together an interdisciplinary, multi-university team with partners at the
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DOE National Labs and NASA. The goal of the PECOS Center is to develop the next generation
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of advanced computational methods for predictive simulation of multiscale, multiphysics phenomena,
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and to apply these methods to the analysis of vehicles reentering the atmosphere. In pursuing
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this research, PECOS is advancing the science and modeling of atmospheric reentry, and
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the science of predictive simulation.
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<h2> Developers </h2>
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Developers of the library include:
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Sylvain Plessis
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<a href="mailto:nick@ices.utexas.edu">Nicholas Malaya</a>
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Chris Simmons
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<h2> Citing </h2>
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Please add the following citation.
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\typeout{Document Style `masa'. Released 04 March 2011}
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\usepackage{pdflscape}
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\usepackage[authoryear]{natbib}
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%\usepackage[utf8x]{inputenc}
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\usepackage{amsmath}
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\usepackage{amsfonts}
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\usepackage{geometry}
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\newcommand{\D}{\partial}
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\newcommand{\Diff}[2] {\dfrac{\partial( #1)}{\partial #2}}
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\newcommand{\diff}[2] {\dfrac{\partial #1}{\partial #2}}
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\newcommand{\bv}[1]{\ensuremath{\mbox{\boldmath$ #1 $}}}
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\newcommand{\gv}[1]{\ensuremath{\mbox{\boldmath$ #1 $}}}
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\newcommand{\grad}[1]{\gv{\nabla} #1}
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\newcommand{\Rho}{\,\mathtt{Rho}}
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\newcommand{\PP}{\,\mathtt{P}}
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%\newcommand{\U}{\,\mathtt{U}}
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\newcommand{\V}{\,\mathtt{V}}
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\newcommand{\W}{\,\mathtt{W}}
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\newcommand{\Lo}{\,\mathcal{L}}
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@ -1,39 +0,0 @@
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/*! \page About
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\htmlonly
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<table border="0" width="660" >
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<tr><td width=95> <img src="circle-logo-small.png" /> </td>
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<td>
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The <a href="http://pecos.ices.utexas.edu">Center for
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Predictive Engineering and Computational Sciences</a> (PECOS)
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is one of five US centers sponsored under the Predictive
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Science Academic Alliance Program (PSAAP) of the National
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Nuclear Security Administration's Advanced Simulation and
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Computing Program. The PECOS center is housed within
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the <a href="http://www.ices.utexas.edu">Institute for
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Computational Engineering and Sciences (ICES) </a> at the
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<a href="http://www.utexas.edu">University of Texas at
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Austin</a>. For additional information or questions regarding
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the PECOS center, please contact <a href="mailto:info@pecos.ices.utexas.edu">info@pecos.ices.utexas.edu</a>.
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</td>
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</tr>
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</table>
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\endhtmlonly
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\latexonly
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\begin{tabular}{m{2.2cm} m{0.80\textwidth} }
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\includegraphics[width=2cm]{../../doxygen/fig_common/circle-logo.pdf} &
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The \href{http://pecos.ices.utexas.edu}{Center for Predictive
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Engineering and Computational Sciences} (PECOS) is one of five US
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centers sponsored under the Predictive Science Academic Alliance
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Program (PSAAP) of the National Nuclear Security Administration's
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Advanced Simulation and Computing Program. The PECOS center is housed
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within the \href{http://www.ices.utexas.edu}{Institute for
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Computational Engineering and Sciences} (ICES) at the
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\href{http://www.utexas.edu"}{University of Texas at Austin}. For
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additional information or questions regarding the PECOS center, please
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contact info@pecos.ices.utexas.edu.
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\end{tabular}
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\endlatexonly
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*/
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@ -1,39 +0,0 @@
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/*! \page About2
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\htmlonly
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<table border="0" width="660" >
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<tr><td width=95> <img src="circle-logo-small.png" /> </td>
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<td>
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The <a href="http://pecos.ices.utexas.edu">Center for
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Predictive Engineering and Computational Sciences</a> (PECOS)
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is one of five US centers sponsored under the Predictive
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Science Academic Alliance Program (PSAAP) of the National
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Nuclear Security Administration's Advanced Simulation and
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Computing Program. The PECOS center is housed within
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the <a href="http://www.ices.utexas.edu">Institute for
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Computational Engineering and Sciences (ICES) </a> at the
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<a href="http://www.utexas.edu">University of Texas at
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Austin</a>. For additional information or questions regarding
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the PECOS center, please contact <a href="mailto:info@pecos.ices.utexas.edu">info@pecos.ices.utexas.edu</a>.
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</td>
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</tr>
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</table>
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\endhtmlonly
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\latexonly
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\begin{tabular}{m{2.2cm} m{0.80\textwidth} }
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\includegraphics[width=2cm]{@abs_top_srcdir@/doxygen/fig_common/circle-logo.pdf} &
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The \href{http://pecos.ices.utexas.edu}{Center for Predictive
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Engineering and Computational Sciences} (PECOS) is one of five US
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centers sponsored under the Predictive Science Academic Alliance
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Program (PSAAP) of the National Nuclear Security Administration's
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Advanced Simulation and Computing Program. The PECOS center is housed
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within the \href{http://www.ices.utexas.edu}{Institute for
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Computational Engineering and Sciences} (ICES) at the
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\href{http://www.utexas.edu"}{University of Texas at Austin}. For
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additional information or questions regarding the PECOS center, please
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contact info@pecos.ices.utexas.edu.
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\end{tabular}
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\endlatexonly
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*/
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@ -1,7 +0,0 @@
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/*! \page Acknowledgments
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This material is based in part upon work supported by the Department
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of Energy National Nuclear Security Administration under Award
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Number \e DE-FC52-08NA28615.
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*/
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@ -1,8 +0,0 @@
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<hr size="1"/><address style="text-align: right;"><small>
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Generated on $datetime for $projectname
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by <a href="http://www.doxygen.org/index.html">
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<em>doxygen</em></a>
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$doxygenversion</small></address>
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</body>
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</html>
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@ -1,13 +0,0 @@
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/*! \page License
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<br>
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This program is free software; you can redistribute it and/or modify
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it under the terms of the Version 2 GNU General Public License as published by
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the Free Software Foundation.<br>
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<br>
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This program is distributed in the hope that it will be useful, but
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WITHOUT ANY WARRANTY; without even the implied warranty of
|
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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<a href="http://www.gnu.org/licenses/gpl-2.0.html">GNU General Public License</a>
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for more details.
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*/
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@ -1,13 +0,0 @@
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/*! \page LicenseLGPL
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This library is free software; you can redistribute it and/or
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modify it under the terms of the Version 2.1 GNU Lesser General
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||||
Public License as published by the Free Software Foundation.
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This library is distributed in the hope that it will be useful, but
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WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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<a href="http://www.gnu.org/licenses/lgpl-2.1.txt">GNU Lesser General
|
||||
Public License </a> for more details.
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*/
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@ -1,11 +0,0 @@
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/*! \page NOOP
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Note: This page does not contain any useful documentation (sorry). It
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is used to include graphics to trick doxygen into copying them for us.
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We apologize for the hackery in advance.
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\image html circle-logo-small.png
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\b 42.
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*/
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