[Matlab] Switch to explicit class specific hndl functions. Deprecate generic hndl functions

interfaces/matlab/toolbox/@FlowDevice/install.m

@@ -5,8 +5,8 @@ if nargin == 3
         error(['Flow devices can only be installed between reactors or' ...
             ' reservoirs'])
     end
-    i = hndl(upstream);
-    j = hndl(downstream);
+    i = reactor_hndl(upstream);
+    j = reactor_hndl(downstream);
     ok = flowdevicemethods(2, f.index, i, j);
     if ok < 0
         error(geterr)

interfaces/matlab/toolbox/@Kinetics/Kinetics.m

@@ -32,7 +32,7 @@ if ~isa(r, 'XML_Node')
 end
 
 k.owner = 1;
-ixml = hndl(r);
+ixml = xml_hndl(r);
 
 % get the integer indices used to find the stored objects
 % representing the phases participating in the mechanism.

interfaces/matlab/toolbox/@Kinetics/hndl.m

@@ -1,2 +1,4 @@
 function i = hndl(k)
+
+warning('This function is deprecated in favor of kinetics_hndl.m')
 i = k.id;

interfaces/matlab/toolbox/@Reactor/hndl.m

@@ -1,2 +1,4 @@
 function i = hndl(r)
+
+warning('This function is deprecated in favor of reactor_hndl.m')
 i = r.index;

interfaces/matlab/toolbox/@ThermoPhase/ThermoPhase.m

@@ -8,7 +8,7 @@ if nargin == 1
         return
     elseif isa(r, 'XML_Node')
         t.owner = 1;
-        hr = hndl(r);
+        hr = xml_hndl(r);
         t.tp_id = thermo_get(hr, 0);
         if t.tp_id < 0
             error(geterr);

interfaces/matlab/toolbox/@ThermoPhase/hndl.m

@@ -1,2 +1,4 @@
 function i = hndl(p)
+
+warning('This function is deprecated in favor of thermo_hndl.m')
 i = p.tp_id;

interfaces/matlab/toolbox/@Transport/hndl.m

@@ -1,2 +1,4 @@
 function n = hndl(a)
+
+warning('This function is deprecated in favor of trans_hndl')
 n = a.id;

interfaces/matlab/toolbox/@XML_Node/hndl.m

@@ -1,2 +1,4 @@
 function i = hndl(x)
+
+warning('This function is deprecated in favor of xml_hndl.m')
 i = x.id;

interfaces/matlab/toolbox/@XML_Node/xml_hndl.m

@@ -0,0 +1,3 @@
+function i = xml_hndl(x)
+
+i = x.id;