diff --git a/Cantera/matlab/cantera/mexopts.sh b/Cantera/matlab/cantera/mexopts.sh
deleted file mode 100644
index 095b9e0ec..000000000
--- a/Cantera/matlab/cantera/mexopts.sh
+++ /dev/null
@@ -1,375 +0,0 @@
-#
-# mexopts.sh	Shell script for configuring MEX-file creation script,
-#               mex.  These options were tested with the specified compiler.
-#
-# usage:        Do not call this file directly; it is sourced by the
-#               mex shell script.  Modify only if you don't like the
-#               defaults after running mex.  No spaces are allowed
-#               around the '=' in the variable assignment.
-#
-# SELECTION_TAGs occur in template option files and are used by MATLAB
-# tools, such as mex and mbuild, to determine the purpose of the contents
-# of an option file. These tags are only interpreted when preceded by '#'
-# and followed by ':'.
-#
-#SELECTION_TAG_MEX_OPT: Template Options file for building MEX-files via the system ANSI compiler
-#
-# Copyright 1984-2000 The MathWorks, Inc.
-# $Revision$  $Date$
-#----------------------------------------------------------------------------
-#
-    TMW_ROOT="$MATLAB"
-    MFLAGS=''
-    if [ "$ENTRYPOINT" = "mexLibrary" ]; then
-        MLIBS="-L$TMW_ROOT/bin/$Arch -lmx -lmex -lmatlb -lmat -lmwservices -lut -lm"
-    else  
-        MLIBS="-L$TMW_ROOT/bin/$Arch -lmx -lmex -lmat -lm"
-    fi
-    case "$Arch" in
-        Undetermined)
-#----------------------------------------------------------------------------
-# Change this line if you need to specify the location of the MATLAB
-# root directory.  The script needs to know where to find utility
-# routines so that it can determine the architecture; therefore, this
-# assignment needs to be done while the architecture is still
-# undetermined.
-#----------------------------------------------------------------------------
-            MATLAB="$MATLAB"
-            ;;
-        alpha)
-#----------------------------------------------------------------------------
-#           cc -V | grep UNIX
-#           DEC C V5.9-008 on Digital UNIX V4.0 (Rev. 1229)
-#           Digital UNIX Compiler Driver 3.11
-            CC='cc'
-            CFLAGS='-shared -ieee -pthread -std1'
-            CLIBS="$MLIBS -lm"
-            COPTIMFLAGS='-O -DNDEBUG'
-            CDEBUGFLAGS='-g'
-#
-#           cxx -V
-#           Compaq C++ V6.2-024 for Digital UNIX V4.0F  (Rev. 1229)
-            CXX='cxx'
-            CXXFLAGS='-shared -ieee -pthread'
-            CXXLIBS="$MLIBS -lm"
-            CXXOPTIMFLAGS='-O -DNDEBUG'
-            CXXDEBUGFLAGS='-g'
-#
-#           f77 -what
-#           Compaq Fortran 77 Driver V5.3-11
-#           Compaq Fortran 77 V5.3-189-449BB
-            FC='f77'
-            FFLAGS='-shared -fpe3 -pthread'
-            FLIBS="$MLIBS -lm"
-            FOPTIMFLAGS='-O'
-            FDEBUGFLAGS='-g'
-#
-            LD="$COMPILER"
-            LDFLAGS="-pthread -shared -Wl,-expect_unresolved,'*',-hidden,-exported_symbol,$ENTRYPOINT,-exported_symbol,mexVersion,-exported_symbol,'__*'"
-            LDOPTIMFLAGS='-O'
-            LDDEBUGFLAGS='-g'
-#
-            POSTLINK_CMDS=':'
-#----------------------------------------------------------------------------
-            ;;
-        hpux)
-#----------------------------------------------------------------------------
-#           what `which cc`
-#           HP92453-01 B.11.11.02 HP C Compiler
-#            $   Sep  8 2000 23:13:51 $
-            CC='cc'
-            CFLAGS='+Z +DA2.0 -D_POSIX_C_SOURCE=199506L -Wp,-H65535 -Ae'
-            CLIBS="$MLIBS -lm -lc"
-            COPTIMFLAGS='-O -DNDEBUG'
-            CDEBUGFLAGS='-g'
-#
-#           what `which aCC`
-#           HP aC++ B3910B A.03.30
-#           HP aC++ B3910B X.03.27 Language Support Library
-            CXX='aCC'
-            CXXFLAGS='-AA +Z +DA2.0 -D_POSIX_C_SOURCE=199506L -D_HPUX_SOURCE'
-            CXXLIBS="$MLIBS -lm -lstd_v2 -lCsup_v2"
-            CXXOPTIMFLAGS='-O -DNDEBUG +Oconservative'
-            CXXDEBUGFLAGS='-g'
-#
-#           what `which f90`
-#          HP-UX f90 20001114 (140952)  B3907DB/B3909DB B.11.01.27
-#           HP F90 v2.4.10
-#            $ PATCH/11.00:PHCO_95167  Oct  1 1998 13:46:32 $
-            F90LIBDIR='/opt/fortran90/lib/pa2.0'
-            FC='f90'
-            FFLAGS='+Z +DA2.0'
-            FLIBS="$MLIBS -lm -L$F90LIBDIR -lF90 -lcl -lc -lisamstub"
-            FOPTIMFLAGS='-O +Oconservative'
-            FDEBUGFLAGS='-g'
-#
-            LDCXX="$COMPILER"
-            LDCXXFLAGS="-b -Wl,+e,$ENTRYPOINT,+e,mexVersion,+e,_shlInit"
-            LDCXXOPTIMFLAGS='-O'
-            LDCXXDEBUGFLAGS='-g'
-#
-            LD='ld'
-            LDFLAGS="-b +e $ENTRYPOINT +e mexVersion"
-            LDOPTIMFLAGS=''
-            LDDEBUGFLAGS=''
-#
-            POSTLINK_CMDS=':'
-#----------------------------------------------------------------------------
-            ;;
-        hp700)
-#----------------------------------------------------------------------------
-#           what `which cc`
-#           HP92453-01 A.10.32.30 HP C Compiler
-            CC='cc'
-#           Remove +DAportable from CFLAGS if you wish to optimize
-#           for target machine
-            CFLAGS='+Z -Ae +DAportable -Wp,-H65535'
-            CLIBS="$MLIBS -lc"
-            COPTIMFLAGS='-O -DNDEBUG'
-            CDEBUGFLAGS='-g'
-#
-#           what `which aCC`
-#           HP aC++ B3910B A.01.27
-#           HP aC++ B3910B A.01.19.02 Language Support Library
-            CXX='aCC'
-#           Remove +DAportable from CXXFLAGS if you wish to optimize
-#           for target machine
-            CXXFLAGS='-AA +Z -D_HPUX_SOURCE +DAportable'
-            CXXLIBS="$MLIBS -lstd_v2 -lCsup_v2"
-            CXXOPTIMFLAGS='-O -DNDEBUG'
-            CXXDEBUGFLAGS='-g'
-#
-#           what `which f90`
-#            HP-UX f90 20010618 (003353)  B3907DB/B3909DB PHSS_23952 also  B.10.20.40
-#            HP F90 v2.5.1
-            F90LIBDIR='/opt/fortran90/lib'
-            FC='f90'
-            FFLAGS='+Z +DAportable'
-            FLIBS="$MLIBS -L$F90LIBDIR -lF90 -lcl -lc -lisamstub"
-            FOPTIMFLAGS='-O'
-            FDEBUGFLAGS='-g'
-#
-            LDCXX="$COMPILER"
-            LDCXXFLAGS="-b -Wl,+e,$ENTRYPOINT,+e,mexVersion,+e,_shlInit,+e,errno"
-            LDCXXOPTIMFLAGS='-O'
-            LDCXXDEBUGFLAGS='-g'
-#
-            LD='ld'
-            LDFLAGS="-b +e $ENTRYPOINT +e mexVersion +e errno"
-            LDOPTIMFLAGS=''
-            LDDEBUGFLAGS=''
-#
-            POSTLINK_CMDS=':'
-#----------------------------------------------------------------------------
-            ;;
-        ibm_rs)
-#----------------------------------------------------------------------------
-#           lslpp -l | vacpp.cmp.core
-#           5.0.0.0  COMMITTED  IBM C and C++ Compilers
-            CC='cc'
-            CFLAGS='-D_THREAD_SAFE -D_ALL_SOURCE -qchars=signed -qlanglvl=ansi'
-            CLIBS="$MLIBS -lm "
-            COPTIMFLAGS='-O -DNDEBUG'
-            CDEBUGFLAGS='-g'
-#           lslpp -l vacpp.cmp.core
-#           5.0.0.0  COMMITTED  IBM C and C++ Compilers
-            CXX='/usr/vacpp/bin/xlC'
-            CXXFLAGS='-D_THREAD_SAFE -D_ALL_SOURCE -qrtti=all'
-            CXXLIBS="$MLIBS -lm"
-            CXXOPTIMFLAGS='-O -DNDEBUG'
-            CXXDEBUGFLAGS='-g'
-#
-#           lslpp -l xlfcmp
-#           7.1.0.0  COMMITTED  I XL Fortran Compiler
-            FC='f77'
-            FFLAGS=''
-            FLIBS="$MLIBS -lmat -lm"
-            FOPTIMFLAGS='-O'
-            FDEBUGFLAGS='-g'
-#
-            LDCXX='/usr/vacpp/bin/makeC++SharedLib'
-            LDCXXFLAGS='-p 0'
-            LDCXXOPTIMFLAGS=''
-            LDCXXDEBUGFLAGS=''
-#
-            LD="$COMPILER"
-            LDFLAGS="-bE:$TMW_ROOT/extern/lib/$Arch/$MAPFILE -bM:SRE -bnoentry"
-            LDOPTIMFLAGS='-O -Wl,-s'
-            LDDEBUGFLAGS='-g'
-#
-            POSTLINK_CMDS=':'
-#----------------------------------------------------------------------------
-            ;;
-        glnx86)
-#----------------------------------------------------------------------------
-            RPATH="-Wl,--rpath-link,$TMW_ROOT/extern/lib/$Arch,--rpath-link,$TMW_ROOT/bin/$Arch"
-#           gcc -v
-#           gcc version 2.95.2 19991024 (release)
-            CC='gcc'
-            CFLAGS='-fPIC -ansi -D_GNU_SOURCE -pthread'
-            CLIBS="$RPATH $MLIBS -lm"
-            COPTIMFLAGS='-O -DNDEBUG'
-            CDEBUGFLAGS='-g'
-#           
-#           g++ -v
-#           gcc version 2.95.2 19991024 (release)
-            CXX='g++'
-#           Add -fhandle-exceptions to CXXFLAGS to support exception handling
-            CXXFLAGS='-fPIC -ansi -D_GNU_SOURCE -pthread'
-            CXXLIBS="$RPATH $MLIBS -lm"
-            CXXOPTIMFLAGS='-O -DNDEBUG'
-            CXXDEBUGFLAGS='-g'
-#
-#           g77 -v -xf77-version 
-#           g77 version 2.95.2 19991024 (release) 
-#           (from FSF-g77 version 0.5.25 19991024 (release))
-#           NOTE: g77 is not thread safe
-            FC='g77'
-            FFLAGS='-fPIC'
-            FLIBS="$RPATH $MLIBS -lm"
-            FOPTIMFLAGS='-O'
-            FDEBUGFLAGS='-g'
-#
-            LD="$COMPILER"
-            LDFLAGS="-pthread -shared -Wl,--version-script,$TMW_ROOT/extern/lib/$Arch/$MAPFILE"
-            LDOPTIMFLAGS='-O'
-            LDDEBUGFLAGS='-g'
-#
-            POSTLINK_CMDS=':'
-#----------------------------------------------------------------------------
-            ;;
-        sgi)
-#----------------------------------------------------------------------------
-#           cc -version
-#           MIPSpro Compilers: Version 7.3.1.2m
-            CC='cc'
-            CFLAGS='-n32 -signed -OPT:IEEE_NaN_inf=ON -D_POSIX_C_SOURCE=199506L -D__EXTENSIONS__ -D_XOPEN_SOURCE -D_XOPEN_SOURCE_EXTENDED'
-            CLIBS="-dont_warn_unused $MLIBS -lm -lc"
-            COPTIMFLAGS='-O -DNDEBUG'
-            CDEBUGFLAGS='-g'
-#           
-#           CC -version
-#           MIPSpro Compilers: Version 7.3.1.2m
-            CXX='CC'
-#           Add -exceptions to CXXFLAGS to support exception handling
-            CXXFLAGS='-n32 -OPT:IEEE_NaN_inf=ON -D_POSIX_C_SOURCE=199506L -D__EXTENSIONS__ -D_XOPEN_SOURCE -D_XOPEN_SOURCE_EXTENDED  -LANG:STD -ptused'
-            CXXLIBS="-dont_warn_unused $MLIBS -lm -lC -lCio"
-            CXXOPTIMFLAGS='-O -DNDEBUG'
-            CXXDEBUGFLAGS='-g'
-#
-#           f77 -version
-#           MIPSpro Compilers: Version 7.3.1.2m
-            FC='f77'
-            FFLAGS='-n32 -OPT:IEEE_NaN_inf=ON'
-            FLIBS="-dont_warn_unused $MLIBS -lm"
-            FOPTIMFLAGS='-O'
-            FDEBUGFLAGS='-g'
-#
-            LD="$COMPILER"
-            LDFLAGS="-n32 -shared -exported_symbol $ENTRYPOINT -exported_symbol mexVersion"
-            LDOPTIMFLAGS='-O'
-            LDDEBUGFLAGS='-g'
-#
-            POSTLINK_CMDS=':'
-#----------------------------------------------------------------------------
-            ;;
-        sol2)
-#----------------------------------------------------------------------------
-#           cc -V
-#           WorkShop Compilers 5.0 98/12/15 C 5.0
-            CC='cc'
-            CFLAGS='-KPIC -dalign -xlibmieee -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -mt'
-            CLIBS="$MLIBS -lm -lc"
-            COPTIMFLAGS='-xO3 -xlibmil -DNDEBUG'
-            CDEBUGFLAGS='-g'
-#           
-#           CC -V
-#           WorkShop Compilers 5.0 98/12/15 C++ 5.0
-            CXX='CC -compat=5'
-            CCV=`CC -V 2>&1`
-            version=`expr "$CCV" : '.*\([0-9][0-9]*\)\.'`
-            if [ "$version" = "4" ]; then
-                    echo "SC5.0 or later C++ compiler is required"
-            fi
-            CXXFLAGS='-KPIC -dalign -xlibmieee -D__EXTENSIONS__ -D_POSIX_C_SOURCE=199506L -mt'
-            CXXLIBS="$MLIBS -lm -lCstd -lCrun"
-            CXXOPTIMFLAGS='-xO3 -xlibmil -DNDEBUG'
-            CXXDEBUGFLAGS='-g'
-#
-#           f77 -V
-#           WorkShop Compilers 5.0 99/09/16 FORTRAN 77 5.0 patch 107596-03
-            FC='f77'
-            FFLAGS='-KPIC -dalign -mt'
-            FLIBS="$MLIBS -lF77 -lM77 -lsunmath -lm -lcx -lc"
-            FOPTIMFLAGS='-O'
-            FDEBUGFLAGS='-g'
-#
-            LD="$COMPILER"
-            LDFLAGS="-G -mt -M$TMW_ROOT/extern/lib/$Arch/$MAPFILE"
-            LDOPTIMFLAGS='-O'
-            LDDEBUGFLAGS='-g'
-#
-            POSTLINK_CMDS=':'
-#----------------------------------------------------------------------------
-            ;;
-        mac)
-#----------------------------------------------------------------------------
-            CC='g++2'
-            CFLAGS='-fno-common -traditional-cpp'
-
-            CLIBS="$MLIBS"
-
-            COPTIMFLAGS='-O3 -DNDEBUG'
-            CDEBUGFLAGS='-g'
-
-            if [ -f /usr/bin/g++2 ]; then 
-                CXX=g++2
-            else
-                CXX=c++
-            fi
-            CXXFLAGS='-fno-common -traditional-cpp'
-            CXXLIBS="$MLIBS -lstdc++"
-            CXXOPTIMFLAGS='-O3 -DNDEBUG'
-            CXXDEBUGFLAGS='-g'
-#
-            FC='f77'
-            FFLAGS='-f -N15 -N11 -s -Q51 -W'
-            ABSOFTLIBDIR=`which $FC | sed -n -e '1s|bin/'$FC'|lib|p'`
-            FLIBS="-L$ABSOFTLIBDIR -lfio -lf77math"
-            FOPTIMFLAGS='-O'
-            FDEBUGFLAGS='-g'
-#
-            LD="$CC"
-            LDFLAGS="-bundle -Wl,-flat_namespace -undefined suppress -yui"
-            LDOPTIMFLAGS='-O'
-            LDDEBUGFLAGS='-g'
-#
-            POSTLINK_CMDS='nmedit -s $TMW_ROOT/extern/lib/$Arch/$MAPFILE $mex_file'
-#----------------------------------------------------------------------------
-            ;;
-    esac
-#############################################################################
-#
-# Architecture independent lines:
-#
-#     Set and uncomment any lines which will apply to all architectures.
-#
-#----------------------------------------------------------------------------
-#           CC="$CC"
-#           CFLAGS="$CFLAGS"
-#           COPTIMFLAGS="$COPTIMFLAGS"
-#           CDEBUGFLAGS="$CDEBUGFLAGS"
-#           CLIBS="$CLIBS"
-#
-#           FC="$FC"
-#           FFLAGS="$FFLAGS"
-#           FOPTIMFLAGS="$FOPTIMFLAGS"
-#           FDEBUGFLAGS="$FDEBUGFLAGS"
-#           FLIBS="$FLIBS"
-#
-#           LD="$LD"
-#           LDFLAGS="$LDFLAGS"
-#           LDOPTIMFLAGS="$LDOPTIMFLAGS"
-#           LDDEBUGFLAGS="$LDDEBUGFLAGS"
-#----------------------------------------------------------------------------
-#############################################################################