From 2528df0f75ced30fdcc429b55663001182b1b799 Mon Sep 17 00:00:00 2001 From: Ray Speth Date: Sun, 12 Feb 2012 02:27:14 +0000 Subject: [PATCH] Reorganized source tree structure These changes make it unnecessary to copy header files around during the build process, which tends to confuse IDEs and debuggers. The headers which comprise Cantera's external C++ interface are now in the 'include' directory. All of the samples and demos are now in the 'samples' subdirectory. --- Cantera/Makefile.am | 4 - Cantera/README.txt | 11 - Cantera/cxx/Makefile.am | 1 - Cantera/cxx/src/Makefile.am | 28 -- Cantera/user/Makefile.am | 17 - apps/README.txt | 8 - {docs => doc}/Makefile.am | 0 {docs => doc/doxygen}/Cantera.cfg.in | 0 {docs/doxyinput => doc/doxygen}/Cantera.txt | 0 {docs => doc/doxygen}/aminclude.am | 0 {docs/html => doc/doxygen}/banner4.jpg | Bin {docs/doxyinput => doc/doxygen}/bindings.txt | 0 {docs/doxyinput => doc/doxygen}/build.txt | 0 .../doxyinput => doc/doxygen}/buildcygwin.txt | 0 .../doxyinput => doc/doxygen}/configuring.txt | 0 {docs/doxyinput => doc/doxygen}/ctnew.txt | 0 .../doxyinput => doc/doxygen}/cxx-headers.txt | 0 {docs/doxyinput => doc/doxygen}/cxx-setup.txt | 0 {docs/doxyinput => doc/doxygen}/demo.cpp | 0 {docs/doxyinput => doc/doxygen}/demo1.cpp | 0 {docs/doxyinput => doc/doxygen}/demo1a.cpp | 0 {docs/doxyinput => doc/doxygen}/demoequil.cpp | 0 {docs/doxyinput => doc/doxygen}/edemo.cpp | 0 {docs/doxyinput => doc/doxygen}/equildemo.txt | 0 {docs/doxyinput => doc/doxygen}/ex1.cpp | 0 {docs/doxyinput => doc/doxygen}/except.cpp | 0 .../doxyinput => doc/doxygen}/exceptions.txt | 0 .../doxyinput => doc/doxygen}/initthermo.txt | 0 {docs/doxyinput => doc/doxygen}/introcxx.txt | 0 {docs/doxyinput => doc/doxygen}/languages.txt | 0 {docs/doxyinput => doc/doxygen}/matlab.txt | 0 {docs/doxyinput => doc/doxygen}/numarray.txt | 0 {docs/doxyinput => doc/doxygen}/thermo.txt | 0 .../doxyinput => doc/doxygen}/thermodemo.cpp | 0 .../doxyinput => doc/doxygen}/thermodemo.txt | 0 {docs/doxyinput => doc/doxygen}/transport.txt | 0 {docs/doxyinput => doc/doxygen}/winbuild.txt | 0 {docs => doc}/python/makedoc | 0 {docs => doc}/python/mkmkdoc.py | 0 {Cantera/ext => ext}/Makefile.am | 0 .../cxx/include => include/cantera}/Cantera.h | 0 .../cxx/include => include/cantera}/Edge.h | 0 .../cxx/include => include/cantera}/GRI30.h | 0 .../include => include/cantera}/IdealGasMix.h | 0 .../cantera}/IncompressibleSolid.h | 0 .../include => include/cantera}/Interface.h | 0 .../cxx/include => include/cantera}/Metal.h | 0 .../include => include/cantera}/PureFluid.h | 0 {Cantera/src => include/cantera}/base/Array.h | 0 .../cantera}/base/FactoryBase.h | 0 .../src => include/cantera}/base/PrintCtrl.h | 0 .../src => include/cantera}/base/XML_Writer.h | 0 .../src => include/cantera}/base/clockWC.h | 0 .../src => include/cantera}/base/config.h.in | 0 .../src => include/cantera}/base/ct_defs.h | 0 .../cantera}/base/ctexceptions.h | 0 {Cantera/src => include/cantera}/base/ctml.h | 0 .../src => include/cantera}/base/global.h | 0 .../src => include/cantera}/base/logger.h | 0 .../src => include/cantera}/base/mdp_allo.h | 0 .../cantera}/base/stringUtils.h | 0 .../src => include/cantera}/base/utilities.h | 0 .../cantera}/base/vec_functions.h | 0 {Cantera/src => include/cantera}/base/xml.h | 0 .../cantera}/electrolyteThermo.h | 0 .../src => include/cantera}/equil/ChemEquil.h | 0 .../cantera}/equil/MultiPhase.h | 0 .../cantera}/equil/MultiPhaseEquil.h | 0 .../src => include/cantera}/equil/equil.h | 0 .../cantera}/equil/vcs_MultiPhaseEquil.h | 0 .../src => include/cantera}/equil/vcs_defs.h | 0 .../include => include/cantera}/equilibrium.h | 0 .../include => include/cantera}/integrators.h | 0 .../include => include/cantera}/kinetics.h | 0 .../cantera}/kinetics/AqueousKinetics.h | 0 .../cantera}/kinetics/EdgeKinetics.h | 0 .../cantera}/kinetics/Enhanced3BConc.h | 0 .../cantera}/kinetics/FalloffFactory.h | 0 .../cantera}/kinetics/FalloffMgr.h | 0 .../cantera}/kinetics/GRI_30_Kinetics.h | 0 .../cantera}/kinetics/GasKinetics.h | 0 .../src => include/cantera}/kinetics/Group.h | 0 .../cantera}/kinetics/InterfaceKinetics.h | 0 .../cantera}/kinetics/Kinetics.h | 0 .../cantera}/kinetics/KineticsFactory.h | 0 .../cantera}/kinetics/RateCoeffMgr.h | 0 .../cantera}/kinetics/ReactionPath.h | 0 .../cantera}/kinetics/ReactionStoichMgr.h | 0 .../cantera}/kinetics/RxnRates.h | 0 .../cantera}/kinetics/ThirdBodyMgr.h | 0 .../cantera}/kinetics/importKinetics.h | 0 .../cantera}/kinetics/reaction_defs.h | 0 .../include => include/cantera}/numerics.h | 0 .../cantera}/numerics/ArrayViewer.h | 0 .../cantera}/numerics/BandMatrix.h | 0 .../cantera}/numerics/DAE_Solver.h | 0 .../cantera}/numerics/DenseMatrix.h | 0 .../src => include/cantera}/numerics/Func1.h | 0 .../cantera}/numerics/FuncEval.h | 0 .../cantera}/numerics/GeneralMatrix.h | 0 .../cantera}/numerics/IDA_Solver.h | 0 .../cantera}/numerics/Integrator.h | 0 .../cantera}/numerics/NonlinearSolver.h | 0 .../cantera}/numerics/ResidEval.h | 0 .../cantera}/numerics/ResidJacEval.h | 0 .../cantera}/numerics/RootFind.h | 0 .../cantera}/numerics/SquareMatrix.h | 0 .../cantera}/numerics/ctlapack.h | 0 .../src => include/cantera}/numerics/funcs.h | 0 .../cantera}/numerics/polyfit.h | 0 .../cantera}/numerics/solveProb.h | 0 .../src => include/cantera}/oneD/Domain1D.h | 0 .../src => include/cantera}/oneD/Inlet1D.h | 0 .../src => include/cantera}/oneD/MultiJac.h | 0 .../cantera}/oneD/MultiNewton.h | 0 .../src => include/cantera}/oneD/OneDim.h | 0 {Cantera/src => include/cantera}/oneD/Sim1D.h | 0 .../src => include/cantera}/oneD/StFlow.h | 0 .../src => include/cantera}/oneD/Surf1D.h | 0 .../src => include/cantera}/oneD/refine.h | 0 .../cxx/include => include/cantera}/onedim.h | 1 + .../include => include/cantera}/radiation.h | 0 .../cantera}/reactionpaths.h | 0 .../cxx/include => include/cantera}/solvers.h | 0 .../cxx/include => include/cantera}/spectra.h | 0 .../cantera}/spectra/LineBroadener.h | 0 .../src => include/cantera}/spectra/rotor.h | 0 .../cxx/include => include/cantera}/surface.h | 0 .../cxx/include => include/cantera}/thermo.h | 0 .../cantera}/thermo/AdsorbateThermo.h | 0 .../cantera}/thermo/ConstDensityThermo.h | 0 .../cantera}/thermo/Constituents.h | 0 .../src => include/cantera}/thermo/Crystal.h | 0 .../cantera}/thermo/DebyeHuckel.h | 0 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include/cantera}/thermo/PDSS.h | 0 .../cantera}/thermo/PDSS_ConstVol.h | 0 .../cantera}/thermo/PDSS_HKFT.h | 0 .../cantera}/thermo/PDSS_IdealGas.h | 0 .../cantera}/thermo/PDSS_IonsFromNeutral.h | 0 .../cantera}/thermo/PDSS_SSVol.h | 0 .../cantera}/thermo/PDSS_Water.h | 0 .../src => include/cantera}/thermo/Phase.h | 0 .../cantera}/thermo/PhaseCombo_Interaction.h | 0 .../cantera}/thermo/PseudoBinaryVPSSTP.h | 0 .../cantera}/thermo/PureFluidPhase.h | 0 .../cantera}/thermo/RedlichKwongMFTP.h | 0 .../cantera}/thermo/SemiconductorPhase.h | 0 .../cantera}/thermo/SimpleThermo.h | 0 .../cantera}/thermo/SingleSpeciesTP.h | 0 .../cantera}/thermo/SpeciesThermo.h | 0 .../cantera}/thermo/SpeciesThermoFactory.h | 0 .../cantera}/thermo/SpeciesThermoInterpType.h | 0 .../cantera}/thermo/SpeciesThermoMgr.h | 0 .../src => include/cantera}/thermo/State.h | 0 .../cantera}/thermo/StoichSubstance.h | 0 .../cantera}/thermo/StoichSubstanceSSTP.h | 0 .../cantera}/thermo/SurfPhase.h | 0 .../cantera}/thermo/ThermoFactory.h | 0 .../cantera}/thermo/ThermoPhase.h | 0 .../src => include/cantera}/thermo/VPSSMgr.h | 0 .../cantera}/thermo/VPSSMgr_ConstVol.h | 0 .../cantera}/thermo/VPSSMgr_General.h | 0 .../cantera}/thermo/VPSSMgr_IdealGas.h | 0 .../cantera}/thermo/VPSSMgr_Water_ConstVol.h | 0 .../cantera}/thermo/VPSSMgr_Water_HKFT.h | 0 .../cantera}/thermo/VPSSMgr_types.h | 0 .../cantera}/thermo/VPStandardStateTP.h | 0 .../cantera}/thermo/WaterProps.h | 0 .../cantera}/thermo/WaterPropsIAPWS.h | 0 .../cantera}/thermo/WaterPropsIAPWSphi.h | 0 .../cantera}/thermo/WaterSSTP.h | 0 .../cantera}/thermo/electrolytes.h | 0 .../src => include/cantera}/thermo/mix_defs.h | 0 .../cantera}/thermo/speciesThermoTypes.h | 0 {ext => include/cantera}/tpx/Sub.h | 0 {ext => include/cantera}/tpx/utils.h | 0 .../include => include/cantera}/transport.h | 0 .../cantera}/transport/AqueousTransport.h | 0 .../cantera}/transport/DustyGasTransport.h | 0 .../cantera}/transport/LTPspecies.h | 0 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rename {Cantera/src => src}/converters/NASA9Parser.cpp (100%) rename {Cantera/src => src}/converters/Reaction.cpp (100%) rename {Cantera/src => src}/converters/Reaction.h (100%) rename {Cantera/src => src}/converters/RxnSpecies.h (100%) rename {Cantera/src => src}/converters/Species.cpp (100%) rename {Cantera/src => src}/converters/Species.h (100%) rename {Cantera/src => src}/converters/atomicWeightDB.cpp (100%) rename {Cantera/src => src}/converters/ck2ct.cpp (100%) rename {Cantera/src => src}/converters/ck2ct.h (100%) rename {Cantera/src => src}/converters/ckr_defs.h (100%) rename {Cantera/src => src}/converters/ckr_utils.cpp (100%) rename {Cantera/src => src}/converters/ckr_utils.h (100%) rename {Cantera/src => src}/converters/newThermoReading.txt (100%) rename {Cantera/src => src}/converters/thermoFunctions.cpp (100%) rename {Cantera/src => src}/converters/thermoFunctions.h (100%) rename {Cantera/src => src}/converters/writelog.cpp (100%) rename {Cantera/src => src}/converters/writelog.h (100%) rename {Cantera => src}/cxx/SConscript (100%) rename {Cantera/src => src}/equil/BasisOptimize.cpp (100%) rename {Cantera/src => src}/equil/ChemEquil.cpp (100%) rename {Cantera/src => src}/equil/Makefile.am (100%) rename {Cantera/src => src}/equil/MultiPhase.cpp (100%) rename {Cantera/src => src}/equil/MultiPhaseEquil.cpp (100%) rename {Cantera/src => src}/equil/PropertyCalculator.h (100%) rename {Cantera/src => src}/equil/equilibrate.cpp (100%) rename {Cantera/src => src}/equil/vcs_DoubleStarStar.cpp (100%) rename {Cantera/src => src}/equil/vcs_DoubleStarStar.h (100%) rename {Cantera/src => src}/equil/vcs_Exception.cpp (100%) rename {Cantera/src => src}/equil/vcs_Exception.h (100%) rename {Cantera/src => src}/equil/vcs_Gibbs.cpp (100%) rename {Cantera/src => src}/equil/vcs_IntStarStar.cpp (100%) rename {Cantera/src => src}/equil/vcs_IntStarStar.h (100%) rename {Cantera/src => src}/equil/vcs_MultiPhaseEquil.cpp (100%) rename {Cantera/src => src}/equil/vcs_SpeciesProperties.cpp (100%) rename {Cantera/src => src}/equil/vcs_SpeciesProperties.h (100%) rename {Cantera/src => src}/equil/vcs_TP.cpp (100%) rename {Cantera/src => src}/equil/vcs_VolPhase.cpp (100%) rename {Cantera/src => src}/equil/vcs_VolPhase.h (100%) rename {Cantera/src => src}/equil/vcs_dbocls.c (100%) rename {Cantera/src => src}/equil/vcs_dbols.c (100%) rename {Cantera/src => src}/equil/vcs_dbolsm.c (100%) rename {Cantera/src => src}/equil/vcs_dmout.c (100%) rename {Cantera/src => src}/equil/vcs_dvout.c (100%) rename {Cantera/src => src}/equil/vcs_elem.cpp (100%) rename {Cantera/src => src}/equil/vcs_elem_rearrange.cpp (100%) rename {Cantera/src => src}/equil/vcs_equilibrate.cpp (100%) rename {Cantera/src => src}/equil/vcs_inest.cpp (100%) rename {Cantera/src => src}/equil/vcs_internal.h (100%) rename {Cantera/src => src}/equil/vcs_ivout.c (100%) rename {Cantera/src => src}/equil/vcs_nondim.cpp (100%) rename {Cantera/src => src}/equil/vcs_phaseStability.cpp (100%) rename {Cantera/src => src}/equil/vcs_prep.cpp (100%) rename {Cantera/src => src}/equil/vcs_prob.cpp (100%) rename {Cantera/src => src}/equil/vcs_prob.h (100%) rename {Cantera/src => src}/equil/vcs_rearrange.cpp (100%) rename {Cantera/src => src}/equil/vcs_report.cpp (100%) rename {Cantera/src => src}/equil/vcs_root1d.cpp (100%) rename {Cantera/src => src}/equil/vcs_rxnadj.cpp (100%) rename {Cantera/src => src}/equil/vcs_setMolesLinProg.cpp (100%) rename {Cantera/src => src}/equil/vcs_solve.cpp (100%) rename {Cantera/src => src}/equil/vcs_solve.h (100%) rename {Cantera/src => src}/equil/vcs_solve_TP.cpp (100%) rename {Cantera/src => src}/equil/vcs_solve_phaseStability.cpp (100%) rename {Cantera/src => src}/equil/vcs_species_thermo.cpp (100%) rename {Cantera/src => src}/equil/vcs_species_thermo.h (100%) rename {Cantera/src => src}/equil/vcs_util.cpp (100%) rename {Cantera/src => src}/equil/vcs_xerror.c (100%) rename {Cantera => src}/fortran/SConscript (100%) rename {Cantera/fortran/src => src/fortran}/cantera.f90 (100%) rename {Cantera/fortran/src => src/fortran}/cantera_funcs.f90 (100%) rename {Cantera/fortran/src => src/fortran}/cantera_iface.f90 (100%) rename {Cantera/fortran/src => src/fortran}/cantera_kinetics.f90 (100%) rename {Cantera/fortran/src => src/fortran}/cantera_thermo.f90 (100%) rename {Cantera/fortran/src => src/fortran}/cantera_transport.f90 (100%) rename {Cantera/fortran/src => src/fortran}/cantera_xml.f90 (100%) rename {Cantera/fortran/src => src/fortran}/fct.cpp (100%) rename {Cantera/fortran/src => src/fortran}/fct_interface.f90 (100%) rename {Cantera/fortran/src => src/fortran}/fctxml.cpp (100%) rename {Cantera/fortran/src => src/fortran}/fctxml_interface.f90 (100%) rename {Cantera/fortran/src => src/fortran}/flib_defs.h (100%) rename {Cantera/fortran/src => src/fortran}/genf.py (100%) rename {Cantera/fortran/src => src/fortran}/makect.py (100%) rename {Cantera/src => src}/kinetics/AqueousKinetics.cpp (100%) rename {Cantera/src => src}/kinetics/FalloffFactory.cpp (100%) rename {Cantera/src => src}/kinetics/GRI_30_Kinetics.cpp (100%) rename {Cantera/src => src}/kinetics/GasKinetics.cpp (100%) rename {Cantera/src => src}/kinetics/Group.cpp (100%) rename {Cantera/src => src}/kinetics/ImplicitSurfChem.cpp (100%) rename {Cantera/src => src}/kinetics/ImplicitSurfChem.h (100%) rename {Cantera/src => src}/kinetics/InterfaceKinetics.cpp (100%) rename {Cantera/src => src}/kinetics/Kinetics.cpp (100%) rename {Cantera/src => src}/kinetics/KineticsFactory.cpp (100%) rename {Cantera/src => src}/kinetics/Makefile.am (100%) rename {Cantera/src => src}/kinetics/ReactionData.h (100%) rename {Cantera/src => src}/kinetics/ReactionPath.cpp (100%) rename {Cantera/src => src}/kinetics/ReactionStoichMgr.cpp (100%) rename {Cantera/src => src}/kinetics/StoichManager.h (100%) rename {Cantera/src => src}/kinetics/importKinetics.cpp (100%) rename {Cantera/src => src}/kinetics/solveSP.cpp (100%) rename {Cantera/src => src}/kinetics/solveSP.h (100%) rename {Cantera => src}/matlab/SConscript (100%) rename {Cantera/matlab/src => src/matlab}/ctfunctions.cpp (100%) rename {Cantera/matlab/src => src/matlab}/ctmatutils.h (100%) rename {Cantera/matlab/src => src/matlab}/ctmethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/flowdevicemethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/funcmethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/kineticsmethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/mixturemethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/mllogger.h (100%) rename {Cantera/matlab/src => src/matlab}/onedimmethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/phasemethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/reactormethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/reactornetmethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/surfmethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/thermomethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/transportmethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/wallmethods.cpp (100%) rename {Cantera/matlab/src => src/matlab}/xmlmethods.cpp (100%) rename {Cantera/src => src}/numerics/BEulerInt.cpp (100%) rename {Cantera/src => src}/numerics/BEulerInt.h (100%) rename {Cantera/src => src}/numerics/BandMatrix.cpp (100%) rename {Cantera/src => src}/numerics/CVodeInt.cpp (100%) rename {Cantera/src => src}/numerics/CVodeInt.h (100%) rename {Cantera/src => src}/numerics/CVodesIntegrator.cpp (100%) rename {Cantera/src => src}/numerics/CVodesIntegrator.h (100%) rename {Cantera/src => src}/numerics/DenseMatrix.cpp (100%) rename {Cantera/src => src}/numerics/Func1.cpp (100%) rename {Cantera/src => src}/numerics/GeneralMatrix.cpp (100%) rename {Cantera/src => src}/numerics/IDA_Solver.cpp (100%) rename {Cantera/src => src}/numerics/Makefile.am (100%) rename {Cantera/src => src}/numerics/NonlinearSolver.cpp (100%) rename {Cantera/src => src}/numerics/ODE_integrators.cpp (100%) rename {Cantera/src => src}/numerics/ResidJacEval.cpp (100%) rename {Cantera/src => src}/numerics/RootFind.cpp (100%) rename {Cantera/src => src}/numerics/SquareMatrix.cpp (100%) rename {Cantera/src => src}/numerics/funcs.cpp (100%) rename {Cantera/src => src}/numerics/lapack.h (100%) rename {Cantera/src => src}/numerics/solveProb.cpp (100%) rename {Cantera/src => src}/oneD/Domain1D.cpp (100%) rename {Cantera/src => src}/oneD/Makefile.am (100%) rename {Cantera/src => src}/oneD/MultiJac.cpp (100%) rename {Cantera/src => src}/oneD/MultiNewton.cpp (100%) rename {Cantera/src => src}/oneD/OneDim.cpp (100%) rename {Cantera/src => src}/oneD/Resid1D.h (100%) rename {Cantera/src => src}/oneD/Sim1D.cpp (100%) rename {Cantera/src => src}/oneD/StFlow.cpp (100%) rename {Cantera/src => src}/oneD/boundaries1D.cpp (100%) rename {Cantera/src => src}/oneD/newton_utils.cpp (100%) rename {Cantera/src => src}/oneD/refine.cpp (100%) rename {Cantera/python/src => src/python}/ctbndry_methods.cpp (100%) rename {Cantera/python/src => src/python}/ctflow_methods.cpp (100%) rename {Cantera/python/src => src/python}/ctfunc_methods.cpp (100%) rename {Cantera/python/src => src/python}/ctfuncs.cpp (100%) rename {Cantera/python/src => src/python}/ctkinetics_methods.cpp (100%) rename {Cantera/python/src => src/python}/ctmultiphase_methods.cpp (100%) rename {Cantera/python/src => src/python}/ctonedim_methods.cpp (100%) rename {Cantera/python/src => src/python}/ctphase_methods.cpp (100%) rename {Cantera/python/src => src/python}/ctreactor_methods.cpp (100%) rename {Cantera/python/src => src/python}/ctrpath_methods.cpp (100%) rename {Cantera/python/src => src/python}/ctsurf_methods.cpp (100%) rename {Cantera/python/src => src/python}/ctthermo_methods.cpp (100%) rename {Cantera/python/src => src/python}/cttransport_methods.cpp (100%) rename {Cantera/python/src => src/python}/ctxml_methods.cpp (100%) rename {Cantera/python/src => src/python}/methods.h (100%) rename {Cantera/python/src => src/python}/pycantera.cpp (100%) rename {Cantera/python/src => src/python}/pylogger.h (100%) rename {Cantera/python/src => src/python}/pyutils.h (100%) rename {Cantera/python/src => src/python}/spam.c (100%) rename {Cantera/src => src}/spectra/DiatomicMolecule.h (100%) rename {Cantera/src => src}/spectra/LineBroadener.cpp (100%) rename {Cantera/src => src}/spectra/Makefile.am (100%) rename {Cantera/src => src}/spectra/Nuclei.h (100%) rename {Cantera/src => src}/spectra/rotor.cpp (100%) rename {Cantera/src => src}/spectra/spectralUtilities.cpp (100%) rename {Cantera/src => src}/spectra/spectralUtilities.h (100%) rename {Cantera/src => src}/thermo/ConstCpPoly.cpp (100%) rename {Cantera/src => src}/thermo/ConstCpPoly.h (100%) rename {Cantera/src => src}/thermo/ConstDensityThermo.cpp (100%) rename {Cantera/src => src}/thermo/Constituents.cpp (100%) rename {Cantera/src => src}/thermo/DebyeHuckel.cpp (100%) rename {Cantera/src => src}/thermo/Elements.cpp (100%) rename {Cantera/src => src}/thermo/FixedChemPotSSTP.cpp (100%) rename {Cantera/src => src}/thermo/GeneralSpeciesThermo.cpp (100%) rename {Cantera/src => src}/thermo/GibbsExcessVPSSTP.cpp (100%) rename {Cantera/src => src}/thermo/HMWSoln.cpp (100%) rename {Cantera/src => src}/thermo/HMWSoln_input.cpp (100%) rename {Cantera/src => src}/thermo/IdealGasPhase.cpp (100%) rename {Cantera/src => src}/thermo/IdealMolalSoln.cpp (100%) rename {Cantera/src => src}/thermo/IdealSolidSolnPhase.cpp (100%) rename {Cantera/src => src}/thermo/IdealSolnGasVPSS.cpp (100%) rename {Cantera/src => src}/thermo/IonsFromNeutralVPSSTP.cpp (100%) rename {Cantera/src => src}/thermo/LatticePhase.cpp (100%) rename {Cantera/src => src}/thermo/LatticeSolidPhase.cpp (100%) rename {Cantera/src => src}/thermo/Makefile.am (100%) rename {Cantera/src => src}/thermo/MargulesVPSSTP.cpp (100%) rename {Cantera/src => src}/thermo/MetalSHEelectrons.cpp (100%) rename {Cantera/src => src}/thermo/MineralEQ3.cpp (100%) rename {Cantera/src => src}/thermo/MixedSolventElectrolyte.cpp (100%) rename {Cantera/src => src}/thermo/MixtureFugacityTP.cpp (100%) rename {Cantera/src => src}/thermo/MolalityVPSSTP.cpp (100%) rename {Cantera/src => src}/thermo/MolarityIonicVPSSTP.cpp (100%) rename {Cantera/src => src}/thermo/Mu0Poly.cpp (100%) rename {Cantera/src => src}/thermo/Mu0Poly.h (100%) rename {Cantera/src => src}/thermo/Nasa9Poly1.cpp (100%) rename {Cantera/src => src}/thermo/Nasa9PolyMultiTempRegion.cpp (100%) rename {Cantera/src => src}/thermo/Nasa9PolyMultiTempRegion.h (100%) rename {Cantera/src => src}/thermo/NasaPoly2.h (100%) rename {Cantera/src => src}/thermo/NasaThermo.h (100%) rename {Cantera/src => src}/thermo/PDSS.cpp (100%) rename {Cantera/src => src}/thermo/PDSS_ConstVol.cpp (100%) rename {Cantera/src => src}/thermo/PDSS_HKFT.cpp (100%) rename {Cantera/src => src}/thermo/PDSS_IdealGas.cpp (100%) rename {Cantera/src => src}/thermo/PDSS_IonsFromNeutral.cpp (100%) rename {Cantera/src => src}/thermo/PDSS_SSVol.cpp (100%) rename {Cantera/src => src}/thermo/PDSS_Water.cpp (100%) rename {Cantera/src => src}/thermo/Phase.cpp (100%) rename {Cantera/src => src}/thermo/PhaseCombo_Interaction.cpp (100%) rename {Cantera/src => src}/thermo/PseudoBinaryVPSSTP.cpp (100%) rename {Cantera/src => src}/thermo/PureFluidPhase.cpp (100%) rename {Cantera/src => src}/thermo/RedlichKisterVPSSTP.cpp (100%) rename {Cantera/src => src}/thermo/RedlichKisterVPSSTP.h (100%) rename {Cantera/src => src}/thermo/RedlichKwongMFTP.cpp (100%) rename {Cantera/src => src}/thermo/SemiconductorPhase.cpp (100%) rename {Cantera/src => src}/thermo/ShomatePoly.h (100%) rename {Cantera/src => src}/thermo/ShomateThermo.h (100%) rename {Cantera/src => src}/thermo/SingleSpeciesTP.cpp (100%) rename {Cantera/src => src}/thermo/SpeciesThermoFactory.cpp (100%) rename {Cantera/src => src}/thermo/SpeciesThermoInterpType.cpp (100%) rename {Cantera/src => src}/thermo/State.cpp (100%) rename {Cantera/src => src}/thermo/StoichSubstance.cpp (100%) rename {Cantera/src => src}/thermo/StoichSubstanceSSTP.cpp (100%) rename {Cantera/src => src}/thermo/SurfPhase.cpp (100%) rename {Cantera/src => src}/thermo/ThermoFactory.cpp (100%) rename {Cantera/src => src}/thermo/ThermoPhase.cpp (100%) rename {Cantera/src => src}/thermo/VPSSMgr.cpp (100%) rename {Cantera/src => src}/thermo/VPSSMgrFactory.cpp (100%) rename {Cantera/src => src}/thermo/VPSSMgrFactory.h (100%) rename {Cantera/src => src}/thermo/VPSSMgr_ConstVol.cpp (100%) rename {Cantera/src => src}/thermo/VPSSMgr_General.cpp (100%) rename {Cantera/src => src}/thermo/VPSSMgr_IdealGas.cpp (100%) rename {Cantera/src => src}/thermo/VPSSMgr_Water_ConstVol.cpp (100%) rename {Cantera/src => src}/thermo/VPSSMgr_Water_HKFT.cpp (100%) rename {Cantera/src => src}/thermo/VPStandardStateTP.cpp (100%) rename {Cantera/src => src}/thermo/WaterProps.cpp (100%) rename {Cantera/src => src}/thermo/WaterPropsIAPWS.cpp (100%) rename {Cantera/src => src}/thermo/WaterPropsIAPWSphi.cpp (100%) rename {Cantera/src => src}/thermo/WaterSSTP.cpp (100%) rename {Cantera/src => src}/thermo/phasereport.cpp (100%) rename {ext => src}/tpx/CarbonDioxide.cpp (100%) rename {ext => src}/tpx/CarbonDioxide.h (100%) rename {ext => src}/tpx/HFC134a.cpp (100%) rename {ext => src}/tpx/HFC134a.h (100%) rename {ext => src}/tpx/Heptane.cpp (100%) rename {ext => src}/tpx/Heptane.h (100%) rename {ext => src}/tpx/Hydrogen.cpp (100%) rename {ext => src}/tpx/Hydrogen.h (100%) rename {ext => src}/tpx/Makefile.am (100%) rename {ext => src}/tpx/Methane.cpp (100%) rename {ext => src}/tpx/Methane.h (100%) rename {ext => src}/tpx/Nitrogen.cpp (100%) rename {ext => src}/tpx/Nitrogen.h (100%) rename {ext => src}/tpx/Oxygen.cpp (100%) rename {ext => src}/tpx/Oxygen.h (100%) rename {ext => src}/tpx/RedlichKwong.cpp (100%) rename {ext => src}/tpx/RedlichKwong.h (100%) rename {ext => src}/tpx/Sub.cpp (100%) rename {ext => src}/tpx/Water.cpp (100%) rename {ext => src}/tpx/Water.h (100%) rename {ext => src}/tpx/lk.cpp (100%) rename {ext => src}/tpx/lk.h (100%) rename {ext => src}/tpx/mix.h (100%) rename {ext => src}/tpx/subs.h (100%) rename {ext => src}/tpx/utils.cpp (100%) rename {Cantera/src => src}/transport/AqueousTransport.cpp (100%) rename {Cantera/src => src}/transport/DustyGasTransport.cpp (100%) rename {Cantera/src => src}/transport/FtnTransport.h (100%) rename {Cantera/src => src}/transport/LTPspecies.cpp (100%) rename {Cantera/src => src}/transport/L_matrix.h (100%) rename {Cantera/src => src}/transport/LiquidTranInteraction.cpp (100%) rename {Cantera/src => src}/transport/LiquidTransport.cpp (100%) rename {Cantera/src => src}/transport/LiquidTransportData.cpp (100%) rename {Cantera/src => src}/transport/LiquidTransportParams.cpp (100%) rename {Cantera/src => src}/transport/MMCollisionInt.cpp (100%) rename {Cantera/src => src}/transport/MMCollisionInt.h (100%) rename {Cantera/src => src}/transport/Makefile.am (100%) rename {Cantera/src => src}/transport/MixTransport.cpp (100%) rename {Cantera/src => src}/transport/MultiTransport.cpp (100%) rename {Cantera/src => src}/transport/SimpleTransport.cpp (100%) rename {Cantera/src => src}/transport/SolidTransport.cpp (100%) rename {Cantera/src => src}/transport/Tortuosity.h (100%) rename {Cantera/src => src}/transport/TortuosityBase.cpp (100%) rename {Cantera/src => src}/transport/TortuosityBase.h (100%) rename {Cantera/src => src}/transport/TortuosityBruggeman.cpp (100%) rename {Cantera/src => src}/transport/TortuosityBruggeman.h (100%) rename {Cantera/src => src}/transport/TortuosityMaxwell.cpp (100%) rename {Cantera/src => src}/transport/TortuosityMaxwell.h (100%) rename {Cantera/src => src}/transport/TortuosityPercolation.cpp (100%) rename {Cantera/src => src}/transport/TortuosityPercolation.h (100%) rename {Cantera/src => src}/transport/TransportBase.cpp (100%) rename {Cantera/src => src}/transport/TransportFactory.cpp (100%) rename {Cantera/src => src}/transport/TransportParams.cpp (100%) rename {Cantera/src => src}/transport/WaterTransport.cpp (100%) rename {Cantera/src => src}/zeroD/ConstPressureReactor.cpp (100%) rename {Cantera/src => src}/zeroD/FlowDevice.cpp (100%) rename {Cantera/src => src}/zeroD/FlowReactor.cpp (100%) rename {Cantera/src => src}/zeroD/Makefile.am (100%) rename {Cantera/src => src}/zeroD/Reactor.cpp (100%) rename {Cantera/src => src}/zeroD/ReactorBase.cpp (100%) rename {Cantera/src => src}/zeroD/ReactorFactory.cpp (100%) rename {Cantera/src => src}/zeroD/ReactorNet.cpp (100%) rename {Cantera/src => src}/zeroD/Wall.cpp (100%) delete mode 100644 tools/Makefile.am delete mode 100644 tools/ctnew.in delete mode 100644 tools/templates/f77/demo_ftnlib.cpp diff --git a/Cantera/Makefile.am b/Cantera/Makefile.am deleted file mode 100644 index e7f5b3e5b..000000000 --- a/Cantera/Makefile.am +++ /dev/null @@ -1,4 +0,0 @@ -# $Id: $ - -# will need to add python and matlab -SUBDIRS = ext src user cxx diff --git a/Cantera/README.txt b/Cantera/README.txt deleted file mode 100644 index 23de2a853..000000000 --- a/Cantera/README.txt +++ /dev/null @@ -1,11 +0,0 @@ - -This directory contains the source for Cantera and its various -language interfaces. - -clib - the library of C-callable functions used by the Python and - Matlab interfaces. -cxx - files that are only required for C++ application programs. -matlab - the Cantera Matlab toolbox -python - the Cantera Python package -src - the Cantera kernel, used by Cantera in all its forms - diff --git a/Cantera/cxx/Makefile.am b/Cantera/cxx/Makefile.am deleted file mode 100644 index f963effea..000000000 --- a/Cantera/cxx/Makefile.am +++ /dev/null @@ -1 +0,0 @@ -SUBDIRS = src \ No newline at end of file diff --git a/Cantera/cxx/src/Makefile.am b/Cantera/cxx/src/Makefile.am deleted file mode 100644 index fcd35b991..000000000 --- a/Cantera/cxx/src/Makefile.am +++ /dev/null @@ -1,28 +0,0 @@ -h_sources = - -cc_sources = importPhase.cpp - -AM_CPPFLAGS = -I$(top_builddir)/build/include -AM_CXXFLAGS = $(AM_CPPFLAGS) - -lib_LTLIBRARIES = $(top_builddir)/build/lib/libctcxx.la -library_includedir = $(top_builddir)/build/include -library_include_HEADERS = $(h_sources) - -#----------------------- -# Cantera Converters C/C++ library -#----------------------- - -__top_builddir__build_lib_libctcxx_la_LDFLAGS = $(all_libraries) -release $(GENERIC_RELEASE) -__top_builddir__build_lib_libctcxx_la_SOURCES = $(cc_sources) $(h_sources) - -__top_builddir__build_lib_libctcxx_include_HEADERS = $(h_sources) -__top_builddir__build_lib_libctcxx_includedir = $(prefix)/include - - -# header file accumulation -all: - @echo copying headers $< - cp -p *.h $(top_builddir)/build/include/ - -CLEANFILES = *.o diff --git a/Cantera/user/Makefile.am b/Cantera/user/Makefile.am deleted file mode 100644 index bd6545341..000000000 --- a/Cantera/user/Makefile.am +++ /dev/null @@ -1,17 +0,0 @@ -cc_sources = user.cpp - -AM_CPPFLAGS = -I$(top_builddir)/build/include/ -I$(top_builddir)/build/include/cantera -AM_CXXFLAGS = $(AM_CPPFLAGS) - -lib_LTLIBRARIES = $(top_builddir)/build/lib/libuser.la -library_includedir = $(top_builddir)/build/include -library_include_HEADERS = $(h_sources) - -#----------------------- -# Cantera Converters C/C++ library -#----------------------- - -__top_builddir__build_lib_libuser_la_LDFLAGS = $(all_libraries) -release $(GENERIC_RELEASE) -__top_builddir__build_lib_libuser_la_SOURCES = $(cc_sources) $(h_sources) - -CLEANFILES = *.o diff --git a/apps/README.txt b/apps/README.txt deleted file mode 100644 index 6c6cafadd..000000000 --- a/apps/README.txt +++ /dev/null @@ -1,8 +0,0 @@ -This directory is for applications that are not part of Cantera -itself, but may be distributed with Cantera. - -Contents: - -MixMaster -- A graphical control panel for viewing mixture properties - (Python) - diff --git a/docs/Makefile.am b/doc/Makefile.am similarity index 100% rename from docs/Makefile.am rename to doc/Makefile.am diff --git a/docs/Cantera.cfg.in b/doc/doxygen/Cantera.cfg.in similarity index 100% rename from docs/Cantera.cfg.in rename to doc/doxygen/Cantera.cfg.in diff --git a/docs/doxyinput/Cantera.txt b/doc/doxygen/Cantera.txt similarity index 100% rename from docs/doxyinput/Cantera.txt rename to doc/doxygen/Cantera.txt diff --git a/docs/aminclude.am b/doc/doxygen/aminclude.am similarity index 100% rename from docs/aminclude.am rename to doc/doxygen/aminclude.am diff --git a/docs/html/banner4.jpg b/doc/doxygen/banner4.jpg similarity index 100% rename from docs/html/banner4.jpg rename to doc/doxygen/banner4.jpg diff --git a/docs/doxyinput/bindings.txt b/doc/doxygen/bindings.txt similarity index 100% rename from docs/doxyinput/bindings.txt rename to doc/doxygen/bindings.txt diff --git a/docs/doxyinput/build.txt b/doc/doxygen/build.txt similarity index 100% rename from docs/doxyinput/build.txt rename to doc/doxygen/build.txt diff --git a/docs/doxyinput/buildcygwin.txt b/doc/doxygen/buildcygwin.txt similarity index 100% rename from docs/doxyinput/buildcygwin.txt rename to doc/doxygen/buildcygwin.txt diff --git a/docs/doxyinput/configuring.txt b/doc/doxygen/configuring.txt similarity index 100% rename from docs/doxyinput/configuring.txt rename to doc/doxygen/configuring.txt diff --git a/docs/doxyinput/ctnew.txt b/doc/doxygen/ctnew.txt similarity index 100% rename from docs/doxyinput/ctnew.txt rename to doc/doxygen/ctnew.txt diff --git a/docs/doxyinput/cxx-headers.txt b/doc/doxygen/cxx-headers.txt similarity index 100% rename from docs/doxyinput/cxx-headers.txt rename to doc/doxygen/cxx-headers.txt diff --git a/docs/doxyinput/cxx-setup.txt b/doc/doxygen/cxx-setup.txt similarity index 100% rename from docs/doxyinput/cxx-setup.txt rename to doc/doxygen/cxx-setup.txt diff --git a/docs/doxyinput/demo.cpp b/doc/doxygen/demo.cpp similarity index 100% rename from docs/doxyinput/demo.cpp rename to doc/doxygen/demo.cpp diff --git a/docs/doxyinput/demo1.cpp b/doc/doxygen/demo1.cpp similarity index 100% rename from docs/doxyinput/demo1.cpp rename to doc/doxygen/demo1.cpp diff --git a/docs/doxyinput/demo1a.cpp b/doc/doxygen/demo1a.cpp similarity index 100% rename from docs/doxyinput/demo1a.cpp rename to doc/doxygen/demo1a.cpp diff --git a/docs/doxyinput/demoequil.cpp b/doc/doxygen/demoequil.cpp similarity index 100% rename from docs/doxyinput/demoequil.cpp rename to doc/doxygen/demoequil.cpp diff --git a/docs/doxyinput/edemo.cpp b/doc/doxygen/edemo.cpp similarity index 100% rename from docs/doxyinput/edemo.cpp rename to doc/doxygen/edemo.cpp diff --git a/docs/doxyinput/equildemo.txt b/doc/doxygen/equildemo.txt similarity index 100% rename from docs/doxyinput/equildemo.txt rename to doc/doxygen/equildemo.txt diff --git a/docs/doxyinput/ex1.cpp b/doc/doxygen/ex1.cpp similarity index 100% rename from docs/doxyinput/ex1.cpp rename to doc/doxygen/ex1.cpp diff --git a/docs/doxyinput/except.cpp b/doc/doxygen/except.cpp similarity index 100% rename from docs/doxyinput/except.cpp rename to doc/doxygen/except.cpp diff --git a/docs/doxyinput/exceptions.txt b/doc/doxygen/exceptions.txt similarity index 100% rename from docs/doxyinput/exceptions.txt rename to doc/doxygen/exceptions.txt diff --git a/docs/doxyinput/initthermo.txt b/doc/doxygen/initthermo.txt similarity index 100% rename from docs/doxyinput/initthermo.txt rename to doc/doxygen/initthermo.txt diff --git a/docs/doxyinput/introcxx.txt b/doc/doxygen/introcxx.txt similarity index 100% rename from docs/doxyinput/introcxx.txt rename to doc/doxygen/introcxx.txt diff --git a/docs/doxyinput/languages.txt b/doc/doxygen/languages.txt similarity index 100% rename from docs/doxyinput/languages.txt rename to doc/doxygen/languages.txt diff --git a/docs/doxyinput/matlab.txt b/doc/doxygen/matlab.txt similarity index 100% rename from docs/doxyinput/matlab.txt rename to doc/doxygen/matlab.txt diff --git a/docs/doxyinput/numarray.txt b/doc/doxygen/numarray.txt similarity index 100% rename from docs/doxyinput/numarray.txt rename to doc/doxygen/numarray.txt diff --git a/docs/doxyinput/thermo.txt b/doc/doxygen/thermo.txt similarity index 100% rename from docs/doxyinput/thermo.txt rename to doc/doxygen/thermo.txt diff --git a/docs/doxyinput/thermodemo.cpp b/doc/doxygen/thermodemo.cpp similarity index 100% rename from docs/doxyinput/thermodemo.cpp rename to doc/doxygen/thermodemo.cpp diff --git a/docs/doxyinput/thermodemo.txt b/doc/doxygen/thermodemo.txt similarity index 100% rename from docs/doxyinput/thermodemo.txt rename to doc/doxygen/thermodemo.txt diff --git a/docs/doxyinput/transport.txt b/doc/doxygen/transport.txt similarity index 100% rename from docs/doxyinput/transport.txt rename to doc/doxygen/transport.txt diff --git a/docs/doxyinput/winbuild.txt b/doc/doxygen/winbuild.txt similarity index 100% rename from docs/doxyinput/winbuild.txt rename to doc/doxygen/winbuild.txt diff --git a/docs/python/makedoc b/doc/python/makedoc similarity index 100% rename from docs/python/makedoc rename to doc/python/makedoc diff --git a/docs/python/mkmkdoc.py b/doc/python/mkmkdoc.py similarity index 100% rename from docs/python/mkmkdoc.py rename to doc/python/mkmkdoc.py diff --git a/Cantera/ext/Makefile.am b/ext/Makefile.am similarity index 100% rename from Cantera/ext/Makefile.am rename to ext/Makefile.am diff --git a/Cantera/cxx/include/Cantera.h b/include/cantera/Cantera.h similarity index 100% rename from Cantera/cxx/include/Cantera.h rename to include/cantera/Cantera.h diff --git a/Cantera/cxx/include/Edge.h b/include/cantera/Edge.h similarity index 100% rename from Cantera/cxx/include/Edge.h rename to include/cantera/Edge.h diff --git a/Cantera/cxx/include/GRI30.h b/include/cantera/GRI30.h similarity index 100% rename from Cantera/cxx/include/GRI30.h rename to include/cantera/GRI30.h diff --git a/Cantera/cxx/include/IdealGasMix.h b/include/cantera/IdealGasMix.h similarity index 100% rename from Cantera/cxx/include/IdealGasMix.h rename to include/cantera/IdealGasMix.h diff --git a/Cantera/cxx/include/IncompressibleSolid.h b/include/cantera/IncompressibleSolid.h similarity index 100% rename from Cantera/cxx/include/IncompressibleSolid.h rename to include/cantera/IncompressibleSolid.h diff --git a/Cantera/cxx/include/Interface.h b/include/cantera/Interface.h similarity index 100% rename from Cantera/cxx/include/Interface.h rename to include/cantera/Interface.h diff --git a/Cantera/cxx/include/Metal.h b/include/cantera/Metal.h similarity index 100% rename from Cantera/cxx/include/Metal.h rename to include/cantera/Metal.h diff --git a/Cantera/cxx/include/PureFluid.h b/include/cantera/PureFluid.h similarity index 100% rename from Cantera/cxx/include/PureFluid.h rename to include/cantera/PureFluid.h diff --git a/Cantera/src/base/Array.h b/include/cantera/base/Array.h similarity index 100% rename from Cantera/src/base/Array.h rename to include/cantera/base/Array.h diff --git a/Cantera/src/base/FactoryBase.h b/include/cantera/base/FactoryBase.h similarity index 100% rename from Cantera/src/base/FactoryBase.h rename to include/cantera/base/FactoryBase.h diff --git a/Cantera/src/base/PrintCtrl.h b/include/cantera/base/PrintCtrl.h similarity index 100% rename from Cantera/src/base/PrintCtrl.h rename to include/cantera/base/PrintCtrl.h diff --git a/Cantera/src/base/XML_Writer.h b/include/cantera/base/XML_Writer.h similarity index 100% rename from Cantera/src/base/XML_Writer.h rename to include/cantera/base/XML_Writer.h diff --git a/Cantera/src/base/clockWC.h b/include/cantera/base/clockWC.h similarity index 100% rename from Cantera/src/base/clockWC.h rename to include/cantera/base/clockWC.h diff --git a/Cantera/src/base/config.h.in b/include/cantera/base/config.h.in similarity index 100% rename from Cantera/src/base/config.h.in rename to include/cantera/base/config.h.in diff --git a/Cantera/src/base/ct_defs.h b/include/cantera/base/ct_defs.h similarity index 100% rename from Cantera/src/base/ct_defs.h rename to include/cantera/base/ct_defs.h diff --git a/Cantera/src/base/ctexceptions.h b/include/cantera/base/ctexceptions.h similarity index 100% rename from Cantera/src/base/ctexceptions.h rename to include/cantera/base/ctexceptions.h diff --git a/Cantera/src/base/ctml.h b/include/cantera/base/ctml.h similarity index 100% rename from Cantera/src/base/ctml.h rename to include/cantera/base/ctml.h diff --git a/Cantera/src/base/global.h b/include/cantera/base/global.h similarity index 100% rename from Cantera/src/base/global.h rename to include/cantera/base/global.h diff --git a/Cantera/src/base/logger.h b/include/cantera/base/logger.h similarity index 100% rename from Cantera/src/base/logger.h rename to include/cantera/base/logger.h diff --git a/Cantera/src/base/mdp_allo.h b/include/cantera/base/mdp_allo.h similarity index 100% rename from Cantera/src/base/mdp_allo.h rename to include/cantera/base/mdp_allo.h diff --git a/Cantera/src/base/stringUtils.h b/include/cantera/base/stringUtils.h similarity index 100% rename from Cantera/src/base/stringUtils.h rename to include/cantera/base/stringUtils.h diff --git a/Cantera/src/base/utilities.h b/include/cantera/base/utilities.h similarity index 100% rename from Cantera/src/base/utilities.h rename to include/cantera/base/utilities.h diff --git a/Cantera/src/base/vec_functions.h b/include/cantera/base/vec_functions.h similarity index 100% rename from Cantera/src/base/vec_functions.h rename to include/cantera/base/vec_functions.h diff --git a/Cantera/src/base/xml.h b/include/cantera/base/xml.h similarity index 100% rename from Cantera/src/base/xml.h rename to include/cantera/base/xml.h diff --git a/Cantera/cxx/include/electrolyteThermo.h b/include/cantera/electrolyteThermo.h similarity index 100% rename from Cantera/cxx/include/electrolyteThermo.h rename to include/cantera/electrolyteThermo.h diff --git a/Cantera/src/equil/ChemEquil.h b/include/cantera/equil/ChemEquil.h similarity index 100% rename from Cantera/src/equil/ChemEquil.h rename to include/cantera/equil/ChemEquil.h diff --git a/Cantera/src/equil/MultiPhase.h b/include/cantera/equil/MultiPhase.h similarity index 100% rename from Cantera/src/equil/MultiPhase.h rename to include/cantera/equil/MultiPhase.h diff --git a/Cantera/src/equil/MultiPhaseEquil.h b/include/cantera/equil/MultiPhaseEquil.h similarity index 100% rename from Cantera/src/equil/MultiPhaseEquil.h rename to include/cantera/equil/MultiPhaseEquil.h diff --git a/Cantera/src/equil/equil.h b/include/cantera/equil/equil.h similarity index 100% rename from Cantera/src/equil/equil.h rename to include/cantera/equil/equil.h diff --git a/Cantera/src/equil/vcs_MultiPhaseEquil.h b/include/cantera/equil/vcs_MultiPhaseEquil.h similarity index 100% rename from Cantera/src/equil/vcs_MultiPhaseEquil.h rename to include/cantera/equil/vcs_MultiPhaseEquil.h diff --git a/Cantera/src/equil/vcs_defs.h b/include/cantera/equil/vcs_defs.h similarity index 100% rename from Cantera/src/equil/vcs_defs.h rename to include/cantera/equil/vcs_defs.h diff --git a/Cantera/cxx/include/equilibrium.h b/include/cantera/equilibrium.h similarity index 100% rename from Cantera/cxx/include/equilibrium.h rename to include/cantera/equilibrium.h diff --git a/Cantera/cxx/include/integrators.h b/include/cantera/integrators.h similarity index 100% rename from Cantera/cxx/include/integrators.h rename to include/cantera/integrators.h diff --git a/Cantera/cxx/include/kinetics.h b/include/cantera/kinetics.h similarity index 100% rename from Cantera/cxx/include/kinetics.h rename to include/cantera/kinetics.h diff --git a/Cantera/src/kinetics/AqueousKinetics.h b/include/cantera/kinetics/AqueousKinetics.h similarity index 100% rename from Cantera/src/kinetics/AqueousKinetics.h rename to include/cantera/kinetics/AqueousKinetics.h diff --git a/Cantera/src/kinetics/EdgeKinetics.h b/include/cantera/kinetics/EdgeKinetics.h similarity index 100% rename from Cantera/src/kinetics/EdgeKinetics.h rename to include/cantera/kinetics/EdgeKinetics.h diff --git a/Cantera/src/kinetics/Enhanced3BConc.h b/include/cantera/kinetics/Enhanced3BConc.h similarity index 100% rename from Cantera/src/kinetics/Enhanced3BConc.h rename to include/cantera/kinetics/Enhanced3BConc.h diff --git a/Cantera/src/kinetics/FalloffFactory.h b/include/cantera/kinetics/FalloffFactory.h similarity index 100% rename from Cantera/src/kinetics/FalloffFactory.h rename to include/cantera/kinetics/FalloffFactory.h diff --git a/Cantera/src/kinetics/FalloffMgr.h b/include/cantera/kinetics/FalloffMgr.h similarity index 100% rename from Cantera/src/kinetics/FalloffMgr.h rename to include/cantera/kinetics/FalloffMgr.h diff --git a/Cantera/src/kinetics/GRI_30_Kinetics.h b/include/cantera/kinetics/GRI_30_Kinetics.h similarity index 100% rename from Cantera/src/kinetics/GRI_30_Kinetics.h rename to include/cantera/kinetics/GRI_30_Kinetics.h diff --git a/Cantera/src/kinetics/GasKinetics.h b/include/cantera/kinetics/GasKinetics.h similarity index 100% rename from Cantera/src/kinetics/GasKinetics.h rename to include/cantera/kinetics/GasKinetics.h diff --git a/Cantera/src/kinetics/Group.h b/include/cantera/kinetics/Group.h similarity index 100% rename from Cantera/src/kinetics/Group.h rename to include/cantera/kinetics/Group.h diff --git a/Cantera/src/kinetics/InterfaceKinetics.h b/include/cantera/kinetics/InterfaceKinetics.h similarity index 100% rename from Cantera/src/kinetics/InterfaceKinetics.h rename to include/cantera/kinetics/InterfaceKinetics.h diff --git a/Cantera/src/kinetics/Kinetics.h b/include/cantera/kinetics/Kinetics.h similarity index 100% rename from Cantera/src/kinetics/Kinetics.h rename to include/cantera/kinetics/Kinetics.h diff --git a/Cantera/src/kinetics/KineticsFactory.h b/include/cantera/kinetics/KineticsFactory.h similarity index 100% rename from Cantera/src/kinetics/KineticsFactory.h rename to include/cantera/kinetics/KineticsFactory.h diff --git a/Cantera/src/kinetics/RateCoeffMgr.h b/include/cantera/kinetics/RateCoeffMgr.h similarity index 100% rename from Cantera/src/kinetics/RateCoeffMgr.h rename to include/cantera/kinetics/RateCoeffMgr.h diff --git a/Cantera/src/kinetics/ReactionPath.h b/include/cantera/kinetics/ReactionPath.h similarity index 100% rename from Cantera/src/kinetics/ReactionPath.h rename to include/cantera/kinetics/ReactionPath.h diff --git a/Cantera/src/kinetics/ReactionStoichMgr.h b/include/cantera/kinetics/ReactionStoichMgr.h similarity index 100% rename from Cantera/src/kinetics/ReactionStoichMgr.h rename to include/cantera/kinetics/ReactionStoichMgr.h diff --git a/Cantera/src/kinetics/RxnRates.h b/include/cantera/kinetics/RxnRates.h similarity index 100% rename from Cantera/src/kinetics/RxnRates.h rename to include/cantera/kinetics/RxnRates.h diff --git a/Cantera/src/kinetics/ThirdBodyMgr.h b/include/cantera/kinetics/ThirdBodyMgr.h similarity index 100% rename from Cantera/src/kinetics/ThirdBodyMgr.h rename to include/cantera/kinetics/ThirdBodyMgr.h diff --git a/Cantera/src/kinetics/importKinetics.h b/include/cantera/kinetics/importKinetics.h similarity index 100% rename from Cantera/src/kinetics/importKinetics.h rename to include/cantera/kinetics/importKinetics.h diff --git a/Cantera/src/kinetics/reaction_defs.h b/include/cantera/kinetics/reaction_defs.h similarity index 100% rename from Cantera/src/kinetics/reaction_defs.h rename to include/cantera/kinetics/reaction_defs.h diff --git a/Cantera/cxx/include/numerics.h b/include/cantera/numerics.h similarity index 100% rename from Cantera/cxx/include/numerics.h rename to include/cantera/numerics.h diff --git a/Cantera/src/numerics/ArrayViewer.h b/include/cantera/numerics/ArrayViewer.h similarity index 100% rename from Cantera/src/numerics/ArrayViewer.h rename to include/cantera/numerics/ArrayViewer.h diff --git a/Cantera/src/numerics/BandMatrix.h b/include/cantera/numerics/BandMatrix.h similarity index 100% rename from Cantera/src/numerics/BandMatrix.h rename to include/cantera/numerics/BandMatrix.h diff --git a/Cantera/src/numerics/DAE_Solver.h b/include/cantera/numerics/DAE_Solver.h similarity index 100% rename from Cantera/src/numerics/DAE_Solver.h rename to include/cantera/numerics/DAE_Solver.h diff --git a/Cantera/src/numerics/DenseMatrix.h b/include/cantera/numerics/DenseMatrix.h similarity index 100% rename from Cantera/src/numerics/DenseMatrix.h rename to include/cantera/numerics/DenseMatrix.h diff --git a/Cantera/src/numerics/Func1.h b/include/cantera/numerics/Func1.h similarity index 100% rename from Cantera/src/numerics/Func1.h rename to include/cantera/numerics/Func1.h diff --git a/Cantera/src/numerics/FuncEval.h b/include/cantera/numerics/FuncEval.h similarity index 100% rename from Cantera/src/numerics/FuncEval.h rename to include/cantera/numerics/FuncEval.h diff --git a/Cantera/src/numerics/GeneralMatrix.h b/include/cantera/numerics/GeneralMatrix.h similarity index 100% rename from Cantera/src/numerics/GeneralMatrix.h rename to include/cantera/numerics/GeneralMatrix.h diff --git a/Cantera/src/numerics/IDA_Solver.h b/include/cantera/numerics/IDA_Solver.h similarity index 100% rename from Cantera/src/numerics/IDA_Solver.h rename to include/cantera/numerics/IDA_Solver.h diff --git a/Cantera/src/numerics/Integrator.h b/include/cantera/numerics/Integrator.h similarity index 100% rename from Cantera/src/numerics/Integrator.h rename to include/cantera/numerics/Integrator.h diff --git a/Cantera/src/numerics/NonlinearSolver.h b/include/cantera/numerics/NonlinearSolver.h similarity index 100% rename from Cantera/src/numerics/NonlinearSolver.h rename to include/cantera/numerics/NonlinearSolver.h diff --git a/Cantera/src/numerics/ResidEval.h b/include/cantera/numerics/ResidEval.h similarity index 100% rename from Cantera/src/numerics/ResidEval.h rename to include/cantera/numerics/ResidEval.h diff --git a/Cantera/src/numerics/ResidJacEval.h b/include/cantera/numerics/ResidJacEval.h similarity index 100% rename from Cantera/src/numerics/ResidJacEval.h rename to include/cantera/numerics/ResidJacEval.h diff --git a/Cantera/src/numerics/RootFind.h b/include/cantera/numerics/RootFind.h similarity index 100% rename from Cantera/src/numerics/RootFind.h rename to include/cantera/numerics/RootFind.h diff --git a/Cantera/src/numerics/SquareMatrix.h b/include/cantera/numerics/SquareMatrix.h similarity index 100% rename from Cantera/src/numerics/SquareMatrix.h rename to include/cantera/numerics/SquareMatrix.h diff --git a/Cantera/src/numerics/ctlapack.h b/include/cantera/numerics/ctlapack.h similarity index 100% rename from Cantera/src/numerics/ctlapack.h rename to include/cantera/numerics/ctlapack.h diff --git a/Cantera/src/numerics/funcs.h b/include/cantera/numerics/funcs.h similarity index 100% rename from Cantera/src/numerics/funcs.h rename to include/cantera/numerics/funcs.h diff --git a/Cantera/src/numerics/polyfit.h b/include/cantera/numerics/polyfit.h similarity index 100% rename from Cantera/src/numerics/polyfit.h rename to include/cantera/numerics/polyfit.h diff --git a/Cantera/src/numerics/solveProb.h b/include/cantera/numerics/solveProb.h similarity index 100% rename from Cantera/src/numerics/solveProb.h rename to include/cantera/numerics/solveProb.h diff --git a/Cantera/src/oneD/Domain1D.h b/include/cantera/oneD/Domain1D.h similarity index 100% rename from Cantera/src/oneD/Domain1D.h rename to include/cantera/oneD/Domain1D.h diff --git a/Cantera/src/oneD/Inlet1D.h b/include/cantera/oneD/Inlet1D.h similarity index 100% rename from Cantera/src/oneD/Inlet1D.h rename to include/cantera/oneD/Inlet1D.h diff --git a/Cantera/src/oneD/MultiJac.h b/include/cantera/oneD/MultiJac.h similarity index 100% rename from Cantera/src/oneD/MultiJac.h rename to include/cantera/oneD/MultiJac.h diff --git a/Cantera/src/oneD/MultiNewton.h b/include/cantera/oneD/MultiNewton.h similarity index 100% rename from Cantera/src/oneD/MultiNewton.h rename to include/cantera/oneD/MultiNewton.h diff --git a/Cantera/src/oneD/OneDim.h b/include/cantera/oneD/OneDim.h similarity index 100% rename from Cantera/src/oneD/OneDim.h rename to include/cantera/oneD/OneDim.h diff --git a/Cantera/src/oneD/Sim1D.h b/include/cantera/oneD/Sim1D.h similarity index 100% rename from Cantera/src/oneD/Sim1D.h rename to include/cantera/oneD/Sim1D.h diff --git a/Cantera/src/oneD/StFlow.h b/include/cantera/oneD/StFlow.h similarity index 100% rename from Cantera/src/oneD/StFlow.h rename to include/cantera/oneD/StFlow.h diff --git a/Cantera/src/oneD/Surf1D.h b/include/cantera/oneD/Surf1D.h similarity index 100% rename from Cantera/src/oneD/Surf1D.h rename to include/cantera/oneD/Surf1D.h diff --git a/Cantera/src/oneD/refine.h b/include/cantera/oneD/refine.h similarity index 100% rename from Cantera/src/oneD/refine.h rename to include/cantera/oneD/refine.h diff --git a/Cantera/cxx/include/onedim.h b/include/cantera/onedim.h similarity index 90% rename from Cantera/cxx/include/onedim.h rename to include/cantera/onedim.h index 175806e98..7278bb023 100755 --- a/Cantera/cxx/include/onedim.h +++ b/include/cantera/onedim.h @@ -5,6 +5,7 @@ #include "kernel/OneDim.h" #include "kernel/Domain1D.h" #include "kernel/Inlet1D.h" +#include "kernel/Surf1D.h" #include "kernel/MultiNewton.h" #include "kernel/MultiJac.h" #include "kernel/StFlow.h" diff --git a/Cantera/cxx/include/radiation.h b/include/cantera/radiation.h similarity index 100% rename from Cantera/cxx/include/radiation.h rename to include/cantera/radiation.h diff --git a/Cantera/cxx/include/reactionpaths.h b/include/cantera/reactionpaths.h similarity index 100% rename from Cantera/cxx/include/reactionpaths.h rename to include/cantera/reactionpaths.h diff --git a/Cantera/cxx/include/solvers.h b/include/cantera/solvers.h similarity index 100% rename from Cantera/cxx/include/solvers.h rename to include/cantera/solvers.h diff --git a/Cantera/cxx/include/spectra.h b/include/cantera/spectra.h similarity index 100% rename from Cantera/cxx/include/spectra.h rename to include/cantera/spectra.h diff --git a/Cantera/src/spectra/LineBroadener.h b/include/cantera/spectra/LineBroadener.h similarity index 100% rename from Cantera/src/spectra/LineBroadener.h rename to include/cantera/spectra/LineBroadener.h diff --git a/Cantera/src/spectra/rotor.h b/include/cantera/spectra/rotor.h similarity index 100% rename from Cantera/src/spectra/rotor.h rename to include/cantera/spectra/rotor.h diff --git a/Cantera/cxx/include/surface.h b/include/cantera/surface.h similarity index 100% rename from Cantera/cxx/include/surface.h rename to include/cantera/surface.h diff --git a/Cantera/cxx/include/thermo.h b/include/cantera/thermo.h similarity index 100% rename from Cantera/cxx/include/thermo.h rename to include/cantera/thermo.h diff --git a/Cantera/src/thermo/AdsorbateThermo.h b/include/cantera/thermo/AdsorbateThermo.h similarity index 100% rename from Cantera/src/thermo/AdsorbateThermo.h rename to include/cantera/thermo/AdsorbateThermo.h diff --git a/Cantera/src/thermo/ConstDensityThermo.h b/include/cantera/thermo/ConstDensityThermo.h similarity index 100% rename from Cantera/src/thermo/ConstDensityThermo.h rename to include/cantera/thermo/ConstDensityThermo.h diff --git a/Cantera/src/thermo/Constituents.h b/include/cantera/thermo/Constituents.h similarity index 100% rename from Cantera/src/thermo/Constituents.h rename to include/cantera/thermo/Constituents.h diff --git a/Cantera/src/thermo/Crystal.h b/include/cantera/thermo/Crystal.h similarity index 100% rename from Cantera/src/thermo/Crystal.h rename to include/cantera/thermo/Crystal.h diff --git a/Cantera/src/thermo/DebyeHuckel.h b/include/cantera/thermo/DebyeHuckel.h similarity index 100% rename from Cantera/src/thermo/DebyeHuckel.h rename to include/cantera/thermo/DebyeHuckel.h diff --git a/Cantera/src/thermo/EdgePhase.h b/include/cantera/thermo/EdgePhase.h similarity index 100% rename from Cantera/src/thermo/EdgePhase.h rename to include/cantera/thermo/EdgePhase.h diff --git a/Cantera/src/thermo/Elements.h b/include/cantera/thermo/Elements.h similarity index 100% rename from Cantera/src/thermo/Elements.h rename to include/cantera/thermo/Elements.h diff --git a/Cantera/src/thermo/FixedChemPotSSTP.h b/include/cantera/thermo/FixedChemPotSSTP.h similarity index 100% rename from Cantera/src/thermo/FixedChemPotSSTP.h rename to include/cantera/thermo/FixedChemPotSSTP.h diff --git a/Cantera/src/thermo/GeneralSpeciesThermo.h b/include/cantera/thermo/GeneralSpeciesThermo.h similarity index 100% rename from Cantera/src/thermo/GeneralSpeciesThermo.h rename to include/cantera/thermo/GeneralSpeciesThermo.h diff --git a/Cantera/src/thermo/GibbsExcessVPSSTP.h b/include/cantera/thermo/GibbsExcessVPSSTP.h similarity index 100% rename from Cantera/src/thermo/GibbsExcessVPSSTP.h rename to include/cantera/thermo/GibbsExcessVPSSTP.h diff --git a/Cantera/src/thermo/HMWSoln.h b/include/cantera/thermo/HMWSoln.h similarity index 100% rename from Cantera/src/thermo/HMWSoln.h rename to include/cantera/thermo/HMWSoln.h diff --git a/Cantera/src/thermo/IdealGasPhase.h b/include/cantera/thermo/IdealGasPhase.h similarity index 100% rename from Cantera/src/thermo/IdealGasPhase.h rename to include/cantera/thermo/IdealGasPhase.h diff --git a/Cantera/src/thermo/IdealMolalSoln.h b/include/cantera/thermo/IdealMolalSoln.h similarity index 100% rename from Cantera/src/thermo/IdealMolalSoln.h rename to include/cantera/thermo/IdealMolalSoln.h diff --git a/Cantera/src/thermo/IdealSolidSolnPhase.h b/include/cantera/thermo/IdealSolidSolnPhase.h similarity index 100% rename from Cantera/src/thermo/IdealSolidSolnPhase.h rename to include/cantera/thermo/IdealSolidSolnPhase.h diff --git a/Cantera/src/thermo/IdealSolnGasVPSS.h b/include/cantera/thermo/IdealSolnGasVPSS.h similarity index 100% rename from Cantera/src/thermo/IdealSolnGasVPSS.h rename to include/cantera/thermo/IdealSolnGasVPSS.h diff --git a/Cantera/src/thermo/IonsFromNeutralVPSSTP.h b/include/cantera/thermo/IonsFromNeutralVPSSTP.h similarity index 100% rename from Cantera/src/thermo/IonsFromNeutralVPSSTP.h rename to include/cantera/thermo/IonsFromNeutralVPSSTP.h diff --git a/Cantera/src/thermo/LatticePhase.h b/include/cantera/thermo/LatticePhase.h similarity index 100% rename from Cantera/src/thermo/LatticePhase.h rename to include/cantera/thermo/LatticePhase.h diff --git a/Cantera/src/thermo/LatticeSolidPhase.h b/include/cantera/thermo/LatticeSolidPhase.h similarity index 100% rename from Cantera/src/thermo/LatticeSolidPhase.h rename to include/cantera/thermo/LatticeSolidPhase.h diff --git a/Cantera/src/thermo/MargulesVPSSTP.h b/include/cantera/thermo/MargulesVPSSTP.h similarity index 100% rename from Cantera/src/thermo/MargulesVPSSTP.h rename to include/cantera/thermo/MargulesVPSSTP.h diff --git a/Cantera/src/thermo/MetalPhase.h b/include/cantera/thermo/MetalPhase.h similarity index 100% rename from Cantera/src/thermo/MetalPhase.h rename to include/cantera/thermo/MetalPhase.h diff --git a/Cantera/src/thermo/MetalSHEelectrons.h b/include/cantera/thermo/MetalSHEelectrons.h similarity index 100% rename from Cantera/src/thermo/MetalSHEelectrons.h rename to include/cantera/thermo/MetalSHEelectrons.h diff --git a/Cantera/src/thermo/MineralEQ3.h b/include/cantera/thermo/MineralEQ3.h similarity index 100% rename from Cantera/src/thermo/MineralEQ3.h rename to include/cantera/thermo/MineralEQ3.h diff --git a/Cantera/src/thermo/MixedSolventElectrolyte.h b/include/cantera/thermo/MixedSolventElectrolyte.h similarity index 100% rename from Cantera/src/thermo/MixedSolventElectrolyte.h rename to include/cantera/thermo/MixedSolventElectrolyte.h diff --git a/Cantera/src/thermo/MixtureFugacityTP.h b/include/cantera/thermo/MixtureFugacityTP.h similarity index 100% rename from Cantera/src/thermo/MixtureFugacityTP.h rename to include/cantera/thermo/MixtureFugacityTP.h diff --git a/Cantera/src/thermo/MolalityVPSSTP.h b/include/cantera/thermo/MolalityVPSSTP.h similarity index 100% rename from Cantera/src/thermo/MolalityVPSSTP.h rename to include/cantera/thermo/MolalityVPSSTP.h diff --git a/Cantera/src/thermo/MolarityIonicVPSSTP.h b/include/cantera/thermo/MolarityIonicVPSSTP.h similarity index 100% rename from Cantera/src/thermo/MolarityIonicVPSSTP.h rename to include/cantera/thermo/MolarityIonicVPSSTP.h diff --git a/Cantera/src/thermo/Nasa9Poly1.h b/include/cantera/thermo/Nasa9Poly1.h similarity index 100% rename from Cantera/src/thermo/Nasa9Poly1.h rename to include/cantera/thermo/Nasa9Poly1.h diff --git a/Cantera/src/thermo/NasaPoly1.h b/include/cantera/thermo/NasaPoly1.h similarity index 100% rename from Cantera/src/thermo/NasaPoly1.h rename to include/cantera/thermo/NasaPoly1.h diff --git a/Cantera/src/thermo/PDSS.h b/include/cantera/thermo/PDSS.h similarity index 100% rename from Cantera/src/thermo/PDSS.h rename to include/cantera/thermo/PDSS.h diff --git a/Cantera/src/thermo/PDSS_ConstVol.h b/include/cantera/thermo/PDSS_ConstVol.h similarity index 100% rename from Cantera/src/thermo/PDSS_ConstVol.h rename to include/cantera/thermo/PDSS_ConstVol.h diff --git a/Cantera/src/thermo/PDSS_HKFT.h b/include/cantera/thermo/PDSS_HKFT.h similarity index 100% rename from Cantera/src/thermo/PDSS_HKFT.h rename to include/cantera/thermo/PDSS_HKFT.h diff --git a/Cantera/src/thermo/PDSS_IdealGas.h b/include/cantera/thermo/PDSS_IdealGas.h similarity index 100% rename from Cantera/src/thermo/PDSS_IdealGas.h rename to include/cantera/thermo/PDSS_IdealGas.h diff --git a/Cantera/src/thermo/PDSS_IonsFromNeutral.h b/include/cantera/thermo/PDSS_IonsFromNeutral.h similarity index 100% rename from Cantera/src/thermo/PDSS_IonsFromNeutral.h rename to include/cantera/thermo/PDSS_IonsFromNeutral.h diff --git a/Cantera/src/thermo/PDSS_SSVol.h b/include/cantera/thermo/PDSS_SSVol.h similarity index 100% rename from Cantera/src/thermo/PDSS_SSVol.h rename to include/cantera/thermo/PDSS_SSVol.h diff --git a/Cantera/src/thermo/PDSS_Water.h b/include/cantera/thermo/PDSS_Water.h similarity index 100% rename from Cantera/src/thermo/PDSS_Water.h rename to include/cantera/thermo/PDSS_Water.h diff --git a/Cantera/src/thermo/Phase.h b/include/cantera/thermo/Phase.h similarity index 100% rename from Cantera/src/thermo/Phase.h rename to include/cantera/thermo/Phase.h diff --git a/Cantera/src/thermo/PhaseCombo_Interaction.h b/include/cantera/thermo/PhaseCombo_Interaction.h similarity index 100% rename from Cantera/src/thermo/PhaseCombo_Interaction.h rename to include/cantera/thermo/PhaseCombo_Interaction.h diff --git a/Cantera/src/thermo/PseudoBinaryVPSSTP.h b/include/cantera/thermo/PseudoBinaryVPSSTP.h similarity index 100% rename from Cantera/src/thermo/PseudoBinaryVPSSTP.h rename to include/cantera/thermo/PseudoBinaryVPSSTP.h diff --git a/Cantera/src/thermo/PureFluidPhase.h b/include/cantera/thermo/PureFluidPhase.h similarity index 100% rename from Cantera/src/thermo/PureFluidPhase.h rename to include/cantera/thermo/PureFluidPhase.h diff --git a/Cantera/src/thermo/RedlichKwongMFTP.h b/include/cantera/thermo/RedlichKwongMFTP.h similarity index 100% rename from Cantera/src/thermo/RedlichKwongMFTP.h rename to include/cantera/thermo/RedlichKwongMFTP.h diff --git a/Cantera/src/thermo/SemiconductorPhase.h b/include/cantera/thermo/SemiconductorPhase.h similarity index 100% rename from Cantera/src/thermo/SemiconductorPhase.h rename to include/cantera/thermo/SemiconductorPhase.h diff --git a/Cantera/src/thermo/SimpleThermo.h b/include/cantera/thermo/SimpleThermo.h similarity index 100% rename from Cantera/src/thermo/SimpleThermo.h rename to include/cantera/thermo/SimpleThermo.h diff --git a/Cantera/src/thermo/SingleSpeciesTP.h b/include/cantera/thermo/SingleSpeciesTP.h similarity index 100% rename from Cantera/src/thermo/SingleSpeciesTP.h rename to include/cantera/thermo/SingleSpeciesTP.h diff --git a/Cantera/src/thermo/SpeciesThermo.h b/include/cantera/thermo/SpeciesThermo.h similarity index 100% rename from Cantera/src/thermo/SpeciesThermo.h rename to include/cantera/thermo/SpeciesThermo.h diff --git a/Cantera/src/thermo/SpeciesThermoFactory.h b/include/cantera/thermo/SpeciesThermoFactory.h similarity index 100% rename from Cantera/src/thermo/SpeciesThermoFactory.h rename to include/cantera/thermo/SpeciesThermoFactory.h diff --git a/Cantera/src/thermo/SpeciesThermoInterpType.h b/include/cantera/thermo/SpeciesThermoInterpType.h similarity index 100% rename from Cantera/src/thermo/SpeciesThermoInterpType.h rename to include/cantera/thermo/SpeciesThermoInterpType.h diff --git a/Cantera/src/thermo/SpeciesThermoMgr.h b/include/cantera/thermo/SpeciesThermoMgr.h similarity index 100% rename from Cantera/src/thermo/SpeciesThermoMgr.h rename to include/cantera/thermo/SpeciesThermoMgr.h diff --git a/Cantera/src/thermo/State.h b/include/cantera/thermo/State.h similarity index 100% rename from Cantera/src/thermo/State.h rename to include/cantera/thermo/State.h diff --git a/Cantera/src/thermo/StoichSubstance.h b/include/cantera/thermo/StoichSubstance.h similarity index 100% rename from Cantera/src/thermo/StoichSubstance.h rename to include/cantera/thermo/StoichSubstance.h diff --git a/Cantera/src/thermo/StoichSubstanceSSTP.h b/include/cantera/thermo/StoichSubstanceSSTP.h similarity index 100% rename from Cantera/src/thermo/StoichSubstanceSSTP.h rename to include/cantera/thermo/StoichSubstanceSSTP.h diff --git a/Cantera/src/thermo/SurfPhase.h b/include/cantera/thermo/SurfPhase.h similarity index 100% rename from Cantera/src/thermo/SurfPhase.h rename to include/cantera/thermo/SurfPhase.h diff --git a/Cantera/src/thermo/ThermoFactory.h b/include/cantera/thermo/ThermoFactory.h similarity index 100% rename from Cantera/src/thermo/ThermoFactory.h rename to include/cantera/thermo/ThermoFactory.h diff --git a/Cantera/src/thermo/ThermoPhase.h b/include/cantera/thermo/ThermoPhase.h similarity index 100% rename from Cantera/src/thermo/ThermoPhase.h rename to include/cantera/thermo/ThermoPhase.h diff --git a/Cantera/src/thermo/VPSSMgr.h b/include/cantera/thermo/VPSSMgr.h similarity index 100% rename from Cantera/src/thermo/VPSSMgr.h rename to include/cantera/thermo/VPSSMgr.h diff --git a/Cantera/src/thermo/VPSSMgr_ConstVol.h b/include/cantera/thermo/VPSSMgr_ConstVol.h similarity index 100% rename from Cantera/src/thermo/VPSSMgr_ConstVol.h rename to include/cantera/thermo/VPSSMgr_ConstVol.h diff --git a/Cantera/src/thermo/VPSSMgr_General.h b/include/cantera/thermo/VPSSMgr_General.h similarity index 100% rename from Cantera/src/thermo/VPSSMgr_General.h rename to include/cantera/thermo/VPSSMgr_General.h diff --git a/Cantera/src/thermo/VPSSMgr_IdealGas.h b/include/cantera/thermo/VPSSMgr_IdealGas.h similarity index 100% rename from Cantera/src/thermo/VPSSMgr_IdealGas.h rename to include/cantera/thermo/VPSSMgr_IdealGas.h diff --git a/Cantera/src/thermo/VPSSMgr_Water_ConstVol.h b/include/cantera/thermo/VPSSMgr_Water_ConstVol.h similarity index 100% rename from Cantera/src/thermo/VPSSMgr_Water_ConstVol.h rename to include/cantera/thermo/VPSSMgr_Water_ConstVol.h diff --git a/Cantera/src/thermo/VPSSMgr_Water_HKFT.h b/include/cantera/thermo/VPSSMgr_Water_HKFT.h similarity index 100% rename from Cantera/src/thermo/VPSSMgr_Water_HKFT.h rename to include/cantera/thermo/VPSSMgr_Water_HKFT.h diff --git a/Cantera/src/thermo/VPSSMgr_types.h b/include/cantera/thermo/VPSSMgr_types.h similarity index 100% rename from Cantera/src/thermo/VPSSMgr_types.h rename to include/cantera/thermo/VPSSMgr_types.h diff --git a/Cantera/src/thermo/VPStandardStateTP.h b/include/cantera/thermo/VPStandardStateTP.h similarity index 100% rename from Cantera/src/thermo/VPStandardStateTP.h rename to include/cantera/thermo/VPStandardStateTP.h diff --git a/Cantera/src/thermo/WaterProps.h b/include/cantera/thermo/WaterProps.h similarity index 100% rename from Cantera/src/thermo/WaterProps.h rename to include/cantera/thermo/WaterProps.h diff --git a/Cantera/src/thermo/WaterPropsIAPWS.h b/include/cantera/thermo/WaterPropsIAPWS.h similarity index 100% rename from Cantera/src/thermo/WaterPropsIAPWS.h rename to include/cantera/thermo/WaterPropsIAPWS.h diff --git a/Cantera/src/thermo/WaterPropsIAPWSphi.h b/include/cantera/thermo/WaterPropsIAPWSphi.h similarity index 100% rename from Cantera/src/thermo/WaterPropsIAPWSphi.h rename to include/cantera/thermo/WaterPropsIAPWSphi.h diff --git a/Cantera/src/thermo/WaterSSTP.h b/include/cantera/thermo/WaterSSTP.h similarity index 100% rename from Cantera/src/thermo/WaterSSTP.h rename to include/cantera/thermo/WaterSSTP.h diff --git a/Cantera/src/thermo/electrolytes.h b/include/cantera/thermo/electrolytes.h similarity index 100% rename from Cantera/src/thermo/electrolytes.h rename to include/cantera/thermo/electrolytes.h diff --git a/Cantera/src/thermo/mix_defs.h b/include/cantera/thermo/mix_defs.h similarity index 100% rename from Cantera/src/thermo/mix_defs.h rename to include/cantera/thermo/mix_defs.h diff --git a/Cantera/src/thermo/speciesThermoTypes.h b/include/cantera/thermo/speciesThermoTypes.h similarity index 100% rename from Cantera/src/thermo/speciesThermoTypes.h rename to include/cantera/thermo/speciesThermoTypes.h diff --git a/ext/tpx/Sub.h b/include/cantera/tpx/Sub.h similarity index 100% rename from ext/tpx/Sub.h rename to include/cantera/tpx/Sub.h diff --git a/ext/tpx/utils.h b/include/cantera/tpx/utils.h similarity index 100% rename from ext/tpx/utils.h rename to include/cantera/tpx/utils.h diff --git a/Cantera/cxx/include/transport.h b/include/cantera/transport.h similarity index 100% rename from Cantera/cxx/include/transport.h rename to include/cantera/transport.h diff --git a/Cantera/src/transport/AqueousTransport.h b/include/cantera/transport/AqueousTransport.h similarity index 100% rename from Cantera/src/transport/AqueousTransport.h rename to include/cantera/transport/AqueousTransport.h diff --git a/Cantera/src/transport/DustyGasTransport.h b/include/cantera/transport/DustyGasTransport.h similarity index 100% rename from Cantera/src/transport/DustyGasTransport.h rename to include/cantera/transport/DustyGasTransport.h diff --git a/Cantera/src/transport/LTPspecies.h b/include/cantera/transport/LTPspecies.h similarity index 100% rename from Cantera/src/transport/LTPspecies.h rename to include/cantera/transport/LTPspecies.h diff --git a/Cantera/src/transport/LiquidTranInteraction.h b/include/cantera/transport/LiquidTranInteraction.h similarity index 100% rename from Cantera/src/transport/LiquidTranInteraction.h rename to include/cantera/transport/LiquidTranInteraction.h diff --git a/Cantera/src/transport/LiquidTransport.h b/include/cantera/transport/LiquidTransport.h similarity index 100% rename from Cantera/src/transport/LiquidTransport.h rename to include/cantera/transport/LiquidTransport.h diff --git a/Cantera/src/transport/LiquidTransportData.h b/include/cantera/transport/LiquidTransportData.h similarity index 100% rename from Cantera/src/transport/LiquidTransportData.h rename to include/cantera/transport/LiquidTransportData.h diff --git a/Cantera/src/transport/LiquidTransportParams.h b/include/cantera/transport/LiquidTransportParams.h similarity index 100% rename from Cantera/src/transport/LiquidTransportParams.h rename to include/cantera/transport/LiquidTransportParams.h diff --git a/Cantera/src/transport/MixTransport.h b/include/cantera/transport/MixTransport.h similarity index 100% rename from Cantera/src/transport/MixTransport.h rename to include/cantera/transport/MixTransport.h diff --git a/Cantera/src/transport/MultiTransport.h b/include/cantera/transport/MultiTransport.h similarity index 100% rename from Cantera/src/transport/MultiTransport.h rename to include/cantera/transport/MultiTransport.h diff --git a/Cantera/src/transport/SimpleTransport.h b/include/cantera/transport/SimpleTransport.h similarity index 100% rename from Cantera/src/transport/SimpleTransport.h rename to include/cantera/transport/SimpleTransport.h diff --git a/Cantera/src/transport/SolidTransport.h b/include/cantera/transport/SolidTransport.h similarity index 100% rename from Cantera/src/transport/SolidTransport.h rename to include/cantera/transport/SolidTransport.h diff --git a/Cantera/src/transport/TransportBase.h b/include/cantera/transport/TransportBase.h similarity index 100% rename from Cantera/src/transport/TransportBase.h rename to include/cantera/transport/TransportBase.h diff --git a/Cantera/src/transport/TransportFactory.h b/include/cantera/transport/TransportFactory.h similarity index 100% rename from Cantera/src/transport/TransportFactory.h rename to include/cantera/transport/TransportFactory.h diff --git a/Cantera/src/transport/TransportParams.h b/include/cantera/transport/TransportParams.h similarity index 100% rename from Cantera/src/transport/TransportParams.h rename to include/cantera/transport/TransportParams.h diff --git a/Cantera/src/transport/WaterTransport.h b/include/cantera/transport/WaterTransport.h similarity index 100% rename from Cantera/src/transport/WaterTransport.h rename to include/cantera/transport/WaterTransport.h diff --git a/Cantera/src/zeroD/ConstPressureReactor.h b/include/cantera/zeroD/ConstPressureReactor.h similarity index 100% rename from Cantera/src/zeroD/ConstPressureReactor.h rename to include/cantera/zeroD/ConstPressureReactor.h diff --git a/Cantera/src/zeroD/FlowDevice.h b/include/cantera/zeroD/FlowDevice.h similarity index 100% rename from Cantera/src/zeroD/FlowDevice.h rename to include/cantera/zeroD/FlowDevice.h diff --git a/Cantera/src/zeroD/FlowReactor.h b/include/cantera/zeroD/FlowReactor.h similarity index 100% rename from Cantera/src/zeroD/FlowReactor.h rename to include/cantera/zeroD/FlowReactor.h diff --git a/Cantera/src/zeroD/PID_Controller.h b/include/cantera/zeroD/PID_Controller.h similarity index 100% rename from Cantera/src/zeroD/PID_Controller.h rename to include/cantera/zeroD/PID_Controller.h diff --git a/Cantera/src/zeroD/Reactor.h b/include/cantera/zeroD/Reactor.h similarity index 100% rename from Cantera/src/zeroD/Reactor.h rename to include/cantera/zeroD/Reactor.h diff --git a/Cantera/src/zeroD/ReactorBase.h b/include/cantera/zeroD/ReactorBase.h similarity index 100% rename from Cantera/src/zeroD/ReactorBase.h rename to include/cantera/zeroD/ReactorBase.h diff --git a/Cantera/src/zeroD/ReactorFactory.h b/include/cantera/zeroD/ReactorFactory.h similarity index 100% rename from Cantera/src/zeroD/ReactorFactory.h rename to include/cantera/zeroD/ReactorFactory.h diff --git a/Cantera/src/zeroD/ReactorNet.h b/include/cantera/zeroD/ReactorNet.h similarity index 100% rename from Cantera/src/zeroD/ReactorNet.h rename to include/cantera/zeroD/ReactorNet.h diff --git a/Cantera/src/zeroD/Reservoir.h b/include/cantera/zeroD/Reservoir.h similarity index 100% rename from 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src/clib/ctonedim.cpp diff --git a/Cantera/clib/src/ctonedim.h b/src/clib/ctonedim.h similarity index 100% rename from Cantera/clib/src/ctonedim.h rename to src/clib/ctonedim.h diff --git a/Cantera/clib/src/ctreactor.cpp b/src/clib/ctreactor.cpp similarity index 100% rename from Cantera/clib/src/ctreactor.cpp rename to src/clib/ctreactor.cpp diff --git a/Cantera/clib/src/ctreactor.h b/src/clib/ctreactor.h similarity index 100% rename from Cantera/clib/src/ctreactor.h rename to src/clib/ctreactor.h diff --git a/Cantera/clib/src/ctrpath.cpp b/src/clib/ctrpath.cpp similarity index 100% rename from Cantera/clib/src/ctrpath.cpp rename to src/clib/ctrpath.cpp diff --git a/Cantera/clib/src/ctrpath.h b/src/clib/ctrpath.h similarity index 100% rename from Cantera/clib/src/ctrpath.h rename to src/clib/ctrpath.h diff --git a/Cantera/clib/src/ctsurf.cpp b/src/clib/ctsurf.cpp similarity index 100% rename from Cantera/clib/src/ctsurf.cpp rename to src/clib/ctsurf.cpp diff --git a/Cantera/clib/src/ctsurf.h b/src/clib/ctsurf.h similarity index 100% rename from Cantera/clib/src/ctsurf.h rename to src/clib/ctsurf.h diff --git a/Cantera/clib/src/ctxml.cpp b/src/clib/ctxml.cpp similarity index 100% rename from Cantera/clib/src/ctxml.cpp rename to src/clib/ctxml.cpp diff --git a/Cantera/clib/src/ctxml.h b/src/clib/ctxml.h similarity index 100% rename from Cantera/clib/src/ctxml.h rename to src/clib/ctxml.h diff --git a/Cantera/src/converters/CKParser.cpp b/src/converters/CKParser.cpp similarity index 100% rename from Cantera/src/converters/CKParser.cpp rename to src/converters/CKParser.cpp diff --git a/Cantera/src/converters/CKParser.h b/src/converters/CKParser.h similarity index 100% rename from Cantera/src/converters/CKParser.h rename to src/converters/CKParser.h diff --git a/Cantera/src/converters/CKReader.cpp b/src/converters/CKReader.cpp similarity index 100% rename from Cantera/src/converters/CKReader.cpp rename to src/converters/CKReader.cpp diff --git a/Cantera/src/converters/CKReader.h b/src/converters/CKReader.h similarity index 100% rename from Cantera/src/converters/CKReader.h rename to src/converters/CKReader.h diff --git a/Cantera/src/converters/Constituent.h b/src/converters/Constituent.h similarity index 100% rename from Cantera/src/converters/Constituent.h rename to src/converters/Constituent.h diff --git a/Cantera/src/converters/Element.h b/src/converters/Element.h similarity index 100% rename from Cantera/src/converters/Element.h rename to src/converters/Element.h diff --git a/Cantera/src/converters/Makefile.am b/src/converters/Makefile.am similarity index 100% rename from Cantera/src/converters/Makefile.am rename to src/converters/Makefile.am diff --git a/Cantera/src/converters/NASA9Parser.cpp b/src/converters/NASA9Parser.cpp similarity index 100% rename from Cantera/src/converters/NASA9Parser.cpp rename to src/converters/NASA9Parser.cpp diff --git a/Cantera/src/converters/Reaction.cpp b/src/converters/Reaction.cpp similarity index 100% rename from Cantera/src/converters/Reaction.cpp rename to src/converters/Reaction.cpp diff --git a/Cantera/src/converters/Reaction.h b/src/converters/Reaction.h similarity index 100% rename from Cantera/src/converters/Reaction.h rename to src/converters/Reaction.h diff --git a/Cantera/src/converters/RxnSpecies.h b/src/converters/RxnSpecies.h similarity index 100% rename from Cantera/src/converters/RxnSpecies.h rename to src/converters/RxnSpecies.h diff --git a/Cantera/src/converters/Species.cpp b/src/converters/Species.cpp similarity index 100% rename from Cantera/src/converters/Species.cpp rename to src/converters/Species.cpp diff --git a/Cantera/src/converters/Species.h b/src/converters/Species.h similarity index 100% rename from Cantera/src/converters/Species.h rename to src/converters/Species.h diff --git a/Cantera/src/converters/atomicWeightDB.cpp b/src/converters/atomicWeightDB.cpp similarity index 100% rename from Cantera/src/converters/atomicWeightDB.cpp rename to src/converters/atomicWeightDB.cpp diff --git a/Cantera/src/converters/ck2ct.cpp b/src/converters/ck2ct.cpp similarity index 100% rename from Cantera/src/converters/ck2ct.cpp rename to src/converters/ck2ct.cpp diff --git a/Cantera/src/converters/ck2ct.h b/src/converters/ck2ct.h similarity index 100% rename from Cantera/src/converters/ck2ct.h rename to src/converters/ck2ct.h diff --git a/Cantera/src/converters/ckr_defs.h b/src/converters/ckr_defs.h similarity index 100% rename from Cantera/src/converters/ckr_defs.h rename to src/converters/ckr_defs.h diff --git a/Cantera/src/converters/ckr_utils.cpp b/src/converters/ckr_utils.cpp similarity index 100% rename from Cantera/src/converters/ckr_utils.cpp rename to src/converters/ckr_utils.cpp diff --git a/Cantera/src/converters/ckr_utils.h b/src/converters/ckr_utils.h similarity index 100% rename from Cantera/src/converters/ckr_utils.h rename to src/converters/ckr_utils.h diff --git a/Cantera/src/converters/newThermoReading.txt b/src/converters/newThermoReading.txt similarity index 100% rename from Cantera/src/converters/newThermoReading.txt rename to src/converters/newThermoReading.txt diff --git a/Cantera/src/converters/thermoFunctions.cpp b/src/converters/thermoFunctions.cpp similarity index 100% rename from Cantera/src/converters/thermoFunctions.cpp rename to src/converters/thermoFunctions.cpp diff --git a/Cantera/src/converters/thermoFunctions.h b/src/converters/thermoFunctions.h similarity index 100% rename from Cantera/src/converters/thermoFunctions.h rename to src/converters/thermoFunctions.h diff --git a/Cantera/src/converters/writelog.cpp b/src/converters/writelog.cpp similarity index 100% rename from Cantera/src/converters/writelog.cpp rename to src/converters/writelog.cpp diff --git a/Cantera/src/converters/writelog.h b/src/converters/writelog.h similarity index 100% rename from Cantera/src/converters/writelog.h rename to src/converters/writelog.h diff --git a/Cantera/cxx/SConscript b/src/cxx/SConscript similarity index 100% rename from Cantera/cxx/SConscript rename to src/cxx/SConscript diff --git a/Cantera/src/equil/BasisOptimize.cpp b/src/equil/BasisOptimize.cpp similarity index 100% rename from Cantera/src/equil/BasisOptimize.cpp rename to src/equil/BasisOptimize.cpp diff --git a/Cantera/src/equil/ChemEquil.cpp b/src/equil/ChemEquil.cpp similarity index 100% rename from Cantera/src/equil/ChemEquil.cpp rename to src/equil/ChemEquil.cpp diff --git a/Cantera/src/equil/Makefile.am b/src/equil/Makefile.am similarity index 100% rename from Cantera/src/equil/Makefile.am rename to src/equil/Makefile.am diff --git a/Cantera/src/equil/MultiPhase.cpp b/src/equil/MultiPhase.cpp similarity index 100% rename from Cantera/src/equil/MultiPhase.cpp rename to src/equil/MultiPhase.cpp diff --git a/Cantera/src/equil/MultiPhaseEquil.cpp b/src/equil/MultiPhaseEquil.cpp similarity index 100% rename from Cantera/src/equil/MultiPhaseEquil.cpp rename to src/equil/MultiPhaseEquil.cpp diff --git a/Cantera/src/equil/PropertyCalculator.h b/src/equil/PropertyCalculator.h similarity index 100% rename from Cantera/src/equil/PropertyCalculator.h rename to src/equil/PropertyCalculator.h diff --git a/Cantera/src/equil/equilibrate.cpp b/src/equil/equilibrate.cpp similarity index 100% rename from Cantera/src/equil/equilibrate.cpp rename to src/equil/equilibrate.cpp diff --git a/Cantera/src/equil/vcs_DoubleStarStar.cpp b/src/equil/vcs_DoubleStarStar.cpp similarity index 100% rename from Cantera/src/equil/vcs_DoubleStarStar.cpp rename to src/equil/vcs_DoubleStarStar.cpp diff --git a/Cantera/src/equil/vcs_DoubleStarStar.h b/src/equil/vcs_DoubleStarStar.h similarity index 100% rename from Cantera/src/equil/vcs_DoubleStarStar.h rename to src/equil/vcs_DoubleStarStar.h diff --git a/Cantera/src/equil/vcs_Exception.cpp b/src/equil/vcs_Exception.cpp similarity index 100% rename from Cantera/src/equil/vcs_Exception.cpp rename to src/equil/vcs_Exception.cpp diff --git a/Cantera/src/equil/vcs_Exception.h b/src/equil/vcs_Exception.h similarity index 100% rename from Cantera/src/equil/vcs_Exception.h rename to src/equil/vcs_Exception.h diff --git a/Cantera/src/equil/vcs_Gibbs.cpp b/src/equil/vcs_Gibbs.cpp similarity index 100% rename from Cantera/src/equil/vcs_Gibbs.cpp rename to src/equil/vcs_Gibbs.cpp diff --git a/Cantera/src/equil/vcs_IntStarStar.cpp b/src/equil/vcs_IntStarStar.cpp similarity index 100% rename from Cantera/src/equil/vcs_IntStarStar.cpp rename to src/equil/vcs_IntStarStar.cpp diff --git a/Cantera/src/equil/vcs_IntStarStar.h b/src/equil/vcs_IntStarStar.h similarity index 100% rename from Cantera/src/equil/vcs_IntStarStar.h rename to src/equil/vcs_IntStarStar.h diff --git a/Cantera/src/equil/vcs_MultiPhaseEquil.cpp b/src/equil/vcs_MultiPhaseEquil.cpp similarity index 100% rename from Cantera/src/equil/vcs_MultiPhaseEquil.cpp rename to src/equil/vcs_MultiPhaseEquil.cpp diff --git a/Cantera/src/equil/vcs_SpeciesProperties.cpp b/src/equil/vcs_SpeciesProperties.cpp similarity index 100% rename from Cantera/src/equil/vcs_SpeciesProperties.cpp rename to src/equil/vcs_SpeciesProperties.cpp diff --git a/Cantera/src/equil/vcs_SpeciesProperties.h b/src/equil/vcs_SpeciesProperties.h similarity index 100% rename from Cantera/src/equil/vcs_SpeciesProperties.h rename to src/equil/vcs_SpeciesProperties.h diff --git a/Cantera/src/equil/vcs_TP.cpp b/src/equil/vcs_TP.cpp similarity index 100% rename from Cantera/src/equil/vcs_TP.cpp rename to src/equil/vcs_TP.cpp diff --git a/Cantera/src/equil/vcs_VolPhase.cpp b/src/equil/vcs_VolPhase.cpp similarity index 100% rename from Cantera/src/equil/vcs_VolPhase.cpp rename to src/equil/vcs_VolPhase.cpp diff --git a/Cantera/src/equil/vcs_VolPhase.h b/src/equil/vcs_VolPhase.h similarity index 100% rename from Cantera/src/equil/vcs_VolPhase.h rename to src/equil/vcs_VolPhase.h diff --git a/Cantera/src/equil/vcs_dbocls.c b/src/equil/vcs_dbocls.c similarity index 100% rename from Cantera/src/equil/vcs_dbocls.c rename to src/equil/vcs_dbocls.c diff --git a/Cantera/src/equil/vcs_dbols.c b/src/equil/vcs_dbols.c similarity index 100% rename from Cantera/src/equil/vcs_dbols.c rename to src/equil/vcs_dbols.c diff --git a/Cantera/src/equil/vcs_dbolsm.c b/src/equil/vcs_dbolsm.c similarity index 100% rename from Cantera/src/equil/vcs_dbolsm.c rename to src/equil/vcs_dbolsm.c diff --git a/Cantera/src/equil/vcs_dmout.c b/src/equil/vcs_dmout.c similarity index 100% rename from Cantera/src/equil/vcs_dmout.c rename to src/equil/vcs_dmout.c diff --git a/Cantera/src/equil/vcs_dvout.c b/src/equil/vcs_dvout.c similarity index 100% rename from Cantera/src/equil/vcs_dvout.c rename to src/equil/vcs_dvout.c diff --git a/Cantera/src/equil/vcs_elem.cpp b/src/equil/vcs_elem.cpp similarity index 100% rename from Cantera/src/equil/vcs_elem.cpp rename to src/equil/vcs_elem.cpp diff --git a/Cantera/src/equil/vcs_elem_rearrange.cpp b/src/equil/vcs_elem_rearrange.cpp similarity index 100% rename from Cantera/src/equil/vcs_elem_rearrange.cpp rename to src/equil/vcs_elem_rearrange.cpp diff --git a/Cantera/src/equil/vcs_equilibrate.cpp b/src/equil/vcs_equilibrate.cpp similarity index 100% rename from Cantera/src/equil/vcs_equilibrate.cpp rename to src/equil/vcs_equilibrate.cpp diff --git a/Cantera/src/equil/vcs_inest.cpp b/src/equil/vcs_inest.cpp similarity index 100% rename from Cantera/src/equil/vcs_inest.cpp rename to src/equil/vcs_inest.cpp diff --git a/Cantera/src/equil/vcs_internal.h b/src/equil/vcs_internal.h similarity index 100% rename from Cantera/src/equil/vcs_internal.h rename to src/equil/vcs_internal.h diff --git a/Cantera/src/equil/vcs_ivout.c b/src/equil/vcs_ivout.c similarity index 100% rename from Cantera/src/equil/vcs_ivout.c rename to src/equil/vcs_ivout.c diff --git a/Cantera/src/equil/vcs_nondim.cpp b/src/equil/vcs_nondim.cpp similarity index 100% rename from Cantera/src/equil/vcs_nondim.cpp rename to src/equil/vcs_nondim.cpp diff --git a/Cantera/src/equil/vcs_phaseStability.cpp b/src/equil/vcs_phaseStability.cpp similarity index 100% rename from Cantera/src/equil/vcs_phaseStability.cpp rename to src/equil/vcs_phaseStability.cpp diff --git a/Cantera/src/equil/vcs_prep.cpp b/src/equil/vcs_prep.cpp similarity index 100% rename from Cantera/src/equil/vcs_prep.cpp rename to src/equil/vcs_prep.cpp diff --git a/Cantera/src/equil/vcs_prob.cpp b/src/equil/vcs_prob.cpp similarity index 100% rename from Cantera/src/equil/vcs_prob.cpp rename to src/equil/vcs_prob.cpp diff --git a/Cantera/src/equil/vcs_prob.h b/src/equil/vcs_prob.h similarity index 100% rename from Cantera/src/equil/vcs_prob.h rename to src/equil/vcs_prob.h diff --git a/Cantera/src/equil/vcs_rearrange.cpp b/src/equil/vcs_rearrange.cpp similarity index 100% rename from Cantera/src/equil/vcs_rearrange.cpp rename to src/equil/vcs_rearrange.cpp diff --git a/Cantera/src/equil/vcs_report.cpp b/src/equil/vcs_report.cpp similarity index 100% rename from Cantera/src/equil/vcs_report.cpp rename to src/equil/vcs_report.cpp diff --git a/Cantera/src/equil/vcs_root1d.cpp b/src/equil/vcs_root1d.cpp similarity index 100% rename from Cantera/src/equil/vcs_root1d.cpp rename to src/equil/vcs_root1d.cpp diff --git a/Cantera/src/equil/vcs_rxnadj.cpp b/src/equil/vcs_rxnadj.cpp similarity index 100% rename from Cantera/src/equil/vcs_rxnadj.cpp rename to src/equil/vcs_rxnadj.cpp diff --git a/Cantera/src/equil/vcs_setMolesLinProg.cpp b/src/equil/vcs_setMolesLinProg.cpp similarity index 100% rename from Cantera/src/equil/vcs_setMolesLinProg.cpp rename to src/equil/vcs_setMolesLinProg.cpp diff --git a/Cantera/src/equil/vcs_solve.cpp b/src/equil/vcs_solve.cpp similarity index 100% rename from Cantera/src/equil/vcs_solve.cpp rename to src/equil/vcs_solve.cpp diff --git a/Cantera/src/equil/vcs_solve.h b/src/equil/vcs_solve.h similarity index 100% rename from Cantera/src/equil/vcs_solve.h rename to src/equil/vcs_solve.h diff --git a/Cantera/src/equil/vcs_solve_TP.cpp b/src/equil/vcs_solve_TP.cpp similarity index 100% rename from Cantera/src/equil/vcs_solve_TP.cpp rename to src/equil/vcs_solve_TP.cpp diff --git a/Cantera/src/equil/vcs_solve_phaseStability.cpp b/src/equil/vcs_solve_phaseStability.cpp similarity index 100% rename from Cantera/src/equil/vcs_solve_phaseStability.cpp rename to src/equil/vcs_solve_phaseStability.cpp diff --git a/Cantera/src/equil/vcs_species_thermo.cpp b/src/equil/vcs_species_thermo.cpp similarity index 100% rename from Cantera/src/equil/vcs_species_thermo.cpp rename to src/equil/vcs_species_thermo.cpp diff --git a/Cantera/src/equil/vcs_species_thermo.h b/src/equil/vcs_species_thermo.h similarity index 100% rename from Cantera/src/equil/vcs_species_thermo.h rename to src/equil/vcs_species_thermo.h diff --git a/Cantera/src/equil/vcs_util.cpp b/src/equil/vcs_util.cpp similarity index 100% rename from Cantera/src/equil/vcs_util.cpp rename to src/equil/vcs_util.cpp diff --git a/Cantera/src/equil/vcs_xerror.c b/src/equil/vcs_xerror.c similarity index 100% rename from Cantera/src/equil/vcs_xerror.c rename to src/equil/vcs_xerror.c diff --git a/Cantera/fortran/SConscript b/src/fortran/SConscript similarity index 100% rename from Cantera/fortran/SConscript rename to src/fortran/SConscript diff --git a/Cantera/fortran/src/cantera.f90 b/src/fortran/cantera.f90 similarity index 100% rename from Cantera/fortran/src/cantera.f90 rename to src/fortran/cantera.f90 diff --git a/Cantera/fortran/src/cantera_funcs.f90 b/src/fortran/cantera_funcs.f90 similarity index 100% rename from Cantera/fortran/src/cantera_funcs.f90 rename to src/fortran/cantera_funcs.f90 diff --git a/Cantera/fortran/src/cantera_iface.f90 b/src/fortran/cantera_iface.f90 similarity index 100% rename from Cantera/fortran/src/cantera_iface.f90 rename to src/fortran/cantera_iface.f90 diff --git a/Cantera/fortran/src/cantera_kinetics.f90 b/src/fortran/cantera_kinetics.f90 similarity index 100% rename from Cantera/fortran/src/cantera_kinetics.f90 rename to src/fortran/cantera_kinetics.f90 diff --git a/Cantera/fortran/src/cantera_thermo.f90 b/src/fortran/cantera_thermo.f90 similarity index 100% rename from Cantera/fortran/src/cantera_thermo.f90 rename to src/fortran/cantera_thermo.f90 diff --git a/Cantera/fortran/src/cantera_transport.f90 b/src/fortran/cantera_transport.f90 similarity index 100% rename from Cantera/fortran/src/cantera_transport.f90 rename to src/fortran/cantera_transport.f90 diff --git a/Cantera/fortran/src/cantera_xml.f90 b/src/fortran/cantera_xml.f90 similarity index 100% rename from Cantera/fortran/src/cantera_xml.f90 rename to src/fortran/cantera_xml.f90 diff --git a/Cantera/fortran/src/fct.cpp b/src/fortran/fct.cpp similarity index 100% rename from Cantera/fortran/src/fct.cpp rename to src/fortran/fct.cpp diff --git a/Cantera/fortran/src/fct_interface.f90 b/src/fortran/fct_interface.f90 similarity index 100% rename from Cantera/fortran/src/fct_interface.f90 rename to 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a/Cantera/src/thermo/MixtureFugacityTP.cpp b/src/thermo/MixtureFugacityTP.cpp similarity index 100% rename from Cantera/src/thermo/MixtureFugacityTP.cpp rename to src/thermo/MixtureFugacityTP.cpp diff --git a/Cantera/src/thermo/MolalityVPSSTP.cpp b/src/thermo/MolalityVPSSTP.cpp similarity index 100% rename from Cantera/src/thermo/MolalityVPSSTP.cpp rename to src/thermo/MolalityVPSSTP.cpp diff --git a/Cantera/src/thermo/MolarityIonicVPSSTP.cpp b/src/thermo/MolarityIonicVPSSTP.cpp similarity index 100% rename from Cantera/src/thermo/MolarityIonicVPSSTP.cpp rename to src/thermo/MolarityIonicVPSSTP.cpp diff --git a/Cantera/src/thermo/Mu0Poly.cpp b/src/thermo/Mu0Poly.cpp similarity index 100% rename from Cantera/src/thermo/Mu0Poly.cpp rename to src/thermo/Mu0Poly.cpp diff --git a/Cantera/src/thermo/Mu0Poly.h b/src/thermo/Mu0Poly.h similarity index 100% rename from Cantera/src/thermo/Mu0Poly.h rename to src/thermo/Mu0Poly.h diff --git a/Cantera/src/thermo/Nasa9Poly1.cpp b/src/thermo/Nasa9Poly1.cpp similarity index 100% rename from Cantera/src/thermo/Nasa9Poly1.cpp rename to src/thermo/Nasa9Poly1.cpp diff --git a/Cantera/src/thermo/Nasa9PolyMultiTempRegion.cpp b/src/thermo/Nasa9PolyMultiTempRegion.cpp similarity index 100% rename from Cantera/src/thermo/Nasa9PolyMultiTempRegion.cpp rename to src/thermo/Nasa9PolyMultiTempRegion.cpp diff --git a/Cantera/src/thermo/Nasa9PolyMultiTempRegion.h b/src/thermo/Nasa9PolyMultiTempRegion.h similarity index 100% rename from Cantera/src/thermo/Nasa9PolyMultiTempRegion.h rename to src/thermo/Nasa9PolyMultiTempRegion.h diff --git a/Cantera/src/thermo/NasaPoly2.h b/src/thermo/NasaPoly2.h similarity index 100% rename from Cantera/src/thermo/NasaPoly2.h rename to src/thermo/NasaPoly2.h diff --git a/Cantera/src/thermo/NasaThermo.h b/src/thermo/NasaThermo.h similarity index 100% rename from Cantera/src/thermo/NasaThermo.h rename to src/thermo/NasaThermo.h diff --git a/Cantera/src/thermo/PDSS.cpp b/src/thermo/PDSS.cpp similarity index 100% rename from Cantera/src/thermo/PDSS.cpp rename to src/thermo/PDSS.cpp diff --git a/Cantera/src/thermo/PDSS_ConstVol.cpp b/src/thermo/PDSS_ConstVol.cpp similarity index 100% rename from Cantera/src/thermo/PDSS_ConstVol.cpp rename to src/thermo/PDSS_ConstVol.cpp diff --git a/Cantera/src/thermo/PDSS_HKFT.cpp b/src/thermo/PDSS_HKFT.cpp similarity index 100% rename from Cantera/src/thermo/PDSS_HKFT.cpp rename to src/thermo/PDSS_HKFT.cpp diff --git a/Cantera/src/thermo/PDSS_IdealGas.cpp b/src/thermo/PDSS_IdealGas.cpp similarity index 100% rename from Cantera/src/thermo/PDSS_IdealGas.cpp rename to src/thermo/PDSS_IdealGas.cpp diff --git a/Cantera/src/thermo/PDSS_IonsFromNeutral.cpp b/src/thermo/PDSS_IonsFromNeutral.cpp similarity index 100% rename from Cantera/src/thermo/PDSS_IonsFromNeutral.cpp rename to src/thermo/PDSS_IonsFromNeutral.cpp diff --git a/Cantera/src/thermo/PDSS_SSVol.cpp b/src/thermo/PDSS_SSVol.cpp similarity index 100% rename from Cantera/src/thermo/PDSS_SSVol.cpp rename to src/thermo/PDSS_SSVol.cpp diff --git a/Cantera/src/thermo/PDSS_Water.cpp b/src/thermo/PDSS_Water.cpp similarity index 100% rename from Cantera/src/thermo/PDSS_Water.cpp rename to src/thermo/PDSS_Water.cpp diff --git a/Cantera/src/thermo/Phase.cpp b/src/thermo/Phase.cpp similarity index 100% rename from Cantera/src/thermo/Phase.cpp rename to src/thermo/Phase.cpp diff --git a/Cantera/src/thermo/PhaseCombo_Interaction.cpp b/src/thermo/PhaseCombo_Interaction.cpp similarity index 100% rename from Cantera/src/thermo/PhaseCombo_Interaction.cpp rename to src/thermo/PhaseCombo_Interaction.cpp diff --git a/Cantera/src/thermo/PseudoBinaryVPSSTP.cpp b/src/thermo/PseudoBinaryVPSSTP.cpp similarity index 100% rename from Cantera/src/thermo/PseudoBinaryVPSSTP.cpp rename to src/thermo/PseudoBinaryVPSSTP.cpp diff --git a/Cantera/src/thermo/PureFluidPhase.cpp b/src/thermo/PureFluidPhase.cpp similarity index 100% rename from Cantera/src/thermo/PureFluidPhase.cpp rename to src/thermo/PureFluidPhase.cpp diff --git a/Cantera/src/thermo/RedlichKisterVPSSTP.cpp b/src/thermo/RedlichKisterVPSSTP.cpp similarity index 100% rename from Cantera/src/thermo/RedlichKisterVPSSTP.cpp rename to src/thermo/RedlichKisterVPSSTP.cpp diff --git a/Cantera/src/thermo/RedlichKisterVPSSTP.h b/src/thermo/RedlichKisterVPSSTP.h similarity index 100% rename from Cantera/src/thermo/RedlichKisterVPSSTP.h rename to src/thermo/RedlichKisterVPSSTP.h diff --git a/Cantera/src/thermo/RedlichKwongMFTP.cpp b/src/thermo/RedlichKwongMFTP.cpp similarity index 100% rename from Cantera/src/thermo/RedlichKwongMFTP.cpp rename to src/thermo/RedlichKwongMFTP.cpp diff --git a/Cantera/src/thermo/SemiconductorPhase.cpp b/src/thermo/SemiconductorPhase.cpp similarity index 100% rename from Cantera/src/thermo/SemiconductorPhase.cpp rename to src/thermo/SemiconductorPhase.cpp diff --git a/Cantera/src/thermo/ShomatePoly.h b/src/thermo/ShomatePoly.h similarity index 100% rename from Cantera/src/thermo/ShomatePoly.h rename to src/thermo/ShomatePoly.h diff --git a/Cantera/src/thermo/ShomateThermo.h b/src/thermo/ShomateThermo.h similarity index 100% rename from Cantera/src/thermo/ShomateThermo.h rename to src/thermo/ShomateThermo.h diff --git a/Cantera/src/thermo/SingleSpeciesTP.cpp b/src/thermo/SingleSpeciesTP.cpp similarity index 100% rename from Cantera/src/thermo/SingleSpeciesTP.cpp rename to src/thermo/SingleSpeciesTP.cpp diff --git a/Cantera/src/thermo/SpeciesThermoFactory.cpp b/src/thermo/SpeciesThermoFactory.cpp similarity index 100% rename from Cantera/src/thermo/SpeciesThermoFactory.cpp rename to src/thermo/SpeciesThermoFactory.cpp diff --git a/Cantera/src/thermo/SpeciesThermoInterpType.cpp b/src/thermo/SpeciesThermoInterpType.cpp similarity index 100% rename from Cantera/src/thermo/SpeciesThermoInterpType.cpp rename to src/thermo/SpeciesThermoInterpType.cpp diff --git a/Cantera/src/thermo/State.cpp b/src/thermo/State.cpp similarity index 100% rename from Cantera/src/thermo/State.cpp rename to src/thermo/State.cpp diff --git a/Cantera/src/thermo/StoichSubstance.cpp b/src/thermo/StoichSubstance.cpp similarity index 100% rename from Cantera/src/thermo/StoichSubstance.cpp rename to src/thermo/StoichSubstance.cpp diff --git a/Cantera/src/thermo/StoichSubstanceSSTP.cpp b/src/thermo/StoichSubstanceSSTP.cpp similarity index 100% rename from Cantera/src/thermo/StoichSubstanceSSTP.cpp rename to src/thermo/StoichSubstanceSSTP.cpp diff --git a/Cantera/src/thermo/SurfPhase.cpp b/src/thermo/SurfPhase.cpp similarity index 100% rename from Cantera/src/thermo/SurfPhase.cpp rename to src/thermo/SurfPhase.cpp diff --git a/Cantera/src/thermo/ThermoFactory.cpp b/src/thermo/ThermoFactory.cpp similarity index 100% rename from Cantera/src/thermo/ThermoFactory.cpp rename to src/thermo/ThermoFactory.cpp diff --git a/Cantera/src/thermo/ThermoPhase.cpp b/src/thermo/ThermoPhase.cpp similarity index 100% rename from Cantera/src/thermo/ThermoPhase.cpp rename to src/thermo/ThermoPhase.cpp diff --git a/Cantera/src/thermo/VPSSMgr.cpp b/src/thermo/VPSSMgr.cpp similarity index 100% rename from Cantera/src/thermo/VPSSMgr.cpp rename to src/thermo/VPSSMgr.cpp diff --git a/Cantera/src/thermo/VPSSMgrFactory.cpp b/src/thermo/VPSSMgrFactory.cpp similarity index 100% rename from Cantera/src/thermo/VPSSMgrFactory.cpp rename to src/thermo/VPSSMgrFactory.cpp diff --git a/Cantera/src/thermo/VPSSMgrFactory.h b/src/thermo/VPSSMgrFactory.h similarity index 100% rename from Cantera/src/thermo/VPSSMgrFactory.h rename to src/thermo/VPSSMgrFactory.h diff --git a/Cantera/src/thermo/VPSSMgr_ConstVol.cpp b/src/thermo/VPSSMgr_ConstVol.cpp similarity index 100% rename from Cantera/src/thermo/VPSSMgr_ConstVol.cpp rename to src/thermo/VPSSMgr_ConstVol.cpp diff --git a/Cantera/src/thermo/VPSSMgr_General.cpp b/src/thermo/VPSSMgr_General.cpp similarity index 100% rename from Cantera/src/thermo/VPSSMgr_General.cpp rename to src/thermo/VPSSMgr_General.cpp diff --git a/Cantera/src/thermo/VPSSMgr_IdealGas.cpp b/src/thermo/VPSSMgr_IdealGas.cpp similarity index 100% rename from Cantera/src/thermo/VPSSMgr_IdealGas.cpp rename to src/thermo/VPSSMgr_IdealGas.cpp diff --git a/Cantera/src/thermo/VPSSMgr_Water_ConstVol.cpp b/src/thermo/VPSSMgr_Water_ConstVol.cpp similarity index 100% rename from Cantera/src/thermo/VPSSMgr_Water_ConstVol.cpp rename to src/thermo/VPSSMgr_Water_ConstVol.cpp diff --git a/Cantera/src/thermo/VPSSMgr_Water_HKFT.cpp b/src/thermo/VPSSMgr_Water_HKFT.cpp similarity index 100% rename from Cantera/src/thermo/VPSSMgr_Water_HKFT.cpp rename to src/thermo/VPSSMgr_Water_HKFT.cpp diff --git a/Cantera/src/thermo/VPStandardStateTP.cpp b/src/thermo/VPStandardStateTP.cpp similarity index 100% rename from Cantera/src/thermo/VPStandardStateTP.cpp rename to src/thermo/VPStandardStateTP.cpp diff --git a/Cantera/src/thermo/WaterProps.cpp b/src/thermo/WaterProps.cpp similarity index 100% rename from Cantera/src/thermo/WaterProps.cpp rename to src/thermo/WaterProps.cpp diff --git a/Cantera/src/thermo/WaterPropsIAPWS.cpp b/src/thermo/WaterPropsIAPWS.cpp similarity index 100% rename from Cantera/src/thermo/WaterPropsIAPWS.cpp rename to src/thermo/WaterPropsIAPWS.cpp diff --git a/Cantera/src/thermo/WaterPropsIAPWSphi.cpp b/src/thermo/WaterPropsIAPWSphi.cpp similarity index 100% rename from Cantera/src/thermo/WaterPropsIAPWSphi.cpp rename to src/thermo/WaterPropsIAPWSphi.cpp diff --git a/Cantera/src/thermo/WaterSSTP.cpp b/src/thermo/WaterSSTP.cpp similarity index 100% rename from Cantera/src/thermo/WaterSSTP.cpp rename to src/thermo/WaterSSTP.cpp diff --git a/Cantera/src/thermo/phasereport.cpp b/src/thermo/phasereport.cpp similarity index 100% rename from Cantera/src/thermo/phasereport.cpp rename to src/thermo/phasereport.cpp diff --git a/ext/tpx/CarbonDioxide.cpp b/src/tpx/CarbonDioxide.cpp similarity index 100% rename from ext/tpx/CarbonDioxide.cpp rename to src/tpx/CarbonDioxide.cpp diff --git a/ext/tpx/CarbonDioxide.h b/src/tpx/CarbonDioxide.h similarity index 100% rename from ext/tpx/CarbonDioxide.h rename to src/tpx/CarbonDioxide.h diff --git a/ext/tpx/HFC134a.cpp b/src/tpx/HFC134a.cpp similarity index 100% rename from ext/tpx/HFC134a.cpp rename to src/tpx/HFC134a.cpp diff --git a/ext/tpx/HFC134a.h b/src/tpx/HFC134a.h similarity index 100% rename from ext/tpx/HFC134a.h rename to src/tpx/HFC134a.h diff --git a/ext/tpx/Heptane.cpp b/src/tpx/Heptane.cpp similarity index 100% rename from ext/tpx/Heptane.cpp rename to src/tpx/Heptane.cpp diff --git a/ext/tpx/Heptane.h b/src/tpx/Heptane.h similarity index 100% rename from ext/tpx/Heptane.h rename to src/tpx/Heptane.h diff --git a/ext/tpx/Hydrogen.cpp b/src/tpx/Hydrogen.cpp similarity index 100% rename from ext/tpx/Hydrogen.cpp rename to src/tpx/Hydrogen.cpp diff --git a/ext/tpx/Hydrogen.h b/src/tpx/Hydrogen.h similarity index 100% rename from ext/tpx/Hydrogen.h rename to src/tpx/Hydrogen.h diff --git a/ext/tpx/Makefile.am b/src/tpx/Makefile.am similarity index 100% rename from ext/tpx/Makefile.am rename to src/tpx/Makefile.am diff --git a/ext/tpx/Methane.cpp b/src/tpx/Methane.cpp similarity index 100% rename from ext/tpx/Methane.cpp rename to src/tpx/Methane.cpp diff --git a/ext/tpx/Methane.h b/src/tpx/Methane.h similarity index 100% rename from ext/tpx/Methane.h rename to src/tpx/Methane.h diff --git a/ext/tpx/Nitrogen.cpp b/src/tpx/Nitrogen.cpp similarity index 100% rename from ext/tpx/Nitrogen.cpp rename to src/tpx/Nitrogen.cpp diff --git a/ext/tpx/Nitrogen.h b/src/tpx/Nitrogen.h similarity index 100% rename from ext/tpx/Nitrogen.h rename to src/tpx/Nitrogen.h diff --git a/ext/tpx/Oxygen.cpp b/src/tpx/Oxygen.cpp similarity index 100% rename from ext/tpx/Oxygen.cpp rename to src/tpx/Oxygen.cpp diff --git a/ext/tpx/Oxygen.h b/src/tpx/Oxygen.h similarity index 100% rename from ext/tpx/Oxygen.h rename to src/tpx/Oxygen.h diff --git a/ext/tpx/RedlichKwong.cpp b/src/tpx/RedlichKwong.cpp similarity index 100% rename from ext/tpx/RedlichKwong.cpp rename to src/tpx/RedlichKwong.cpp diff --git a/ext/tpx/RedlichKwong.h b/src/tpx/RedlichKwong.h similarity index 100% rename from ext/tpx/RedlichKwong.h rename to src/tpx/RedlichKwong.h diff --git a/ext/tpx/Sub.cpp b/src/tpx/Sub.cpp similarity index 100% rename from ext/tpx/Sub.cpp rename to src/tpx/Sub.cpp diff --git a/ext/tpx/Water.cpp b/src/tpx/Water.cpp similarity index 100% rename from ext/tpx/Water.cpp rename to src/tpx/Water.cpp diff --git a/ext/tpx/Water.h b/src/tpx/Water.h similarity index 100% rename from ext/tpx/Water.h rename to src/tpx/Water.h diff --git a/ext/tpx/lk.cpp b/src/tpx/lk.cpp similarity index 100% rename from ext/tpx/lk.cpp rename to src/tpx/lk.cpp diff --git a/ext/tpx/lk.h b/src/tpx/lk.h similarity index 100% rename from ext/tpx/lk.h rename to src/tpx/lk.h diff --git a/ext/tpx/mix.h b/src/tpx/mix.h similarity index 100% rename from ext/tpx/mix.h rename to src/tpx/mix.h diff --git a/ext/tpx/subs.h b/src/tpx/subs.h similarity index 100% rename from ext/tpx/subs.h rename to src/tpx/subs.h diff --git a/ext/tpx/utils.cpp b/src/tpx/utils.cpp similarity index 100% rename from ext/tpx/utils.cpp rename to src/tpx/utils.cpp diff --git a/Cantera/src/transport/AqueousTransport.cpp b/src/transport/AqueousTransport.cpp similarity index 100% rename from Cantera/src/transport/AqueousTransport.cpp rename to src/transport/AqueousTransport.cpp diff --git a/Cantera/src/transport/DustyGasTransport.cpp b/src/transport/DustyGasTransport.cpp similarity index 100% rename from Cantera/src/transport/DustyGasTransport.cpp rename to src/transport/DustyGasTransport.cpp diff --git a/Cantera/src/transport/FtnTransport.h b/src/transport/FtnTransport.h similarity index 100% rename from Cantera/src/transport/FtnTransport.h rename to src/transport/FtnTransport.h diff --git a/Cantera/src/transport/LTPspecies.cpp b/src/transport/LTPspecies.cpp similarity index 100% rename from Cantera/src/transport/LTPspecies.cpp rename to src/transport/LTPspecies.cpp diff --git a/Cantera/src/transport/L_matrix.h b/src/transport/L_matrix.h similarity index 100% rename from Cantera/src/transport/L_matrix.h rename to src/transport/L_matrix.h diff --git a/Cantera/src/transport/LiquidTranInteraction.cpp b/src/transport/LiquidTranInteraction.cpp similarity index 100% rename from Cantera/src/transport/LiquidTranInteraction.cpp rename to src/transport/LiquidTranInteraction.cpp diff --git a/Cantera/src/transport/LiquidTransport.cpp b/src/transport/LiquidTransport.cpp similarity index 100% rename from Cantera/src/transport/LiquidTransport.cpp rename to src/transport/LiquidTransport.cpp diff --git a/Cantera/src/transport/LiquidTransportData.cpp b/src/transport/LiquidTransportData.cpp similarity index 100% rename from Cantera/src/transport/LiquidTransportData.cpp rename to src/transport/LiquidTransportData.cpp diff --git a/Cantera/src/transport/LiquidTransportParams.cpp b/src/transport/LiquidTransportParams.cpp similarity index 100% rename from Cantera/src/transport/LiquidTransportParams.cpp rename to src/transport/LiquidTransportParams.cpp diff --git a/Cantera/src/transport/MMCollisionInt.cpp b/src/transport/MMCollisionInt.cpp similarity index 100% rename from Cantera/src/transport/MMCollisionInt.cpp rename to src/transport/MMCollisionInt.cpp diff --git a/Cantera/src/transport/MMCollisionInt.h b/src/transport/MMCollisionInt.h similarity index 100% rename from Cantera/src/transport/MMCollisionInt.h rename to src/transport/MMCollisionInt.h diff --git a/Cantera/src/transport/Makefile.am b/src/transport/Makefile.am similarity index 100% rename from Cantera/src/transport/Makefile.am rename to src/transport/Makefile.am diff --git a/Cantera/src/transport/MixTransport.cpp b/src/transport/MixTransport.cpp similarity index 100% rename from Cantera/src/transport/MixTransport.cpp rename to src/transport/MixTransport.cpp diff --git a/Cantera/src/transport/MultiTransport.cpp b/src/transport/MultiTransport.cpp similarity index 100% rename from Cantera/src/transport/MultiTransport.cpp rename to src/transport/MultiTransport.cpp diff --git a/Cantera/src/transport/SimpleTransport.cpp b/src/transport/SimpleTransport.cpp similarity index 100% rename from Cantera/src/transport/SimpleTransport.cpp rename to src/transport/SimpleTransport.cpp diff --git a/Cantera/src/transport/SolidTransport.cpp b/src/transport/SolidTransport.cpp similarity index 100% rename from Cantera/src/transport/SolidTransport.cpp rename to src/transport/SolidTransport.cpp diff --git a/Cantera/src/transport/Tortuosity.h b/src/transport/Tortuosity.h similarity index 100% rename from Cantera/src/transport/Tortuosity.h rename to src/transport/Tortuosity.h diff --git a/Cantera/src/transport/TortuosityBase.cpp b/src/transport/TortuosityBase.cpp similarity index 100% rename from Cantera/src/transport/TortuosityBase.cpp rename to src/transport/TortuosityBase.cpp diff --git a/Cantera/src/transport/TortuosityBase.h b/src/transport/TortuosityBase.h similarity index 100% rename from Cantera/src/transport/TortuosityBase.h rename to src/transport/TortuosityBase.h diff --git a/Cantera/src/transport/TortuosityBruggeman.cpp b/src/transport/TortuosityBruggeman.cpp similarity index 100% rename from Cantera/src/transport/TortuosityBruggeman.cpp rename to src/transport/TortuosityBruggeman.cpp diff --git a/Cantera/src/transport/TortuosityBruggeman.h b/src/transport/TortuosityBruggeman.h similarity index 100% rename from Cantera/src/transport/TortuosityBruggeman.h rename to src/transport/TortuosityBruggeman.h diff --git a/Cantera/src/transport/TortuosityMaxwell.cpp b/src/transport/TortuosityMaxwell.cpp similarity index 100% rename from Cantera/src/transport/TortuosityMaxwell.cpp rename to src/transport/TortuosityMaxwell.cpp diff --git a/Cantera/src/transport/TortuosityMaxwell.h b/src/transport/TortuosityMaxwell.h similarity index 100% rename from Cantera/src/transport/TortuosityMaxwell.h rename to src/transport/TortuosityMaxwell.h diff --git a/Cantera/src/transport/TortuosityPercolation.cpp b/src/transport/TortuosityPercolation.cpp similarity index 100% rename from Cantera/src/transport/TortuosityPercolation.cpp rename to src/transport/TortuosityPercolation.cpp diff --git a/Cantera/src/transport/TortuosityPercolation.h b/src/transport/TortuosityPercolation.h similarity index 100% rename from Cantera/src/transport/TortuosityPercolation.h rename to src/transport/TortuosityPercolation.h diff --git a/Cantera/src/transport/TransportBase.cpp b/src/transport/TransportBase.cpp similarity index 100% rename from Cantera/src/transport/TransportBase.cpp rename to src/transport/TransportBase.cpp diff --git a/Cantera/src/transport/TransportFactory.cpp b/src/transport/TransportFactory.cpp similarity index 100% rename from Cantera/src/transport/TransportFactory.cpp rename to src/transport/TransportFactory.cpp diff --git a/Cantera/src/transport/TransportParams.cpp b/src/transport/TransportParams.cpp similarity index 100% rename from Cantera/src/transport/TransportParams.cpp rename to src/transport/TransportParams.cpp diff --git a/Cantera/src/transport/WaterTransport.cpp b/src/transport/WaterTransport.cpp similarity index 100% rename from Cantera/src/transport/WaterTransport.cpp rename to src/transport/WaterTransport.cpp diff --git a/Cantera/src/zeroD/ConstPressureReactor.cpp b/src/zeroD/ConstPressureReactor.cpp similarity index 100% rename from Cantera/src/zeroD/ConstPressureReactor.cpp rename to src/zeroD/ConstPressureReactor.cpp diff --git a/Cantera/src/zeroD/FlowDevice.cpp b/src/zeroD/FlowDevice.cpp similarity index 100% rename from Cantera/src/zeroD/FlowDevice.cpp rename to src/zeroD/FlowDevice.cpp diff --git a/Cantera/src/zeroD/FlowReactor.cpp b/src/zeroD/FlowReactor.cpp similarity index 100% rename from Cantera/src/zeroD/FlowReactor.cpp rename to src/zeroD/FlowReactor.cpp diff --git a/Cantera/src/zeroD/Makefile.am b/src/zeroD/Makefile.am similarity index 100% rename from Cantera/src/zeroD/Makefile.am rename to src/zeroD/Makefile.am diff --git a/Cantera/src/zeroD/Reactor.cpp b/src/zeroD/Reactor.cpp similarity index 100% rename from Cantera/src/zeroD/Reactor.cpp rename to src/zeroD/Reactor.cpp diff --git a/Cantera/src/zeroD/ReactorBase.cpp b/src/zeroD/ReactorBase.cpp similarity index 100% rename from Cantera/src/zeroD/ReactorBase.cpp rename to src/zeroD/ReactorBase.cpp diff --git a/Cantera/src/zeroD/ReactorFactory.cpp b/src/zeroD/ReactorFactory.cpp similarity index 100% rename from Cantera/src/zeroD/ReactorFactory.cpp rename to src/zeroD/ReactorFactory.cpp diff --git a/Cantera/src/zeroD/ReactorNet.cpp b/src/zeroD/ReactorNet.cpp similarity index 100% rename from Cantera/src/zeroD/ReactorNet.cpp rename to src/zeroD/ReactorNet.cpp diff --git a/Cantera/src/zeroD/Wall.cpp b/src/zeroD/Wall.cpp similarity index 100% rename from Cantera/src/zeroD/Wall.cpp rename to src/zeroD/Wall.cpp diff --git a/tools/Makefile.am b/tools/Makefile.am deleted file mode 100644 index 5cd375fe0..000000000 --- a/tools/Makefile.am +++ /dev/null @@ -1 +0,0 @@ -SUBDIRS = testtools \ No newline at end of file diff --git a/tools/ctnew.in b/tools/ctnew.in deleted file mode 100644 index de2be4a17..000000000 --- a/tools/ctnew.in +++ /dev/null @@ -1,9 +0,0 @@ -#!/bin/sh - -if test "x$1" = "x-f77"; then - cp @ct_templdir@/f77/*.* . -elif test "x$1" = "x-f90"; then - cp @ct_templdir@/f90/*.* . -else - cp @ct_templdir@/cxx/*.* . -fi diff --git a/tools/templates/f77/demo_ftnlib.cpp b/tools/templates/f77/demo_ftnlib.cpp deleted file mode 100644 index 90453f99e..000000000 --- a/tools/templates/f77/demo_ftnlib.cpp +++ /dev/null @@ -1,412 +0,0 @@ -/*! - A simple Fortran 77 interface - - This file is an example of how to write an interface to use Cantera - in Fortran 77 programs. The basic idea is to store pointers to - Cantera objects in global storage, and then create Fortran-callable - functions that access the objects through the pointers. - - This particular example defines functions that return thermodynamic - properties, transport properties, and kinetic rates for reacting - ideal gas mixtures. Only a single pointer to an IdealGasMix object is - stored, so only one reaction mechanism may be used at any one time in - the application. Of course, it is a simple modification to store - multiple objects if it is desired to use multiple reaction - mechanisms. - - The functions defined here are ones commonly needed in application - programs that simulate gas-phase combustion or similar - processes. Similar libraries to access other capabilities of Cantera - (surface chemistry, etc.) could be written in the same way. - - This library is designed for Fortran compilers that expect external - procedure na,es to be lowercase with a trailing underscore. If this - is not the case, the procedure names must be edited before use. - - */ - -// add any other Cantera header files you need here -#include -#include - -using namespace Cantera; - -// store a pointer to an IdealGasMix object -static IdealGasMix* _gas = 0; - -// provides access to the pointers for functions in other libraries -IdealGasMix* _gasptr() -{ - return _gas; -} - -// comment these out to produce a smaller executable if not needed -#define WITH_EQUIL -#define WITH_TRANSPORT - -#ifdef WITH_EQUIL -#include -#endif - - -#ifdef WITH_TRANSPORT -#include - -// store a pointer to a transport manager -static Transport* _trans = 0; -Transport* _transptr() -{ - return _trans; -} -#endif - -// error handler -void handleError() -{ - showErrors(cout); - exit(-1); -} - -// extern "C" turns off C++ name-mangling, so that the procedure names -// in the object file are exactly as shown here. - -extern "C" { - - /// This is the Fortran main program. This works for g77; it may - /// need to be modified for other Fortran compilers -#ifdef NEED_ALT_MAIN - extern int MAIN__(); -#endif - - /** - * Read in a reaction mechanism file and create an IdealGasMix - * object. The file may be in Cantera input format or in CTML. (If - * you have a file in Chemkin-compatible format, use utility - * program ck2cti first to convert it into Cantera format.) - */ - void newidealgasmix_(char* file, char* id, char* transport, - ftnlen lenfile, ftnlen lenid, ftnlen lentr) - { - string trmodel = ""; - try { - string fin = string(file, lenfile); - string fth = string(id, lenid); - trmodel = string(transport, lentr); - if (_gas) { - delete _gas; - } - _gas = new IdealGasMix(fin, fth); - } catch (CanteraError) { - handleError(); - } -#ifdef WITH_TRANSPORT - try { - if (_trans) { - delete _trans; - } - _trans = newTransportMgr(trmodel,_gas,1); - } catch (CanteraError) { - _trans = newTransportMgr("",_gas,1); - } -#endif - } - - /// integer function nElements() - integer nelements_() - { - return _gas->nElements(); - } - - /// integer function nSpecies() - integer nspecies_() - { - return _gas->nSpecies(); - } - - /// integer function nReactions() - integer nreactions_() - { - return _gas->nReactions(); - } - - void getspeciesname_(integer* k, char* name, ftnlen n) - { - int ik = *k - 1; - fill(name, name + n, ' '); - string spnm = _gas->speciesName(ik); - int ns = spnm.size(); - unsigned int nmx = (ns > n ? n : ns); - copy(spnm.begin(), spnm.begin()+nmx, name); - } - - //-------------- setting the state ---------------------------- - - /// subroutine setState_TPX(T, P, X) - void setstate_tpx_(doublereal* T, doublereal* P, doublereal* X) - { - try { - _gas->setState_TPX(*T, *P, X); - } catch (CanteraError) { - handleError(); - } - } - - /// subroutine setState_TPX_String(T, P, X) - void setstate_tpx_string_(doublereal* T, doublereal* P, - char* X, ftnlen lenx) - { - try { - _gas->setState_TPX(*T, *P, string(X, lenx)); - } catch (CanteraError) { - handleError(); - } - } - - void setstate_try_(doublereal* T, doublereal* rho, doublereal* Y) - { - try { - _gas->setState_TRY(*T, *rho, Y); - } catch (CanteraError) { - handleError(); - } - } - - void setstate_tpy_(doublereal* T, doublereal* p, doublereal* Y) - { - try { - _gas->setState_TPY(*T, *p, Y); - } catch (CanteraError) { - handleError(); - } - } - - void setstate_sp_(doublereal* s, doublereal* p) - { - try { - _gas->setState_SP(*s, *p); - } catch (CanteraError) { - handleError(); - } - } - - //-------------- thermodynamic properties ---------------------- - - /// Temperature (K) - doublereal temperature_() - { - return _gas->temperature(); - } - - /// Pressure (Pa) - doublereal pressure_() - { - return _gas->pressure(); - } - - /// Density (kg/m^3) - doublereal density_() - { - return _gas->density(); - } - - /// Mean molar mass (kg/kmol). - doublereal meanmolarmass_() - { - return _gas->meanMolecularWeight(); - } - - /// Molar enthalpy (J/kmol) - doublereal enthalpy_mole_() - { - return _gas->enthalpy_mole(); - } - - /// Molar internal energy (J/kmol) - doublereal intenergy_mole_() - { - return _gas->intEnergy_mole(); - } - - /// Molar entropy (J/kmol-K) - doublereal entropy_mole_() - { - return _gas->entropy_mole(); - } - - /// Molar heat capacity at constant P (J/kmol-K) - doublereal cp_mole_() - { - return _gas->cp_mole(); - } - - /// Molar Gibbs function (J/kmol) - doublereal gibbs_mole_() - { - return _gas->gibbs_mole(); - } - - doublereal enthalpy_mass_() - { - return _gas->enthalpy_mass(); - } - - doublereal intenergy_mass_() - { - return _gas->intEnergy_mass(); - } - - doublereal entropy_mass_() - { - return _gas->entropy_mass(); - } - - doublereal cp_mass_() - { - return _gas->cp_mass(); - } - - doublereal cv_mass_() - { - return _gas->cv_mass(); - } - - doublereal gibbs_mass_() - { - return _gas->gibbs_mass(); - } - - void gotmolefractions_(doublereal* x) - { - _gas->getMoleFractions(x); - } - - void gotmassfractions_(doublereal* y) - { - _gas->getMassFractions(y); - } - -#ifdef WITH_EQUIL - void equilibrate_(char* opt, ftnlen lenopt) - { - try { - if (lenopt != 2) { - throw CanteraError("equilibrate", - "two-character string required."); - } - string optstr = string(opt, 2); - equilibrate(*_gas, optstr.c_str()); - } catch (CanteraError) { - handleError(); - } - } -#endif - - //---------------- kinetics ------------------------- - - void getreactioneqn_(integer* i, char* eqn, ftnlen n) - { - int irxn = *i - 1; - fill(eqn, eqn + n, ' '); - string e = _gas->reactionString(irxn); - int ns = e.size(); - unsigned int nmx = (ns > n ? n : ns); - copy(e.begin(), e.begin()+nmx, eqn); - } - - void getnetproductionrates_(doublereal* wdot) - { - _gas->getNetProductionRates(wdot); - } - - void getcreationrates_(doublereal* cdot) - { - _gas->getCreationRates(cdot); - } - - void getdestructionrates_(doublereal* ddot) - { - _gas->getDestructionRates(ddot); - } - - void getnetratesofprogress_(doublereal* q) - { - _gas->getNetRatesOfProgress(q); - } - - void getfwdratesofprogress_(doublereal* q) - { - _gas->getFwdRatesOfProgress(q); - } - - void getrevratesofprogress_(doublereal* q) - { - _gas->getRevRatesOfProgress(q); - } - - //-------------------- transport properties -------------------- - -#ifdef WITH_TRANSPORT - double viscosity_() - { - try { - return _trans->viscosity(); - } catch (CanteraError) { - handleError(); - return 0.0; - } - } - - double thermalconductivity_() - { - try { - return _trans->thermalConductivity(); - } catch (CanteraError) { - handleError(); - return 0.0; - } - } - - void getmixdiffcoeffs_(double* diff) - { - try { - _trans->getMixDiffCoeffs(diff); - } catch (CanteraError) { - handleError(); - } - } - - void getthermaldiffcoeffs_(double* dt) - { - try { - _trans->getThermalDiffCoeffs(dt); - } catch (CanteraError) { - handleError(); - } - } -#endif - -} - -/* - * HKM 7/22/09: - * I'm skeptical that you need this for any system. - * Definately creates an error (dupl main()) for the solaris - * system - */ -#ifdef NEED_ALT_MAIN -/** - * This C++ main program simply calls the Fortran main program. - */ -int main() -{ - try { - return MAIN__(); - } catch (CanteraError) { - showErrors(cerr); - exit(-1); - } catch (...) { - cout << "An exception was trapped. Program terminating." << endl; - exit(-1); - } -} -#endif