2008-01-07 15:02  hkmoffa

	* test_problems/Makefile.in: Added a missing test

2008-01-07 15:00  hkmoffa

	* Cantera/src/transport/TransportFactory.cpp: Eliminated a solaris
	  warning

2008-01-07 14:09  hkmoffa

	* test_problems/VCSnonideal/NaCl_equil/Makefile.in: Fixed an error
	  in the Makefile.in

2008-01-07 14:05  hkmoffa

	* Cantera/cxx/src/Makefile.in: Fixed an error in the Makefile.in

2008-01-07 13:53  hkmoffa

	* Cantera/src/equil/: ChemEquil.cpp, Makefile.in, equilibrate.cpp,
	  vcs_MultiPhaseEquil.cpp, vcs_TV.cpp, vcs_VolPhase.cpp,
	  vcs_nasa_poly.h, vcs_prob.cpp, vcs_report.cpp,
	  vcs_setMolesLinProg.cpp, vcs_solve.cpp, vcs_solve_TP.cpp,
	  vcs_species_thermo.cpp: Solaris 64 bit port modifications

2008-01-07 13:17  hkmoffa

	* test_problems/Makefile.in: Fixed a spelling error

2008-01-07 13:07  hkmoffa

	* tools/doc/doxyinput/: buildcygwin.txt, configuring.txt: Doxygen
	  update -> adding more related pages from the Cantera site

2008-01-07 08:17  hkmoffa

	* test_problems/ChemEquil_gri_matrix/Makefile.in: Updated Makefile
	  to new methodology

2008-01-07 08:10  hkmoffa

	* tools/doc/doxyinput/bindings.txt: Added bindings

2008-01-07 08:07  hkmoffa

	* test_problems/Makefile.in: Deleted a directory that hasn't been
	  checked in yet

2008-01-06 15:28  hkmoffa

	* tools/doc/doxyinput/: build.txt, numarray.txt: Added more
	  documentation from the Cantera site into the cvs dox version

2008-01-06 14:38  hkmoffa

	* Cantera/src/thermo/: HMWSoln.h, WaterProps.cpp, WaterProps.h:
	  Doxygen update to WaterProps

2008-01-06 12:15  hkmoffa

	* test_problems/python/README: updated the readme

2008-01-06 11:49  hkmoffa

	* configure, configure.in: Added a test dir

2008-01-06 11:48  hkmoffa

	* test_problems/Makefile.in: Added a test

2008-01-06 11:30  hkmoffa

	* test_problems/ChemEquil_red1/: Makefile.in, basopt_red1.cpp: Made
	  the makefile.in usable from both the build and the install
	  directory trees.

2008-01-06 11:29  hkmoffa

	* configure, configure.in: Added calculation of two new variables
	  INSTALL_LIBS_DEP and RAW_LIBS_DEP These are lists of
	  dependencies. The INSTALL_LIBS_DEP contains the dependency list
	  for LOCAL_LIBS based on the installation directory.  The
	  RAW_LIBS_DEP contains a list of libraries without the any
	  absolute path name. See the Chemequil_red1 Makefile.in for an
	  example of their usage

2008-01-05 06:36  dggoodwin

	* CVSROOT/avail: added Graham Goldin to avail

2008-01-04 16:50  hkmoffa

	* Cantera/src/base/stringUtils.cpp: Added an id block

2008-01-04 16:49  hkmoffa

	* Cantera/src/base/ctml.h: Doxygen update

2008-01-04 16:48  hkmoffa

	* tools/doc/Cantera.cfg.in: Added a file

2008-01-04 16:47  hkmoffa

	* Cantera/src/thermo/WaterProps.h: Doxygen update -> still working
	  on it

2008-01-04 16:36  hkmoffa

	* tools/doc/Cantera.cfg.in: Added a file

2008-01-04 16:36  hkmoffa

	* Cantera/src/thermo/phasereport.cpp: Doxygen update: commented
	  routines

2008-01-04 16:22  hkmoffa

	* Cantera/src/base/utilities.h: Doxygen update. Eliminated some
	  warnings

2008-01-04 15:07  hkmoffa

	* Cantera/src/equil/: vcs_MultiPhaseEquil.cpp,
	  vcs_MultiPhaseEquil.h, vcs_VolPhase.cpp, vcs_internal.h,
	  vcs_prob.cpp: took out all references to cantera/kernel and
	  kernel in include paths.  It was getting too confusing and
	  counterproductive

2008-01-04 14:16  hkmoffa

	* Makefile.in: Added - in front of some remove and clean commands.
	  this causes the script not to fail if there is an error executing
	  those commands.

2008-01-04 13:58  hkmoffa

	* test_problems/python/Makefile.in: Added the tut4 test problem.

2008-01-04 13:44  hkmoffa

	* test_problems/python/: Makefile.in, flame1_blessed.csv,
	  flame1_blessed_linux.csv, runtest: Added flame1 test in its own
	  directory

2008-01-04 13:16  hkmoffa

	* test_problems/python/Makefile.in: Adding in another test problem

2008-01-03 17:12  hkmoffa

	* test_problems/python/Makefile.in: Added tut1 python tutorial to
	  test suite

2008-01-03 16:21  hkmoffa

	* Cantera/cxx/include/Cantera.h: Guarded against CANTERA_APP being
	  defined previously

2008-01-03 16:19  hkmoffa

	* Cantera/src/equil/vcs_internal.h: Added support for use as an
	  CANTERA_APP

2008-01-03 15:52  hkmoffa

	* win32/vc8/: cantera.sln, SetupCantera/SetupCantera.vdproj,
	  cti2ctml/.cvsignore, cti2ctml/cti2ctml.vcproj: ct8 update. It's
	  basically working now.

2008-01-03 15:32  hkmoffa

	* win32/vc8/: cantera.sln, SetupCantera/SetupCantera.vdproj,
	  base_h/.cvsignore, base_h/base_h.vcproj, base_h/docopy.cmd: Copy
	  .h files project -> may be temporary

2008-01-03 14:29  hkmoffa

	* Cantera/matlab/cantera/.cvsignore: Added files

2008-01-03 13:38  hkmoffa

	* Cantera/src/equil/: Makefile.in, vcs_MultiPhaseEquil.h,
	  vcs_dbocls.c, vcs_dbolsm.c, vcs_dmout.c, vcs_inest.cpp,
	  vcs_ivout.c, vcs_linmaxc.cpp, vcs_solve.h, vcs_xerror.c: got the
	  Linear programming routines to work within the Cantera directory.
	  I had forgot to include several files. You can now turn these on
	  via a Makefile flag

2008-01-03 10:54  hkmoffa

	* tools/testtools/csvdiff.cpp: Changes due to warnings from msft
	  vc8

2008-01-03 10:53  hkmoffa

	* tools/src/ck2cti.cpp: Added std:: modifier

2008-01-03 10:52  hkmoffa

	* Cantera/clib/src/ctbdry.cpp: Changed include directory path
	  format to new format

2008-01-03 10:49  hkmoffa

	* Cantera/src/numerics/IDA_Solver.h: fixed mismatch between
	  declaration and definition added std:: statements.

2008-01-03 10:49  hkmoffa

	* Cantera/src/numerics/DASPK.h: Addes std:: modifiers

2008-01-03 10:48  hkmoffa

	* Cantera/src/numerics/DAE_Solver.h: Fixed mismatch between
	  declaration and definition

2008-01-03 10:47  hkmoffa

	* Cantera/src/base/utilities.h: Added pragmas

2008-01-03 10:46  hkmoffa

	* Cantera/src/kinetics/GasKineticsWriter.h: Added some std::
	  modifiers

2008-01-03 10:45  hkmoffa

	* Cantera/src/converters/: ck2ctml.cpp, ck2ctml.h: changed include
	  directory path statements.

2008-01-03 10:44  hkmoffa

	* Cantera/src/equil/vcs_linmaxc.cpp: Added a missing namespace
	  statement

2008-01-03 10:44  hkmoffa

	* Cantera/src/equil/vcs_nasa_poly.cpp: added pragmas to get rid of
	  warnings.

2008-01-03 10:43  hkmoffa

	* Cantera/src/equil/vcs_prob.cpp: Got rid of strcasecmp added
	  pragmas changed ifdefs around

2008-01-03 10:42  hkmoffa

	* Cantera/src/equil/vcs_solve_TP.cpp: Added pragrams to get rid of
	  msft vc warnings.

2008-01-03 10:41  hkmoffa

	* Cantera/src/equil/: vcs_VolPhase.cpp, vcs_MultiPhaseEquil.cpp:
	  Changed the ifdef blocks around

2008-01-03 10:40  hkmoffa

	* Cantera/src/equil/vcs_species_thermo.cpp: updates due to msft vc8
	  port

2008-01-03 10:39  hkmoffa

	* win32/: README, vc7/cantera.sln, vc7/configure.vc++,
	  vc8/cantera.sln, vc8/cantera_no_sundials.sln,
	  vc8/csvdiff/.cvsignore, vc8/csvdiff/csvdiff.vcproj,
	  vc8/ctmatlab/.cvsignore, vc8/ctmatlab/ctmatlab.vcproj,
	  vc8/ctmatlab/runmlab.cmd: Incremental update to vc8

2008-01-03 10:36  hkmoffa

	* tools/testtools/csvdiff.cpp: Untested mods for windows

2008-01-03 10:03  hkmoffa

	* win32/vc8/: .cvsignore, ck2cti/.cvsignore, ck2cti/ck2cti.vcproj,
	  clib/.cvsignore, clib/clib.vcproj, config_h/.cvsignore,
	  config_h/config_h.vcproj, config_h/docopy.cmd,
	  f2c_math/.cvsignore, f2c_math/f2c_math.vcproj,
	  transport/.cvsignore, transport/transport.vcproj: Incremental
	  commit of vc8

2008-01-03 09:57  hkmoffa

	* win32/vc8/: Sundials/CVODES/.cvsignore,
	  Sundials/CVODES/CVODES.vcproj, Sundials/NVEC_SER/.cvsignore,
	  Sundials/NVEC_SER/NVEC_SER.vcproj,
	  Sundials/SUNDIALS_SHARED/.cvsignore,
	  Sundials/SUNDIALS_SHARED/SUNDIALS_SHARED.vcproj,
	  f2c_blas/.cvsignore, f2c_blas/f2c_blas.vcproj,
	  numerics/.cvsignore, numerics/numerics.vcproj, tpx/.cvsignore,
	  tpx/tpx.vcproj, zeroD/.cvsignore, zeroD/zeroD.vcproj: Incremental
	  update of vc8 directory

2008-01-03 09:40  hkmoffa

	* win32/vc8/: ctpython/.cvsignore, ctpython/ctpython.vcproj,
	  ctpython/runpython.cmd, equil/.cvsignore, equil/equil.vcproj,
	  f2c_libs/.cvsignore, f2c_libs/f2c_libs.vcproj,
	  kinetics/.cvsignore, kinetics/kinetics.vcproj, oneD/.cvsignore,
	  oneD/oneD.vcproj, spectra/.cvsignore, spectra/spectra.vcproj:
	  Incremental update of vc8 directory

2008-01-03 09:30  hkmoffa

	* win32/vc8/: SetupCantera/.cvsignore,
	  SetupCantera/SetupCantera.vdproj,
	  SetupCantera/SetupCanteraLite.vdproj, converters/.cvsignore,
	  converters/converters.vcproj, f2c_lapack/.cvsignore,
	  f2c_lapack/f2c_lapack.vcproj, thermo/.cvsignore,
	  thermo/thermo.vcproj: Incrementally putting vc8 in

2008-01-03 09:17  hkmoffa

	* win32/vc8/: cantera.sln, prepreconfig.vc++, base/.cvsignore,
	  base/base.vcproj: Starting to check in vc8 directory for vc++
	  2005 compiler

2008-01-02 15:35  hkmoffa

	* Cantera/src/equil/: vcs_inest.cpp, vcs_setMolesLinProg.cpp:
	  compiler errors in an alternate ifdef block.

2008-01-02 14:41  hkmoffa

	* Cantera/src/thermo/State.h: Added pragmas to reduce warnings.

2008-01-02 14:39  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.cpp, HMWSoln_input.cpp: Took
	  strcasecmp out of code, since it's not in VC++

2008-01-02 10:22  hkmoffa

	* Cantera/src/base/: ct2ctml.cpp, misc.cpp, stringUtils.cpp,
	  xml.cpp: Added more pragma disables for removing VC++ compiler
	  warnings.

2008-01-02 09:01  hkmoffa

	* Cantera/src/equil/: MultiPhaseEquil.cpp, vcs_MultiPhaseEquil.cpp:
	  Added WITH_ELECTROLYTES in several places. Haven't checked to see
	  whether the code compiles with Electrolytes off yet, however.

2008-01-01 17:08  hkmoffa

	* win32/vc7/prepreconfig.vc++: Added a new version of this file.

2008-01-01 17:07  hkmoffa

	* .cvsignore: Added more files.

2008-01-01 15:57  hkmoffa

	* win32/vc7/base/: .cvsignore, base.vcproj: Starting the laborious
	  process of getting the ms vc .NET compile up to date

2008-01-01 15:52  hkmoffa

	* tools/doc/doxyinput/: initthermo.txt, winbuild.txt: Added a
	  reference to the sourceforge windows build procedure doc.

2008-01-01 14:48  hkmoffa

	* test_problems/: ChemEquil_ionizedGas/Makefile.in,
	  VCSnonideal/NaCl_equil/runtest, VCSnonideal/NaCl_equil/runtestd,
	  cathermo/DH_graph_1/runtest, cathermo/DH_graph_NM/runtest,
	  cathermo/DH_graph_Pitzer/runtest,
	  cathermo/DH_graph_acommon/runtest,
	  cathermo/DH_graph_bdotak/runtest, cathermo/HMW_dupl_test/runtest,
	  cathermo/HMW_graph_CpvT/runtest, cathermo/HMW_graph_GvI/runtest,
	  cathermo/HMW_graph_GvT/runtest, cathermo/HMW_graph_VvT/runtest,
	  cathermo/HMW_test_1/runtest, cathermo/HMW_test_3/runtest,
	  cathermo/stoichSubSSTP/runtest: Changes to shell scripts when .
	  isn't in the path

2008-01-01 14:38  hkmoffa

	* test_problems/cathermo/HMW_graph_HvT/runtest: fixed error when .
	  isn't in path

2008-01-01 11:36  hkmoffa

	* configure: Making sure configure is up to date with configure.in
	  changes.

2008-01-01 11:32  hkmoffa

	* Cantera/user/.cvsignore: Added more ignore rules

2008-01-01 11:31  hkmoffa

	* Cantera/cxx/src/Makefile.in: Added Makefile dep on object files.

2008-01-01 11:31  hkmoffa

	* Cantera/clib/src/Makefile.in: Added deps

2008-01-01 11:30  hkmoffa

	* Cantera/python/Makefile.in: Used the LOCAL_LIBS_DEP configure
	  variable.

2008-01-01 11:27  hkmoffa

	* ext/f2c_blas/Makefile.in: Added dependency on makefile

2008-01-01 11:25  hkmoffa

	* ext/: f2c_lapack/Makefile.in, f2c_math/Makefile.in,
	  cvode/Makefile.in, f2c_libs/Makefile.in: Added dependency on
	  Makefile

2008-01-01 11:25  hkmoffa

	* ext/lapack/Makefile.in: Added dependencies on Makefile.

2008-01-01 11:24  hkmoffa

	* ext/tpx/: CarbonDioxide.cpp, Makefile.in, RedlichKwong.cpp,
	  Sub.cpp: Took out unused variables.

2008-01-01 11:21  hkmoffa

	* ext/math/Makefile.in: Added more dependencies.

2008-01-01 11:19  hkmoffa

	* Cantera/user/Makefile.in: Updated the makefile and added
	  dependencies.

2008-01-01 11:18  hkmoffa

	* Cantera/src/zeroD/Makefile.in: Added more dependencies

2008-01-01 11:18  hkmoffa

	* Cantera/src/thermo/Makefile.in: Added more dependencies.

2008-01-01 11:16  hkmoffa

	* Cantera/src/converters/: Makefile.in, newThermoReading.txt: Added
	  new dependencies.

2008-01-01 11:14  hkmoffa

	* Cantera/src/: equil/Makefile.in, oneD/Makefile.in: Added more
	  dependencies.

2008-01-01 11:13  hkmoffa

	* Cantera/src/: kinetics/Makefile.in, numerics/Makefile.in,
	  transport/Makefile.in: Added more dependencies

2008-01-01 11:11  hkmoffa

	* Cantera/src/base/Makefile.in: Added more dependency checking.
	  Object files now depend on Makefile.

2008-01-01 11:09  hkmoffa

	* Cantera/src/base/ct_defs.h: Doxygen addition to elim a doxygen
	  warning.

2008-01-01 11:08  hkmoffa

	* ext/tpx/: .cvsignore, Makefile.in: added more dependency checks

2008-01-01 11:06  hkmoffa

	* configure.in: Added a LOCAL_LIBS_DEP variable, that may be used
	  to establish library dependencies in executables for the
	  LOCAL_LIBS variable.

2008-01-01 11:04  hkmoffa

	* Cantera/cxx/include/: Cantera.h, Interface.h: Fixed some
	  compilation errors that arose from Interface.h, due to namespace
	  changes.

	  Added xml.h to Cantera.h

2008-01-01 11:01  hkmoffa

	* test_problems/surfkin/: Makefile.in, surfdemo.cpp: Added
	  Cantera_CXX namespace

2008-01-01 09:13  hkmoffa

	* Cantera/src/thermo/: .cvsignore, Makefile.in: Addition to the %.d
	  dependencies:    I'm adding Makefile and %.o to the dependency
	  for %.d.  This alleviates somes problems with .o files not being
	  rebuilt when they should have been. Adding in the Makefile means
	  that .d files are remade whenever configure is run. This isn't a
	  total solution for what happens when defines change. However,
	  it's a start. Adding in %.o captures changes in .h files that the
	  .cpp files depends on.

2008-01-01 08:54  hkmoffa

	* data/inputs/.cvsignore: Added an xml file, silane.xml

2008-01-01 08:51  hkmoffa

	* Cantera/src/oneD/Makefile.in: Fixed an error in a depends rule.

2007-12-28 15:29  hkmoffa

	* preconfig: Added comments to the file.

2007-12-28 15:24  hkmoffa

	* Cantera/python/Cantera/constants.py: Added an import math
	  command.

2007-12-28 06:39  dggoodwin

	* Cantera/python/Cantera/: constants.py, schem.py: removed
	  deprecated file

2007-12-27 18:19  hkmoffa

	* configure, configure.in: 2 changes   added libctf2c to the
	  LCXX_END_LIBS variable when it is needed. f2c is more   of a
	  system level variable.    Changed the default PIC setting to
	  empty for cygwin environments.

2007-12-27 18:16  hkmoffa

	* Cantera/src/base/ct2ctml.cpp: Changed the pypath() routine to
	  reflect its own documentation. If it fails to find PYTHON_CMD in
	  the environment, it will now return the string python, and not
	  throw an error. WIth this change PYTHON_CMD doesn't have to be
	  set in the user's environment. Instead Cantera will fall back to
	  using the user's default path to find the executable, python.

2007-12-27 17:53  hkmoffa

	* test_problems/min_python/negATest/Makefile.in: Added .depends to
	  all target

2007-12-27 17:32  hkmoffa

	* test_problems/VCSnonideal/NaCl_equil/: runtest, runtestd: Made
	  the csvdiff commands have a relative path

2007-12-27 17:00  hkmoffa

	* Cantera/src/transport/.cvsignore: Added .d files

2007-12-27 16:58  hkmoffa

	* Cantera/python/src/ctfunc_methods.cpp: Removed unused variables.

2007-12-27 16:51  hkmoffa

	* Cantera/src/converters/.cvsignore: Added .d files

2007-12-27 16:51  hkmoffa

	* Cantera/clib/src/Makefile.in: Made the depends rule like the cxx
	  rule.

2007-12-27 16:43  hkmoffa

	* Cantera/src/numerics/Makefile.in: Made the depends rule like the
	  cxx rule.

2007-12-27 16:38  hkmoffa

	* Cantera/cxx/src/.cvsignore: Added .d files

2007-12-27 16:37  hkmoffa

	* Cantera/cxx/src/Makefile.in: Made depends rule like the cxx rule.

2007-12-27 16:23  hkmoffa

	* Cantera/src/converters/Makefile.in: Made the depends rule like
	  the cxx rule

2007-12-27 16:16  hkmoffa

	* Cantera/src/: numerics/Makefile.in, spectra/Makefile.in: Made the
	  depends rule like the cxx rule.

2007-12-27 16:15  hkmoffa

	* Cantera/src/kinetics/Makefile.in: Made the depends rule the same
	  as the cxx rule.

2007-12-27 16:10  hkmoffa

	* Cantera/src/transport/Makefile.in: Changed the depends rule to be
	  like the cxx rule

2007-12-27 16:06  hkmoffa

	* Cantera/src/thermo/Makefile.in: Made depends rule like the cxx
	  rule.

2007-12-27 15:58  hkmoffa

	* Cantera/src/zeroD/Makefile.in: Made depends rule like the compile
	  rule

2007-12-27 15:50  hkmoffa

	* Cantera/src/oneD/.cvsignore: Added .d files

2007-12-27 15:49  hkmoffa

	* Cantera/src/oneD/Makefile.in: Fixed depends rule to be like the
	  c++ rule.

2007-12-27 15:38  hkmoffa

	* Cantera/src/base/Makefile.in: Made the depends rule take
	  CXX_FLAGS just as the regular compile rule does.

2007-12-27 15:35  hkmoffa

	* ext/f2c_math/Makefile.in: Made CFLAGS take the PIC_FLAG argument,
	  just as CXXFLAGS does.

2007-12-27 11:09  hkmoffa

	* Cantera/src/thermo/: Nasa9Poly1.cpp, Nasa9Poly1.h,
	  Nasa9PolyMultiTempRegion.cpp, Nasa9PolyMultiTempRegion.h,
	  SpeciesThermo.h, ThermoPhase.cpp, speciesThermoTypes.h: doxygen
	  update    added Nasa9 connections and cleaned up warning
	  messages.

2007-12-27 11:08  hkmoffa

	* tools/doc/Cantera.cfg.in: Added doxygen connection for NASA9
	  polynomials

2007-12-20 18:58  hkmoffa

	* Cantera/cxx/include/GRI30.h, Cantera/cxx/include/IdealGasMix.h,
	  Cantera/cxx/include/Metal.h, Cantera/cxx/include/PureFluid.h,
	  Cantera/cxx/include/importPhase.h, Cantera/cxx/src/Makefile.in,
	  Cantera/cxx/src/cxxutils.cpp,
	  Cantera/src/thermo/MolalityVPSSTP.cpp,
	  Cantera/src/thermo/MolalityVPSSTP.h,
	  Cantera/src/thermo/PureFluidPhase.cpp,
	  Cantera/src/thermo/PureFluidPhase.h,
	  Cantera/src/thermo/ThermoPhase.cpp,
	  Cantera/src/thermo/ThermoPhase.h,
	  Cantera/src/thermo/phasereport.cpp,
	  test_problems/VCSnonideal/NaCl_equil/README,
	  test_problems/VCSnonideal/NaCl_equil/good_dout.txt,
	  test_problems/VCSnonideal/NaCl_equil/good_out.txt,
	  test_problems/VCSnonideal/NaCl_equil/runtest: Made the report
	  function a virtual function within the ThermoPhase class. This
	  means that the function can be modified depending on the
	  inheritance. This allows for the printout of molalities and pH's
	  for liquid phases where appropriate.

	  Took out a duplicate function, report(), in the Cantera
	  namespace.  There was one in cxxutils.cpp and one in
	  phasereport.cpp.

2007-12-20 16:42  hkmoffa

	* Cantera/src/thermo/ThermoPhase.h: Fixed a typo

2007-12-20 15:47  hkmoffa

	* test_problems/: Makefile.in, VCSnonideal/.cvsignore,
	  VCSnonideal/Makefile.in, cathermo/stoichSubSSTP/NaCl_Solid.xml:
	  Committing a few more files to get vcsnonideal test problem to
	  work.

2007-12-20 15:46  hkmoffa

	* test_problems/VCSnonideal/NaCl_equil/: .cvsignore, HMW_NaCl.xml,
	  Makefile.in, NaCl_Solid.xml, README, gas.xml, good_dout.txt,
	  good_out.txt, nacl_equil.cpp, runtest, runtestd,
	  vcs_equilibrate_blessed.csv: commited a test problem.

2007-12-20 15:42  hkmoffa

	* configure, configure.in: Added test directories for VCSnonideal

2007-12-20 15:29  hkmoffa

	* Cantera/src/equil/vcs_MultiPhaseEquil.cpp: Greatly reduced the
	  print levels.

2007-12-20 14:07  hkmoffa

	* Cantera/src/thermo/ThermoFactory.cpp: Bug fix to the newPhase
	  function.

2007-12-20 12:39  hkmoffa

	* Cantera/src/thermo/: HMWSoln.h, IdealSolidSolnPhase.h,
	  StoichSubstanceSSTP.cpp, StoichSubstanceSSTP.h, SurfPhase.cpp,
	  SurfPhase.h, ThermoFactory.h: Added a few constructor routines,
	  directly from file strings.

2007-12-19 14:58  hkmoffa

	* configure, configure.in: Bug fix to make sure Cantera compiles
	  with and without VCSnonideal

2007-12-19 14:55  hkmoffa

	* Cantera/src/equil/equilibrate.cpp: Bug fix to make sure Cantera
	  compiles without VCSnonideal

2007-12-19 14:41  hkmoffa

	* config.h.in: Added the WITH_VCSNONIDEAL flag

2007-12-19 14:40  hkmoffa

	* Cantera/src/thermo/: Makefile.in, ThermoFactory.cpp: Added a few
	  ifdefs for WITH_ options.

2007-12-19 14:23  hkmoffa

	* Cantera/src/equil/Makefile.in: Attached Makefile to configure
	  options for VCSnonideal

2007-12-19 14:22  hkmoffa

	* preconfig: Added WITH_VCSNONIDEAL preconfig line, setting to
	  default off.

2007-12-19 14:21  hkmoffa

	* configure, configure.in: Adding in my output about what gets
	  compiled and what doesn't.  VCSNONIDEAL is now an optional
	  compile

2007-12-19 13:41  hkmoffa

	* preconfig: Changed WITH_ADSORBATE to be a setable variable.

2007-12-19 13:38  hkmoffa

	* Cantera/src/equil/: .cvsignore, equilibrate.cpp: formatting
	  changes.

2007-12-19 13:19  hkmoffa

	* Cantera/src/equil/: Makefile.in, MultiPhaseEquil.cpp,
	  MultiPhaseEquil.h, equilibrate.cpp, vcs_DoubleStarStar.cpp,
	  vcs_DoubleStarStar.h, vcs_Exception.cpp, vcs_Exception.h,
	  vcs_Gibbs.cpp, vcs_IntStarStar.cpp, vcs_IntStarStar.h,
	  vcs_MultiPhaseEquil.cpp, vcs_MultiPhaseEquil.h,
	  vcs_SpeciesProperties.cpp, vcs_SpeciesProperties.h, vcs_TP.cpp,
	  vcs_TV.cpp, vcs_VolPhase.cpp, vcs_VolPhase.h, vcs_dbocls.c,
	  vcs_dbols.c, vcs_defs.h, vcs_dvout.c, vcs_elem.cpp,
	  vcs_elem_rearrange.cpp, vcs_funcVtot.cpp, vcs_inest.cpp,
	  vcs_internal.h, vcs_linmaxc.cpp, vcs_nasa_poly.cpp,
	  vcs_nasa_poly.h, vcs_nondim.cpp, vcs_prep.cpp, vcs_prob.cpp,
	  vcs_prob.h, vcs_rearrange.cpp, vcs_report.cpp, vcs_root1d.cpp,
	  vcs_rxnadj.cpp, vcs_setMolesLinProg.cpp, vcs_solve.cpp,
	  vcs_solve.h, vcs_solve_TP.cpp, vcs_species_thermo.cpp,
	  vcs_species_thermo.h, vcs_timer_generic.cpp, vcs_util.cpp: Added
	  vcs_nonideal, another equilibrium solver that can handle nonideal
	  thermo multiphase systems.

2007-12-19 09:08  hkmoffa

	* Cantera/src/thermo/: GeneralSpeciesThermo.cpp,
	  SpeciesThermoFactory.cpp, WaterSSTP.cpp: Bug fixes for compile
	  case where Adorbate is not included.

2007-12-19 09:06  hkmoffa

	* configure.in: Added more table info on what gets compiled in.

2007-12-19 09:03  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.cpp, IdealSolidSolnPhase.cpp,
	  IdealSolidSolnPhase.h, ThermoFactory.cpp, mix_defs.h: Bug fix for
	  instantiation of these thermo models via the ThermoFactory
	  approach.

2007-12-19 09:00  hkmoffa

	* test_problems/multiGasTransport/Makefile.in: Added .depends to
	  the make all rule.

2007-12-19 08:58  hkmoffa

	* test_problems/min_python/minDiamond/Makefile.in: Added .depends
	  to the Make all rule.

2007-12-19 08:50  hkmoffa

	* test_problems/multiGasTransport/: multiGasTransport.cpp,
	  output_blessed.txt: Changed some formatting to 4 digits from 5. I
	  was having trouble with the last digit changing.

2007-12-19 08:16  hkmoffa

	* Cantera/src/thermo/SimpleThermo.h: Took out a write statement
	  that was causing test failures.

2007-12-19 07:58  hkmoffa

	* examples/cxx/: .cvsignore, Makefile.in: Fixed the depends rule
	  for this test case

2007-12-19 07:32  hkmoffa

	* Cantera/python/ctml_writer.py: Added an id tag to the file

2007-12-17 18:53  dggoodwin

	* Cantera/src/spectra/: LineBroadener.cpp, LineBroadener.h,
	  rotor.cpp: added LineBroadener

2007-12-17 18:41  dggoodwin

	* Cantera/fortran/src/cantera_iface.f90: added cantera_iface

2007-12-17 12:29  hkmoffa

	* test_problems/CpJump/output_blessed.txt: Rebaselined -> soln
	  changed in 5th digit

2007-12-17 12:25  hkmoffa

	* test_problems/multiGasTransport/output_blessed.txt: Rebaselined
	  -> changed in 5th dig due to new constants

2007-12-17 12:24  hkmoffa

	* test_problems/mixGasTransport/output_blessed.txt: Rebaselined

2007-12-17 12:22  hkmoffa

	* test_problems/NASA9poly_test/output_blessed.txt: Rebaselined ->
	  roundoff error

2007-12-17 06:22  dggoodwin

	* Cantera/src/base/ct_defs.h: updated constants to 2006 CODATA
	  recommendations

2007-12-15 09:18  dggoodwin

	* Cantera/src/spectra/: Makefile.in, rotor.cpp, rotor.h: adding
	  support for spectroscopy

2007-12-15 09:15  dggoodwin

	* configure, configure.in, preconfig, Cantera/cxx/Makefile.in,
	  Cantera/fortran/src/Makefile.in, Cantera/fortran/src/cantera.f90,
	  Cantera/fortran/src/cantera_funcs.f90,
	  Cantera/fortran/src/cantera_kinetics.f90,
	  Cantera/fortran/src/cantera_thermo.f90,
	  Cantera/fortran/src/fct.cpp,
	  Cantera/fortran/src/fct_interface.f90,
	  Cantera/python/ctml_writer.py,
	  Cantera/python/Cantera/constants.py,
	  Cantera/python/Cantera/liquidvapor.py, Cantera/src/Makefile.in,
	  Cantera/src/base/ct_defs.h, Cantera/src/base/misc.cpp,
	  Cantera/src/base/units.h,
	  Cantera/src/thermo/GeneralSpeciesThermo.cpp,
	  Cantera/src/thermo/PureFluidPhase.h,
	  Cantera/src/thermo/SimpleThermo.h,
	  Cantera/src/thermo/SpeciesThermoFactory.cpp,
	  Cantera/src/thermo/SpeciesThermoInterpType.h,
	  Cantera/src/thermo/ThermoFactory.cpp,
	  Cantera/src/thermo/mix_defs.h,
	  Cantera/src/thermo/speciesThermoTypes.h,
	  Cantera/src/transport/Makefile.in,
	  Cantera/src/transport/TransportBase.h,
	  Cantera/src/transport/TransportFactory.cpp, data/inputs/air.cti:
	  added spectroscopy support

2007-12-04 10:10  hkmoffa

	* examples/cxx/: Makefile.in, kinetics_example1.cpp,
	  kinetics_example3.cpp, rxnpath_example1.cpp: Updated the Makefile
	  and took out ifdefs.

2007-12-04 09:45  hkmoffa

	* test_problems/Makefile.in: Added cxx_ex test back in.  This test
	  had been failing. It now works due to my recent checkin.  The
	  test is important since it seems to have coverage over areas
	  which aren't covered by other test problems.

2007-12-04 09:37  hkmoffa

	* Cantera/src/zeroD/Reactor.cpp: Decreased the tolerance in the
	  setState_UV() routine. This tolerance is needed for the accurate
	  calculation of Jacobians.

2007-12-04 09:34  hkmoffa

	* Cantera/src/thermo/ThermoPhase.cpp: Fixed an error in
	  setState_UV() and similar routines that was occasionally causing
	  numerical errors in the calculation of Jacobians.  If the
	  tolerances to these routines were set too low for calculation of
	  Jacobians, then the dt*=1.5 logic was causing the evaluation to
	  kick out of the routine with an incorrect deltaU value on the
	  first iteration. This meant that the numerically derived Jacobian
	  entry was off by a factor of 50%.

2007-12-03 14:04  hkmoffa

	* Cantera/python/ctml_writer.py: Bug Fixes to ctml_writer.py. There
	  were some undefined symbols, 'eV' and 'ElectronMass' that were
	  causing all cti to ctml conversions processes using python to
	  fail.  This checkin defines these symbols. The test suite now
	  passes.

2007-12-03 13:46  hkmoffa

	* Cantera/src/thermo/SemiconductorPhase.cpp: Eliminated a doulbe
	  addition case

2007-11-26 14:45  dggoodwin

	* configure, configure.in, preconfig,
	  Cantera/python/Cantera/ReactorNet.py,
	  Cantera/python/examples/equilibrium/multiphase_plasma.py,
	  Cantera/python/src/pycantera.cpp, Cantera/src/base/ct2ctml.cpp,
	  Cantera/src/thermo/SemiconductorPhase.cpp,
	  Cantera/src/thermo/SemiconductorPhase.h,
	  Cantera/src/thermo/mix_defs.h: added SemiconductorPhase

2007-11-11 15:27  hkmoffa

	* test_problems/ChemEquil_gri_matrix/gri_matrix.cpp: Added a solver
	  variable.

2007-11-10 08:31  dggoodwin

	* configure, configure.in, tools/templates/f90/demo.mak.in: fixes
	  to F90 interface

2007-10-29 16:50  hkmoffa

	* test_problems/: CpJump/Makefile.in,
	  multiGasTransport/Makefile.in: Fixed a couple of errors in the
	  Makefiles.  Special cased lapack and blas, and took out a
	  recursive variable defn.

2007-10-29 16:48  hkmoffa

	* test_problems/NASA9poly_test/: Makefile.in, NASA9poly_test.cpp,
	  output_blessed.txt: Updated the test, by adding more output

2007-10-29 07:01  dggoodwin

	* test_problems/NASA9poly_test/Makefile.in: fixed dependency on
	  libctlapack and libctblas

2007-10-28 12:08  hkmoffa

	* ext/f2c_libs/: arith.h, signal1.h, sysdep1.h: These files are
	  autogenerted during the makefile process. Therefore, they don't
	  need to be in the cvs system.

2007-10-26 08:38  hkmoffa

	* test_problems/: Makefile.in, CpJump/.cvsignore,
	  CpJump/CpJump.cpp, CpJump/Makefile.in, CpJump/README.txt,
	  CpJump/bad_air.cti, CpJump/bad_air.xml,
	  CpJump/output_blessed.txt, CpJump/runtest: Added a test CpJump
	  that stresses the new setState_HP() algorithm.  The old undamped
	  newton's method fails on this problem.

2007-10-26 08:37  hkmoffa

	* configure, configure.in: Added a test directory.

2007-10-26 08:34  hkmoffa

	* Cantera/src/thermo/: SpeciesThermoFactory.cpp, ThermoPhase.cpp,
	  ThermoPhase.h: Upgraded algorithm for setState_HP() and friends.
	  Replaced the bare Newton's method with a root finder. This
	  algorithm  is tolerant of step jumps in Thermo parameters at the
	  temperature boundaries.  The algorithm also has an initial
	  treatment of spinodals. Basically, if we are currently liquid, we
	  want to stay liquid. If we are currently gas, we want to stay
	  gas.

2007-10-19 10:11  hkmoffa

	* data/inputs/.cvsignore: Added generated file to the ignore list

2007-10-19 09:59  hkmoffa

	* data/inputs/: .cvsignore, Makefile.in, mkxml.in: Changed the
	  makefile to use the BUILDBIN variable. The converter programs are
	  no longer in ../bin.

2007-10-19 09:54  hkmoffa

	* data/inputs/mkxml: This is now a created file.

2007-10-19 09:48  hkmoffa

	* data/inputs/air.cti: Minor formatting changes.

2007-10-19 08:52  hkmoffa

	* tools/doc/python/.cvsignore: Added a .cvsignore file

2007-10-19 08:50  hkmoffa

	* configure, .cvsignore, configure.in: Added mkxml to the list of
	  "made" files

2007-10-12 14:36  hkmoffa

	* Cantera/src/equil/: ChemEquil.cpp, ChemEquil.h: Changes due to
	  more testing involving UV equil runs on a NASA9 mechanism.	->
	  Changed the damping strategy	  -> Upgraded the initial
	  find-temperature strategy    -> changed the solution tolerance
	  requirements -> sometimes it was	      getting hung up at
	  the end.

2007-10-12 14:33  hkmoffa

	* test_problems/ChemEquil_ionizedGas/: output_blessed.txt, runtest,
	  table_blessed.csv: Rebaselined due to ChemEquil changes.

2007-10-11 14:17  hkmoffa

	* Cantera/src/equil/: ChemEquil.cpp, Makefile.in: Changed
	  tolerances due to a user problem (involving ionized gases)
	  failing.

2007-10-11 14:16  hkmoffa

	* test_problems/ChemEquil_ionizedGas/: output_blessed.txt,
	  table_blessed.csv: Rebaselined, answer changed because of change
	  in alg.

2007-10-11 09:03  hkmoffa

	* Cantera/src/equil/: BasisOptimize.cpp, ChemEquil.cpp,
	  ChemEquil.h, Makefile.in, MultiPhase.h: Changed the Element
	  potential algorithm to accept temperatures that venture out of
	  bounds more. There was a user issue where this cropped up, and
	  triggered a false convergence error.	Upped the debug printouts
	  on this issue too.

2007-10-11 09:01  hkmoffa

	* test_problems/: ChemEquil_ionizedGas/Makefile.in,
	  ChemEquil_ionizedGas/ionizedGasEquil.cpp,
	  ChemEquil_red1/Makefile.in, ChemEquil_red1/basopt_red1.cpp:
	  Updated these tests to use new names of the DEFINES

2007-10-10 08:14  hkmoffa

	* data/inputs/: airNASA9.cti, airNASA9.inp, airNASA9.xml: Added
	  files for NASA9 parameterization of air up to 20000K. The
	  original data for these is in the thermo directory.

2007-10-10 07:59  hkmoffa

	* data/thermo/airDataNASA9.dat: Added an example of a NASA9 data
	  file to the Cantera distribution

2007-10-09 14:02  hkmoffa

	* Cantera/src/thermo/: Nasa9Poly1.cpp,
	  Nasa9PolyMultiTempRegion.cpp: Fixed an error in the entropy
	  calculation for NASA9 polynomials.

2007-10-09 08:23  hkmoffa

	* Cantera/python/ctml_writer.py: Fixed a bug in the conversion of
	  files from cti to ctml format, having to do with NASA9
	  polynomials.	Added a comma to the NASA9 floatArray block.

2007-10-05 19:24  hkmoffa

	* Cantera/src/thermo/GeneralSpeciesThermo.cpp: Fixed an error that
	  affected the calculation of transport properties for mechanisms
	  with all NASA9 species. The max and min temperatures weren't
	  being computed, which caused NaN's to appear during the transport
	  property data fitting procedure.

2007-10-01 17:50  hkmoffa

	* test_problems/cathermo/: HMW_dupl_test/HMW_NaCl_sp1977_alt.xml,
	  HMW_graph_CpvT/HMW_NaCl_sp1977_alt.xml,
	  HMW_graph_GvI/HMW_NaCl.xml,
	  HMW_graph_GvT/HMW_NaCl_sp1977_alt.xml,
	  HMW_graph_HvT/HMW_NaCl_sp1977_alt.xml,
	  HMW_graph_VvT/HMW_NaCl_sp1977_alt.xml,
	  HMW_test_3/HMW_NaCl_tc.xml: Changed the xml files to be update to
	  date with the new PITZER_TEMP_COMPLEX1 format.

2007-10-01 17:49  hkmoffa

	* Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h, HMWSoln_input.cpp:
	  Changed the PITZER_TEMP_COMPLEX1 parameterization to use 5
	  coefficients for beta1 and 5 coefficients for beta2. They are now
	  the same as beta0 and Cphi.  All xml blocks using this
	  parameterization must be modified accordingly.

2007-09-30 08:58  hkmoffa

	* Cantera/src/thermo/HMWSoln.h: Fixed a typo

2007-09-30 08:57  hkmoffa

	* Cantera/python/Cantera/.cvsignore: Added an ignore file

2007-09-27 15:35  dggoodwin

	* apps/bvp/: AxiStagnBVP.cpp, AxiStagnBVP.h,
	  BoundaryValueProblem.h, stagnation.mak: initial import

2007-09-14 09:05  hkmoffa

	* Cantera/src/thermo/: Nasa9Poly1.cpp, Nasa9Poly1.h,
	  Nasa9PolyMultiTempRegion.cpp, Nasa9PolyMultiTempRegion.h: Fixed a
	  bug in reporting parameters for Nasa9MultiTempRegion Changed the
	  Nasa9 reporting parameters routine to be compatible with the
	  multi temperature region reporting parameters.

2007-09-14 07:19  hkmoffa

	* Cantera/python/ctml_writer.py: Missed a file in the NASA9 commit
	  of yesterday

2007-09-13 08:46  hkmoffa

	* Cantera/src/converters/Makefile.in: Added a missing file to the
	  list of objects

2007-09-13 08:12  hkmoffa

	* test_problems/: Makefile.in, NASA9poly_test/.cvsignore,
	  NASA9poly_test/Makefile.in, NASA9poly_test/NASA9poly_test.cpp,
	  NASA9poly_test/gasNASA9.xml, NASA9poly_test/output_blessed.txt,
	  NASA9poly_test/runtest, nasa9_reader/.cvsignore,
	  nasa9_reader/Makefile.in, nasa9_reader/runtest.in,
	  nasa9_reader/sample.inp, nasa9_reader/sample.xml,
	  nasa9_reader/sampleData.inp, nasa9_reader/sample_blessed.cti:
	  Added 2 new tests associated with NASA9 polynomial capability.

2007-09-13 08:07  hkmoffa

	* configure, configure.in: Added new directories for new test
	  problems.

2007-09-13 08:05  hkmoffa

	* Cantera/src/: base/xml.h, converters/CKParser.cpp,
	  converters/CKParser.h, converters/CKReader.cpp,
	  converters/CKReader.h, converters/Makefile.in,
	  converters/NASA9Parser.cpp, converters/Reaction.cpp,
	  converters/Species.cpp, converters/Species.h,
	  converters/ck2ct.cpp, converters/ckr_defs.h,
	  converters/ckr_utils.cpp, converters/thermoFunctions.cpp,
	  converters/writelog.cpp, converters/writelog.h,
	  thermo/ConstCpPoly.h, thermo/GeneralSpeciesThermo.cpp,
	  thermo/GeneralSpeciesThermo.h, thermo/Makefile.in,
	  thermo/Mu0Poly.h, thermo/Nasa9Poly1.cpp, thermo/Nasa9Poly1.h,
	  thermo/Nasa9PolyMultiTempRegion.cpp,
	  thermo/Nasa9PolyMultiTempRegion.h, thermo/NasaPoly1.h,
	  thermo/NasaPoly2.h, thermo/NasaThermo.h, thermo/ShomatePoly.h,
	  thermo/ShomateThermo.h, thermo/SimpleThermo.h,
	  thermo/SpeciesThermo.h, thermo/SpeciesThermoFactory.cpp,
	  thermo/SpeciesThermoInterpType.h, thermo/SpeciesThermoMgr.h,
	  thermo/speciesThermoTypes.h: This checkin adds the ability to
	  read NASA9 polynomial standard states, with arbitrary number of
	  temperature intervals, to Cantera's underlying routines.

	  Cantera can now read fortran formatted NASA9 polynomials to
	  create cti files

	  The cti files can then be translated into xml files.

	  And, the xml files can now be read into constant pressure
	  standard state objects and used normally within the guts of
	  Cantera.

	  Currently, the standard state just links into the
	  GeneralSpeciesThermo object, which means that it's calculation
	  speed is slow. However, atm this satisfies the initial use case
	  for this new capability.

	  In the near future, I'll push this out to the matlab and python
	  interfaces.

2007-09-12 15:10  hkmoffa

	* Cantera/clib/src/Cabinet.h: Added a config.h compiler define in,
	  to handle incompatibilities across platforms.

2007-09-12 15:09  hkmoffa

	* config.h.in, configure, configure.in: Fixed linking errors on
	  cygwin, by special casing how to handle the
	  declaration/definition of static variables in templatized
	  classes.  There is an irreconcilable difference between cygwin
	  and Solaris, that I handled by creating a compiler define in
	  config.h.

2007-09-12 15:02  hkmoffa

	* test_problems/multiGasTransport/: multiGasTransport.cpp,
	  output_blessed.txt: Cutoff low values so that comparisons pass
	  between machines

2007-09-12 14:40  hkmoffa

	* test_problems/mixGasTransport/mixGasTransport.cpp: Fixed a
	  parenthesis misplacement.

2007-09-11 14:00  hkmoffa

	* Cantera/src/thermo/HMWSoln.h: Fixed a spelling mistake.

2007-08-30 14:37  hkmoffa

	* configure, configure.in: Fixed the output from configure. It had
	  erroneous errors when the matlab interface option was turned on.

2007-08-29 14:01  hkmoffa

	* configure, configure.in, preconfig: Changes to the treatment of
	  the PIC environmental variable due to solaris.  preconfig now
	  sets it to null.  Unless the user has set it to something
	  nonnull, configure then resets it to -fPIC for all platforms
	  except for Solaris, where it set to null. Solaris doesn't require
	  -fPIC.

2007-08-29 13:52  hkmoffa

	* Cantera/clib/src/.cvsignore: Added a file

2007-08-29 13:51  hkmoffa

	* Cantera/clib/src/: Cabinet.h, ct.cpp, ctreactor.cpp: Fixed a
	  Solaris compile issue.     Solaris decided a declaration was
	  actually a definition.  So, I changed the way templated static
	  storage is declared. It still needs to be defined once and only
	  once on all platforms.

2007-08-29 13:48  hkmoffa

	* test_problems/multiGasTransport/Makefile.in: Improved the
	  dependencies in the file.

2007-08-29 12:57  hkmoffa

	* Cantera/src/kinetics/: ImplicitSurfChem.cpp, solveSP.cpp,
	  solveSP.h: Solaris Bug fix:	solaris complained about the
	  overload between ioflag as a parameter and as member data. So, I
	  changed the member data name to m_ioflag.

2007-08-28 15:15  hkmoffa

	* Cantera/matlab/Makefile.in: Fixed another error in the make
	  install command (that I created).  The cantera-demos directory
	  wasn't being populated.

2007-08-28 11:59  hkmoffa

	* Cantera/matlab/Makefile.in: Missed installing the main ctmethods*
	  file.  Adding it here.

2007-08-27 09:42  hkmoffa

	* data/thermo/.cvsignore: Added some files that will not be put
	  into the main cantera distribution until some licensing issues
	  are resolved.

2007-08-27 09:35  hkmoffa

	* Cantera/src/thermo/.cvsignore: Added tmp files to this list

2007-08-27 09:32  hkmoffa

	* Cantera/python/examples/flames/.cvsignore: Added a .cvsignore
	  file for this directory. Files that get created when the python
	  scripts are actually run from within the directory are added to
	  the .cvsignore file.

2007-08-23 14:53  hkmoffa

	* Cantera/fortran/src/.cvsignore: added a file

2007-08-23 14:52  hkmoffa

	* configure.in: Added a directory

2007-08-23 14:51  hkmoffa

	* test_problems/Makefile.in: Added a test

2007-08-23 14:51  hkmoffa

	* test_problems/surfSolverTest/: .cvsignore, Makefile.in,
	  haca2.cti, haca2.xml, runtest, runtest2, runtest2_d3, runtest_d3,
	  surfaceSolver.cpp, surfaceSolver2.cpp,
	  surfaceSolver2_blessed.out, surfaceSolver2_blessed3.out,
	  surfaceSolver_blessed.out, surfaceSolver_blessed3.out: Added two
	  more tests that exercise the surface solver capability.

2007-08-23 14:43  hkmoffa

	* Cantera/src/kinetics/: ImplicitSurfChem.cpp, ImplicitSurfChem.h,
	  InterfaceKinetics.cpp, InterfaceKinetics.h, Makefile.in,
	  solveSP.cpp, solveSP.h: Added a capability to solve the surface
	  pseudosteady state problem via a damped newton's method. It also
	  employs a false transient algorithm when far from the solution.

2007-07-31 14:14  hkmoffa

	* Cantera/src/transport/: TransportFactory.cpp, TransportFactory.h:
	  Fixed the order of initializations so that it wouldn't produce a
	  warning message.  Doxygen additions.

2007-07-31 14:12  hkmoffa

	* Cantera/src/transport/TransportBase.h: Added a m_nDim field to
	  the base class. It seemed like the right place to put it. Though,
	  it's not used atm.

2007-07-31 14:11  hkmoffa

	* Cantera/src/transport/MixTransport.h: Doxygen update - changes to
	  comments made pressure_ig() a const function

2007-07-31 14:08  hkmoffa

	* test_problems/Makefile.in: Added the multiGasTransport test

2007-07-31 14:05  hkmoffa

	* configure, configure.in: Added a test directory.

2007-07-31 14:04  hkmoffa

	* test_problems/multiGasTransport/: .cvsignore, Makefile.in,
	  gri30.xml, multiGasTransport.cpp, output_blessed.txt, runtest:
	  Addition of basic test for multiTransport object.  This just
	  picks an arbitrary condition, calculates all of the interfacial
	  properties, and dumps it to an ascii file.  We want to ensure
	  that the answer doesn't change over time.

2007-07-31 13:51  hkmoffa

	* configure, configure.in: Added a directory

2007-07-31 13:50  hkmoffa

	* test_problems/Makefile.in: Added a test

2007-07-31 13:33  hkmoffa

	* test_problems/mixGasTransport/: .cvsignore, Makefile.in,
	  gri30.xml, mixGasTransport.cpp, output_blessed.txt, runtest:
	  Added a simple test that exercises the mixture gas transport
	  object on an arbitrary point. It produces an answer. The blessed
	  file will make sure the answer doesn't change going forward.

2007-07-31 10:28  hkmoffa

	* Cantera/src/transport/MixTransport.h: Fixed an interface error in
	  getSpeciesViscosities().     This seldom used interface function
	  needed to ensure that update_T() is  called so that the
	  temperature is current.

2007-07-27 15:21  hkmoffa

	* Cantera/matlab/Makefile.in: Changed the Makefile scripts so that
	  INSTALL doesn't need to handle copying multiple files during a
	  single invocation.

2007-07-27 13:05  hkmoffa

	* Cantera/src/converters/ck2ct.h: Added a str:: to a string
	  parameter

2007-07-26 20:37  dggoodwin

	* Cantera/src/transport/: MMCollisionInt.cpp, TransportFactory.cpp,
	  TransportFactory.h: made some log message writing optional

2007-07-26 20:27  dggoodwin

	* configure.in: changed default for @INSTALL@ back, because it was
	  failing for MATLAB files

2007-07-26 17:32  hkmoffa

	* Cantera/src/transport/TransportFactory.h: Doxygen update - no
	  code change

2007-07-26 17:25  hkmoffa

	* Cantera/src/transport/: MixTransport.cpp, MixTransport.h,
	  MultiTransport.h, TransportBase.h: Doxygen update: no code
	  changes Added a cLiquidTransport for an electrolyte transport
	  capability   under construction

2007-07-26 17:09  hkmoffa

	* Cantera/src/transport/: MixTransport.cpp, MixTransport.h,
	  MultiTransport.cpp, MultiTransport.h, TransportBase.h: Doxygen
	  update   Documented the getSpeciesFluxes interface   Changed a
	  doublereal * grad_T parameter to const doublereal * grad_T
	  parameter.

2007-07-26 14:55  hkmoffa

	* Cantera/src/: base/XML_Writer.h, transport/L_matrix.h,
	  transport/MMCollisionInt.h, transport/SolidTransport.h,
	  transport/TransportFactory.h, transport/TransportParams.h: Took
	  out using namespace std from a couple of .h files.

2007-07-24 10:37  hkmoffa

	* configure, configure.in: During an out-of-the-box preconfig run,
	  the user will unwillingly ask for a FULL python installation, but
	  will inevitably fail because neither the numarray or numeric
	  package has been installed.  Now, a check is made during the raw
	  preconfig run to see if the include files for the numarray
	  package can be found. If they can't be found and the python
	  installation option is set to default, then the python build
	  variable is set to 1, reducing python to a minimal installation.

	  In most cases, the raw out-of-the-box   preconfig   make   make
	  test

	  steps will now work. Whereas before, there were compile errors
	  occurring because the numarray include files were not able to be
	  found.

	  More information about the SUNDIALS installation is now printed
	  out.

	  CVS

2007-07-24 10:29  hkmoffa

	* preconfig: Changed the default SUNDIALS_HOME setting to blank.
	  This coincides with what is assumed in the configure.in file, and
	  avoids potential problems with spaces in $HOME that frequently
	  appear on cygwin installations.

2007-07-24 10:24  hkmoffa

	* test_problems/min_python/negATest/runtest: Fixed path to
	  elements.xml

2007-07-24 10:20  hkmoffa

	* test_problems/pureFluidTest/runtest: Fixed the path to the
	  default location of elements.xml

2007-07-18 14:27  hkmoffa

	* Cantera/src/thermo/State.cpp: Fixed an error in the function
	  setMoleFractions_NoNorm().  The error was introduced in v. 1.2 of
	  this file on 5/4/07, and lead to bad values for output mass
	  fractions.

2007-07-18 13:21  hkmoffa

	* test_problems/cathermo/: HMW_test_1/output_noD_blessed.txt,
	  HMW_test_3/output_noD_blessed.txt: Rebaselined two files, due to
	  textual changes in the output

2007-07-18 12:27  hkmoffa

	* Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h: Cropping Update
	  -Did a better job at coming up with cropping strategy for
	  molalalities	  which are used for the calculation of the
	  activity coefficents.     Without such a strategy, act coeffs may
	  become unbounded and	   cause the equilibrium solver to fail.

2007-07-13 10:23  hkmoffa

	* configure, configure.in, preconfig: Changed the default INSTALL
	  program from whatever autoconf found using the macro
	  AC_PROG_INSTALL to the program config/install-sh, which was the
	  backup option for AC_PROG_INSTALL anyway.

	  The driving reason for this was that the default /usr/bin/install
	  program on linux had problems when directories under
	  $(CANTERA_ROOT)/build weren't owned by installing user. Note,
	  this can happen in a collaborative environment when multiple
	  people have group rw on the source/build directory.

	  However, in general, this should help cross-platform variability
	  issues, since there is less variability now.

	  The user can override config/install-sh choice by setting the
	  environmental variable INSTALL_BIN in the preconfig script.

2007-07-13 10:15  hkmoffa

	* Cantera/cxx/include/: Edge.h, IncompressibleSolid.h, Interface.h,
	  Metal.h: Fixed compilation errors on solaris.  Solaris picks up
	  const and non-const differences between parent and child member
	  functions.

2007-07-13 09:52  hkmoffa

	* Cantera/fortran/src/fct.cpp: Fixed a compile problem that
	  occurred on solaris

2007-07-13 08:55  hkmoffa

	* Cantera/src/thermo/HMWSoln.cpp: Fixed compilation problems on
	  solaris

2007-07-13 08:19  hkmoffa

	* Makefile.in: Fixed an install command, so that it only does one
	  file at a time.

2007-07-13 07:53  hkmoffa

	* Cantera/clib/src/Makefile.in: Added a -c to the install command.
	  This is needed for the built-in install command.

2007-07-12 12:52  hkmoffa

	* Makefile.in: Added a file to clean rule that frequently gets
	  created and not destroyed

2007-07-12 12:44  hkmoffa

	* Cantera/fortran/src/Makefile.in: Added an all: rule.

2007-07-12 12:40  hkmoffa

	* Makefile.in: added -c to the install line, so that the default
	  install-sh will do a "cp" instead of a "mv".

2007-07-12 12:37  hkmoffa

	* Cantera/src/base/ctml.h: Eliminated a commented out line.

2007-07-12 12:36  hkmoffa

	* Cantera/src/equil/equil.h: doxygen update   added brackets to a
	  module.

2007-07-12 12:34  hkmoffa

	* Cantera/src/zeroD/Makefile.in: Added a rm *.d to the clean rule.

2007-07-12 12:33  hkmoffa

	* tools/: Makefile.in, doc/doxyinput/edemo.cpp: Added -c to the
	  install line, so that the default install-sh will do a "cp"
	  operation and not a "mv" operation.

2007-07-12 12:28  hkmoffa

	* Cantera/cxx/Makefile.in: Added a rm .depends to the clean rule.

2007-07-12 12:26  hkmoffa

	* Cantera/cxx/demos/Makefile.in: Added a -c argument to @INSTALL@,
	  so that the default config/install-sh will do a "cp" instead of a
	  "mv".

2007-07-12 07:22  hkmoffa

	* Cantera/src/equil/BasisOptimize.cpp: Compilation error in an
	  optional #ifdef block.

2007-07-11 18:04  hkmoffa

	* bin/install_tsc.in: Added a -c to the install command. Note, it
	  probably doesn't matter unless you are using the
	  config/install-sh version, in which case, the change alters the
	  command from a 'mv' to a 'cp' command.

2007-07-11 17:58  hkmoffa

	* ext/f2c_libs/Makefile.in: Added -c command to the @INSTALL@. It
	  doesn't matter unless the install command is config/install-sh.
	  For the later, it changes mv to a cp command.

2007-07-03 04:42  dggoodwin

	* Cantera/src/numerics/Makefile.in: added flags

2007-07-03 04:38  dggoodwin

	* Cantera/src/thermo/: MetalPhase.h, SurfPhase.h: added missing
	  methods to MetalPhase, made 2 methods of SurfPhase virtual

2007-07-02 13:54  hkmoffa

	* test_problems/ChemEquil_ionizedGas/: Makefile.in, runtest: Fixed
	  an error in runtest

2007-06-26 15:28  hkmoffa

	* Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h, IdealMolalSoln.h:
	  Doxygen update.     completed HMWSoln header information.

2007-06-26 10:43  hkmoffa

	* Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h: Doxygen update	->
	  fixing documentation for functions.

2007-06-26 10:03  hkmoffa

	* Cantera/src/thermo/: HMWSoln.h, HMWSoln_input.cpp: Doxygen Update
	  Worked on the header.  Change of LambdaNeutral XML input
	  section   changed the attributes to species1 and species2 to be
	  more in tune	 with the conventions in the rest of the input
	  file. I don't think	this section is used anywhere yet

2007-06-21 07:58  hkmoffa

	* Cantera/src/thermo/HMWSoln.h: Doxygen update	-worked on the
	  header

2007-06-20 14:42  hkmoffa

	* Cantera/src/thermo/HMWSoln.h: Doxygen update	 - worked on the
	  header.

2007-06-19 07:54  hkmoffa

	* Cantera/src/thermo/HMWSoln.h: Doxygen Update	 -> Worked on the
	  header, trying to document the format of the	    XML input file.

2007-06-18 09:13  hkmoffa

	* tools/doc/Cantera.cfg.in: Added HMWSoln. It's sufficiently far
	  along.

2007-06-18 09:12  hkmoffa

	* Cantera/src/thermo/: HMWSoln.h, HMWSoln_input.cpp: Doxygen Update
	  -> Worked on the header

2007-06-17 13:56  hkmoffa

	* Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h, HMWSoln_input.cpp:
	  Doxygen update - Update of Header files

2007-06-15 16:08  hkmoffa

	* Cantera/src/kinetics/importKinetics.cpp: Fixed a divide by zero
	  in the function checkRxnElementBalance()

2007-06-15 09:38  hkmoffa

	* Cantera/src/thermo/HMWSoln.h: Doxygen Update	 -> added more
	  formulas to the header

2007-06-14 16:40  hkmoffa

	* Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h: Doxygen Update
	  Worked on the class header information.

2007-06-14 08:05  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h,
	  HMWSoln_input.cpp: Doxygen update   -> Eliminated all of the
	  doxygen warnings. However, there is a long	  way to go in
	  documenting the HMWSoln header file.

2007-06-13 11:53  hkmoffa

	* Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h, ThermoFactory.cpp,
	  mix_defs.h: Doxygen update   -> added more member data
	  documentation to HMWSoln Added DebyeHuckel and IdealMolalSoln to
	  the ThermoFactory

2007-06-13 07:36  hkmoffa

	* Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h: Doxygen update	-
	  documented some member data Changed names to make it more
	  readable.

2007-06-12 17:17  hkmoffa

	* Cantera/src/thermo/ThermoPhase.h: Made minTemp() and maxTemp()
	  const functions, to make the paradigm consistent.

2007-06-12 17:08  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp,
	  HMWSoln.h, IdealMolalSoln.cpp, IdealMolalSoln.h,
	  IdealSolidSolnPhase.cpp, IdealSolidSolnPhase.h,
	  MolalityVPSSTP.cpp, MolalityVPSSTP.h, Phase.cpp, Phase.h,
	  StoichSubstance.cpp, StoichSubstance.h, StoichSubstanceSSTP.cpp,
	  StoichSubstanceSSTP.h, ThermoPhase.cpp, ThermoPhase.h: Made
	  several routines const that should be const
	  getUnitStandardConc  and in Phase::nDim and getMolecularWeight()

2007-06-12 12:39  hkmoffa

	* Cantera/src/thermo/: HMWSoln.h, HMWSoln_input.cpp: Doxygen update
	  Added function documentation.  Added error checking on input

2007-06-12 12:14  hkmoffa

	* Cantera/src/thermo/: ConstDensityThermo.h, DebyeHuckel.cpp,
	  DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h, IdealMolalSoln.cpp,
	  IdealMolalSoln.h, LatticePhase.h, SingleSpeciesTP.h,
	  StoichSubstance.cpp, StoichSubstance.h, StoichSubstanceSSTP.cpp,
	  StoichSubstanceSSTP.h, ThermoPhase.h: Turned the virtual
	  function,getParameters(), to getParameters() const

2007-06-12 10:35  hkmoffa

	* Cantera/src/kinetics/: InterfaceKinetics.cpp,
	  InterfaceKinetics.h: Roughed in a new function,
	  solvePseudoSteadyStateProblem()

2007-06-12 10:33  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h,
	  IdealMolalSoln.h, IdealSolidSolnPhase.h, WaterSSTP.h: Made
	  constructPhaseFile() and constructPhaseXML() non-virtual.  They
	  are called from the constructor, and it generally is a tricky
	  situation when virtual functions are called from constructors.

2007-06-12 08:52  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.h, HMWSoln.h: Doxygen update
	  -> started adding doxygen docs for HMWSoln.

2007-06-12 07:42  hkmoffa

	* Cantera/src/kinetics/: ImplicitSurfChem.cpp, ImplicitSurfChem.h:
	  doxygen updated - no changes to source code	Added docs for some
	  functions.

2007-06-12 07:20  hkmoffa

	* Cantera/src/kinetics/ReactionStoichMgr.h: doxygen update   Added
	  docs

2007-06-12 07:13  hkmoffa

	* Cantera/src/kinetics/Kinetics.h: Doxygen update   Added docs.
	  Took out ingroup kinetics -> doesn't seem to be a module named
	  kinetics     any more.

2007-06-12 07:07  hkmoffa

	* Cantera/src/kinetics/Makefile.in: Added a RM to the depends rule.

2007-06-11 12:01  hkmoffa

	* Cantera/src/thermo/: ThermoFactory.h, WaterPropsIAPWS.cpp,
	  WaterPropsIAPWS.h: Doxygen Update   -> Finished removing all
	  warning messages.

2007-06-11 09:23  hkmoffa

	* Cantera/src/base/utilities.h: Doxygen update	 documented
	  timesConstant and polynomial routines.

2007-06-11 09:01  hkmoffa

	* Cantera/src/thermo/: ThermoFactory.cpp, ThermoFactory.h: doxygen
	  update    Added documentation for undocumented functions.

2007-06-11 08:22  hkmoffa

	* tools/doc/Cantera.cfg.in: Added the clockWC class to the doxygen
	  docs.

2007-06-11 08:20  hkmoffa

	* Cantera/cxx/include/Cantera.h: Added the clockWC.h include to the
	  c++ interface.

2007-06-11 08:20  hkmoffa

	* Cantera/src/base/: CMakeLists.txt, Makefile.in, clockWC.cpp,
	  clockWC.h: Wall Clock Timer:	 Added class that implements a
	  simple wall clock timer

2007-06-08 08:13  hkmoffa

	* Cantera/src/base/: Array.h, misc.cpp, units.h: Doxygen update
	  -> eliminated some doxygen warnings.

2007-06-08 08:01  hkmoffa

	* Cantera/src/thermo/: SimpleThermo.h, SpeciesThermoFactory.cpp,
	  SpeciesThermoFactory.h, SpeciesThermoMgr.h, ThermoFactory.h:
	  doxygen update-   This contains changes to comments, to reduce
	  number of dox warnings.

2007-06-05 08:17  hkmoffa

	* Cantera/src/thermo/: EdgePhase.h, IdealGasPDSS.cpp,
	  IdealGasPDSS.h, IdealMolalSoln.h, LatticePhase.cpp,
	  LatticePhase.h, LatticeSolidPhase.cpp, LatticeSolidPhase.h,
	  MetalPhase.h, PDSS.h, PureFluidPhase.cpp, PureFluidPhase.h,
	  SingleSpeciesTP.cpp, SingleSpeciesTP.h, StoichSubstanceSSTP.cpp,
	  StoichSubstanceSSTP.h, SurfPhase.cpp, VPStandardStateTP.h: Filled
	  the copy constructors, assignment operators, and duplication
	  functions for the remaining ThermoPhase objects.

2007-06-04 16:09  hkmoffa

	* Cantera/src/kinetics/: Kinetics.h, importKinetics.cpp,
	  importKinetics.h: Made getReagents global and addPhase virtual.

2007-06-04 16:05  hkmoffa

	* Cantera/src/kinetics/ReactionData.h: Changed the destructor to be
	  virtual.

2007-06-04 16:02  hkmoffa

	* Cantera/src/kinetics/: InterfaceKinetics.cpp,
	  InterfaceKinetics.h: Added a routine to return the elctrochemical
	  beta for a reaction.	Fixed an error in a debug printout routine
	  that tests when the BV factor may overwhelm the activation
	  energy, and I moved the printout to DEBUG_MODE.

2007-06-04 11:42  hkmoffa

	* configure.in: Added a test directory.

2007-06-04 11:41  hkmoffa

	* test_problems/: Makefile.in, cathermo/Makefile.in,
	  cathermo/DH_graph_NM/.cvsignore,
	  cathermo/DH_graph_acommon/.cvsignore,
	  cathermo/DH_graph_bdotak/.cvsignore, diamondSurf_dupl/.cvsignore,
	  diamondSurf_dupl/Makefile.in, diamondSurf_dupl/diamond.xml,
	  diamondSurf_dupl/output_blessed.txt,
	  diamondSurf_dupl/runDiamondDupl.cpp, diamondSurf_dupl/runtest:
	  Added a test problem for the duplication of common ThermoPhase
	  objects like IdealGasPhase and SurfPhase.

2007-06-04 11:39  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.h, HMWSoln.h, IdealGasPhase.cpp,
	  IdealGasPhase.h, StoichSubstance.cpp, StoichSubstance.h,
	  SurfPhase.cpp, SurfPhase.h, ThermoPhase.h: Copy constructors,
	  assignment operators, and duplicators:    Extended these to the
	  more common ThermoPhase objects.

2007-06-01 18:07  hkmoffa

	* test_problems/ChemEquil_ionizedGas/: .cvsignore,
	  ionizedGasEquil.cpp, output_blessed.txt, runtest,
	  table_blessed.csv: Rebaselined the problem. There were minor
	  changes in the solution. Moved the test to a csv comparison which
	  can differentiate between large and small differences.

2007-06-01 17:14  hkmoffa

	* test_problems/cathermo/HMW_dupl_test/: .cvsignore,
	  HMW_NaCl_sp1977_alt.xml, HMW_dupl_test.cpp, Makefile.in,
	  NaCl_Solid.xml, README, TemperatureTable.h, output_blessed.txt,
	  runtest, sortAlgorithms.cpp, sortAlgorithms.h: Added another test
	  problem that checks the duplMyselfAsThermoPhase capability.

2007-06-01 17:02  hkmoffa

	* Cantera/src/base/: xml.cpp, xml.h: Wrote a valid copy constructor
	  and assignment operator for XML_Node, and made them public.

	  It turns out the Cabinet.h routines needed these. Previously,
	  they were using the compiler default routines, which was a bug.
	  Now, they are using explicit routines. Note, these new routines
	  have not been checked. However, they do have the chance of being
	  correct.

2007-06-01 16:44  hkmoffa

	* Cantera/src/thermo/: ConstDensityThermo.cpp,
	  ConstDensityThermo.h, Constituents.cpp, DebyeHuckel.cpp,
	  GeneralSpeciesThermo.cpp, HMWSoln.cpp, NasaThermo.h, PDSS.cpp,
	  PDSS.h, Phase.cpp, Phase.h, ShomateThermo.h, SimpleThermo.h,
	  SpeciesThermo.h, SpeciesThermoMgr.h, State.cpp, ThermoPhase.cpp,
	  WaterPDSS.cpp, WaterPDSS.h, WaterProps.cpp, WaterPropsIAPWS.cpp,
	  WaterPropsIAPWS.h, WaterPropsIAPWSphi.cpp: Bugfix checkin to get
	  the duplMyselfAsThermoPhase() routines working.

	  Bugs include quite a few errors in the copy constructors and
	  assignment operator functions, which, for most of them, have been
	  checked against a sample problem, HMW_dupl_test, for the very
	  first time.

	  Note, the duplMyselfAsThermoPhase() routines are now working.

2007-06-01 16:36  hkmoffa

	* Cantera/src/base/: stringUtils.h, xml.cpp, xml.h: Changed the
	  copy() and copyUnion() functions to be const.  Declared the
	  XML_Node copy constructor and assignment operators to be private
	  -> they don't work, so accidently invoking them is an error. Now,
	  a compilation error will occur.  Note, the copy() routine can be
	  used instead to create copies of XML trees.

2007-06-01 12:12  hkmoffa

	* Cantera/src/thermo/: ConstDensityThermo.cpp,
	  ConstDensityThermo.h, GeneralSpeciesThermo.cpp,
	  GeneralSpeciesThermo.h, MolalityVPSSTP.cpp, NasaThermo.h,
	  ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h,
	  SpeciesThermoMgr.h, ThermoPhase.cpp: Added copy constructors and
	  assignment operators where they were missing. Working towards
	  getting the duplicate member functions to work.

2007-06-01 08:31  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp,
	  HMWSoln.h, IdealMolalSoln.cpp, IdealMolalSoln.h,
	  IdealSolidSolnPhase.cpp, IdealSolidSolnPhase.h,
	  MolalityVPSSTP.cpp, MolalityVPSSTP.h, State.cpp, ThermoPhase.cpp,
	  ThermoPhase.h, VPStandardStateTP.cpp, VPStandardStateTP.h,
	  WaterSSTP.cpp, WaterSSTP.h: Changed the duplMyselfAsThermoPhase
	  function to be a const function (trying to keep a unified view of
	  what are const and non-const functions within the ThermoPhase
	  classes)

2007-05-31 16:51  hkmoffa

	* Cantera/src/converters/: Reaction.h, RxnSpecies.h, ck2ct.cpp,
	  ckr_defs.h: Fixed a UMR in Reaction.h that was causing optimized
	  versions of ck2cti to hang or seg fault sometimes.

	  Added some exceptions that captures cases where the thermo
	  parameters for a molecule were not found in the database.  Now,
	  an error exit occurs, instead of before, where misc garbage but
	  written to the output file.

2007-05-29 03:38  dggoodwin

	* Cantera/src/kinetics/importKinetics.cpp: correcting
	  recently-introduced bug

2007-05-24 14:09  hkmoffa

	* Cantera/src/thermo/: SurfPhase.cpp, SurfPhase.h: Added missing
	  partial molar functions.

2007-05-20 15:22  hkmoffa

	* test_problems/cathermo/: DH_graph_1/DH_NaCl_dilute.xml,
	  DH_graph_NM/DH_NaCl_NM.xml, DH_graph_Pitzer/DH_NaCl_Pitzer.xml,
	  DH_graph_acommon/DH_NaCl_acommon.xml, DH_graph_acommon/runtest,
	  DH_graph_bdotak/DH_NaCl_bdotak.xml,
	  HMW_graph_CpvT/HMW_NaCl_sp1977_alt.xml,
	  HMW_graph_GvI/HMW_NaCl.xml,
	  HMW_graph_GvT/HMW_NaCl_sp1977_alt.xml,
	  HMW_graph_HvT/HMW_NaCl_sp1977_alt.xml,
	  HMW_graph_VvT/HMW_NaCl_sp1977_alt.xml, HMW_test_1/HMW_NaCl.xml,
	  HMW_test_3/HMW_NaCl_tc.xml: Change some input files to ensure
	  that charge and the element composition of E are in line with
	  each other.

2007-05-20 15:21  hkmoffa

	* Cantera/src/thermo/: Constituents.cpp, SpeciesThermoFactory.cpp,
	  WaterPDSS.cpp, phasereport.cpp: Added a Check between the input
	  charge and the composition of the "E" element. At this point
	  there doesn't seem to be a reason to let meaning of the
	  definition of charge() and the elemental composition of E in each
	  species to diverge.

2007-05-18 03:54  dggoodwin

	* Cantera/src/kinetics/EdgeKinetics.cpp,
	  Cantera/src/kinetics/EdgeKinetics.h,
	  Cantera/src/kinetics/InterfaceKinetics.cpp,
	  Cantera/src/kinetics/InterfaceKinetics.h,
	  Cantera/src/kinetics/Makefile.in, CMakeLists.txt, config.cmake,
	  Cantera/python/Cantera/Kinetics.py,
	  Cantera/python/src/ctkinetics_methods.cpp,
	  Cantera/src/thermo/CMakeLists.txt, cmake/fortran.cmake:
	  EdgeKinetics now derives from InterfaceKinetics, and
	  InterfaceKinetics has the beta parameter for electrochemistry

2007-05-17 14:17  hkmoffa

	* Cantera/src/kinetics/StoichManager.h: doxygen change
	  reformated some comments.

2007-05-17 14:16  hkmoffa

	* Cantera/src/kinetics/Kinetics.cpp: Took out the ReactionData.h
	  include. The kinetics class doesn't use it.

2007-05-17 08:02  hkmoffa

	* Cantera/src/thermo/: SurfPhase.cpp, SurfPhase.h, ThermoPhase.cpp:
	  Added several missing thermodynamics routines to SurfPhase
	  object.

	  Added error checking to make sure that a ThermoPhase object has
	  at least one species defined in it. Currently, it just won't work
	  if there are 0 species in the object, so we might as well throw
	  an error early to indicate this.

	  Added error checking to the SurfPhase object to indicate when
	  setCoverages is called with no coverages specified. This
	  condition had caused NaN's. Now, it throws a CanteraError.

2007-05-14 07:37  hkmoffa

	* tools/doc/Cantera.cfg.in: Added a dir.  Added more predefines.

2007-05-13 18:02  hkmoffa

	* Cantera/src/kinetics/: InterfaceKinetics.cpp,
	  InterfaceKinetics.h: Doxygen updates -> worked on documenting
	  functions Changed a few functions from private to protected so
	  that they would be available to derived classes

2007-05-13 18:00  hkmoffa

	* Cantera/src/base/: FactoryBase.h, global.h, misc.cpp: Doxygen
	  update -> Eliminating warning messages.

2007-05-12 07:42  dggoodwin

	* cmake/fortran.cmake: support for cmake

2007-05-12 05:55  dggoodwin

	* configure, configure.in, Cantera/python/setup.py.in,
	  ext/f2c_libs/arith.h, tools/templates/f90/demo.mak.in: bug fixes

2007-05-11 16:11  hkmoffa

	* Cantera/src/kinetics/: GasKinetics.h, InterfaceKinetics.cpp,
	  InterfaceKinetics.h: Doxygen update of some kinetics classes.
	  Have a ways to go before these are documented.

2007-05-11 14:44  hkmoffa

	* Cantera/src/base/: global.h, misc.cpp: Added doxygen
	  documentation. still needs work to get all the new stuff covered.

2007-05-11 13:58  dggoodwin

	* configure, configure.in, preconfig, Cantera/python/setup.py.in:
	  bug fixes

2007-05-11 12:56  hkmoffa

	* tools/doc/Cantera.cfg.in: Added PREDEFINES. Apparently, the
	  current config.h setup doesn't get passed through doxygen's
	  predefines. Therefore, modules aren't being read into the doxygen
	  documentation. The solution is to artificially define PREDEFINES,
	  so that doxygen can operate correctly.

2007-05-11 12:54  hkmoffa

	* Cantera/src/thermo/PureFluidPhase.h: Took out config.h include.
	  Doxygen preprocessing is at fault, and it can be fixed through
	  the doxygen input file.

2007-05-11 12:29  dggoodwin

	* configure, configure.in, preconfig, Cantera/python/setup.py.in,
	  ext/math/Makefile.in, ext/math/printstring.c: bug fixes

2007-05-11 10:40  hkmoffa

	* Cantera/src/equil/: MultiPhase.cpp, MultiPhase.h: Added an
	  IntEnergy calculation routine.

2007-05-11 10:37  hkmoffa

	* Cantera/src/base/ctexceptions.h: Added a namespace declaration to
	  Assert commands, that's needed in applications.

2007-05-11 10:34  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp,
	  HMWSoln.h, IdealMolalSoln.cpp, VPStandardStateTP.cpp,
	  VPStandardStateTP.h: Fixed a bug in the calculation of reference
	  state values, for thermophase objects that derive from
	  VPStandardStateTP

2007-05-11 10:31  hkmoffa

	* Cantera/src/thermo/WaterSSTP.h: Took out bad documentation
	  statements.

2007-05-11 10:30  hkmoffa

	* Cantera/src/thermo/: MolalityVPSSTP.cpp, ThermoPhase.cpp,
	  ThermoPhase.h: Added	a :chargeNeutralityNecessary() function and
	  boolean.  If charge neutrality is necessary for the proper
	  specification of thermo functions, this is true. If not it's set
	  to false.  Currently, it's true for molality based formulations,
	  and false otherwise. It's false for Ideal gases.

2007-05-11 10:21  hkmoffa

	* Cantera/src/thermo/PureFluidPhase.h: Added a specific include
	  config.h command, because doxygen wasn't recognizing it.

2007-05-11 10:19  hkmoffa

	* tools/doc/Cantera.cfg.in: Added additional directories so that
	  doxygen can find the files.

2007-05-10 13:22  dggoodwin

	* configure, configure.in, preconfig, Cantera/cxx/src/Makefile.in,
	  Cantera/fortran/src/Makefile.in, Cantera/src/base/utilities.h,
	  Cantera/src/equil/BasisOptimize.cpp,
	  Cantera/src/thermo/State.cpp, ext/f2c_libs/arith.h,
	  tools/src/Makefile.in: minor bug fixes

2007-05-10 11:39  dggoodwin

	* Cantera/src/base/FactoryBase.h: added FactoryBase.h

2007-05-10 10:59  dggoodwin

	* CMakeLists.txt, config.cmake, config.h.in, config.h_cmake.in,
	  Cantera/CMakeLists.txt, Cantera/src/CMakeLists.txt,
	  Cantera/src/base/CMakeLists.txt: adding support for cmake.

2007-05-09 20:28  dggoodwin

	* config.h.in, configure, configure.in, preconfig,
	  Cantera/clib/src/Makefile.in, Cantera/python/setup.py.in,
	  Cantera/src/base/Makefile.in, Cantera/src/base/global.h,
	  Cantera/src/base/misc.cpp, Cantera/src/base/units.h,
	  Cantera/src/equil/BasisOptimize.cpp,
	  Cantera/src/equil/ChemEquil.cpp, Cantera/src/equil/ChemEquil.h,
	  Cantera/src/equil/MultiPhase.cpp,
	  Cantera/src/equil/MultiPhaseEquil.cpp,
	  Cantera/src/equil/MultiPhaseEquil.h,
	  Cantera/src/equil/equilibrate.cpp,
	  Cantera/src/kinetics/FalloffFactory.cpp,
	  Cantera/src/kinetics/FalloffFactory.h,
	  Cantera/src/kinetics/FalloffMgr.h,
	  Cantera/src/kinetics/KineticsFactory.cpp,
	  Cantera/src/kinetics/KineticsFactory.h,
	  Cantera/src/kinetics/importKinetics.cpp,
	  Cantera/src/thermo/SpeciesThermoFactory.cpp,
	  Cantera/src/thermo/SpeciesThermoFactory.h,
	  Cantera/src/thermo/ThermoFactory.cpp,
	  Cantera/src/thermo/ThermoFactory.h,
	  Cantera/src/transport/TransportFactory.cpp,
	  Cantera/src/transport/TransportFactory.h,
	  Cantera/src/zeroD/Makefile.in,
	  Cantera/src/zeroD/ReactorFactory.cpp,
	  Cantera/src/zeroD/ReactorFactory.h, ext/f2c_libs/arith.h,
	  test_problems/diamondSurf/Makefile.in,
	  test_problems/min_python/minDiamond/Makefile.in,
	  test_problems/min_python/negATest/Makefile.in,
	  test_problems/negATest/Makefile.in,
	  test_problems/pureFluidTest/Makefile.in,
	  test_problems/silane_equil/Makefile.in,
	  test_problems/surfkin/Makefile.in: added thread safety option

2007-05-06 10:16  hkmoffa

	* Cantera/: Makefile.in, src/Makefile.in: Fixed the make clean
	  rule.

2007-05-06 10:15  hkmoffa

	* test_problems/: Makefile.in, ChemEquil_gri_matrix/Makefile.in,
	  cathermo/Makefile.in: Fixed the Make clean rule. Have to
	  eliminate .depends before make is called, because the rule to
	  'make .depends' was being called on invocation if .depends
	  exists.

2007-05-04 17:30  hkmoffa

	* Cantera/cxx/src/importPhase.cpp: forgot a file.

2007-05-04 17:29  hkmoffa

	* Cantera/cxx/: include/importPhase.h, src/Makefile.in,
	  src/cxxutils.cpp: Fixed an error that occurred during linking of
	  applications.  There were multiple definitions of
	  importPhase(string, string), one per application file.  I moved
	  the definition of importPhase to libctxx.a as it had to be in an
	  object file, and I retained the declaration within importPhase.h.
	  I also added declarations for the other functions in libctxx.a
	  into importPhase.h, as they weren't declared anywhere in the
	  interface.

2007-05-04 13:09  hkmoffa

	* Cantera/src/kinetics/Makefile.in: Added a missing .h file.

2007-05-04 12:47  hkmoffa

	* configure.in: Changed the order Cantera libraries in the LINKER
	  statements that come out of autoconf. An unsatisfied external
	  occurred because thermo occurred before kinetics. Changed thermo
	  to occur after kinetics.

2007-05-04 12:35  hkmoffa

	* Cantera/src/: base/.cvsignore, equil/.cvsignore,
	  kinetics/.cvsignore: Added .cvsignore files to new directories.

2007-05-04 12:27  hkmoffa

	* Cantera/src/numerics/: .cvsignore, CVode.cpp: Fixed a compilation
	  error. The include files were not found.

2007-05-04 08:52  dggoodwin

	* Cantera/cxx/include/Interface.h: minor cleanup

2007-05-04 08:48  dggoodwin

	* Cantera/cxx/include/Edge.h, Cantera/cxx/include/GRI30.h,
	  Cantera/cxx/include/IncompressibleSolid.h,
	  Cantera/cxx/include/Interface.h, Cantera/cxx/include/Metal.h,
	  Cantera/cxx/include/importPhase.h, Cantera/cxx/include/thermo.h,
	  Cantera/src/FILES, Cantera/src/ReactionStoichMgr.cpp,
	  Cantera/src/kinetics/ReactionStoichMgr.cpp,
	  test_problems/surfkin/Interface.h: minor cleanup

2007-05-04 08:27  dggoodwin

	* Cantera/src/: base/Makefile.in, equil/Makefile.in,
	  kinetics/Makefile.in, numerics/Makefile.in: added Makefiles

2007-05-04 08:18  dggoodwin

	* Makefile.in, configure, configure.in, preconfig,
	  Cantera/clib/src/Makefile.in, Cantera/clib/src/Storage.cpp,
	  Cantera/clib/src/Storage.h, Cantera/clib/src/ct.cpp,
	  Cantera/clib/src/ct.h, Cantera/clib/src/ctonedim.cpp,
	  Cantera/clib/src/ctonedim.h, Cantera/clib/src/ctreactor.cpp,
	  Cantera/clib/src/ctxml.cpp, Cantera/cxx/demos/Makefile.in,
	  Cantera/cxx/include/Cantera.h, Cantera/cxx/include/IdealGasMix.h,
	  Cantera/cxx/include/Interface.h, Cantera/cxx/include/PureFluid.h,
	  Cantera/cxx/include/kinetics.h, Cantera/cxx/include/onedim.h,
	  Cantera/cxx/include/thermo.h, Cantera/cxx/include/transport.h,
	  Cantera/cxx/include/zerodim.h, Cantera/cxx/src/Makefile.in,
	  Cantera/fortran/src/Makefile.in, Cantera/fortran/src/fct.cpp,
	  Cantera/fortran/src/fctxml.cpp, Cantera/fortran/src/flib_defs.h,
	  Cantera/matlab/cantera/private/mllogger.h,
	  Cantera/python/Makefile.in, Cantera/python/setup.py.in,
	  Cantera/python/src/pycantera.cpp, Cantera/python/src/pylogger.h,
	  Cantera/user/Makefile.in, test_problems/Makefile.in,
	  test_problems/ChemEquil_gri_matrix/Makefile.in,
	  test_problems/ChemEquil_gri_matrix/gri_matrix.cpp,
	  test_problems/ChemEquil_gri_pairs/Makefile.in,
	  test_problems/ChemEquil_ionizedGas/Makefile.in,
	  test_problems/ChemEquil_red1/Makefile.in,
	  test_problems/cathermo/DH_graph_1/DH_graph_1.cpp,
	  test_problems/cathermo/DH_graph_1/Makefile.in,
	  test_problems/cathermo/DH_graph_NM/DH_graph_1.cpp,
	  test_problems/cathermo/DH_graph_NM/Makefile.in,
	  test_problems/cathermo/DH_graph_Pitzer/DH_graph_1.cpp,
	  test_problems/cathermo/DH_graph_Pitzer/Makefile.in,
	  test_problems/cathermo/DH_graph_acommon/DH_graph_1.cpp,
	  test_problems/cathermo/DH_graph_acommon/Makefile.in,
	  test_problems/cathermo/DH_graph_bdotak/DH_graph_1.cpp,
	  test_problems/cathermo/DH_graph_bdotak/Makefile.in,
	  test_problems/cathermo/HMW_graph_CpvT/HMW_graph_CpvT.cpp,
	  test_problems/cathermo/HMW_graph_CpvT/Makefile.in,
	  test_problems/cathermo/HMW_graph_GvI/HMW_graph_GvI.cpp,
	  test_problems/cathermo/HMW_graph_GvI/Makefile.in,
	  test_problems/cathermo/HMW_graph_GvT/HMW_graph_GvT.cpp,
	  test_problems/cathermo/HMW_graph_GvT/Makefile.in,
	  test_problems/cathermo/HMW_graph_HvT/HMW_graph_HvT.cpp,
	  test_problems/cathermo/HMW_graph_HvT/Makefile.in,
	  test_problems/cathermo/HMW_graph_VvT/HMW_graph_VvT.cpp,
	  test_problems/cathermo/HMW_graph_VvT/Makefile.in,
	  test_problems/cathermo/HMW_test_1/HMW_test_1.cpp,
	  test_problems/cathermo/HMW_test_1/Makefile.in,
	  test_problems/cathermo/HMW_test_3/HMW_test_3.cpp,
	  test_problems/cathermo/HMW_test_3/Makefile.in,
	  test_problems/cathermo/ims/IMSTester.cpp,
	  test_problems/cathermo/ims/Makefile.in,
	  test_problems/cathermo/issp/ISSPTester.cpp,
	  test_problems/cathermo/issp/Makefile.in,
	  test_problems/cathermo/stoichSubSSTP/Makefile.in,
	  test_problems/cathermo/stoichSubSSTP/stoichSubSSTP.cpp,
	  test_problems/cathermo/testIAPWS/Makefile.in,
	  test_problems/cathermo/testIAPWSPres/Makefile.in,
	  test_problems/cathermo/testIAPWSTripP/Makefile.in,
	  test_problems/cathermo/testWaterPDSS/Makefile.in,
	  test_problems/cathermo/testWaterTP/Makefile.in,
	  test_problems/cathermo/testWaterTP/testWaterSSTP.cpp,
	  test_problems/diamondSurf/Makefile.in,
	  test_problems/diamondSurf/runDiamond.cpp,
	  test_problems/fracCoeff/Makefile.in,
	  test_problems/fracCoeff/fracCoeff.cpp,
	  test_problems/min_python/minDiamond/Makefile.in,
	  test_problems/min_python/minDiamond/runDiamond.cpp,
	  test_problems/min_python/negATest/Makefile.in,
	  test_problems/min_python/negATest/negATest.cpp,
	  test_problems/negATest/Makefile.in,
	  test_problems/negATest/negATest.cpp,
	  test_problems/pureFluidTest/Makefile.in,
	  test_problems/pureFluidTest/testPureWater.cpp,
	  test_problems/silane_equil/Makefile.in,
	  test_problems/surfkin/Makefile.in,
	  test_problems/surfkin/surfdemo.cpp, tools/src/Makefile.in,
	  tools/src/ck2cti.cpp: reorganized source tree, changed include
	  files, etc.

2007-05-04 08:15  dggoodwin

	* Cantera/src/: Array.h, XML_Writer.h, config.h, ct2ctml.cpp,
	  ct_defs.h, ctexceptions.h, ctml.cpp, ctml.h, global.h, logger.h,
	  misc.cpp, plots.cpp, plots.h, stringUtils.cpp, stringUtils.h,
	  units.h, utilities.h, vec_functions.h, xml.cpp, xml.h,
	  base/Array.h, base/XML_Writer.h, base/config.h, base/ct2ctml.cpp,
	  base/ct_defs.h, base/ctexceptions.h, base/ctml.cpp, base/ctml.h,
	  base/global.h, base/logger.h, base/misc.cpp, base/plots.cpp,
	  base/plots.h, base/stringUtils.cpp, base/stringUtils.h,
	  base/units.h, base/utilities.h, base/vec_functions.h,
	  base/xml.cpp, base/xml.h: moved base files

2007-05-04 07:41  dggoodwin

	* Cantera/src/: ArrayViewer.h, BandMatrix.cpp, BandMatrix.h,
	  BasisOptimize.cpp, CVode.cpp, CVode.h, CVodesIntegrator.cpp,
	  CVodesIntegrator.h, ChemEquil.cpp, ChemEquil.h, ConstCpPoly.cpp,
	  ConstCpPoly.h, ConstDensityThermo.cpp, ConstDensityThermo.h,
	  Constituents.cpp, Constituents.h, Crystal.h, DAE_Solver.h,
	  DAE_solvers.cpp, DASPK.cpp, DASPK.h, DenseMatrix.cpp,
	  DenseMatrix.h, EdgeKinetics.cpp, EdgeKinetics.h, EdgePhase.h,
	  Elements.cpp, Elements.h, Enhanced3BConc.h, FILES,
	  FalloffFactory.cpp, FalloffFactory.h, FalloffMgr.h, Func1.cpp,
	  Func1.h, FuncEval.h, GRI_30_Kinetics.cpp, GRI_30_Kinetics.h,
	  GasKinetics.cpp, GasKinetics.h, GasKineticsWriter.cpp,
	  GasKineticsWriter.h, GeneralSpeciesThermo.cpp,
	  GeneralSpeciesThermo.h, Group.cpp, Group.h, IDA_Solver.cpp,
	  IDA_Solver.h, IdealGasPhase.cpp, IdealGasPhase.h,
	  ImplicitChem.cpp, ImplicitChem.h, ImplicitSurfChem.cpp,
	  ImplicitSurfChem.h, IncompressibleThermo.h, Integrator.h,
	  InterfaceKinetics.cpp, InterfaceKinetics.h, Kinetics.cpp,
	  Kinetics.h, KineticsFactory.cpp, KineticsFactory.h,
	  LatticePhase.cpp, LatticePhase.h, LatticeSolidPhase.cpp,
	  LatticeSolidPhase.h, Makefile.in, MetalPhase.h, Mu0Poly.cpp,
	  Mu0Poly.h, MultiPhase.cpp, MultiPhase.h, MultiPhaseEquil.cpp,
	  MultiPhaseEquil.h, NasaPoly1.h, NasaPoly2.h, NasaThermo.h,
	  ODE_integrators.cpp, Phase.cpp, Phase.h, PropertyCalculator.h,
	  PureFluidPhase.cpp, PureFluidPhase.h, RateCoeffMgr.h,
	  ReactionData.h, ReactionPath.cpp, ReactionPath.h,
	  ReactionStoichMgr.h, ResidEval.h, RxnRates.h, ShomatePoly.h,
	  ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h,
	  SpeciesThermoFactory.cpp, SpeciesThermoFactory.h,
	  SpeciesThermoInterpType.h, SpeciesThermoMgr.h, State.cpp,
	  State.h, StoichManager.h, StoichSubstance.cpp, StoichSubstance.h,
	  SurfPhase.cpp, SurfPhase.h, ThermoFactory.cpp, ThermoFactory.h,
	  ThermoPhase.cpp, ThermoPhase.h, ThirdBodyMgr.h, ctlapack.h,
	  ctvector.cpp, ctvector.h, diagnostics.h, equil.h,
	  equilibrate.cpp, funcs.cpp, funcs.h, importCTML.cpp,
	  importCTML.h, lapack.h, mix_defs.h, phasereport.cpp, polyfit.h,
	  reaction_defs.h, sort.cpp, sort.h, speciesThermoTypes.h,
	  converters/Makefile.in, converters/ck2ct.cpp, oneD/Domain1D.h,
	  oneD/Inlet1D.h, oneD/Makefile.in, oneD/MultiJac.h,
	  oneD/MultiNewton.cpp, oneD/OneDim.cpp, oneD/Sim1D.h,
	  oneD/StFlow.cpp, oneD/StFlow.h, oneD/newton_utils.cpp,
	  transport/DustyGasTransport.cpp, transport/DustyGasTransport.h,
	  transport/L_matrix.h, transport/MMCollisionInt.cpp,
	  transport/MMCollisionInt.h, transport/Makefile.in,
	  transport/MixTransport.cpp, transport/MixTransport.h,
	  transport/MultiTransport.cpp, transport/MultiTransport.h,
	  transport/SolidTransport.cpp, transport/SolidTransport.h,
	  transport/TransportBase.h, transport/TransportFactory.cpp,
	  transport/TransportFactory.h, transport/TransportParams.h,
	  zeroD/ConstPressureReactor.cpp, zeroD/FlowDevice.cpp,
	  zeroD/FlowDevice.h, zeroD/Makefile.in, zeroD/Reactor.cpp,
	  zeroD/Reactor.h, zeroD/ReactorBase.h, zeroD/ReactorNet.cpp,
	  zeroD/ReactorNet.h, zeroD/Wall.cpp, zeroD/Wall.h,
	  zeroD/flowControllers.h: removed files that were added in
	  subdirectories

2007-05-04 07:40  dggoodwin

	* Cantera/src/numerics/: ArrayViewer.h, BandMatrix.cpp,
	  BandMatrix.h, CVode.cpp, CVode.h, CVodesIntegrator.cpp,
	  CVodesIntegrator.h, DAE_Solver.h, DAE_solvers.cpp, DASPK.cpp,
	  DASPK.h, DenseMatrix.cpp, DenseMatrix.h, Func1.cpp, Func1.h,
	  FuncEval.h, IDA_Solver.cpp, IDA_Solver.h, Integrator.h,
	  ODE_integrators.cpp, ResidEval.h, ctlapack.h, funcs.cpp, funcs.h,
	  lapack.h, polyfit.h, sort.cpp, sort.h: oved files to numerics
	  subdirectory

2007-05-04 07:27  dggoodwin

	* Cantera/src/kinetics/: EdgeKinetics.cpp, EdgeKinetics.h,
	  Enhanced3BConc.h, FalloffFactory.cpp, FalloffFactory.h,
	  FalloffMgr.h, GRI_30_Kinetics.cpp, GRI_30_Kinetics.h,
	  GasKinetics.cpp, GasKinetics.h, GasKineticsWriter.cpp,
	  GasKineticsWriter.h, Group.cpp, Group.h, ImplicitChem.cpp,
	  ImplicitChem.h, ImplicitSurfChem.cpp, ImplicitSurfChem.h,
	  InterfaceKinetics.cpp, InterfaceKinetics.h, Kinetics.cpp,
	  Kinetics.h, KineticsFactory.cpp, KineticsFactory.h,
	  RateCoeffMgr.h, ReactionData.h, ReactionPath.cpp, ReactionPath.h,
	  ReactionStoichMgr.h, RxnRates.h, StoichManager.h, ThirdBodyMgr.h,
	  importKinetics.cpp, importKinetics.h, reaction_defs.h: moved
	  files to kinetics subdirectory

2007-05-04 07:12  dggoodwin

	* Cantera/src/equil/: BasisOptimize.cpp, ChemEquil.cpp,
	  ChemEquil.h, MultiPhase.cpp, MultiPhase.h, MultiPhaseEquil.cpp,
	  MultiPhaseEquil.h, PropertyCalculator.h, equil.h,
	  equilibrate.cpp: moved files to equil subdirectory

2007-05-04 07:02  dggoodwin

	* Cantera/src/thermo/: ConstCpPoly.cpp, ConstCpPoly.h,
	  ConstDensityThermo.cpp, ConstDensityThermo.h, Constituents.cpp,
	  Constituents.h, Crystal.h, DebyeHuckel.cpp, EdgePhase.h,
	  Elements.cpp, Elements.h, GeneralSpeciesThermo.cpp,
	  GeneralSpeciesThermo.h, HMWSoln.cpp, HMWSoln_input.cpp,
	  IdealGasPDSS.cpp, IdealGasPhase.cpp, IdealGasPhase.h,
	  IdealMolalSoln.cpp, IdealSolidSolnPhase.h, LatticePhase.cpp,
	  LatticePhase.h, LatticeSolidPhase.cpp, LatticeSolidPhase.h,
	  Makefile.in, MetalPhase.h, Mu0Poly.cpp, Mu0Poly.h, NasaPoly1.h,
	  NasaPoly2.h, NasaThermo.h, PDSS.cpp, Phase.cpp, Phase.h,
	  PureFluidPhase.cpp, PureFluidPhase.h, ShomatePoly.h,
	  ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h,
	  SpeciesThermoFactory.cpp, SpeciesThermoFactory.h,
	  SpeciesThermoInterpType.h, SpeciesThermoMgr.h, State.cpp,
	  State.h, StoichSubstance.cpp, StoichSubstance.h,
	  StoichSubstanceSSTP.cpp, SurfPhase.cpp, SurfPhase.h,
	  ThermoFactory.cpp, ThermoFactory.h, ThermoPhase.cpp,
	  ThermoPhase.h, WaterPDSS.cpp, WaterSSTP.cpp, mix_defs.h,
	  phasereport.cpp, speciesThermoTypes.h: moved files to thermo
	  subdirectory

2007-04-30 11:15  dggoodwin

	* Cantera/src/: Func1.cpp, Func1.h: more on functors

2007-04-26 16:00  dggoodwin

	* Cantera/: clib/src/ctfunc.cpp, clib/src/ctfunc.h,
	  python/Cantera/Func.py, python/src/ctfunc_methods.cpp,
	  python/src/methods.h, src/Func1.cpp, src/Func1.h: improved
	  functors

2007-04-25 13:41  dggoodwin

	* Cantera/: clib/src/ctonedim.cpp, clib/src/ctonedim.h,
	  python/Cantera/OneD/onedim.py, python/examples/flames/flame2.py,
	  python/src/ctonedim_methods.cpp, python/src/methods.h,
	  src/ThermoFactory.cpp, src/oneD/StFlow.cpp, src/oneD/StFlow.h:
	  added ability to enable Soret effect in flame calculations

2007-04-24 17:08  dggoodwin

	* ext/math/: daux.f, dpolft.f, j4save.f, polfit.f, pvalue.f,
	  xerprn.f: ;

2007-04-24 17:06  dggoodwin

	* Cantera/src/oneD/Domain1D.h: added cPorousType

2007-04-24 17:05  dggoodwin

	* Cantera/src/SpeciesThermoMgr.h: added doc

2007-04-24 17:03  dggoodwin

	* Cantera/src/CVodesIntegrator.h: fail if no sundials

2007-04-24 17:03  dggoodwin

	* Cantera/src/CVodesIntegrator.cpp: include config.h

2007-04-17 14:10  hkmoffa

	* Cantera/src/thermo/Makefile.in, ext/f2c_libs/arith.h,
	  test_problems/Makefile.in: Fixed an error in the test suite.
	  Changed some files around in caThermo so that requesting the
	  ideal solution option but not the electrochemistry option will
	  now pass the test suite.

2007-04-13 15:39  hkmoffa

	* configure, configure.in, preconfig, Cantera/clib/src/Makefile.in,
	  Cantera/cxx/demos/Makefile.in, Cantera/cxx/src/Makefile.in,
	  Cantera/src/Makefile.in, Cantera/src/converters/Makefile.in,
	  Cantera/src/oneD/Makefile.in, Cantera/src/thermo/Makefile.in,
	  Cantera/src/transport/Makefile.in, Cantera/src/zeroD/Makefile.in,
	  Cantera/user/Makefile.in, ext/blas/Makefile.in,
	  ext/cvode/Makefile.in, ext/f2c_blas/Makefile.in,
	  ext/f2c_lapack/Makefile.in, ext/f2c_libs/Makefile.in,
	  ext/f2c_libs/arith.h, ext/f2c_math/Makefile.in,
	  ext/f2c_recipes/Makefile.in, ext/lapack/Makefile.in,
	  ext/math/Makefile.in, ext/recipes/Makefile.in,
	  ext/tpx/Makefile.in,
	  test_problems/ChemEquil_ionizedGas/output_blessed.txt: Added in
	  the PIC autoconf variable, that already existed, into most of the
	  Makefiles in the code. This variable will now be used to specify
	  the position independent code compiler option within Cantera.
	  Note, this bug fix was needed for a 64 bit full python compile on
	  linux.

2007-04-13 09:47  hkmoffa

	* test_problems/cxx_ex/kin2_blessed.csv: Rebaselined this file.
	  The title line was wrong, and csvdiff is now comparing title
	  lines.

2007-04-10 16:06  hkmoffa

	* Cantera/python/: Makefile.in, setup.py.in: Reworked a few issues
	  in the python build script so that compilation and link errors
	  would be more self-evident.	 Now, link errors in the
	  _cantera.so build will register with	the python layer, because a
	  python exception is raised. This will propagate into the Makefile
	  causing make to prematurely stop the build process, because one
	  of its commands has come back with a non-zero exit status. This
	  causes the "make all" command to return a non-zero exit status,
	  so that the entire make command comes to a halt, which is the
	  desired behavior.

2007-04-10 15:19  hkmoffa

	* Cantera/clib/src/: ct.cpp, ctreactor.cpp: Fix for solaris.
	  Previous attempted bug fix actually didn't compile on solaris.
	  The solution to get it to work on both linux and solaris was to
	  add a declaration (not a definition) to the alternate file.

2007-04-10 15:04  hkmoffa

	* Cantera/clib/src/: ct.cpp, ctfunc.cpp, ctreactor.cpp, ctxml.cpp:
	  Fixed linking error in python module that was caused by duplicate
	  static member storage statements on linux.

2007-04-01 15:00  hkmoffa

	* tools/testtools/csvdiff.cpp: Changed csvdiff so that it would
	  care about the header information, and fail a test the headers
	  are different.  Note, I am using this information to put the
	  iteration count.

2007-03-30 16:20  hkmoffa

	* Cantera/src/BasisOptimize.cpp, Cantera/src/MultiPhase.cpp,
	  Cantera/src/MultiPhase.h, tools/doc/Cantera.cfg.in: doxygen
	  update    Finished eliminating the doxygen warnings from
	  MultiPhase

2007-03-29 16:54  hkmoffa

	* Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhase.h,
	  Cantera/src/ctexceptions.h,
	  test_problems/diamondSurf/runDiamond.cpp: doxygen update    More
	  work on MultiPhase. Fixed some errors in elementAbundance calc
	  too.	Added the definitions	 AssertTrace(), AssertThrow(),	and
	  AssertThrowMsg() for a  debug assertion    capability. Added them
	  to a test problem to make sure that	 they actually compile.

2007-03-29 10:22  hkmoffa

	* Cantera/src/MultiPhase.cpp: Fixed an error in the element
	  abundance calculation.

2007-03-28 13:33  hkmoffa

	* Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhase.h,
	  tools/doc/Cantera.cfg.in: Added an element abundance return
	  capability.  doxygen update	Started documenting MultiPhase

2007-03-26 14:53  hkmoffa

	* tools/testtools/: csvdiff.cpp, mdp_allo.cpp, mdp_allo.h: csvdiff
	  update:    Some data columns may now be strings. A string
	  comparison is then done.

2007-03-23 20:12  hkmoffa

	* Cantera/src/Elements.h, Cantera/src/Phase.h, Cantera/src/State.h,
	  tools/doc/doxyinput/Cantera.txt: doxygen update    Worked on the
	  Phases of Matter module

2007-03-23 08:09  hkmoffa

	* Cantera/cxx/include/equilibrium.h,
	  Cantera/src/GeneralSpeciesThermo.cpp,
	  Cantera/src/GeneralSpeciesThermo.h,
	  Cantera/src/IdealGasPhase.cpp, Cantera/src/IdealGasPhase.h,
	  Cantera/src/Kinetics.cpp, Cantera/src/Kinetics.h,
	  Cantera/src/Mu0Poly.cpp, Cantera/src/Mu0Poly.h,
	  Cantera/src/NasaPoly1.h, Cantera/src/NasaPoly2.h,
	  Cantera/src/NasaThermo.h, Cantera/src/Phase.cpp,
	  Cantera/src/Phase.h, Cantera/src/PureFluidPhase.cpp,
	  Cantera/src/PureFluidPhase.h, Cantera/src/ShomatePoly.h,
	  Cantera/src/ShomateThermo.h, Cantera/src/SimpleThermo.h,
	  Cantera/src/SpeciesThermo.h,
	  Cantera/src/SpeciesThermoFactory.cpp,
	  Cantera/src/SpeciesThermoFactory.h,
	  Cantera/src/SpeciesThermoMgr.h, Cantera/src/State.cpp,
	  Cantera/src/State.h, Cantera/src/SurfPhase.cpp,
	  Cantera/src/SurfPhase.h, Cantera/src/ThermoFactory.cpp,
	  Cantera/src/ThermoFactory.h, Cantera/src/ThermoPhase.cpp,
	  Cantera/src/ThermoPhase.h, Cantera/src/global.h,
	  Cantera/src/logger.h, Cantera/src/misc.cpp, Cantera/src/units.h,
	  Cantera/src/utilities.h, Cantera/src/thermo/DebyeHuckel.cpp,
	  Cantera/src/thermo/DebyeHuckel.h,
	  Cantera/src/thermo/IdealMolalSoln.cpp,
	  Cantera/src/thermo/IdealMolalSoln.h,
	  Cantera/src/thermo/IdealSolidSolnPhase.cpp,
	  Cantera/src/thermo/IdealSolidSolnPhase.h,
	  Cantera/src/thermo/MolalityVPSSTP.cpp,
	  Cantera/src/thermo/MolalityVPSSTP.h,
	  Cantera/src/thermo/SingleSpeciesTP.cpp,
	  Cantera/src/thermo/SingleSpeciesTP.h,
	  Cantera/src/thermo/StoichSubstanceSSTP.cpp,
	  Cantera/src/thermo/StoichSubstanceSSTP.h,
	  Cantera/src/thermo/VPStandardStateTP.cpp,
	  Cantera/src/thermo/VPStandardStateTP.h,
	  Cantera/src/thermo/WaterPropsIAPWS.cpp,
	  Cantera/src/thermo/WaterPropsIAPWS.h,
	  Cantera/src/thermo/WaterPropsIAPWSphi.cpp,
	  Cantera/src/thermo/WaterPropsIAPWSphi.h,
	  Cantera/src/thermo/WaterSSTP.cpp, Cantera/src/thermo/WaterSSTP.h,
	  data/inputs/.cvsignore, tools/bin/.cvsignore: Doxygen update
	  Finished a draft of the File Tab within Doxygen. Each file now
	  has a link to the relevant modules and classes.

2007-03-21 13:58  hkmoffa

	* Cantera/src/: ConstCpPoly.cpp, ConstCpPoly.h,
	  ConstDensityThermo.cpp, ConstDensityThermo.h, Constituents.cpp,
	  Constituents.h, EdgePhase.h, Elements.cpp, Elements.h,
	  Kinetics.cpp, Kinetics.h, SpeciesThermoInterpType.h, ct_defs.h,
	  ctexceptions.h, importCTML.cpp, importCTML.h,
	  speciesThermoTypes.h, thermo/DebyeHuckel.cpp,
	  thermo/DebyeHuckel.h: Doxygen update	-- Worked on the file TAB
	  descriptions DebyeHuckel    -- made a bunch of functions public
	  again. They were mistakenly	    protected.

2007-03-20 17:44  hkmoffa

	* Cantera/src/converters/ck2ct.cpp: Solaris 10 port - 64 bit
	  changed getline(s, rest) form to getline(s, rest, '\n').   This
	  is probably an internal solaris stl bug.

2007-03-20 15:42  hkmoffa

	* Cantera/: clib/src/ct.cpp, clib/src/ctreactor.cpp,
	  fortran/src/fct.cpp, fortran/src/fctxml.cpp: Solaris 10 update
	  Forgot the template specialization on the static storage
	  declaration.	  Thus, previous commit wouldn't compile on linux.
	  This fixes the    problem.

2007-03-20 15:01  hkmoffa

	* test_problems/: cathermo/HMW_graph_GvT/Gex_standalone.cpp,
	  cathermo/issp/runtest, pureFluidTest/runtest: solaris 10 updates
	  fixed a compilation error.

2007-03-20 15:00  hkmoffa

	* ext/: cvode/Makefile.in, f2c_blas/Makefile.in,
	  f2c_lapack/Makefile.in, f2c_libs/Makefile.in,
	  f2c_math/Makefile.in: Solaris 10 Updates:    Changed CXX_FLAGS to
	  CFLAGS in a bunch of ext directories.

2007-03-20 14:58  hkmoffa

	* Cantera/: clib/src/ct.cpp, clib/src/ctreactor.cpp,
	  fortran/src/fct.cpp, fortran/src/fctxml.cpp: Solaris 10 updates
	  Added declarations of static member storage for templated
	  classes.

2007-03-20 14:57  hkmoffa

	* Cantera/src/: ConstCpPoly.cpp, ConstDensityThermo.cpp, Group.cpp,
	  LatticePhase.cpp, stringUtils.cpp: Solaris 10 update	  Added
	  various c include files.

2007-03-20 14:56  hkmoffa

	* Cantera/src/Phase.cpp: Solaris 10 update    Calling
	  setState_TRY() in freezeSpecies() caused one of the test problems
	  on solaris to fail. FreezeSpecies is called before the phase is
	  actually set up (i.e., the size of the species is read from the
	  input file).	For constant density phases, then, this was causing
	  a problem (divide by zero).  setState() must be called after the
	  phase is set up from the XML input file.

2007-03-20 14:53  hkmoffa

	* Cantera/src/Makefile.in: Solaris 10	 Added CXX_FLAGS to the
	  CXX_DEPENDS rule.

2007-03-20 14:52  hkmoffa

	* Cantera/src/ChemEquil.cpp: Solaris 10 update	  Made sure
	  m_nComponents is never assumed to be larger than m_kk, even
	  before it is actually calculated.

2007-03-20 14:51  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.cpp, HMWSoln.cpp,
	  HMWSoln_input.cpp, WaterPDSS.cpp, WaterProps.cpp: Solaris 10
	  update    Various std:: additions to stl functions and additions
	  of c include files.

2007-03-20 14:49  hkmoffa

	* Cantera/src/thermo/IdealMolalSoln.cpp: Solaris 10 updaet    Put a
	  std:: on copy.

2007-03-20 14:48  hkmoffa

	* Cantera/src/thermo/PDSS.cpp: Solaris 10 update   no need for a
	  local m_temp variable.

2007-03-20 14:47  hkmoffa

	* Cantera/src/thermo/MolalityVPSSTP.cpp: solaris10 update    no
	  need for a separate m_kk local variable.

2007-03-20 14:46  hkmoffa

	* Cantera/src/thermo/SingleSpeciesTP.h: solaris 10 update   Changed
	  getActivities() to be a const function.

2007-03-20 14:45  hkmoffa

	* Cantera/src/: ThermoPhase.cpp, ThermoPhase.h: solaris10 update
	  Changed getActivities to be a const function, as per the
	  convention of the other functions    in ThermoPhase.

2007-03-20 14:44  hkmoffa

	* Cantera/src/thermo/: WaterSSTP.cpp, WaterSSTP.h: solaris10 update
	  Changed satPressure() to be a const function, as it should be

2007-03-20 14:43  hkmoffa

	* Cantera/src/thermo/: IdealSolidSolnPhase.cpp,
	  IdealSolidSolnPhase.h: Solaris10 updates    Changed some
	  definitions to conform to const/nonconst conventions.

2007-03-20 14:28  hkmoffa

	* configure, configure.in: Added a missing test directory

2007-03-20 14:27  hkmoffa

	* tools/testtools/Makefile.in: solaris10 change   Changed a @CXX@
	  to a @CXX_DEPENDS@

2007-03-20 14:26  hkmoffa

	* tools/src/Makefile.in: solaris10 change:   changed a CXX to a
	  CXX_DEPENDS

2007-03-16 10:22  hkmoffa

	* Cantera/src/IdealGasPhase.h, Cantera/src/ThermoPhase.h,
	  Cantera/src/thermo/DebyeHuckel.h,
	  Cantera/src/thermo/WaterPropsIAPWS.cpp,
	  Cantera/src/thermo/WaterPropsIAPWS.h,
	  Cantera/src/thermo/WaterPropsIAPWSphi.h,
	  Cantera/src/thermo/WaterSSTP.cpp, Cantera/src/thermo/WaterSSTP.h,
	  test_problems/cathermo/testWaterTP/output_blessed.txt,
	  test_problems/cathermo/testWaterTP/testWaterSSTP.cpp,
	  test_problems/cathermo/testWaterTP/waterTPphase.xml: WaterSSTP
	  update   Worked on doxygen documentation   Changed the XML
	  definition   Worked on making it fall in line with other
	  ThermoPhase objects.

2007-03-15 16:09  hkmoffa

	* Cantera/src/thermo/WaterSSTP.cpp, Cantera/src/thermo/WaterSSTP.h,
	  tools/doc/Cantera.cfg.in: doxygen update    Changed the name of
	  WaterTP to WaterSSTP in a few places.

2007-03-15 15:56  hkmoffa

	* Cantera/src/ThermoPhase.h,
	  Cantera/src/thermo/IdealSolidSolnPhase.cpp,
	  Cantera/src/thermo/IdealSolidSolnPhase.h,
	  Cantera/src/thermo/Makefile.in,
	  Cantera/src/thermo/SingleSpeciesTP.cpp,
	  Cantera/src/thermo/SingleSpeciesTP.h,
	  Cantera/src/thermo/WaterPropsIAPWS.cpp,
	  Cantera/src/thermo/WaterPropsIAPWS.h,
	  Cantera/src/thermo/WaterPropsIAPWSphi.cpp,
	  Cantera/src/thermo/WaterPropsIAPWSphi.h,
	  Cantera/src/thermo/WaterSSTP.cpp, Cantera/src/thermo/WaterSSTP.h,
	  Cantera/src/thermo/WaterTP.cpp, Cantera/src/thermo/WaterTP.h,
	  ext/f2c_libs/arith.h,
	  test_problems/cathermo/testIAPWSPres/output_blessed.txt,
	  test_problems/cathermo/testIAPWSPres/runtest,
	  test_problems/cathermo/testWaterTP/.cvsignore,
	  test_problems/cathermo/testWaterTP/Makefile.in,
	  test_problems/cathermo/testWaterTP/output_blessed.txt,
	  test_problems/cathermo/testWaterTP/runtest,
	  test_problems/cathermo/testWaterTP/testWaterSSTP.cpp,
	  test_problems/cathermo/testWaterTP/testWaterTP.cpp: Changed the
	  WaterTP class to WaterSSTP, which now inherits from
	  SingleSpeciesTP, as it should Fixed an error in pressure
	  calculation within  WaterSSTP.  Added more function calls to the
	  test problem for WaterSSTP.

2007-03-14 08:17  hkmoffa

	* configure, configure.in, Cantera/src/IdealGasPhase.h,
	  Cantera/src/SurfPhase.h, Cantera/src/thermo/WaterTP.cpp,
	  Cantera/src/thermo/WaterTP.h, test_problems/Makefile.in,
	  test_problems/cathermo/testWaterTP/output_blessed.txt,
	  test_problems/cathermo/testWaterTP/testWaterTP.cpp,
	  test_problems/pureFluidTest/.cvsignore,
	  test_problems/pureFluidTest/Makefile.in,
	  test_problems/pureFluidTest/liquidvapor.xml,
	  test_problems/pureFluidTest/output_blessed.txt,
	  test_problems/pureFluidTest/runtest,
	  test_problems/pureFluidTest/testPureWater.cpp: Test Suite Update
	  -> Added a pureFluidTest problem that only gets carried out if
	  the WIT_PURE_FLUIDS conditional compile takes place.    ->
	  added more to testWaterTP, so that it queries the unstable
	  water region up to the spinodal curve.

2007-03-13 08:55  hkmoffa

	* Cantera/src/: IdealGasPhase.h, SurfPhase.h, equil.h,
	  equilibrate.cpp: Doxygen update   Finished documenting
	  IdealGasPhase   Started documenting equilibrium solvers

2007-03-12 17:58  hkmoffa

	* Cantera/src/IdealGasPhase.cpp, Cantera/src/IdealGasPhase.h,
	  Cantera/src/SpeciesThermo.h, Cantera/src/ThermoPhase.h,
	  Cantera/src/equil.h, tools/doc/Cantera.cfg.in: doxygen update
	  Started writing header info for IdealGasPhase

2007-03-12 08:16  hkmoffa

	* Cantera/src/PureFluidPhase.h, Cantera/src/SpeciesThermo.h,
	  Cantera/src/SurfPhase.h, Cantera/src/ThermoPhase.h,
	  Cantera/src/thermo/WaterTP.cpp, Cantera/src/thermo/WaterTP.h,
	  tools/doc/Cantera.cfg.in, tools/doc/doxyinput/thermo.txt: doxygen
	  update   Added PureFluidPhase and WaterTP

2007-03-11 18:12  hkmoffa

	* Cantera/src/ConstDensityThermo.h, Cantera/src/Kinetics.cpp,
	  Cantera/src/Kinetics.h, Cantera/src/NasaThermo.h,
	  Cantera/src/Phase.h, Cantera/src/ThermoPhase.h,
	  Cantera/src/units.h, Cantera/src/thermo/DebyeHuckel.cpp,
	  Cantera/src/thermo/DebyeHuckel.h,
	  Cantera/src/thermo/SingleSpeciesTP.h,
	  Cantera/src/thermo/VPStandardStateTP.h,
	  Cantera/src/thermo/WaterPropsIAPWS.cpp,
	  Cantera/src/thermo/WaterPropsIAPWS.h,
	  Cantera/src/thermo/WaterPropsIAPWSphi.cpp,
	  Cantera/src/thermo/WaterPropsIAPWSphi.h,
	  tools/doc/Cantera.cfg.in: Fixed some errors in DebyeHuckel that
	  weren't covered by test suite   (partial molar enthalpy and heat
	  capacity) Doxygen update   - added private functions and added
	  some water property files.

2007-03-11 12:46  hkmoffa

	* Cantera/src/ConstDensityThermo.h, Cantera/src/ThermoPhase.h,
	  Cantera/src/thermo/DebyeHuckel.cpp,
	  Cantera/src/thermo/DebyeHuckel.h,
	  Cantera/src/thermo/IdealMolalSoln.h, examples/cxx/Makefile.in,
	  test_problems/ChemEquil_gri_matrix/Makefile.in,
	  test_problems/ChemEquil_gri_pairs/Makefile.in,
	  test_problems/ChemEquil_ionizedGas/Makefile.in,
	  test_problems/ChemEquil_red1/Makefile.in,
	  test_problems/cathermo/DH_graph_1/Makefile.in,
	  test_problems/cathermo/DH_graph_NM/Makefile.in,
	  test_problems/cathermo/DH_graph_Pitzer/Makefile.in,
	  test_problems/cathermo/DH_graph_acommon/Makefile.in,
	  test_problems/cathermo/DH_graph_bdotak/Makefile.in,
	  test_problems/cathermo/HMW_graph_CpvT/Makefile.in,
	  test_problems/cathermo/HMW_graph_GvI/Makefile.in,
	  test_problems/cathermo/HMW_graph_GvT/Makefile.in,
	  test_problems/cathermo/HMW_graph_HvT/Makefile.in,
	  test_problems/cathermo/HMW_graph_VvT/Makefile.in,
	  test_problems/cathermo/HMW_test_1/Makefile.in,
	  test_problems/cathermo/HMW_test_3/Makefile.in,
	  test_problems/cathermo/ims/Makefile.in,
	  test_problems/cathermo/issp/Makefile.in,
	  test_problems/cathermo/stoichSubSSTP/Makefile.in,
	  test_problems/cathermo/testIAPWS/Makefile.in,
	  test_problems/cathermo/testIAPWSPres/Makefile.in,
	  test_problems/cathermo/testIAPWSTripP/Makefile.in,
	  test_problems/cathermo/testWaterPDSS/Makefile.in,
	  test_problems/cathermo/testWaterTP/Makefile.in,
	  test_problems/diamondSurf/Makefile.in,
	  test_problems/fracCoeff/Makefile.in,
	  test_problems/negATest/Makefile.in,
	  test_problems/silane_equil/Makefile.in,
	  test_problems/surfkin/Makefile.in, tools/doc/Cantera.cfg.in:
	  Doxygen update:    Added info to DebyeHuckel. It's getting to be
	  near a documented state.  test suite fix:    fixed Makefile.in's.
	  The .depends were not being included in the Makefiles.     It
	  should now be more stable.

2007-03-09 13:04  hkmoffa

	* configure, configure.in, Cantera/src/Makefile.in,
	  Cantera/src/thermo/DebyeHuckel.cpp,
	  Cantera/src/thermo/DebyeHuckel.h, Cantera/src/thermo/HMWSoln.cpp,
	  Cantera/src/thermo/HMWSoln.h,
	  Cantera/src/thermo/IdealMolalSoln.cpp,
	  Cantera/src/thermo/IdealMolalSoln.h,
	  Cantera/src/thermo/Makefile.in,
	  Cantera/src/thermo/VPStandardStateTP.h,
	  test_problems/cathermo/Makefile.in,
	  test_problems/cathermo/DH_graph_1/.cvsignore,
	  test_problems/cathermo/DH_graph_1/DH_NaCl.xml,
	  test_problems/cathermo/DH_graph_1/DH_NaCl_NM.xml,
	  test_problems/cathermo/DH_graph_1/DH_NaCl_NM_blessed.csv,
	  test_problems/cathermo/DH_graph_1/DH_NaCl_Pitzer.xml,
	  test_problems/cathermo/DH_graph_1/DH_NaCl_Pitzer_blessed.csv,
	  test_problems/cathermo/DH_graph_1/DH_NaCl_acommon.xml,
	  test_problems/cathermo/DH_graph_1/DH_NaCl_acommon_blessed.csv,
	  test_problems/cathermo/DH_graph_1/DH_NaCl_bdotak.xml,
	  test_problems/cathermo/DH_graph_1/DH_NaCl_bdotak_blessed.csv,
	  test_problems/cathermo/DH_graph_1/DH_NaCl_blessed.csv,
	  test_problems/cathermo/DH_graph_1/runtest,
	  test_problems/cathermo/DH_graph_NM/.cvsignore,
	  test_problems/cathermo/DH_graph_NM/DH_NaCl_NM.xml,
	  test_problems/cathermo/DH_graph_NM/DH_NaCl_NM_blessed.csv,
	  test_problems/cathermo/DH_graph_NM/DH_graph_1.cpp,
	  test_problems/cathermo/DH_graph_NM/Makefile.in,
	  test_problems/cathermo/DH_graph_NM/runtest,
	  test_problems/cathermo/DH_graph_Pitzer/.cvsignore,
	  test_problems/cathermo/DH_graph_Pitzer/DH_NaCl_Pitzer.xml,
	  test_problems/cathermo/DH_graph_Pitzer/DH_NaCl_Pitzer_blessed.csv,
	  test_problems/cathermo/DH_graph_Pitzer/DH_graph_1.cpp,
	  test_problems/cathermo/DH_graph_Pitzer/Makefile.in,
	  test_problems/cathermo/DH_graph_Pitzer/runtest,
	  test_problems/cathermo/DH_graph_acommon/.cvsignore,
	  test_problems/cathermo/DH_graph_acommon/DH_NaCl_acommon.xml,
	  test_problems/cathermo/DH_graph_acommon/DH_NaCl_acommon_blessed.csv,
	  test_problems/cathermo/DH_graph_acommon/DH_graph_1.cpp,
	  test_problems/cathermo/DH_graph_acommon/Makefile.in,
	  test_problems/cathermo/DH_graph_acommon/runtest,
	  test_problems/cathermo/DH_graph_bdotak/.cvsignore,
	  test_problems/cathermo/DH_graph_bdotak/DH_NaCl_bdotak.xml,
	  test_problems/cathermo/DH_graph_bdotak/DH_NaCl_bdotak_blessed.csv,
	  test_problems/cathermo/DH_graph_bdotak/DH_graph_1.cpp,
	  test_problems/cathermo/DH_graph_bdotak/Makefile.in,
	  test_problems/cathermo/DH_graph_bdotak/runtest,
	  test_problems/cathermo/HMW_graph_GvI/runtest,
	  test_problems/cathermo/HMW_test_1/HMW_test_1.cpp,
	  test_problems/cathermo/HMW_test_1/Makefile.in,
	  test_problems/cathermo/HMW_test_1/runtest,
	  test_problems/cathermo/HMW_test_3/.cvsignore,
	  test_problems/cathermo/HMW_test_3/HMW_test_3.cpp,
	  test_problems/cathermo/HMW_test_3/output_noD_blessed.txt,
	  test_problems/cathermo/HMW_test_3/runtest,
	  test_problems/cathermo/ims/output_blessed.txt: Worked on
	  VPStandardStateTP some more Fixed an error in IdealMolalSoln ->
	  density wasn't beeing recalculated.	     Updated the test
	  problem with the fix.  Worked CANTERA_DEBUG_MODE into the
	  Makefiles. It wasn't being used.  Split the multiproblem
	  DH_graph_1 test into multiple directories, one per test Worked on
	  getting all of the test problems to have the same look, feel, and
	  printout.

2007-03-08 10:23  hkmoffa

	* Cantera/src/thermo/DebyeHuckel.cpp,
	  Cantera/src/thermo/DebyeHuckel.h, Cantera/src/thermo/HMWSoln.cpp,
	  Cantera/src/thermo/HMWSoln.h,
	  Cantera/src/thermo/IdealMolalSoln.cpp,
	  Cantera/src/thermo/IdealMolalSoln.h,
	  Cantera/src/thermo/SingleSpeciesTP.h,
	  Cantera/src/thermo/VPStandardStateTP.cpp,
	  Cantera/src/thermo/VPStandardStateTP.h,
	  test_problems/cathermo/DH_graph_1/runtest: Work on
	  VPStandardStateTP. Started to formalize what it actually does,
	  putting in doxygen documentation. Tried to fix some holes in
	  DebyeHuckel wherein calculations may be returned without updating
	  the underlying water standard state.

2007-03-06 09:14  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h: Doxygen
	  update    - Worked on the equation section.

2007-03-05 13:02  hkmoffa

	* Cantera/src/: State.h, thermo/DebyeHuckel.cpp,
	  thermo/DebyeHuckel.h: Doxygen update	 Filled in some more holes
	  into DebyeHuckel.h   Eliminated the warning messages. Still more
	  work to be done.

2007-03-05 08:36  hkmoffa

	* Cantera/src/: ThermoPhase.h, thermo/DebyeHuckel.cpp,
	  thermo/DebyeHuckel.h, thermo/HMWSoln.h, thermo/IdealMolalSoln.h,
	  thermo/VPStandardStateTP.h: Doxygen update   Added more equations
	  in DebyeHuckel.

2007-03-04 17:01  hkmoffa

	* Cantera/src/: IdealGasPhase.cpp, IdealGasPhase.h, ThermoPhase.h,
	  thermo/DebyeHuckel.cpp, thermo/DebyeHuckel.h, thermo/HMWSoln.h,
	  thermo/MolalityVPSSTP.cpp, thermo/MolalityVPSSTP.h: Doxygen
	  update -    Added DebyeHuckel to doxygen.  There are still
	  unfilled entries    Started filling in how the Molality
	  formulation is carried out.

2007-02-28 14:17  hkmoffa

	* Cantera/src/ThermoPhase.h, Cantera/src/thermo/DebyeHuckel.cpp,
	  Cantera/src/thermo/DebyeHuckel.h,
	  Cantera/src/thermo/StoichSubstanceSSTP.h,
	  tools/doc/Cantera.cfg.in: Added getStandardVolumes_ref() to
	  ThermoPhase.h    I had started to put similar routines in in
	  child routines, but it deserves to be here to fill out the suite.
	  Added DebyeHuckel to doxygen - unfinished.    took out
	  getSpeciesMolarVolume() from DebyeHuckel.

2007-02-27 19:00  hkmoffa

	* Cantera/src/NasaPoly1.h, Cantera/src/StoichSubstance.h,
	  Cantera/src/SurfPhase.h, Cantera/src/ThermoPhase.h,
	  Cantera/src/importCTML.cpp, Cantera/src/importCTML.h,
	  Cantera/src/thermo/StoichSubstanceSSTP.cpp,
	  Cantera/src/thermo/StoichSubstanceSSTP.h,
	  test_problems/cathermo/Makefile.in,
	  test_problems/cathermo/stoichSubSSTP/.cvsignore,
	  test_problems/cathermo/stoichSubSSTP/Makefile.in,
	  test_problems/cathermo/stoichSubSSTP/NaCl_Solid.xml,
	  test_problems/cathermo/stoichSubSSTP/TemperatureTable.h,
	  test_problems/cathermo/stoichSubSSTP/output_blessed.txt,
	  test_problems/cathermo/stoichSubSSTP/runtest,
	  test_problems/cathermo/stoichSubSSTP/sortAlgorithms.cpp,
	  test_problems/cathermo/stoichSubSSTP/sortAlgorithms.h,
	  test_problems/cathermo/stoichSubSSTP/stoichSubSSTP.cpp,
	  tools/doc/Cantera.cfg.in: Doxygen update for StoichSubstanceSSTP
	  Added test problem for  StoichSubstanceSSTP.

2007-02-23 16:51  hkmoffa

	* Cantera/src/EdgePhase.h, Cantera/src/ThermoPhase.h,
	  Cantera/src/thermo/HMWSoln.cpp, Cantera/src/thermo/HMWSoln.h,
	  test_problems/Makefile.in,
	  test_problems/ChemEquil_gri_matrix/.cvsignore,
	  test_problems/ChemEquil_gri_pairs/.cvsignore,
	  test_problems/ChemEquil_ionizedGas/.cvsignore,
	  test_problems/ChemEquil_red1/.cvsignore,
	  test_problems/cathermo/HMW_test_1/.cvsignore,
	  test_problems/cathermo/HMW_test_1/HMW_test_1.cpp,
	  test_problems/cathermo/HMW_test_1/output_noD_blessed.txt,
	  test_problems/cathermo/HMW_test_1/runtest,
	  test_problems/min_python/negATest/.cvsignore,
	  test_problems/python/.cvsignore, tools/doc/Cantera.cfg.in:
	  doxygen update:     Added EdgePhase Worked on test suite:
	  HMW_Test_1 passes now whether Debug_Mode is turned on or not.

2007-02-23 08:52  hkmoffa

	* Cantera/src/IdealGasPhase.h, Cantera/src/SurfPhase.cpp,
	  Cantera/src/SurfPhase.h, Cantera/src/ThermoPhase.h,
	  Cantera/src/importCTML.cpp,
	  test_problems/diamondSurf/Makefile.in,
	  test_problems/diamondSurf/runDiamond.cpp,
	  tools/doc/Cantera.cfg.in: Doxygen update for SurfPhase Also added
	  a Surfphase(XML_node &) constructor.

2007-02-20 06:37  dggoodwin

	* ext/tpx/: CFluid.cpp, CFluid.h, CGas.cpp, CLK.cpp, CLK.h,
	  ck_gas.cpp, ck_gas.h: removed old unused files

2007-02-19 18:00  hkmoffa

	* Cantera/src/IdealGasPhase.cpp, Cantera/src/IdealGasPhase.h,
	  Cantera/src/ShomateThermo.h, Cantera/src/SpeciesThermo.h,
	  Cantera/src/SpeciesThermoInterpType.h,
	  Cantera/src/SpeciesThermoMgr.h, Cantera/src/ThermoPhase.h,
	  Cantera/src/global.h, test_problems/Makefile.in,
	  test_problems/python/Makefile.in, tools/doc/Cantera.cfg.in:
	  Doxygen update:    Added IdealGasPhase to doxygen    Filled in a
	  couple of missing functions in IdealGasPhase Fixed clean rule and
	  depends rule in test_problems

2007-02-17 14:34  dggoodwin

	* Cantera/src/oneD/Domain1D.h: bug fix

2007-02-17 03:35  dggoodwin

	* Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/importCTML.cpp,
	  Cantera/src/stringUtils.cpp, win32/vc7/cantera.sln,
	  win32/vc7/SetupCantera/SetupCantera.vdproj,
	  win32/vc7/SetupCantera/SetupCanteraLite.vdproj,
	  win32/vc7/Sundials/CVODES/CVODES.vcproj,
	  win32/vc7/Sundials/NVEC_SER/NVEC_SER.vcproj,
	  win32/vc7/Sundials/SUNDIALS_SHARED/SUNDIALS_SHARED.vcproj,
	  win32/vc7/cantera/cantera.vcproj, win32/vc7/ck2cti/ck2cti.vcproj,
	  win32/vc7/clib/clib.vcproj, win32/vc7/config_h/config_h.vcproj,
	  win32/vc7/converters/converters.vcproj,
	  win32/vc7/ctmatlab/ctmatlab.vcproj,
	  win32/vc7/ctpython/ctpython.vcproj,
	  win32/vc7/cxxutils/cxxutils.vcproj,
	  win32/vc7/f2c_blas/f2c_blas.vcproj,
	  win32/vc7/f2c_lapack/f2c_lapack.vcproj,
	  win32/vc7/f2c_libs/f2c_libs.vcproj,
	  win32/vc7/f2c_math/f2c_math.vcproj, win32/vc7/oneD/oneD.vcproj,
	  win32/vc7/tpx/tpx.vcproj, win32/vc7/transport/transport.vcproj,
	  win32/vc7/zeroD/zeroD.vcproj: changes for Windows

2007-02-17 02:48  dggoodwin

	* Cantera/clib/src/ctxml.cpp, Cantera/clib/src/ctxml.h,
	  Cantera/python/Cantera/Interface.py,
	  Cantera/python/Cantera/XML.py,
	  Cantera/python/Cantera/importFromFile.py,
	  Cantera/python/Cantera/solution.py,
	  Cantera/python/src/ctxml_methods.cpp, Cantera/src/global.h,
	  Cantera/src/transport/TransportFactory.cpp, ext/f2c_libs/arith.h,
	  tools/src/cti2ctml.cpp: added debug flag

2007-02-16 16:10  dggoodwin

	* Cantera/src/ctml.h: added debug flag

2007-02-16 16:09  dggoodwin

	* Cantera/src/: ct2ctml.cpp, misc.cpp: added debug flag, changed
	  log file to be written to tmpDir()

2007-02-16 15:35  hkmoffa

	* Cantera/src/ConstCpPoly.cpp, Cantera/src/ConstCpPoly.h,
	  Cantera/src/GeneralSpeciesThermo.cpp, Cantera/src/Mu0Poly.cpp,
	  Cantera/src/Mu0Poly.h, Cantera/src/SpeciesThermoInterpType.h,
	  tools/doc/Cantera.cfg.in: Doxygen update of Mu0Poly and
	  ConstCpPoly

2007-02-16 13:09  hkmoffa

	* Cantera/src/GeneralSpeciesThermo.cpp,
	  Cantera/src/GeneralSpeciesThermo.h, Cantera/src/NasaPoly1.h,
	  Cantera/src/NasaPoly2.h, Cantera/src/SpeciesThermo.h,
	  tools/doc/Cantera.cfg.in: Doxygen update   Worked on including
	  GeneralSpeciesThermo

2007-02-16 09:03  hkmoffa

	* Cantera/src/GeneralSpeciesThermo.cpp,
	  Cantera/src/GeneralSpeciesThermo.h, Cantera/src/NasaPoly1.h,
	  Cantera/src/NasaThermo.h, Cantera/src/ShomatePoly.h,
	  Cantera/src/ShomateThermo.h, Cantera/src/SimpleThermo.h,
	  Cantera/src/SpeciesThermo.h,
	  Cantera/src/SpeciesThermoInterpType.h,
	  Cantera/src/SpeciesThermoMgr.h,
	  test_problems/diamondSurf/runtest, tools/doc/Cantera.cfg.in:
	  Doxygen additions - Focused on documenting the Shomate
	  Polynomials.

2007-02-14 09:43  hkmoffa

	* Cantera/src/: GeneralSpeciesThermo.cpp, GeneralSpeciesThermo.h,
	  NasaThermo.h, ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h,
	  SpeciesThermoMgr.h, transport/TransportBase.h: Made the function
	  reportParams() in the SpeciesThermo class a const function.
	  Added "None" to TransportBase.h. I think I had taken it out
	  inadvertently from one of the other .h files. It's needed here to
	  specify no transport. (maybe time for using enums)

2007-02-13 16:51  hkmoffa

	* tools/doc/Cantera.cfg.in: Added nasa polynomials.

2007-02-13 16:51  hkmoffa

	* Cantera/src/: NasaPoly1.h, NasaPoly2.h, NasaThermo.h,
	  SpeciesThermo.h, SpeciesThermoInterpType.h: Doxygen update:
	  Added Nasa polynomial routines to doxygen docs.

2007-02-13 07:44  hkmoffa

	* tools/doc/: Cantera.cfg.in, doxyinput/exceptions.txt: Added
	  files.

2007-02-13 07:43  hkmoffa

	* Cantera/src/: GeneralSpeciesThermo.h, NasaThermo.h,
	  SpeciesThermo.h, SpeciesThermoFactory.cpp,
	  SpeciesThermoFactory.h, SpeciesThermoInterpType.h,
	  SpeciesThermoMgr.h, speciesThermoTypes.h: Doxygen update
	  Starting documenting the species standard state routines.

2007-02-12 15:53  hkmoffa

	* Cantera/src/ct2ctml.cpp: Fixed an error on linux.  The quotes
	  around the path names now only occur in strings that will be
	  processed by shells. The shells will strip the double quotes.

2007-02-11 09:09  dggoodwin

	* Cantera/src/ct2ctml.cpp: added support for Python and temp
	  directory paths that contain spaces

2007-02-11 08:27  dggoodwin

	* Cantera/src/oneD/: Domain1D.h, OneDim.cpp: added option to
	  specify domain bandwidths

2007-02-10 05:54  dggoodwin

	* Cantera/fortran/src/: cantera_thermo.f90, fct_interface.f90:
	  updated equilibrate to use 2-character string rather than an
	  integer.

2007-02-09 14:12  hkmoffa

	* tools/doc/Cantera.cfg.in: Added ThermoFactory.

2007-02-09 14:12  hkmoffa

	* Cantera/src/: ThermoFactory.cpp, ThermoFactory.h: Doxygen update
	  -> Added ThermoFactory

2007-02-09 09:49  hkmoffa

	* tools/doc/Cantera.cfg.in: Added importPhase

2007-02-09 09:48  hkmoffa

	* Cantera/src/: KineticsFactory.cpp, ThermoPhase.h, global.h,
	  importCTML.cpp, importCTML.h: Added the importPhase functions to
	  doxygen.  No code changes.

2007-02-08 08:54  hkmoffa

	* Cantera/src/: ThermoPhase.h, thermo/VPStandardStateTP.cpp,
	  thermo/VPStandardStateTP.h: Doxygen update ov VPStandardStateTP.
	  Took out unnecessary member functions and doxygen documentation.
	  Changed _updateStandardStateThermo() and
	  _updateRefStateThermo()  to virtual protected functions, which is
	  a necessary condition for them to be useful.

2007-02-07 13:27  hkmoffa

	* tools/doc/Cantera.cfg.in: Added some files.

2007-02-07 13:26  hkmoffa

	* Cantera/src/: ThermoPhase.cpp, ThermoPhase.h, importCTML.cpp,
	  thermo/SingleSpeciesTP.cpp, thermo/SingleSpeciesTP.h: Doxygen
	  update. Added SingleSpeciesTP to doxygen.   I took out overloaded
	  functions that weren't doing anything.

2007-02-02 11:24  dggoodwin

	* Cantera/src/: ct2ctml.cpp, misc.cpp: windows bug fixes by Bert
	  Bell

2007-01-31 17:14  hkmoffa

	* Cantera/src/Constituents.cpp, Cantera/src/Constituents.h,
	  Cantera/src/Elements.cpp, Cantera/src/Elements.h,
	  Cantera/src/Kinetics.h, Cantera/src/Phase.cpp,
	  Cantera/src/Phase.h, Cantera/src/State.h,
	  Cantera/src/ThermoPhase.h, Cantera/src/ct_defs.h,
	  Cantera/src/global.h, Cantera/src/logger.h, Cantera/src/units.h,
	  Cantera/src/utilities.h, Cantera/src/thermo/IdealMolalSoln.cpp,
	  Cantera/src/thermo/IdealMolalSoln.h,
	  Cantera/src/thermo/IdealSolidSolnPhase.h,
	  Cantera/src/thermo/MolalityVPSSTP.cpp,
	  Cantera/src/thermo/MolalityVPSSTP.h,
	  Cantera/src/thermo/VPStandardStateTP.h, tools/doc/Cantera.cfg.in:
	  doxygen update.     This commit doesn't change any code. Only the
	  doxygen related  documentation has been updated. The warning
	  levels from doxygen have been increased, so that undocumented
	  parameters now cause a warning to be issued.	This commit
	  eliminates these warning messages.

2007-01-31 08:26  hkmoffa

	* Cantera/src/thermo/: IdealGasPDSS.cpp, IdealGasPDSS.h: Added
	  these files. The objects are under construction.

2007-01-27 08:54  dggoodwin

	* Cantera/src/: BasisOptimize.cpp, misc.cpp: misc fixes

2007-01-26 13:36  hkmoffa

	* Cantera/src/Constituents.h, Cantera/src/GasKineticsWriter.h,
	  Cantera/src/Kinetics.h, Cantera/src/Phase.h, Cantera/src/State.h,
	  Cantera/src/ThermoPhase.h, Cantera/src/ct_defs.h,
	  Cantera/src/ctml.cpp, Cantera/src/global.h, Cantera/src/logger.h,
	  Cantera/src/misc.cpp, Cantera/src/units.h,
	  Cantera/src/utilities.h, Cantera/src/thermo/IdealMolalSoln.cpp,
	  Cantera/src/thermo/IdealMolalSoln.h,
	  Cantera/src/thermo/IdealSolidSolnPhase.h,
	  Cantera/src/thermo/MolalityVPSSTP.cpp,
	  Cantera/src/thermo/MolalityVPSSTP.h,
	  Cantera/src/thermo/VPStandardStateTP.h, tools/doc/Cantera.cfg.in:
	  Doxygen update    I upped the warning levels within doxygen and
	  then filled in the missing information within the currently
	  covered files.  I also created a few more doxygen modules, aiming
	  towards getting 100% coverage of classes within at least one
	  doxygen module.

	  My hope here is to start adding doxygen documentation for the
	  strong electrolyte thermodynamics in the near future.

2007-01-24 16:12  hkmoffa

	* Cantera/src/Kinetics.cpp, Cantera/src/ThermoPhase.cpp,
	  Cantera/src/ctexceptions.h, Cantera/src/global.h,
	  Cantera/src/misc.cpp, Cantera/src/thermo/IdealSolidSolnPhase.cpp,
	  Cantera/src/thermo/MolalityVPSSTP.cpp,
	  Cantera/src/thermo/VPStandardStateTP.cpp,
	  tools/doc/doxyinput/thermo.txt: Doxygen update:   I worked on
	  upgrading the Cantera Error Handling section and I eliminated all
	  of the doxygen warning messages that I encountered.

2007-01-12 15:42  hkmoffa

	* test_problems/: ChemEquil_ionizedGas/ionizedGasEquil.cpp,
	  ChemEquil_ionizedGas/output_blessed.txt,
	  ChemEquil_red1/basopt_red1.cpp: Small changes to rebaseline
	  against results.

2007-01-12 15:41  hkmoffa

	* Cantera/src/: BasisOptimize.cpp, ChemEquil.cpp, ChemEquil.h,
	  MultiPhase.h, ThermoPhase.cpp, ThermoPhase.h, sort.cpp,
	  stringUtils.cpp, stringUtils.h, thermo/DebyeHuckel.h,
	  thermo/HMWSoln.h, thermo/IdealMolalSoln.h,
	  thermo/MolalityVPSSTP.h, zeroD/.cvsignore: Changed the
	  estimateEP_Brinkley convergence criteria to more stringent than
	  the main convergence criteria in equilibrium(). This was
	  necessary to avoid another nonconvergence case. You don't want
	  equilibrate() routine's matrix algorithm to handle
	  ill-conditioned matrices.

	  Changed the storage of element potentials. Now, dimensionless
	  element potentials are storred, instead of dimensional one. There
	  is less dependence on temperature.

	  All debugging print statements now use Cantera's writelog()
	  utility.

2007-01-01 16:32  hkmoffa

	* test_problems/Makefile.in, configure, configure.in: Added another
	  test.

2007-01-01 16:31  hkmoffa

	* test_problems/ChemEquil_red1/: .cvsignore, Makefile.in,
	  basopt_red1.cpp, output_blessed.txt, red1.xml, runtest: Added a
	  test for nComponents < number of elements

2007-01-01 16:30  hkmoffa

	* Cantera/src/ChemEquil.cpp: Changes to handle systems where the
	  number of components is less than the number of elements.

2007-01-01 13:24  hkmoffa

	* configure, configure.in: Added a new test.

2007-01-01 13:24  hkmoffa

	* test_problems/Makefile.in: Added a new test

2007-01-01 13:23  hkmoffa

	* test_problems/ChemEquil_ionizedGas/: .cvsignore, Makefile.in,
	  air_below6000K.cti, air_below6000K.xml, ionizedGasEquil.cpp,
	  output_blessed.txt, runtest: Added new test for ionized species.

2007-01-01 13:20  hkmoffa

	* Cantera/src/: BasisOptimize.cpp, ChemEquil.cpp, ChemEquil.h,
	  ThermoPhase.cpp: Modification to some of the ChemEquil algorithms
	  to handle charged species effectively and to handle equilibrium
	  situations where the number of components is less than the number
	  of elements.

2006-12-14 12:51  hkmoffa

	* Cantera/src/: IdealGasPhase.cpp, State.cpp, oneD/Domain1D.cpp,
	  zeroD/Wall.cpp: solaris port	 std:: additions

2006-12-14 10:47  hkmoffa

	* examples/cxx/Makefile.in: solaris port CXX_depends addition

2006-12-14 10:46  hkmoffa

	* ext/: f2c_blas/Makefile.in, f2c_lapack/Makefile.in,
	  f2c_libs/arith.h, f2c_libs/f2c.h, f2c_math/Makefile.in,
	  f2c_recipes/Makefile.in, tpx/Makefile.in: solaris port
	  CXX_DEPENDS variable addition

2006-12-14 10:43  hkmoffa

	* test_problems/: ChemEquil_gri_matrix/Makefile.in,
	  ChemEquil_gri_pairs/Makefile.in, cathermo/DH_graph_1/Makefile.in,
	  cathermo/HMW_graph_CpvT/Makefile.in,
	  cathermo/HMW_graph_GvI/Makefile.in,
	  cathermo/HMW_graph_GvT/Makefile.in,
	  cathermo/HMW_graph_HvT/Makefile.in,
	  cathermo/HMW_graph_VvT/Makefile.in,
	  cathermo/HMW_test_1/Makefile.in, cathermo/HMW_test_3/Makefile.in,
	  cathermo/ims/Makefile.in, cathermo/issp/Makefile.in,
	  cathermo/testIAPWS/Makefile.in,
	  cathermo/testIAPWSPres/Makefile.in,
	  cathermo/testIAPWSTripP/Makefile.in,
	  cathermo/testWaterPDSS/Makefile.in,
	  cathermo/testWaterTP/Makefile.in, diamondSurf/Makefile.in,
	  fracCoeff/Makefile.in, min_python/minDiamond/Makefile.in,
	  min_python/negATest/Makefile.in, negATest/Makefile.in,
	  silane_equil/Makefile.in, surfkin/Makefile.in: solaris port added
	  the CXX_DEPENDS variable.

2006-12-14 10:42  hkmoffa

	* Cantera/: clib/src/Makefile.in, cxx/demos/Makefile.in,
	  cxx/src/Makefile.in, fortran/src/Makefile.in, matlab/Makefile.in,
	  src/Makefile.in, src/converters/Makefile.in,
	  src/oneD/Makefile.in, src/thermo/Makefile.in,
	  src/transport/Makefile.in, src/zeroD/Makefile.in,
	  user/Makefile.in: solaris port Added the @CXX_DEPENDS@ variable.

2006-12-14 10:40  hkmoffa

	* configure: Added CXX_DEPENDS

2006-12-14 10:39  hkmoffa

	* configure.in: solaris port: Added a CXX_DEPENDS variable.

2006-12-14 10:36  hkmoffa

	* Cantera/src/: ShomatePoly.h, ct_defs.h: solaris port std::
	  additions

2006-12-14 10:34  hkmoffa

	* Cantera/src/: LatticePhase.h, MultiPhase.h: solaris port

2006-12-14 10:32  hkmoffa

	* Cantera/src/: utilities.h, xml.h, InterfaceKinetics.h: solaris
	  port std:: additions

2006-12-14 10:31  hkmoffa

	* Cantera/src/: Group.h, IdealGasPhase.h: solaris port std::
	  additions.

2006-12-14 10:29  hkmoffa

	* Cantera/src/: Func1.h, GasKinetics.h: solaris port std::
	  additions

2006-12-14 10:28  hkmoffa

	* Cantera/src/: StoichManager.h, ThermoPhase.h: solaris port std::
	  additions.

2006-12-14 10:24  hkmoffa

	* Cantera/src/: NasaPoly1.h, NasaPoly2.h: solaris port std::
	  additions

2006-12-14 10:17  hkmoffa

	* Cantera/src/: BandMatrix.h, ConstDensityThermo.h, EdgeKinetics.h:
	  solaris port; std:: additions

2006-12-14 10:11  hkmoffa

	* Cantera/src/: logger.h, stringUtils.h: solaris port:	 std:: of
	  exit() and atoi, atof

2006-12-14 10:07  hkmoffa

	* Cantera/src/State.h: solaris port:   std::inner_product()

2006-12-14 10:04  hkmoffa

	* Cantera/src/transport/MultiTransport.h: solaris port: std::copy

2006-12-14 10:03  hkmoffa

	* Cantera/src/oneD/: Domain1D.h, Inlet1D.h: solaris port:    std::
	  applied to copy()

2006-12-14 09:48  dggoodwin

	* Cantera/matlab/: setup_matlab.py.in,
	  cantera/private/phasemethods.cpp,
	  cantera/private/thermomethods.cpp: fixed minor bugs that kept
	  toolbox from building under R2006b -- dont call mxGetPr with a
	  char variable --.

2006-12-14 09:47  dggoodwin

	* configure.in, preconfig: improved detection of MATLAB

2006-12-14 08:53  hkmoffa

	* Cantera/src/oneD/StFlow.h: solaris port:   sqrt to std:sqrt

2006-12-14 08:51  hkmoffa

	* Cantera/src/zeroD/FlowDevice.h: solaris port:    std::copy

2006-12-14 08:46  hkmoffa

	* Cantera/src/Array.h: Added std:: to fill() command.	  solaris
	  port issues

2006-12-11 18:23  hkmoffa

	* Cantera/src/: BasisOptimize.cpp, ChemEquil.cpp, ChemEquil.h,
	  MultiPhase.h, MultiPhaseEquil.cpp: Upgraded the BasisOptimize
	  file. It now has been tested a bit more.  ElementRearrange()
	  function has been added to it.

	  ChemEquil has been upgraded. It now uses BasisOptimize. A better
	  estimateElementPotentials() function has been installed that
	  doesn't lead to as many stalls in the main algorithm. This is
	  achieved by making sure that estimated mole fractions of
	  component species are significant.

	  Various tweaks to estimateEP_Brinkley() has been added. It now
	  passes the gri30 test problem in the fuego_tabular_props
	  application.

2006-12-11 10:42  hkmoffa

	* Cantera/src/BasisOptimize.cpp: Fixed a potential unsatisfied
	  external, if someone were to define DEBUG_HKM.

2006-12-11 10:29  hkmoffa

	* Cantera/src/: BasisOptimize.cpp, ChemEquil.cpp, ChemEquil.h,
	  Makefile.in, MultiPhase.cpp, MultiPhase.h: Utility commit:
	  Fixed an error in ChemEquil.cpp where there was an overwrite of
	  an	array.	   Added a getMoles() command to MultiPhase object.
	  Added the file BasisOptimize which calculates the number of
	  components  in a multiphase problem rigorously, using a QR
	  factorization of the stoichiometric coefficent matrix, and
	  calculates an optimized basis set of components using those
	  species with the largest concentrations.  It also calculates the
	  formationRxnMatrix based on those components.  This routine isn't
	  hooked into anything yet.

2006-11-28 12:19  hkmoffa

	* test_problems/cathermo/: DH_graph_1/DH_graph_1.cpp,
	  HMW_graph_CpvT/HMW_graph_CpvT.cpp,
	  HMW_graph_GvI/HMW_graph_GvI.cpp, HMW_graph_HvT/HMW_graph_HvT.cpp,
	  HMW_graph_VvT/HMW_graph_VvT.cpp, HMW_test_1/HMW_test_1.cpp,
	  HMW_test_3/HMW_test_3.cpp: Added namespace std

2006-11-28 12:15  hkmoffa

	* test_problems/cathermo/HMW_graph_GvT/HMW_graph_GvT.cpp: added
	  namespace std

2006-11-28 12:14  hkmoffa

	* test_problems/cathermo/testWaterTP/testWaterTP.cpp: Added
	  namespace Cantera.

2006-11-28 12:13  hkmoffa

	* test_problems/cathermo/testWaterPDSS/testWaterPDSS.cpp:
	  Eliminated unused variables.

2006-11-28 12:11  hkmoffa

	* test_problems/min_python/negATest/negATest.cpp: Added the
	  namespace std;

2006-11-28 10:44  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp,
	  HMWSoln.h, HMWSoln_input.cpp, IdealMolalSoln.cpp,
	  IdealMolalSoln.h, IdealSolidSolnPhase.h, MolalityVPSSTP.cpp,
	  MolalityVPSSTP.h, PDSS.cpp, PDSS.h, SingleSpeciesTP.cpp,
	  SingleSpeciesTP.h, VPStandardStateTP.cpp, VPStandardStateTP.h,
	  WaterPDSS.cpp, WaterPDSS.h, WaterTP.cpp, WaterTP.h: Uupdaetd the
	  structure of the namespaces so that it would compile.

2006-11-28 10:03  hkmoffa

	* Cantera/src/: CVode.h, ODE_integrators.cpp: Added namespace
	  qualifiers to the string type.

2006-11-27 13:43  dggoodwin

	* ChangeLog, configure.in, preconfig, Cantera/clib/src/Cabinet.h,
	  Cantera/clib/src/Storage.h, Cantera/clib/src/clib_defs.h,
	  Cantera/clib/src/ct.cpp, Cantera/cxx/demos/example_utils.h,
	  Cantera/cxx/demos/rankine.cpp, Cantera/cxx/include/Cantera.h,
	  Cantera/cxx/include/Edge.h, Cantera/cxx/include/GRI30.h,
	  Cantera/cxx/include/IdealGasMix.h,
	  Cantera/cxx/include/IncompressibleSolid.h,
	  Cantera/cxx/include/Interface.h, Cantera/cxx/include/Metal.h,
	  Cantera/cxx/include/PureFluid.h,
	  Cantera/cxx/include/importPhase.h, Cantera/cxx/include/zerodim.h,
	  Cantera/cxx/src/cxxutils.cpp, Cantera/fortran/src/flib_defs.h,
	  Cantera/src/Array.h, Cantera/src/ArrayViewer.h,
	  Cantera/src/BandMatrix.cpp, Cantera/src/BandMatrix.h,
	  Cantera/src/CVodesIntegrator.h, Cantera/src/Constituents.h,
	  Cantera/src/DAE_Solver.h, Cantera/src/EdgeKinetics.h,
	  Cantera/src/Elements.cpp, Cantera/src/Elements.h,
	  Cantera/src/Enhanced3BConc.h, Cantera/src/FalloffMgr.h,
	  Cantera/src/GasKinetics.h, Cantera/src/GeneralSpeciesThermo.h,
	  Cantera/src/Group.cpp, Cantera/src/Group.h,
	  Cantera/src/ImplicitSurfChem.cpp, Cantera/src/ImplicitSurfChem.h,
	  Cantera/src/Integrator.h, Cantera/src/InterfaceKinetics.cpp,
	  Cantera/src/InterfaceKinetics.h, Cantera/src/Kinetics.h,
	  Cantera/src/KineticsFactory.cpp, Cantera/src/KineticsFactory.h,
	  Cantera/src/LatticePhase.h, Cantera/src/LatticeSolidPhase.cpp,
	  Cantera/src/LatticeSolidPhase.h, Cantera/src/Mu0Poly.cpp,
	  Cantera/src/Mu0Poly.h, Cantera/src/MultiPhase.cpp,
	  Cantera/src/MultiPhase.h, Cantera/src/MultiPhaseEquil.cpp,
	  Cantera/src/MultiPhaseEquil.h, Cantera/src/Phase.cpp,
	  Cantera/src/Phase.h, Cantera/src/RateCoeffMgr.h,
	  Cantera/src/ReactionData.h, Cantera/src/ReactionPath.cpp,
	  Cantera/src/ReactionPath.h, Cantera/src/ReactionStoichMgr.cpp,
	  Cantera/src/ReactionStoichMgr.h, Cantera/src/ResidEval.h,
	  Cantera/src/RxnRates.h, Cantera/src/SpeciesThermo.h,
	  Cantera/src/SpeciesThermoFactory.cpp,
	  Cantera/src/SpeciesThermoFactory.h,
	  Cantera/src/SpeciesThermoMgr.h, Cantera/src/StoichManager.h,
	  Cantera/src/SurfPhase.h, Cantera/src/ThermoFactory.cpp,
	  Cantera/src/ThermoFactory.h, Cantera/src/ThermoPhase.cpp,
	  Cantera/src/ThermoPhase.h, Cantera/src/ThirdBodyMgr.h,
	  Cantera/src/ct2ctml.cpp, Cantera/src/ct_defs.h,
	  Cantera/src/ctexceptions.h, Cantera/src/ctml.cpp,
	  Cantera/src/ctml.h, Cantera/src/ctvector.h, Cantera/src/global.h,
	  Cantera/src/importCTML.cpp, Cantera/src/importCTML.h,
	  Cantera/src/logger.h, Cantera/src/misc.cpp,
	  Cantera/src/phasereport.cpp, Cantera/src/plots.cpp,
	  Cantera/src/plots.h, Cantera/src/polyfit.h,
	  Cantera/src/speciesThermoTypes.h, Cantera/src/stringUtils.cpp,
	  Cantera/src/stringUtils.h, Cantera/src/units.h,
	  Cantera/src/vec_functions.h, Cantera/src/xml.h,
	  Cantera/src/oneD/Domain1D.cpp, Cantera/src/oneD/Domain1D.h,
	  Cantera/src/oneD/Inlet1D.h, Cantera/src/oneD/MultiNewton.cpp,
	  Cantera/src/oneD/MultiNewton.h, Cantera/src/oneD/OneDim.cpp,
	  Cantera/src/oneD/OneDim.h, Cantera/src/oneD/Resid1D.h,
	  Cantera/src/oneD/Sim1D.cpp, Cantera/src/oneD/Sim1D.h,
	  Cantera/src/oneD/Solid1D.h, Cantera/src/oneD/StFlow.cpp,
	  Cantera/src/oneD/StFlow.h, Cantera/src/oneD/Surf1D.h,
	  Cantera/src/oneD/boundaries1D.cpp,
	  Cantera/src/oneD/newton_utils.cpp, Cantera/src/oneD/refine.h,
	  Cantera/src/transport/DustyGasTransport.cpp,
	  Cantera/src/transport/MMCollisionInt.cpp,
	  Cantera/src/transport/MixTransport.cpp,
	  Cantera/src/transport/MultiTransport.cpp,
	  Cantera/src/transport/MultiTransport.h,
	  Cantera/src/transport/SolidTransport.cpp,
	  Cantera/src/transport/TransportBase.h,
	  Cantera/src/transport/TransportFactory.cpp,
	  Cantera/src/zeroD/ConstPressureReactor.cpp,
	  Cantera/src/zeroD/ConstPressureReactor.h,
	  Cantera/src/zeroD/FlowDevice.cpp, Cantera/src/zeroD/FlowDevice.h,
	  Cantera/src/zeroD/FlowReactor.cpp,
	  Cantera/src/zeroD/FlowReactor.h, Cantera/src/zeroD/Reactor.cpp,
	  Cantera/src/zeroD/Reactor.h, Cantera/src/zeroD/ReactorBase.cpp,
	  Cantera/src/zeroD/ReactorBase.h,
	  Cantera/src/zeroD/ReactorFactory.cpp,
	  Cantera/src/zeroD/ReactorFactory.h,
	  Cantera/src/zeroD/ReactorNet.cpp, Cantera/src/zeroD/ReactorNet.h,
	  Cantera/src/zeroD/Wall.cpp, Cantera/src/zeroD/Wall.h,
	  Cantera/user/user.cpp, examples/cxx/example_utils.h,
	  examples/cxx/examples.cpp, examples/cxx/kinetics_example1.cpp,
	  ext/f2c_libs/arith.h,
	  test_problems/ChemEquil_gri_matrix/gri_matrix.cpp,
	  test_problems/ChemEquil_gri_pairs/gri_pairs.cpp,
	  test_problems/negATest/negATest.cpp,
	  test_problems/silane_equil/IdealGasMix.h,
	  test_problems/silane_equil/silane_equil.cpp,
	  test_problems/surfkin/Interface.h,
	  test_problems/surfkin/surfdemo.cpp, tools/src/cti2ctml.cpp:
	  removed using namespace statements from Cantera header files, and
	  fully qualified most members of std (string, vector< >, etc.) in
	  header files. User programs may need to have "using namespace"
	  statements added.

2006-11-14 01:20  dggoodwin

	* Cantera/python/examples/reactors/surf_pfr.py: added pfr example

2006-11-14 01:18  dggoodwin

	* Cantera.README: Cantera.README no longer used

2006-11-14 00:40  dggoodwin

	* configure, configure.in, Cantera/src/MultiPhaseEquil.cpp: minor
	  cleanup

2006-11-13 11:55  dggoodwin

	* Cantera/src/CVodesIntegrator.h, ext/f2c_libs/arith.h,
	  win32/vc7/Sundials/CVODES/CVODES.vcproj,
	  win32/vc7/Sundials/NVEC_SER/NVEC_SER.vcproj,
	  win32/vc7/Sundials/SUNDIALS_SHARED/SUNDIALS_SHARED.vcproj,
	  win32/vc7/cantera/cantera.vcproj: minor cleanup

2006-11-13 11:46  dggoodwin

	* win32/vc7/Sundials/sundials/sundials_config.h: added
	  sundials_config.h so that users can build sundials without having
	  to run configure

2006-11-13 08:39  dggoodwin

	* ChangeLog, preconfig, ext/f2c_libs/arith.h,
	  test_problems/python/runtest: minor changes

2006-11-12 20:23  dggoodwin

	* License.rtf, preconfig, winconfig.h, ext/f2c_libs/arith.h: minor
	  cleanup

2006-11-12 20:22  dggoodwin

	* win32/vc7/demos/: NASA_coeffs.vcproj, combustor.vcproj,
	  flamespeed.vcproj, kinetics1.vcproj: added example project files

2006-11-12 20:21  dggoodwin

	* win32/vc7/: SetupCantera/SetupCantera.vdproj,
	  SetupCantera/SetupCanteraLite.vdproj, cantera.sln,
	  Sundials/CVODES/CVODES.vcproj,
	  Sundials/CVODES_DENSE/CVODES_DENSE.vcproj,
	  Sundials/IDA/IDA.vcproj, Sundials/KINSOL/KINSOL.vcproj,
	  Sundials/NVEC_SER/NVEC_SER.vcproj,
	  Sundials/SUNDIALS_SHARED/SUNDIALS_SHARED.vcproj,
	  cantera/cantera.vcproj, demos/CanteraDemos.sln,
	  demos/Rankine.vcproj, demos/demo.vcproj, zeroD/zeroD.vcproj:
	  update of project files

2006-11-11 06:12  dggoodwin

	* win32/vc7/: cantera.sln, cantera_no_sundials.sln,
	  SetupCantera/SetupCantera.vdproj, cantera/cantera.vcproj: added
	  no_sundials version

2006-11-11 06:10  dggoodwin

	* win32/vc7/Sundials/: Sundials.sln,
	  CVODES_DENSE/CVODES_DENSE.vcproj: added cvodes_dense

2006-11-11 05:23  dggoodwin

	* preconfig, Cantera/src/Makefile.in,
	  Cantera/src/zeroD/Makefile.in: minor changes to how dependencies
	  are handled in Makefiles

2006-11-10 17:38  dggoodwin

	* configure, configure.in: fixed null username

2006-11-10 17:37  dggoodwin

	* tools/src/finish_install.py.in: added writing PYTHONPATH to
	  setup_Cantera for min_Python

2006-11-10 05:48  dggoodwin

	* Cantera/src/CVodesIntegrator.h: minor cleanup

2006-11-09 05:04  dggoodwin

	* Cantera/python/examples/fuel_cells/: sofc.cti, sofc.py: added
	  fuel cell demo

2006-11-08 16:19  dggoodwin

	* Cantera/src/ThermoPhase.h: minor cleanup

2006-11-08 15:58  dggoodwin

	* Makefile.in, preconfig, Cantera/python/Cantera/OneD/onedim.py,
	  ext/f2c_libs/arith.h: install Makefiles for python demos

2006-11-08 15:14  dggoodwin

	* Cantera/python/examples/: Makefile, equilibrium/Makefile,
	  equilibrium/stoich.py, flames/Makefile, gasdynamics/Makefile,
	  kinetics/Makefile, liquid_vapor/Makefile, misc/Makefile,
	  reactors/Makefile, surface_chemistry/Makefile,
	  transport/Makefile: added Makefiles to run all demos

2006-11-07 13:03  dggoodwin

	* Cantera/src/zeroD/ReactorNet.h: added verbose, setVerbose

2006-11-07 13:02  dggoodwin

	* Cantera/src/zeroD/ReactorBase.h: added setName

2006-11-07 05:47  dggoodwin

	* Cantera/src/: State.h, State.cpp: added method concentration(int
	  k)

2006-11-06 07:27  dggoodwin

	* Cantera/cxx/demos/NASA_coeffs.cpp: added NASA polynomial example

2006-11-06 07:20  dggoodwin

	* Cantera/src/: Constituents.h, NasaPoly1.h, NasaThermo.h,
	  SpeciesThermo.h, SpeciesThermoFactory.cpp,
	  SpeciesThermoInterpType.h: added support for modifying NASA
	  polynomial coefficients

2006-11-05 07:54  dggoodwin

	* data/inputs/methane_pox_on_pt.cti: added mechanism for partial
	  oxidation of methane on platinum from the Deutschmann group

2006-11-03 12:45  dggoodwin

	* winconfig.h: updated

2006-11-03 12:44  dggoodwin

	* win32/vc7/Sundials/: CVODES/CVODES.vcproj, IDA/IDA.vcproj,
	  KINSOL/KINSOL.vcproj, NVEC_SER/NVEC_SER.vcproj,
	  SUNDIALS_SHARED/SUNDIALS_SHARED.vcproj: initial import

2006-11-02 17:32  dggoodwin

	* win32/vc7/SetupCantera/SetupCantera.vdproj,
	  win32/vc7/SetupCantera/SetupCanteraLite.vdproj,
	  win32/vc7/ctmatlab/runmlab.cmd, Cantera/python/winsetup.py,
	  License.txt: updated for Cantera 1.7

2006-10-31 11:09  dggoodwin

	* Cantera/src/ReactionStoichMgr.cpp: fixed bug that resulted in
	  incorrect computation of product concentration products when rxn
	  has 4 or more product molecules and one or more has a stoich
	  coeff > 1

2006-10-30 11:30  dggoodwin

	* configure, configure.in, preconfig, ext/f2c_libs/arith.h,
	  tools/src/finish_install.py.in: modified for cygwin

2006-10-27 13:34  dggoodwin

	* configure, configure.in, tools/src/finish_install.py.in: mods for
	  cygwin

2006-10-22 18:13  dggoodwin

	* Cantera/src/CVodesIntegrator.cpp: sundials version detection

2006-10-22 17:58  dggoodwin

	* preconfig: debug off is noe the default

2006-10-22 17:56  dggoodwin

	* Cantera/src/: ChemEquil.cpp, MultiPhaseEquil.cpp:  moved
	  declaration of nCutoff to avoid jumping over it, causing a
	  compile failure with gcc 4.0.1 on linuxChemEquil.cpp

2006-10-22 17:51  dggoodwin

	* tools/templates/cxx/demo.mak.in: removed FLIBS

2006-10-20 14:56  hkmoffa

	* test_problems/min_python/Makefile.in: Added -s to make tests.

2006-10-20 14:55  hkmoffa

	* test_problems/cathermo/HMW_graph_GvI/.cvsignore: Added a file.

2006-10-20 14:54  hkmoffa

	* test_problems/fracCoeff/runtest: Added an exit variable.

2006-10-20 14:47  hkmoffa

	* test_problems/ChemEquil_gri_matrix/output_blessed.txt: Slight
	  change to the blessed solution.

2006-10-20 14:43  hkmoffa

	* configure, configure.in, test_problems/Makefile.in: Added new
	  test directories.

2006-10-20 14:42  hkmoffa

	* Cantera/src/sort.h: Added an Id stamp.

2006-10-20 14:41  hkmoffa

	* Cantera/src/misc.cpp: Fixed an error in the LogGroup system.

2006-10-20 14:40  hkmoffa

	* Cantera/src/ChemEquil.cpp: eliminated an unused variable.

2006-10-20 14:34  hkmoffa

	* Cantera/src/: ChemEquil.cpp, ChemEquil.h: Reworking of the solver
	  algorithm within ChemEquil:

	     Much of the algorithm for relaxing the element potentials
	  to equilibrium employs the Brinkley algorithm (const T, P) (p.
	  129 Smith and Missen). This algorithm does better at relaxing the
	  system towards steady state from a bad initial guess.

	     The old algorithm now does the last little bit and it does
	  the calculation for fixed pairs other than const T, P, using the
	  Brinkley algorithm's initial guess.

	    Modified the damping algorithm in the old method. It now
	  doesn't
	  create false convergence failures when it is close to the end of
	  the calculation.

	    The new solver has been tested against a matrix of initial
	  conditions
	  for the gri30 mechanism and a 200 species jp8 mechanism.

	  Yet to do:	This routine should work but has not been checked
	  out against:	     phases with electric charge       nonideal
	  phases.     This routine should probably not yet work with
	  molality based phases.     More work may have to be done with the
	  Brinkley algorithm for     problems which suffer from
	  stoichiometric constraints. A full	 Gauss-Jordon elimination
	  step should probably be added to     flag cases where there are
	  effective stoichiometric constraints.

2006-10-20 14:22  hkmoffa

	* Cantera/src/: equil.h, equilibrate.cpp: Added more error control
	  and checking. This is needed for new test problems.

2006-10-20 14:20  hkmoffa

	* Cantera/src/MultiPhase.h: Added a couple of comments.

2006-10-20 14:19  hkmoffa

	* Cantera/src/: ThermoPhase.cpp, ThermoPhase.h: Change to the
	  function getElementPotentials(). It now returns a boolean to
	  indicate whether the object has element potentials or not.

2006-10-20 14:17  hkmoffa

	* Cantera/src/IdealGasPhase.cpp: Change to setToEquilState() to
	  guard against inf results.

2006-10-20 14:12  hkmoffa

	* test_problems/ChemEquil_gri_matrix/: .cvsignore, Makefile.in,
	  gri30.xml, gri_matrix.cpp, output_blessed.txt, runtest: Added
	  another test program for the element potential equilibrium
	  solver.  This test does a matrix of T, pres, and mixture fraction
	  for the gri30 mechanism. It does a total of 1500 calculation
	  starting from a bad initial guess.

2006-10-20 14:09  hkmoffa

	* test_problems/ChemEquil_gri_pairs/: .cvsignore, Makefile.in,
	  gri30.xml, gri_pairs.cpp, output_blessed.txt, runtest: Added
	  another test for the element potential equilibrium solver.  This
	  test covers all pair options.

2006-10-20 14:06  hkmoffa

	* test_problems/silane_equil/output_blessed.txt: Changed the
	  blessed file: printout has changed.

2006-10-10 09:02  dggoodwin

	* apps/bvp/: BoundaryValueProblem.h, README, blasius.cpp: initial
	  import

2006-10-02 15:24  hkmoffa

	* Makefile.in: Added a file to the installed demo/cxx directory. It
	  was needed so that the cxx files would compile out of the box.

2006-10-02 12:10  hkmoffa

	* Cantera/src/State.cpp: In the init() routine, I set the initial
	  mass fraction vector so that it sums to one. Previously, it was
	  set uniformly to zero. The mass fraction of species 0 is set to
	  1.   This was noticed by a user, and may have resulted in seg
	  faults before  the ThermoPhase object was properly initialized.

2006-10-02 09:38  hkmoffa

	* Cantera/fortran/f77demos/f77demos.mak.in: Fixed the Makefile that
	  gets used in the install directories.  autoconf variables needed
	  updating.

2006-08-29 09:49  hkmoffa

	* tools/testtools/csvdiff.cpp: Fixed an error for zero length
	  files.

2006-08-27 17:19  hkmoffa

	* tools/testtools/csvdiff.cpp: Added default column titles, if none
	  are supplied in the file.  This avoids a seg fault.

2006-08-21 17:38  hkmoffa

	* Makefile.in: Changed a few of the install commands to install_tsc
	  (time step check).  These are needed in a few places so make
	  doesn't do any extra work when it doesn't need to.

	  Changed a few of the "install multiple files at once" cases into
	  installations where one file is installed at a time. Some install
	  commands, including the one that comes with cantera can only
	  install one file at a time.

2006-08-21 17:34  hkmoffa

	* bin/install_tsc.in: Used the INSTALL_VERBOSE rule to check
	  whether install can use the -v flag. If it can't echo is used to
	  mimic its behavior.

2006-08-21 17:31  hkmoffa

	* configure, configure.in: Installed a rule to check if the install
	  command uses the flag -v.  I found an openbsd system where this
	  was not the case.

2006-08-21 09:44  hkmoffa

	* Cantera/Makefile.in: Added user directory to a lot of the rules.
	  Took out the cads directory.

2006-08-21 09:42  hkmoffa

	* Cantera/user/Makefile.in: Added an install rule to the Makefile

2006-08-19 17:18  hkmoffa

	* Cantera/cxx/demos/Makefile.in: Added depends include at the end
	  of the file.

2006-08-19 17:17  hkmoffa

	* Cantera/cxx/Makefile.in: Fixed clean rules.

2006-08-19 17:14  hkmoffa

	* bin/.cvsignore: Added a file.

2006-08-19 17:13  hkmoffa

	* examples/cxx/kinetics_example3.cpp: Changed the name of the input
	  routine to gri.xml from gri.ctml.  This test is always run, so it
	  must be run even if minimal python installation isn't done.
	  Therefore, xml files must be used as input.

2006-08-19 17:11  hkmoffa

	* test_problems/min_python/minDiamond/runtest: Fixed the name of
	  some environmental variables

2006-08-19 17:09  hkmoffa

	* test_problems/cathermo/HMW_test_1/HMW_test_1.cpp: Changed the
	  #ifdef name

2006-08-19 17:00  hkmoffa

	* test_problems/cathermo/HMW_graph_VvT/: HMW_graph_VvT.cpp,
	  Makefile.in, V_standalone.cpp, output_blessed.txt: Refined the
	  regression test slightly, to make it less stringent.	Added to
	  make clean rule

2006-08-19 16:54  hkmoffa

	* test_problems/cathermo/HMW_graph_CpvT/: Cp_standalone.cpp,
	  Makefile.in: Fixed warning messages and added to make clean rule

2006-08-19 16:52  hkmoffa

	* test_problems/cathermo/HMW_graph_HvT/: HMW_graph_HvT.cpp,
	  L_standalone.cpp, Makefile.in: Got rid of warning messages and
	  added to make clean rule

2006-08-19 16:48  hkmoffa

	* test_problems/cathermo/HMW_graph_GvT/Makefile.in: Added to the
	  make clean rule

2006-08-19 11:15  hkmoffa

	* ext/f2c_libs/.cvsignore: Added a directory.

2006-08-19 11:14  hkmoffa

	* ext/f2c_libs/sysdep1.h0: Added some comments about a particular
	  problem on old solaris systems.

2006-08-19 11:13  hkmoffa

	* ext/f2c_libs/err.c: Eliminated an ld warning by setting a local
	  variable as static.

2006-08-19 09:08  hkmoffa

	* Cantera/src/oneD/Sim1D.cpp: Fixed an optimization compiler
	  warning about a possible uninitialized variable.

2006-08-17 09:24  hkmoffa

	* configure, configure.in: Added lines to remove a temporary file
	  f90out

2006-08-17 08:46  hkmoffa

	* configure, configure.in: Took out a Makefile creation rule that
	  was a duplicate.

2006-08-17 08:38  hkmoffa

	* examples/cxx/.cvsignore: Added a few misc files.

2006-08-15 16:36  hkmoffa

	* ext/f2c_libs/: f2c.h, f2c.h0: Made these two files compatible, so
	  that there would be no confusion.  Changed the logical
	  definition, which wasn't being used, to int from long int.

2006-08-15 15:33  hkmoffa

	* test_problems/Makefile.in: A couple of directories were left out
	  of the clean and depends rules.

2006-08-15 15:03  hkmoffa

	* Makefile.in, configure.in: On Sun10, the cantera install is used.
	  It only accepts one file at a time.

2006-08-15 14:59  hkmoffa

	* Cantera/src/thermo/Makefile.in: This change is needed in order
	  for clean to work in some cases.

2006-08-15 14:38  hkmoffa

	* test_problems/cathermo/DH_graph_1/Makefile.in: added .depends to
	  the list of dependencies.

2006-08-14 18:12  hkmoffa

	* Makefile.in, configure.in, preconfig: Fixed some small errors in
	  the install process.

2006-08-14 15:53  hkmoffa

	* ext/f2c_libs/Makefile.in: Fixed an error in a Makefile.

2006-08-14 15:01  hkmoffa

	* ext/cvode/Makefile.in: Fixed a make clean rule in ext/cvode

2006-08-14 14:00  hkmoffa

	* test_problems/cathermo/HMW_test_3/: HMW_test_3.cpp, Makefile.in:
	  Added DEBUG_MODE flag to compilation line.

2006-08-14 13:54  hkmoffa

	* Cantera/src/thermo/Makefile.in: Added DEGUG_MODE to the defaults.

2006-08-14 13:48  hkmoffa

	* test_problems/cathermo/HMW_graph_VvT/HMW_graph_VvT.cpp: Fixed a
	  roundoff issue

2006-08-14 13:44  hkmoffa

	* test_problems/cathermo/HMW_graph_CpvT/HMW_graph_CpvT.cpp: Fixed
	  some initialization issues.

2006-08-14 13:39  hkmoffa

	* test_problems/cathermo/testIAPWS/output_blessed.txt: New blessed
	  file due to accuracy decrease.

2006-08-14 13:38  hkmoffa

	* Cantera/src/thermo/WaterPropsIAPWSphi.cpp: Slightly decreased the
	  accuracy of internal check in one case.

2006-08-14 13:32  hkmoffa

	* test_problems/cathermo/DH_graph_1/: .cvsignore, DH_graph_1.cpp,
	  runtest: Changed the logger instantiation. This apparently made a
	  difference on SUSE.  Changed the runtest script to default to the
	  correct location of CANTERA_DATA.

2006-08-14 12:32  hkmoffa

	* test_problems/cxx_ex/: .cvsignore, runtest: Relaxed the tolerance
	  on the comparison for the kin1 problem.  It had failed on SUSE
	  problems

2006-08-14 12:18  hkmoffa

	* Cantera/src/thermo/: IdealMolalSoln.cpp, WaterPDSS.h: Fixed a
	  compilation error that popped up on SUSE 9.0.

2006-07-25 09:52  hkmoffa

	* tools/doc/Makefile.in: Fixed the makefile so that it wouldn't
	  eliminate cvs files and it won't produce any warning output.

2006-07-23 10:46  hkmoffa

	* test_problems/cathermo/testWaterTP/testWaterTP.cpp: Took out
	  warnings.

2006-07-13 13:06  hkmoffa

	* test_problems/cathermo/: HMW_graph_CpvT/.cvsignore,
	  HMW_graph_CpvT/HMW_NaCl_sp1977_alt.xml,
	  HMW_graph_GvI/HMW_NaCl.xml,
	  HMW_graph_GvT/HMW_NaCl_sp1977_alt.xml, HMW_graph_HvT/.cvsignore,
	  HMW_graph_HvT/HMW_NaCl_sp1977_alt.xml, HMW_graph_VvT/.cvsignore,
	  HMW_graph_VvT/HMW_NaCl_sp1977_alt.xml, HMW_test_1/HMW_NaCl.xml,
	  HMW_test_3/HMW_NaCl_tc.xml: Change in xml data file to support
	  new changes.	standardState xml node value for water now matters.

2006-07-13 13:05  hkmoffa

	* Cantera/src/: xml.h, thermo/DebyeHuckel.cpp,
	  thermo/DebyeHuckel.h, thermo/HMWSoln.cpp,
	  thermo/HMWSoln_input.cpp: Another iteration on trying to unify
	  the water treatment between the 2 objects.

2006-07-12 08:42  hkmoffa

	* test_problems/cathermo/: Makefile.in,
	  testIAPWSTripP/testTripleP.cpp: Minor changes.

2006-07-12 08:41  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp,
	  HMWSoln.h: Unifying the water treatment between objects.  Found a
	  bug in getPartialMolarEntropy in HMWSoln that wasn't covered in
	  the test suite.

2006-07-11 17:46  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h, HMWSoln.cpp,
	  HMWSoln.h: Iteration on unifying water treatments in the 2
	  objects.

2006-07-11 10:13  hkmoffa

	* test_problems/cathermo/: HMW_test_1/.cvsignore,
	  HMW_test_3/.cvsignore, testIAPWSPres/output_blessed.txt,
	  testIAPWSPres/testPress.cpp, testIAPWSTripP/output_blessed.txt,
	  testIAPWSTripP/testTripleP.cpp, testWaterPDSS/output_blessed.txt,
	  testWaterPDSS/testWaterPDSS.cpp, testWaterTP/output_blessed.txt,
	  testWaterTP/testWaterTP.cpp: Changed some of the tests so that
	  quantities that are nominally zero should be set to zero exactly
	  if they are below a tolerance.  In this way, unconsequential
	  roundoff errors don't trigger false results.

2006-07-11 09:30  dggoodwin

	* Cantera/src/: DAE_solvers.cpp, Crystal.h, IDA_Solver.h,
	  ResidEval.h: initial import

2006-07-11 08:40  dggoodwin

	* Cantera/src/oneD/Sim1D.cpp: commented out 2 output statements

2006-07-11 08:39  dggoodwin

	* Cantera/src/stringUtils.cpp: minor cleanup

2006-07-11 08:38  dggoodwin

	* Cantera/src/misc.cpp: commented out code that will try to find a
	  cti file if the xml file is not found.

2006-07-11 08:35  dggoodwin

	* Cantera/src/RateCoeffMgr.h: minor cleanup

2006-07-11 08:34  dggoodwin

	* Cantera/src/PropertyCalculator.h: made destructor virtual

2006-07-11 08:33  dggoodwin

	* Cantera/src/: MultiPhase.cpp, MultiPhase.h: added some consts,
	  and a routine to read a multiphase mixture from an input file,
	  but this is not yet active

2006-07-11 08:31  dggoodwin

	* Cantera/src/Makefile.in: added Crystal class, DAE_Solvers

2006-07-11 08:28  dggoodwin

	* Cantera/src/: DAE_Solver.h, IDA_Solver.cpp: initial import

2006-07-11 08:28  dggoodwin

	* Cantera/src/CVodesIntegrator.h: updated for latest sundials

2006-07-11 08:25  dggoodwin

	* Cantera/src/MultiPhaseEquil.cpp: fixed minor bug that caused
	  problems in some cases when an element was excluded.

2006-07-07 11:09  hkmoffa

	* test_problems/cathermo/: Makefile.in, DH_graph_1/Makefile.in,
	  HMW_graph_CpvT/Makefile.in, HMW_graph_GvT/.cvsignore,
	  HMW_graph_GvT/Makefile.in, HMW_graph_HvT/Makefile.in,
	  HMW_graph_VvT/Makefile.in, HMW_test_1/Makefile.in,
	  HMW_test_3/Makefile.in, ims/Makefile.in, issp/Makefile.in,
	  testIAPWS/Makefile.in, testIAPWSPres/Makefile.in,
	  testIAPWSTripP/Makefile.in, testWaterPDSS/Makefile.in,
	  testWaterTP/Makefile.in: Made the testing process alot less
	  verbose. Hopefully, the bottom line pass/fail result will now be
	  more evident.

2006-07-07 11:07  hkmoffa

	* config.h.in, configure, configure.in, preconfig: Turned on and
	  documented the DEBUG_MODE capability.  It will now create a
	  config.h entry, and a Makefile.in substitution variable,
	  CANTERA_DEBUG_MODE, which can be used in the test suite.

2006-07-07 11:05  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.h, HMWSoln.cpp, HMWSoln.h,
	  HMWSoln_input.cpp: Took out an unneeded parameter B_Debye in
	  Pitzer model.  Switched to DEBUG_MODE for optional printing.

2006-07-07 09:31  hkmoffa

	* test_problems/cathermo/HMW_graph_GvT/: HMW_graph_GvT.cpp,
	  output_blessed.txt: Added some text to the output.

2006-07-06 17:34  hkmoffa

	* test_problems/cathermo/HMW_test_3/Makefile.in: Fixed a makefile
	  error.

2006-07-06 17:33  hkmoffa

	* test_problems/cathermo/HMW_test_1/Makefile.in: Fixed an error.

2006-07-06 17:28  hkmoffa

	* configure, configure.in: Added additional test directories.

2006-07-06 17:28  hkmoffa

	* test_problems/cathermo/: Makefile.in, DH_graph_1/.cvsignore,
	  DH_graph_1/DH_NaCl.xml, DH_graph_1/DH_NaCl_NM.xml,
	  DH_graph_1/DH_NaCl_NM_blessed.csv, DH_graph_1/DH_NaCl_Pitzer.xml,
	  DH_graph_1/DH_NaCl_Pitzer_blessed.csv,
	  DH_graph_1/DH_NaCl_acommon.xml,
	  DH_graph_1/DH_NaCl_acommon_blessed.csv,
	  DH_graph_1/DH_NaCl_bdotak.xml,
	  DH_graph_1/DH_NaCl_bdotak_blessed.csv,
	  DH_graph_1/DH_NaCl_blessed.csv, DH_graph_1/DH_NaCl_dilute.xml,
	  DH_graph_1/DH_NaCl_dilute_blessed.csv, DH_graph_1/DH_graph_1.cpp,
	  DH_graph_1/Makefile.in, DH_graph_1/README, DH_graph_1/runtest:
	  Added the existing test for the DebyeHuckel object.

2006-07-06 17:27  hkmoffa

	* Cantera/src/thermo/: DebyeHuckel.cpp, DebyeHuckel.h,
	  HMWSoln_input.cpp, Makefile.in: Added the DebyeHuckel object.
	  Note, this object needs a bit of work. It's not connected to the
	  real model of water yet.

2006-07-06 14:54  hkmoffa

	* test_problems/cathermo/: Makefile.in, HMW_graph_GvI/Makefile.in,
	  HMW_test_1/.cvsignore, HMW_test_1/HMW_NaCl.xml,
	  HMW_test_1/HMW_test_1.cpp, HMW_test_1/Makefile.in,
	  HMW_test_1/README, HMW_test_1/output_blessed.txt,
	  HMW_test_1/runtest, HMW_test_3/.cvsignore,
	  HMW_test_3/HMW_NaCl_tc.xml, HMW_test_3/HMW_test_3.cpp,
	  HMW_test_3/Makefile.in, HMW_test_3/README,
	  HMW_test_3/output_blessed.txt, HMW_test_3/runtest: Added 2 tests
	  with debugging turned on.

2006-07-06 14:13  hkmoffa

	* test_problems/cathermo/: Makefile.in, HMW_graph_GvI/.cvsignore,
	  HMW_graph_GvI/HMW_NaCl.xml, HMW_graph_GvI/HMW_graph_GvI.cpp,
	  HMW_graph_GvI/Makefile.in, HMW_graph_GvI/NaCl_Solid.xml,
	  HMW_graph_GvI/README, HMW_graph_GvI/T298_blessed.csv,
	  HMW_graph_GvI/T523_blessed.csv, HMW_graph_GvI/TemperatureTable.h,
	  HMW_graph_GvI/runtest, HMW_graph_GvI/sortAlgorithms.cpp,
	  HMW_graph_GvI/sortAlgorithms.h: Added the GvI test.

2006-07-06 14:12  hkmoffa

	* test_problems/cathermo/HMW_graph_VvT/: .cvsignore,
	  HMW_NaCl_sp1977_alt.xml, HMW_graph_VvT.cpp, Makefile.in,
	  NaCl_Solid.xml, README, TemperatureTable.h, V_standalone.cpp,
	  output_blessed.txt, runtest, sortAlgorithms.cpp,
	  sortAlgorithms.h: Added the excess volume test.

2006-07-06 14:00  hkmoffa

	* test_problems/cathermo/HMW_graph_CpvT/: .cvsignore,
	  Cp_standalone.cpp, HMW_NaCl_sp1977_alt.xml, HMW_graph_CpvT.cpp,
	  Makefile.in, NaCl_Solid.xml, README, TemperatureTable.h,
	  output_blessed.txt, runtest, sortAlgorithms.cpp,
	  sortAlgorithms.h: Added the Cp HMWSoln test.

2006-07-06 13:13  hkmoffa

	* test_problems/cathermo/HMW_graph_HvT/: .cvsignore,
	  HMW_NaCl_sp1977_alt.xml, HMW_graph_HvT.cpp, L_standalone.cpp,
	  Makefile.in, NaCl_Solid.xml, README, TemperatureTable.h,
	  output_blessed.txt, runtest, sortAlgorithms.cpp,
	  sortAlgorithms.h: Added another test.

2006-07-06 08:56  hkmoffa

	* test_problems/cathermo/Makefile.in: Added directory.

2006-07-06 08:56  hkmoffa

	* test_problems/cathermo/HMW_graph_GvT/: .cvsignore,
	  Gex_standalone.cpp, HMW_NaCl_sp1977_alt.xml, HMW_graph_GvT.cpp,
	  Makefile.in, NaCl_Solid.xml, README, TemperatureTable.h,
	  output_blessed.txt, runtest, sortAlgorithms.cpp,
	  sortAlgorithms.h: Added unit test for HMWSoln.

2006-07-06 08:41  hkmoffa

	* Cantera/src/thermo/electrolytes.h: Added general .h define file

2006-07-06 08:40  hkmoffa

	* Cantera/src/: importCTML.cpp, importCTML.h: Added a utility
	  routine.

2006-07-06 08:39  hkmoffa

	* Cantera/src/thermo/: HMWSoln.cpp, HMWSoln.h, HMWSoln_input.cpp,
	  IdealMolalSoln.cpp, IdealMolalSoln.h, Makefile.in,
	  MolalityVPSSTP.h: Added Pitzer Object

2006-07-05 14:25  hkmoffa

	* configure, configure.in: Added another test directory makefile.

2006-07-05 14:23  hkmoffa

	* test_problems/min_python/: Makefile.in, negATest/.cvsignore,
	  negATest/Makefile.in, negATest/negATest.cpp,
	  negATest/negATest_blessed.out, negATest/noxNeg.cti,
	  negATest/noxNeg_blessed.xml, negATest/runtest: Added another test
	  to add coverage to the ctml to xml treatment of neg A
	  coefficients.

2006-07-05 07:35  hkmoffa

	* configure, configure.in: Added a couple of test directory
	  Makefiles that were ommitted.

2006-07-03 18:11  hkmoffa

	* test_problems/cathermo/: Makefile.in, testWaterTP/.cvsignore,
	  testWaterTP/Makefile.in, testWaterTP/README,
	  testWaterTP/output_blessed.txt, testWaterTP/runtest,
	  testWaterTP/testWaterTP.cpp, testWaterTP/waterTPphase.xml: Added
	  a test for WaterTP

2006-07-03 18:04  hkmoffa

	* configure, configure.in: Added another test directory.

2006-07-03 18:04  hkmoffa

	* test_problems/cathermo/: Makefile.in, testWaterPDSS/.cvsignore,
	  testWaterPDSS/Makefile.in, testWaterPDSS/output_blessed.txt,
	  testWaterPDSS/runtest, testWaterPDSS/testWaterPDSS.cpp: Added a
	  test for WaterPDSS object.

2006-07-03 17:41  hkmoffa

	* configure, configure.in: Added a couple more tests for
	  electrochemistry.

2006-07-03 17:40  hkmoffa

	* test_problems/cathermo/Makefile.in: Added another test.

2006-07-03 17:39  hkmoffa

	* test_problems/cathermo/testIAPWSTripP/: .cvsignore, Makefile.in,
	  README, output_blessed.txt, runtest, testTripleP.cpp: Triple
	  point calcultion test routine.

2006-07-03 17:32  hkmoffa

	* test_problems/cathermo/testIAPWSPres/: .cvsignore, Makefile.in,
	  README, output_blessed.txt, runtest, testPress.cpp: Second test.

2006-07-03 17:21  hkmoffa

	* test_problems/cathermo/: Makefile.in, testIAPWS/.cvsignore,
	  testIAPWS/Makefile.in, testIAPWS/README,
	  testIAPWS/output_blessed.txt, testIAPWS/runtest,
	  testIAPWS/testIAPWSphi.cpp: Added the first test for IAPWS

2006-07-03 17:01  hkmoffa

	* Cantera/src/thermo/: IdealMolalSoln.cpp, Makefile.in, PDSS.cpp,
	  PDSS.h, WaterPDSS.cpp, WaterPDSS.h, WaterProps.cpp, WaterProps.h,
	  WaterPropsIAPWS.cpp, WaterPropsIAPWS.h, WaterPropsIAPWSphi.cpp,
	  WaterPropsIAPWSphi.h, WaterTP.cpp, WaterTP.h: First commit of
	  water properties routines. These are under-the-hood routines for
	  calculation of water electrolyte thermochemistry.

2006-07-03 12:59  hkmoffa

	* test_problems/Makefile.in: Added a new test directory.

2006-07-03 12:58  hkmoffa

	* test_problems/negATest/: .cvsignore, Makefile.in, negATest.cpp,
	  negATest_blessed.out, noxNeg.cti, noxNeg.xml, runtest: Added a
	  new test that captures negative A factors.

2006-07-03 12:57  hkmoffa

	* configure, configure.in: Added a new test.

2006-07-03 12:57  hkmoffa

	* Cantera/src/: RateCoeffMgr.h, RxnRates.h: Fix for negative
	  pre-exponential factors producing NaN rates of progress. This bug
	  was reported in the Cantera newsgroup.

	  The fix consists of replacing   Rc = exp ( mlogA + blogT - Ea /
	  RT) with   Rc = A * exp (b logT - Ea/RT)

	  Therefore, the log of A never has to be taken.

	  Note, this also allows for a zero rate of progress for a
	  reaction.

	  Consequences:    The permissible range of the rate constant
	  values may be altered.     Numerical roundoff differences will
	  occur, since the order of	 operations in key rate constant
	  evalulations has been changed.     Speed of the calculation may
	  be affected. I have no idea which way.

	  The fix should be considered as provisional. There are different
	  pathways for fixing this. This is merely the simplest.

2006-07-03 12:41  hkmoffa

	* Cantera/src/importCTML.cpp: Added a couple of comments.

2006-06-23 16:23  hkmoffa

	* Makefile.in: python=minimal fixes on cygwin

2006-06-23 14:04  hkmoffa

	* examples/cxx/: .cvsignore, gri30.xml, kinetics_example1.cpp:
	  Added gri30.xml, so this example will work under the none python
	  option.

2006-06-23 14:01  hkmoffa

	* test_problems/cathermo/Makefile.in: Fixed an error in the clean
	  rule.

2006-06-23 13:35  hkmoffa

	* Cantera/src/: Phase.h, ThermoPhase.h: Doxygen fixes.

2006-06-23 13:33  hkmoffa

	* tools/doc/: .cvsignore, Cantera.cfg.in, doxyinput/cxx-setup.txt,
	  doxyinput/equildemo.txt, doxyinput/thermodemo.txt,
	  doxyinput/winbuild.txt, html/.cvsignore: Additions to doxygen
	  documentation.  Fixes to doxygen docs -> eliminated all of the
	  warnings and ommitted  pages.

2006-06-23 13:31  hkmoffa

	* Cantera/src/thermo/: IdealMolalSoln.cpp, IdealMolalSoln.h,
	  IdealSolidSolnPhase.cpp, IdealSolidSolnPhase.h, MolalityVPSSTP.h:
	  Doxygen formatting changes.

2006-06-23 07:31  dggoodwin

	* Cantera/cxx/demos/combustor.cpp: added C++ combustor example

2006-06-23 07:28  dggoodwin

	* Cantera/python/examples/reactors/combustor.py: added combustor
	  example

2006-06-22 08:10  hkmoffa

	* test_problems/fracCoeff/: .cvsignore, frac.xml: Added frac.xml,
	  since this is now a required file.

2006-06-22 06:47  hkmoffa

	* configure, configure.in: Fixed an error in figuring out what time
	  stamp program, tscompare, works on the current system.

2006-06-22 06:43  hkmoffa

	* test_problems/diamondSurf/: .cvsignore, diamond.xml: Added the
	  diamond.xml file. It's now a prerequisite towards running the
	  problem.

2006-06-20 17:00  hkmoffa

	* examples/cxx/equil_example1.cpp: Replaced silane.cti with
	  silane.xml so that it will work for python none installation.

2006-06-20 16:52  hkmoffa

	* test_problems/cxx_ex/runtest: Commented out CANTERA_DATA
	  statement. On the x86-linux1 cf machine, this was causing the
	  test to crash for some reason.

2006-06-20 16:16  hkmoffa

	* test_problems/cathermo/ims/output_blessed.txt: Took out spurious
	  output from the blessed file.

2006-06-20 16:15  hkmoffa

	* Cantera/src/thermo/IdealMolalSoln.cpp: Took out a spurious print
	  statement.

2006-06-20 16:11  hkmoffa

	* test_problems/fracCoeff/: fracCoeff.cpp, runtest: Made this test
	  work for python=none.

2006-06-20 16:04  hkmoffa

	* configure.in: Added a few directories:    min_python

2006-06-20 16:03  hkmoffa

	* test_problems/: Makefile.in, min_python/.cvsignore,
	  min_python/Makefile.in, min_python/minDiamond/.cvsignore,
	  min_python/minDiamond/Makefile.in,
	  min_python/minDiamond/diamond.cti,
	  min_python/minDiamond/diamond_blessed.xml,
	  min_python/minDiamond/runDiamond.cpp,
	  min_python/minDiamond/runDiamond_blessed.out,
	  min_python/minDiamond/run_diamond.py,
	  min_python/minDiamond/runtest, min_python/minDiamond/tdia_a.py:
	  First cut at getting rid of the false bad test results for the
	  python = none option. min_python dir will include the minimal
	  python installation tests

2006-06-20 15:48  hkmoffa

	* test_problems/diamondSurf/: diamond.cti, runDiamond.cpp, runtest:
	  changed the input file to diamond.xml, so that python="none"
	  installations will pass this test.

2006-06-20 15:36  hkmoffa

	* test_problems/surfkin/surfdemo.cpp: Changed surfdemo.cpp to read
	  gri30.xml.  Thus, this test will pass if python option is set to
	  none.

2006-06-20 14:58  hkmoffa

	* configure.in, preconfig: Changed NUMARRAY_HOME so that it doesn't
	  have a default in preconfig.

	  NUMARRAY_INC_DIR is now constructed from NUMARRAY_HOME in the
	  following prioritized way depending upon the existance of
	  directories:

	      NUMARRAY_INC_DIR=$NUMARRAY_HOME/include/python2.4
	      NUMARRAY_INC_DIR=$NUMARRAY_HOME/include/python2.3
	      NUMARRAY_INC_DIR=$NUMARRAY_HOME/include/python

	  Additionally, NUMARRAY_INC_DIR can now be input directly.
	  NUMARRAY_HOME is only used to set NUMARRAY_INC_DIR.

	  Note, the new method now conforms to what the numarray installer
	  actually does.

2006-06-20 06:56  hkmoffa

	* tools/testtools/csvdiff.cpp: Fixed compilation of this on a linux
	  platform in the compile farm.  Didn't like declarations in a
	  switch statement.

2006-06-19 16:25  hkmoffa

	* tools/doc/: .cvsignore, Cantera.cfg, Cantera.cfg.in, Makefile.in,
	  README, html/.cvsignore: Makde Cantera.cfg a configurable file.
	  Previously there were several hard coded paths in the file.

2006-06-19 16:21  hkmoffa

	* configure.in, preconfig: Added the GRAPHVIZDIR variable to the
	  configure script.  This is used to locate the dot executable,
	  when using doxygen.

2006-06-19 16:19  hkmoffa

	* test_problems/cathermo/Makefile.in: Added a new test, ims.

2006-06-19 16:19  hkmoffa

	* test_problems/cathermo/ims/: .cvsignore, IMSTester.cpp,
	  Makefile.in, WaterPlusSolutes.xml, output_blessed.txt, runtest:
	  Added a new test.

2006-06-19 16:15  hkmoffa

	* Cantera/src/: global.h, misc.cpp: Reduced the number of doxygen
	  error messages.

2006-06-19 16:14  hkmoffa

	* Cantera/src/thermo/: IdealMolalSoln.cpp, IdealMolalSoln.h,
	  Makefile.in, MolalityVPSSTP.cpp, MolalityVPSSTP.h: Added an
	  IdealMolalSoln object.

2006-06-19 07:35  hkmoffa

	* Cantera/cxx/demos/: .cvsignore, Makefile.in: Added a .depends
	  rule

2006-06-13 10:06  hkmoffa

	* Cantera/src/xml.cpp: changed the write_int() routine to produce
	  prettier output.

2006-06-13 10:04  hkmoffa

	* Cantera/src/: ctml.h, ctml.cpp: Added comments to addFloatArray()
	  Corrected comments for procedure getInteger() getFloatArray():
	  Added XML name checking. The default name is still
	  "getFloatArray".	However, now other XML names are
	  acceptable.	   Changed atof() calls to atofCheck()	    Changed
	  the code so that a comma can be the last non-spaced character
	  in the value field.

2006-06-13 09:11  hkmoffa

	* config.h.in, configure.in, preconfig: Added support for
	  conditional use of ideal solid solutions.

2006-06-13 09:09  hkmoffa

	* test_problems/cathermo/issp/: .cvsignore, ISSPTester.cpp,
	  IdealSolidSolnPhaseExample.xml, Makefile.in, output_blessed.txt,
	  runtest: Added a test problem for ideal solid solutions.

2006-06-13 09:07  hkmoffa

	* test_problems/cathermo/: .cvsignore, Makefile.in: Added
	  makefiles.

2006-06-13 09:06  hkmoffa

	* test_problems/Makefile.in: Added a cathermo test directory.

2006-06-13 09:05  hkmoffa

	* Cantera/src/Makefile.in: Added support for conditional
	  compilation of thermo directory.

2006-06-13 09:04  hkmoffa

	* Cantera/src/importCTML.cpp: Changed importPhase to call
	  initThermoXML, not initThermo at the end of its execution.

2006-06-13 09:03  hkmoffa

	* Cantera/src/State.h: Changed a few functions to be virtual, in
	  order to support incompressible equations of state.

2006-06-13 09:02  hkmoffa

	* Cantera/src/thermo/: IdealSolidSolnPhase.cpp,
	  IdealSolidSolnPhase.h, Makefile.in, MolalityVPSSTP.cpp,
	  MolalityVPSSTP.h, VPStandardStateTP.cpp, VPStandardStateTP.h:
	  Added an IdealSolidSolnPhase capability. Changed existing thermo
	  files to use initThermoXML().

2006-06-13 08:26  hkmoffa

	* tools/testtools/csvdiff.cpp: Added an atol and rtol command-line
	  capability. It also does more for comparisons with unequal rows.

2006-06-12 17:57  hkmoffa

	* Cantera/src/InterfaceKinetics.h: Fixed a typo

2006-06-12 17:24  hkmoffa

	* Cantera/src/LatticeSolidPhase.h: Fixed an error mentioned in the
	  Cantera newsgroup.

2006-06-12 17:20  hkmoffa

	* Cantera/src/ThermoPhase.h: Added the function
	  getPartialMolarCp(). It isn't currently in the API, but it should
	  be.

2006-06-12 17:19  hkmoffa

	* Cantera/src/Elements.cpp: Fixed a minor case which resulted in a
	  core dump.

2006-06-11 04:36  dggoodwin

	* Cantera/python/examples/flames/fixed_T_flame.py: minor changes

2006-06-10 10:15  dggoodwin

	* Cantera/python/examples/flames/: tdata.csv, tdata.dat: changed
	  tdata.csv to tdata.dat

2006-06-10 10:07  dggoodwin

	* Cantera/python/examples/flames/: fixed_T_flame.py, tdata.csv:
	  added fixed T flame example

2006-06-08 07:05  hkmoffa

	* Cantera/src/StoichSubstance.h: Fixed a typo and added
	  getStandardVolumes() routine.

2006-05-31 11:06  dggoodwin

	* configure, configure.in, Cantera/python/ctml_writer.py: added
	  LatticePhase to configure.in

2006-05-27 16:34  hkmoffa

	* Cantera/src/SpeciesThermoFactory.cpp: used popError() on two
	  cases where errors are caught and delt with.

2006-05-18 16:18  dggoodwin

	* win32/vc7/zeroD/zeroD.vcproj: added ConstPressureReactor to win32
	  project

2006-05-17 10:43  dggoodwin

	* configure.in, preconfig, ext/f2c_libs/Makefile.in,
	  ext/f2c_libs/arith.h: misc

2006-05-17 08:59  dggoodwin

	* examples/cxx/kinetics_example3.cpp: initial import

2006-05-17 08:16  dggoodwin

	* Cantera/src/zeroD/: ReactorFactory.cpp, ReactorFactory.h: initial
	  import

2006-05-07 14:17  dggoodwin

	* Cantera/clib/src/ctreactor.cpp: added support for const pressure
	  and flow reactors

2006-05-06 08:34  dggoodwin

	* Cantera/: clib/src/ctreactor.cpp, cxx/include/zerodim.h,
	  python/Cantera/Reactor.py, src/CVodesIntegrator.cpp,
	  src/CVodesIntegrator.h, src/FuncEval.h, src/Makefile.in,
	  src/Mu0Poly.h, src/NasaPoly1.h, src/ShomatePoly.h,
	  src/StoichManager.h, src/importCTML.h,
	  src/transport/MixTransport.cpp: support for constant-pressure
	  reactors

2006-05-06 08:32  dggoodwin

	* Cantera/python/examples/reactors/piston.py: initial import

2006-05-06 07:56  dggoodwin

	* Cantera/src/zeroD/: ConstPressureReactor.cpp,
	  ConstPressureReactor.h, FlowReactor.cpp, Reactor.cpp, Reactor.h,
	  ReactorBase.cpp, ReactorBase.h: added constant pressure reactor

2006-05-03 19:13  dggoodwin

	* configure, test_problems/Makefile.in,
	  tools/src/finish_install.py.in: support for Python-free
	  environments

2006-05-03 13:49  dggoodwin

	* Cantera/src/ct2ctml.cpp: Windows has no sleep command

2006-05-03 12:45  dggoodwin

	* Cantera/: clib/src/ct.cpp, clib/src/ct.h,
	  python/src/ctthermo_methods.cpp, python/ctml_writer.py,
	  python/Cantera/Interface.py, python/Cantera/ThermoPhase.py,
	  src/GeneralSpeciesThermo.cpp, src/GeneralSpeciesThermo.h,
	  src/Mu0Poly.cpp, src/NasaThermo.h, src/SpeciesThermo.h,
	  src/SpeciesThermoFactory.cpp, src/SpeciesThermoFactory.h,
	  src/SpeciesThermoInterpType.h, src/State.cpp, src/State.h,
	  src/thermo/MolalityVPSSTP.cpp, src/thermo/VPStandardStateTP.cpp,
	  src/transport/TransportBase.h: added electric potential

2006-05-03 11:12  hkmoffa

	* examples/cxx/equil_example1.cpp: Changed the initial condition
	  slightly. This was to avoid a problem with convergence that
	  occurred in the chemical equilibrium solver.

2006-05-03 11:07  hkmoffa

	* test_problems/cxx_ex/: eq1_blessed.csv, eq1_blessed.dat:
	  Rebaselined the blessed state, due to a small change in initial
	  conditions.

2006-05-03 02:51  dggoodwin

	* configure.in: moved uname -i statement

2006-05-01 16:04  dggoodwin

	* Cantera/matlab/cantera/: @ThermoPhase/setElectricPotential.m,
	  @ThermoPhase/electricPotential.m, importEdge.m: initial import

2006-05-01 16:03  dggoodwin

	* Cantera/matlab/cantera/private/thermomethods.cpp: added functions
	  to set and get the electric potential of a phase

2006-05-01 15:36  hkmoffa

	* configure.in: Added the ext/recipes/Makefile file to the list of
	  makefiles.  Somehow, it wasn't in the list.

2006-05-01 08:51  hkmoffa

	* Makefile.in: Tracked down a bug in the make system to cxxlib.
	  Need to make all at the Cantera/cxx level in order to copy
	  include files over to the build/include directory tree.

2006-04-30 16:43  hkmoffa

	* .cvsignore: Added some config log files to this file.

2006-04-30 16:29  hkmoffa

	* bin/: tscompare, tscompare_alwaystrue, tscompare_csh,
	  tscompare_ksh, tscompare_sh: Added tscompare files.

2006-04-30 16:14  hkmoffa

	* examples/cxx/Makefile.in: Solaris port: added SunWS_cache to
	  clean rule

2006-04-30 16:13  hkmoffa

	* tools/testtools/Makefile.in: Took out extraneous statements.

2006-04-30 16:13  hkmoffa

	* tools/src/Makefile.in: Solaris port commits.

2006-04-30 16:11  hkmoffa

	* ext/f2c_libs/Makefile.in: Solaris changes.

2006-04-30 16:10  hkmoffa

	* Cantera/python/: Makefile.in, ctml_writer.py, setup.py.in:
	  Solaris port changes.

2006-04-30 16:09  hkmoffa

	* bin/install_tsc.in: changed INSTALL to INSTALL_abs

2006-04-30 16:08  hkmoffa

	* .cvsignore: Added files.

2006-04-30 16:07  hkmoffa

	* configure, Cantera.README, Makefile.in, config.h.in,
	  configure.in, preconfig: Solaris Port: the config/configure.in
	  file has been pushed up one directory.		The
	  previous configure file is now called preconfig.

2006-04-30 16:03  hkmoffa

	* config/install-sh: Solaris port: Changing directory structure to
	  put configure.in in top		directory.

2006-04-30 15:33  hkmoffa

	* ext/Makefile.in: Added recipes to clean directories.

2006-04-30 15:32  hkmoffa

	* ext/f2c_lapack/Makefile.in: Took out duplicates.

2006-04-30 15:23  hkmoffa

	* Cantera/: cxx/demos/.cvsignore, fortran/src/.cvsignore: Added
	  SunWS_cache

2006-04-30 15:22  hkmoffa

	* Cantera/clib/src/.cvsignore: Added SuNWS_cache

2006-04-30 15:20  hkmoffa

	* Cantera/cxx/Makefile.in: Fixed an error in INCDIR definition.

2006-04-30 15:17  hkmoffa

	* Cantera/cxx/include/: IdealGasMix.h, PureFluid.h: Made ready() a
	  const function,

2006-04-30 15:15  hkmoffa

	* Cantera/fortran/src/Makefile.in: Solaris: SunWS_cache handling

2006-04-30 15:13  hkmoffa

	* Cantera/cxx/demos/Makefile.in: Solaris changes

2006-04-30 15:10  hkmoffa

	* Cantera/cxx/src/: .cvsignore, Makefile.in: Solaris changes
	  SunWS_cache handling

2006-04-30 15:08  hkmoffa

	* Cantera/src/ct_defs.h: Changed math.h to cmath

2006-04-30 15:08  hkmoffa

	* Cantera/: src/.cvsignore, clib/src/Makefile.in: Added SunWS_cache

2006-04-30 15:07  hkmoffa

	* Cantera/src/CVode.cpp: Added Id line

2006-04-30 15:05  hkmoffa

	* Cantera/src/ct2ctml.cpp: More sleep commands needed for system
	  calls for solaris

2006-04-30 15:03  hkmoffa

	* Cantera/src/stringUtils.cpp: don't need ctypes.h

2006-04-30 15:00  hkmoffa

	* Cantera/src/converters/: Makefile.in, ck2ct.cpp, ck2ct.h: Solaris
	  changes:   use cstdlib not stdlib.h

2006-04-30 14:43  hkmoffa

	* test_problems/: surfkin/.cvsignore, surfkin/Interface.h,
	  surfkin/Makefile.in, silane_equil/.cvsignore,
	  silane_equil/IdealGasMix.h: Solaris changes.

2006-04-30 14:37  hkmoffa

	* test_problems/diamondSurf/run_diamond.py: Fixed typo.

2006-04-30 14:36  hkmoffa

	* test_problems/diamondSurf/: .cvsignore, Makefile.in: Additions
	  for solaris.

2006-04-30 14:20  hkmoffa

	* Cantera/src/Makefile.in: Added the logger.h file.

2006-04-30 13:21  hkmoffa

	* ext/Makefile.in: Uses the build_f2c_lib variable.

2006-04-30 12:58  hkmoffa

	* Cantera/cxx/include/Cantera.h: Added logger.h to this file.

2006-04-30 12:57  hkmoffa

	* Cantera/cxx/include/GRI30.h: Changed the #ifndef line so that it
	  is unique.

2006-04-30 12:56  hkmoffa

	* Cantera/cxx/include/kinetics.h: Added a couple more include
	  kinetics files.

2006-04-30 12:54  hkmoffa

	* Cantera/cxx/include/thermo.h: Changed a comments section.

2006-04-30 12:54  hkmoffa

	* Cantera/cxx/include/PureFluid.h: Added Id field.

2006-04-30 11:08  hkmoffa

	* .cvsignore: Added the file set_cant_env

2006-04-30 11:06  hkmoffa

	* test_problems/: Makefile.in, cxx_ex/Makefile.in,
	  fracCoeff/.cvsignore, fracCoeff/Makefile.in, fracCoeff/frac.cti,
	  fracCoeff/fracCoeff.cpp, fracCoeff/frac_blessed.out,
	  fracCoeff/frac_blessed.xml, fracCoeff/runtest: Added a new test
	  that pretty much mimics the frac python test.  It does add tests
	  for the calculation of equilibrium constants for fractional
	  coefficient reactions.

2006-04-30 11:01  hkmoffa

	* Cantera/src/: EdgeKinetics.cpp, GasKinetics.cpp, GasKinetics.h,
	  InterfaceKinetics.cpp, Kinetics.h, Phase.cpp: Fixed an error in
	  the GasKinetics object that occurred for calculating equilibrium
	  constants for reactions with fractional stoichiometric
	  coefficients. The member data m_dn[] was being calculated
	  incorrectly for theses cases and then used in the calculation of
	  the equilibrium constant. m_dn[] now correctly evaluates the
	  difference in rxn order between the reactants and products for
	  fraction coefficient reactions.

2006-04-29 17:14  dggoodwin

	* Makefile.in, configure, config/configure.in: added capability to
	  build without Python. Features requiring Python in the build
	  process (Python and MATLAB interfaces) are skipped, and Python
	  tests are skipped also.

2006-04-29 03:45  dggoodwin

	* Cantera/src/thermo/: MolalityVPSSTP.cpp, MolalityVPSSTP.h,
	  SingleSpeciesTP.cpp, VPStandardStateTP.cpp, VPStandardStateTP.h:
	  changed from using ctvector to using std::vector. Required
	  replacing v.begin() in many places by &v[0]. Macro DATA_PTR(v)
	  defined for readability.

2006-04-28 10:22  dggoodwin

	* Cantera/cxx/demos/flamespeed.cpp, Cantera/cxx/src/cxxutils.cpp,
	  Cantera/src/Array.h, Cantera/src/BandMatrix.cpp,
	  Cantera/src/CVodesIntegrator.cpp, Cantera/src/ChemEquil.cpp,
	  Cantera/src/ConstDensityThermo.cpp, Cantera/src/DenseMatrix.cpp,
	  Cantera/src/EdgeKinetics.cpp, Cantera/src/EdgeKinetics.h,
	  Cantera/src/GRI_30_Kinetics.cpp, Cantera/src/GRI_30_Kinetics.h,
	  Cantera/src/GasKinetics.cpp, Cantera/src/GasKinetics.h,
	  Cantera/src/Group.h, Cantera/src/IdealGasPhase.cpp,
	  Cantera/src/IdealGasPhase.h, Cantera/src/ImplicitSurfChem.cpp,
	  Cantera/src/InterfaceKinetics.cpp,
	  Cantera/src/InterfaceKinetics.h,
	  Cantera/src/LatticeSolidPhase.cpp, Cantera/src/Makefile.in,
	  Cantera/src/Mu0Poly.cpp, Cantera/src/MultiPhase.cpp,
	  Cantera/src/MultiPhaseEquil.cpp, Cantera/src/NasaPoly2.h,
	  Cantera/src/NasaThermo.h, Cantera/src/Phase.cpp,
	  Cantera/src/ReactionPath.cpp, Cantera/src/ShomatePoly.h,
	  Cantera/src/ShomateThermo.h,
	  Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/State.cpp,
	  Cantera/src/State.h, Cantera/src/StoichSubstance.cpp,
	  Cantera/src/SurfPhase.cpp, Cantera/src/ct_defs.h,
	  Cantera/src/funcs.cpp, Cantera/src/importCTML.cpp,
	  Cantera/src/phasereport.cpp, Cantera/src/utilities.h,
	  Cantera/src/converters/Makefile.in,
	  Cantera/src/converters/ckr_defs.h, Cantera/src/oneD/Domain1D.h,
	  Cantera/src/oneD/MultiJac.cpp, Cantera/src/oneD/MultiNewton.cpp,
	  Cantera/src/oneD/OneDim.cpp, Cantera/src/oneD/Sim1D.cpp,
	  Cantera/src/oneD/Sim1D.h, Cantera/src/oneD/StFlow.cpp,
	  Cantera/src/oneD/boundaries1D.cpp,
	  Cantera/src/transport/DustyGasTransport.cpp,
	  Cantera/src/transport/MMCollisionInt.cpp,
	  Cantera/src/transport/Makefile.in,
	  Cantera/src/transport/MixTransport.cpp,
	  Cantera/src/transport/MultiTransport.cpp,
	  Cantera/src/transport/TransportFactory.cpp,
	  Cantera/src/zeroD/FlowReactor.cpp, Cantera/src/zeroD/Reactor.cpp,
	  Cantera/src/zeroD/ReactorBase.h,
	  Cantera/src/zeroD/ReactorNet.cpp, Cantera/src/zeroD/Wall.cpp,
	  test_problems/surfkin/surfdemo.cpp, Cantera/src/CVode.cpp:
	  changed from using ctvector to using std::vector. Required
	  replacing v.begin() in many places by &v[0]. Macro DATA_PTR(v)
	  defined for readability.

2006-04-27 15:47  hkmoffa

	* Cantera/src/CVode.cpp: Took out 2 print statements, that was
	  causing the diamond test to fail.

2006-04-27 14:39  hkmoffa

	* configure: Changed the environmental variable, WITH_ELECTROLYTES,
	  so that it can be set from a preconfig routine.

2006-04-25 02:52  dggoodwin

	* Cantera/src/Array.h: changed doublereal* to iterator in axpy

2006-04-23 00:27  dggoodwin

	* Cantera/python/Cantera/Edge.py: initial import

2006-04-23 00:24  dggoodwin

	* Cantera/src/oneD/Makefile.in: added missing Domain1D.cpp

2006-04-22 23:41  dggoodwin

	* config/: configure, configure.in: cleaned up configure.in

2006-04-19 13:46  hkmoffa

	* Cantera/python/Makefile.in: Added quotes around some variables.
	  This is necessary if the variables have spaces in them in order
	  for the values to be propagated correctly to the Makefile
	  variables.

2006-04-19 13:44  hkmoffa

	* ext/f2c_libs/Makefile.in: Added a ldemulation arg to the strip
	  command. This is necessary when compiling 32 bit on a 64 bit
	  linux box.

2006-03-07 12:59  hkmoffa

	* Cantera/src/transport/: .cvsignore, MMCollisionInt.h,
	  Makefile.in: Changed the name of some arguments that conflicted
	  with names of member data. This created a warning message on
	  Solaris.

2006-03-07 12:52  hkmoffa

	* Cantera/src/oneD/: .cvsignore, Domain1D.h, Inlet1D.h,
	  Makefile.in, Resid1D.h, Sim1D.cpp, Sim1D.h, StFlow.h:    Solaris
	  sunpro compilers gave a warning about virtual functions in the
	  same class which have the same name, but which have different
	  arguments.	 Solaris complains when virtual functions are
	  hidden, when they are  overloaded.

2006-03-07 12:49  hkmoffa

	* Cantera/src/oneD/boundaries1D.cpp: const needed for proper
	  virtual inheritance

2006-03-07 12:47  hkmoffa

	* Cantera/src/oneD/refine.cpp: Solaris warns about templated static
	  functions.

2006-03-05 16:07  hkmoffa

	* test_problems/python/runtest: Quotation marks are needed on
	  Solaris

2006-03-05 15:55  hkmoffa

	* Cantera/cxx/include/GRI30.h: Changed the defn of a function to
	  agree with underlying virtual function.

2006-03-05 15:52  hkmoffa

	* test_problems/silane_equil/Makefile.in: Added deletion of sun
	  cache directory

2006-03-03 15:21  hkmoffa

	* ext/tpx/: CarbonDioxide.cpp, CarbonDioxide.h, HFC134a.cpp,
	  HFC134a.h, Heptane.cpp, Heptane.h, Hydrogen.cpp, Hydrogen.h,
	  Methane.cpp, Methane.h, Nitrogen.cpp, Nitrogen.h, Oxygen.cpp,
	  Oxygen.h, RedlichKwong.h, Sub.h, Water.cpp, Water.h, lk.cpp,
	  lk.h: solaris warned about string literals being assigned to char
	  *.  So, I changed it so that the species name is storred within
	  the object.

2006-03-03 14:44  hkmoffa

	* ext/: lapack/Makefile.in, recipes/Makefile.in: Took duplicate out
	  of F77FLAGS statement.

2006-03-03 14:43  hkmoffa

	* ext/Makefile.in: Fixed f2c so that it's only compiled when the
	  option is turned on.

2006-03-03 14:04  hkmoffa

	* Cantera/src/converters/.cvsignore: Added a file

2006-03-03 14:02  hkmoffa

	* Cantera/src/ReactionPath.h: An argument hid a member function
	  name. I Changed the argument variable name.

2006-03-03 14:00  hkmoffa

	* Cantera/src/: zeroD/.cvsignore, zeroD/Makefile.in,
	  thermo/.cvsignore, thermo/Makefile.in: Added SunWS_cache deletion

2006-03-03 13:57  hkmoffa

	* Cantera/src/ReactionPath.cpp: An argument conflicted with a
	  member variable. I changed the name of the argument variable.

2006-03-03 13:11  hkmoffa

	* Cantera/src/: PureFluidPhase.cpp, PureFluidPhase.h: Changed the
	  defn of two functions who were missing const declarations.  These
	  were const in Thermophase.h, and for proper inheritance, they
	  need to be the same in derived classes.

2006-03-03 12:39  hkmoffa

	* ext/blas/Makefile.in: Took out duplicate flags

2006-03-03 12:31  hkmoffa

	* ext/math/: Makefile.in, dgbfa.f: Added the file dgbfa.f Took out
	  duplicate FFLAGS statement.

2006-03-03 10:17  hkmoffa

	* tools/src/.cvsignore: Added the SunWS_cache directory.

2006-03-03 10:03  hkmoffa

	* config/: configure, configure.in: This is the start of trying to
	  handle 32 bit vs. 64 bit compilation on select platforms. For
	  example, on linux you can compile 32 bit and 64 bit if the os and
	  hardware can handle 64 bits. In many cases you want to stick to
	  32 bit compilations. One reason is that python may only be set up
	  for 32 bit add-on modules.	 e.g see the SIZEOF_VOID_P defn in
	  pyconfig.h

	  So, I added BITCOMPILE BITHARDWARE, and BITCHANGE variables I
	  also added the variable ldemulationarg, because it's needed in
	  one case for 32 bit compilations on 64 bit linux boxes.

	  Later I will add the default compiler flags that make this 32 bit
	  compilation work. Now they are brought in through a prep script.

2006-03-03 08:44  hkmoffa

	* ext/math/: Makefile.in, dgbefa.f, dgbfa.f: Replaced the file
	  dgbefa.f with dgbfa.f. The later is used in other math routines.

2006-03-03 08:42  hkmoffa

	* config/configure.in: EXTRA_LINK can now come in with a default
	  value. Am using this for the 32 bit compile on a 64 bit linux
	  operating system.

2006-03-03 08:37  hkmoffa

	* test_problems/python/: .cvsignore, README, flame1_blessed.csv,
	  flame1_blessed_linux.csv, frac.py, runtest: Rebaselined the
	  problem.    The number of points changed from 104 to 105 points.
	  However, the	solution stayed just about the same.

2006-03-03 07:33  hkmoffa

	* test_problems/ck2cti_test/: .cvsignore, runtest.in: Added files
	  to the ignore list.

2006-03-03 07:29  hkmoffa

	* test_problems/diamondSurf/: Makefile.in, runDiamond.cpp: Fixed
	  this test so that it can work in the srcdirtree environment.

2006-03-03 07:27  hkmoffa

	* test_problems/cxx_ex/: Makefile.in, gri30.xml, kin1_blessed.csv,
	  silane.xml: Rebaselined the kin1 problem after taking a close
	  look at the results. At one time plane, a couple of the radicals
	  concentrations changed at the ~5.0E-3 level. This seems to be a
	  nontrivial change, however, I this we should let it pass.  I
	  sense this problem could be made more stable if the nonlinear
	  convergence requirements were made a lot stricter, while
	  maintaining the same time step truncation error tolerances.

2006-03-03 07:21  hkmoffa

	* test_problems/silane_equil/: IdealGasMix.h, Makefile.in,
	  output_blessed.txt, silane.xml, silane_equil.cpp: updated the
	  test to ensure that it works from the srcdirtree.

2006-03-03 06:43  hkmoffa

	* test_problems/surfkin/: Interface.h, Makefile.in, surfdemo.cpp:
	  Fixed the program so that it can be run from srcdirtree and
	  install tree

2006-02-24 15:24  hkmoffa

	* Cantera/clib/src/ctonedim.cpp: Fixed a warning message about
	  getting to the end of a int function without a return.

2006-02-24 15:22  hkmoffa

	* Cantera/clib/src/ct.cpp: Fixed a warning message about no return
	  from a double function.

2005-12-18 22:10  dggoodwin

	* Cantera/python/ctml_writer.py: added size attribute to species
	  class

2005-12-15 09:07  dggoodwin

	* Cantera/src/GasKinetics.cpp: added statements to
	  getEquilibriumConstants to force a T update on the next call.
	  Array m_rkcn was being left containing incorrect data. Problem is
	  now fixed.

2005-12-09 09:49  dggoodwin

	* configure, Cantera/clib/src/ct.cpp, Cantera/clib/src/ct.h,
	  Cantera/python/Cantera/ThermoPhase.py,
	  Cantera/python/Cantera/liquidvapor.py,
	  Cantera/src/PureFluidPhase.cpp, Cantera/src/PureFluidPhase.h,
	  Cantera/src/ThermoPhase.h, Cantera/src/phasereport.cpp,
	  Cantera/src/converters/CKParser.cpp: removed critical and
	  saturation properties from ThermoPhase

2005-12-06 19:34  dggoodwin

	* Cantera/python/examples/reactors/sensitivity1.py: initial import

2005-12-06 11:23  dggoodwin

	* config/: configure, configure.in: fixed sundials test

2005-12-05 10:36  dggoodwin

	* Cantera/: matlab/cantera/examples/catcomb.m,
	  python/Cantera/OneD/onedim.py, src/oneD/Domain1D.h,
	  src/oneD/MultiNewton.cpp: minor changes

2005-11-26 08:08  dggoodwin

	* configure, Cantera/clib/src/ctreactor.cpp,
	  Cantera/python/Cantera/Reactor.py,
	  Cantera/src/CVodesIntegrator.cpp,
	  Cantera/src/zeroD/FlowReactor.h, Cantera/src/zeroD/ReactorBase.h,
	  Cantera/src/zeroD/ReactorNet.cpp, Cantera/src/zeroD/ReactorNet.h,
	  config/configure, config/configure.in,
	  tools/templates/f77/demo.mak.in, tools/templates/f90/demo.mak.in:
	  misc minor fixes

2005-11-22 17:19  dggoodwin

	* Cantera/python/Cantera/ThermoPhase.py: fixed error in
	  restoreState

2005-11-22 09:59  dggoodwin

	* Cantera/cxx/demos/kinetics1.cpp, Cantera/src/FalloffFactory.cpp,
	  Cantera/src/FalloffFactory.h, Cantera/src/GasKinetics.cpp,
	  Cantera/src/Integrator.h, Cantera/src/KineticsFactory.cpp,
	  Cantera/src/KineticsFactory.h,
	  Cantera/src/SpeciesThermoFactory.cpp,
	  Cantera/src/SpeciesThermoFactory.h,
	  Cantera/src/SpeciesThermoMgr.h, Cantera/src/State.cpp,
	  Cantera/src/StoichManager.h, Cantera/src/ThermoFactory.cpp,
	  Cantera/src/ThermoFactory.h, Cantera/src/ThirdBodyMgr.h,
	  Cantera/src/misc.cpp, Cantera/src/units.h,
	  Cantera/src/utilities.h, Cantera/src/vec_functions.h,
	  Cantera/src/transport/TransportFactory.cpp,
	  Cantera/src/transport/TransportFactory.h,
	  test_problems/silane_equil/Makefile.in,
	  test_problems/surfkin/Makefile.in, tools/src/Makefile.in,
	  tools/src/ctlibsample.mak.in, tools/src/sample.mak.in,
	  tools/src/sample_f90.mak.in, tools/testtools/Makefile.in: changed
	  some variable names to eliminate leading ddouble (and some
	  single) underscores

2005-11-22 05:23  dggoodwin

	* win32/vc7/cantera/cantera.vcproj: updated

2005-11-18 00:21  dggoodwin

	* ext/tpx/Sub.cpp: added check in set_xy for density == Undef but T
	  != Undef. Failure to check for this condition had resulted in
	  convergence to the wrong root for Hydrogen.

2005-11-14 10:49  hkmoffa

	* Cantera/src/thermo/: Makefile.in, MolalityVPSSTP.cpp,
	  MolalityVPSSTP.h, StoichSubstanceSSTP.h, VPStandardStateTP.cpp,
	  VPStandardStateTP.h: Added a few more files to handle liquid
	  electrochemistry thermo.

2005-11-14 10:47  hkmoffa

	* Cantera/src/: ThermoPhase.h, ThermoPhase.cpp: Added two sets of
	  functions   One, InitThermoFromXML() and InitThermoFromFile()
	  initializes ThermoPhase objects from XML data trees.	 The second
	  set, which is incomplete, works to create a duplication
	  capability for ThermoPhase objects, using the function,
	  duplMyselfAsThermoPhase().

2005-11-14 10:41  hkmoffa

	* Cantera/src/: Phase.cpp, Phase.h: Addec copy constructor and
	  assignment operator.

2005-11-13 03:15  dggoodwin

	* Cantera/src/: CVodesIntegrator.cpp, InterfaceKinetics.cpp,
	  misc.cpp: removed some diagnostic output

2005-11-10 07:06  dggoodwin

	* Cantera/src/: CVode.cpp, CVodesIntegrator.cpp,
	  CVodesIntegrator.h, ChemEquil.cpp, EdgeKinetics.cpp,
	  FalloffMgr.h, Func1.h, FuncEval.h, GRI_30_Kinetics.cpp,
	  ImplicitChem.cpp, ImplicitChem.h, ImplicitSurfChem.cpp,
	  ImplicitSurfChem.h, Integrator.h, Makefile.in, MultiPhase.cpp,
	  NasaPoly1.h, NasaThermo.h, ODE_integrators.cpp, ReactionPath.cpp,
	  ReactionPath.h, SpeciesThermoFactory.cpp, ThermoPhase.cpp,
	  ctvector.h, misc.cpp, transport/SolidTransport.cpp,
	  transport/TransportBase.h: support for sensitivity analysis

2005-11-10 07:02  dggoodwin

	* Cantera/src/zeroD/: FlowReactor.h, FlowReactor.cpp: initial
	  import

2005-10-31 08:29  dggoodwin

	* Cantera/src/SimpleThermo.h: corrected bug that caused problems if
	  this SpeciesThermo manager was used in conjunction with another
	  one (e.g. NASA).

2005-10-31 08:06  hkmoffa

	* Cantera/src/ChemEquil.cpp: Eliminated 2 unused variables.

2005-10-28 21:22  dggoodwin

	* Cantera/matlab/cantera/gaussian.m: initial import

2005-10-28 16:16  hkmoffa

	* Cantera/src/: GeneralSpeciesThermo.cpp,
	  SpeciesThermoInterpType.h, thermo/SingleSpeciesTP.cpp: Added a
	  virtual destructor for SpeciesThermoInterpType.h. Without it,
	  there is a memory leak.

2005-10-24 15:13  hkmoffa

	* Cantera/src/thermo/SingleSpeciesTP.cpp: Forgot the member
	  function getCp_R_ref() in the previous commit.  This commit adds
	  that function.

2005-10-24 14:57  hkmoffa

	* Cantera/cxx/include/thermo.h: Added the new file.

2005-10-24 14:52  hkmoffa

	* Cantera/src/thermo/: Makefile.in, SingleSpeciesTP.cpp,
	  SingleSpeciesTP.h, StoichSubstanceSSTP.cpp,
	  StoichSubstanceSSTP.h: Added an example of SingleSpeciesTP,
	  called StoichSubstanceSSTP, which does the same thing as the
	  StoichSubstance in the previous directory.  Put more
	  functionality in the SingleSpeciesTP level; it now evaluates the
	  reference polynomials.

2005-10-24 14:38  hkmoffa

	* Cantera/src/ThermoPhase.h: Moved the getStandardChemPotentials()
	  routine to the standard state functions member group.

2005-10-24 11:03  hkmoffa

	* Cantera/cxx/include/thermo.h: Added a thermo.h file to the cxx
	  directory. This file is analogous to the transport.h file.

2005-10-24 10:03  hkmoffa

	* Cantera/src/ThermoPhase.h: Moved the getActivities and
	  getActivityCoefficients() functions to the activities member
	  group.

2005-10-24 09:41  dggoodwin

	* Cantera/src/: ODE_integrators.cpp, CVodesIntegrator.h,
	  CVodesIntegrator.cpp: initial import

2005-10-24 08:39  hkmoffa

	* Cantera/src/: State.h, State.cpp: Added the copy constructor and
	  assignment operator.

2005-10-21 17:53  hkmoffa

	* Cantera/src/importCTML.cpp: Generalization of the getStick()
	  routine, to include the case where you have bulk reactants as
	  well as surface reactants and a single gas phase reactant.

2005-10-21 17:35  hkmoffa

	* Cantera/src/MultiPhase.h: Added cvs information to the file.

2005-10-21 17:29  hkmoffa

	* Cantera/src/Makefile.in: Missed a .h file in the last commit.

2005-10-21 17:18  hkmoffa

	* Cantera/src/: ConstCpPoly.cpp, ConstCpPoly.h,
	  GeneralSpeciesThermo.cpp, GeneralSpeciesThermo.h, Makefile.in,
	  Mu0Poly.cpp, Mu0Poly.h, NasaPoly1.h, NasaPoly2.h, NasaThermo.h,
	  ShomatePoly.h, ShomateThermo.h, SimpleThermo.h, SpeciesThermo.h,
	  SpeciesThermoFactory.cpp, SpeciesThermoInterpType.h,
	  SpeciesThermoMgr.h, speciesThermoTypes.h: General commit for a
	  reworking of the Species reference state thermo calculation. This
	  is a reclarification of the reference state thermo calculations
	  for individual species, and an expansion to handle liquid phase
	  thermo needs.

	  There is now a virtual base class for the calculation of
	  reference state thermo functions for	individual species. It is
	  called SpeciesThermoInterpType.

	  There is also a class which allows for a complete general
	  calculation of the reference state species thermo for a phase,
	  GeneralSpeciesThermo.

	  Some of this new functionality may be relegated to ifdef blocks
	  in the future to limit the amount of code for users who don't
	  need the new functionality.

2005-10-21 15:44  hkmoffa

	* Cantera/src/reaction_defs.h: Added cvs info for this file.

2005-10-21 15:41  hkmoffa

	* Cantera/src/IdealGasPhase.h: Fixed an error in the doxygen
	  comments that caused my version of doxygen to segfault. This was
	  caused by member groups not having a closing bracket.

2005-10-21 15:25  hkmoffa

	* Cantera/src/: IdealGasPhase.cpp, IdealGasPhase.h: Filled out 2
	  missing functions to this ThermoPhase object: getIntEnergy_RT()
	  and getIntEnergy_RT_ref().

2005-10-21 15:16  hkmoffa

	* Cantera/src/ThermoPhase.h: Added a detailed doxygen member
	  function description.

2005-10-21 15:15  hkmoffa

	* Cantera/src/StoichSubstance.h: Added more documentation to
	  doxygen.

2005-10-21 14:57  hkmoffa

	* Cantera/src/StoichSubstance.h: Added 3 missing member functions.
	  Note, this class is still not complete; it's missing the ref
	  functions.

2005-10-21 14:42  hkmoffa

	* Cantera/src/Kinetics.h: Changed some comments so that they
	  reflect the correct units.

2005-10-21 14:39  hkmoffa

	* Cantera/src/misc.cpp: Added entries to the errorhandling group in
	  the doxygen documentation.

2005-10-21 14:38  hkmoffa

	* Cantera/src/Constituents.h: Eliminated a doxygen warning message.
	  Also, took out the log file entry.

2005-10-21 14:35  hkmoffa

	* Cantera/src/ctexceptions.h: Just changed the comments. Added an
	  errorhandling group to group together functions and classes
	  dealing with error handling in the doxygen output.

2005-10-21 14:28  hkmoffa

	* Cantera/src/units.h: Added the unit 'gmol' to the list of
	  recognized units.  Added more accuracy to the eV unit.

2005-10-21 11:23  hkmoffa

	* Cantera/src/: Constituents.cpp, Constituents.h: Added a copy
	  constructor and an assignment operator.

2005-10-21 09:18  hkmoffa

	* Cantera/src/: ThermoPhase.cpp, ThermoPhase.h: Added a routine to
	  the ThermoPhase specification: activityConvention().	This has a
	  default value of molar-based. The other option is molality based.

2005-10-21 08:51  hkmoffa

	* .cvsignore: Added the file config.h to this list.  It's a
	  generated file.

2005-10-20 17:57  dggoodwin

	* Cantera/python/examples/gasdynamics/soundSpeeds.py: initial
	  import

2005-10-20 16:33  hkmoffa

	* config.h.in: Added a compilation define when electrolytes are
	  included.

2005-10-20 16:31  hkmoffa

	* config/configure.in: Added support for compiling the src/thermo
	  directory.

2005-10-20 16:30  hkmoffa

	* configure: Added the WITH_ELECTROLYTE keyword into the script.
	  However, I have made the default so that the thermo directory is
	  not compiled.

2005-10-20 16:29  hkmoffa

	* Cantera/src/Makefile.in: Added logic for including the thermo
	  directory into the main compilation step.

2005-10-20 16:27  hkmoffa

	* Cantera/src/thermo/: .cvsignore, Makefile.in,
	  SingleSpeciesTP.cpp, SingleSpeciesTP.h: Added the SingleSpeciesTP
	  file as a trial commit. Want to get the bugs out of adding these
	  files to the main distribution first.

2005-10-04 09:53  hkmoffa

	* Cantera/src/xml.cpp: Commented the _require() routine.

2005-09-29 14:05  hkmoffa

	* ext/tpx/: CarbonDioxide.cpp, Heptane.cpp: Fixed a compilation
	  error on Linux.

2005-09-27 05:12  dggoodwin

	* Cantera/src/Constituents.cpp, Cantera/src/ThermoFactory.cpp,
	  Cantera/src/ct_defs.h, Cantera/src/ctvector.cpp,
	  Cantera/src/recipes.h, configure, Cantera/clib/src/ctonedim.cpp:
	  minor cleanup

2005-09-27 05:08  dggoodwin

	* Cantera/src/Makefile.in: removed reference to recipes.h

2005-09-27 05:08  dggoodwin

	* Cantera/src/stringUtils.cpp: changed stripws to allow spaces in
	  the middle of strings

2005-09-21 20:45  dggoodwin

	* Cantera/python/examples/equilibrium/adiabatic.py: added phi title
	  to output csv file

2005-09-15 21:57  dggoodwin

	* Cantera/python/Cantera/liquidvapor.py,
	  Cantera/python/examples/liquid_vapor/critProperties.py,
	  Cantera/src/BandMatrix.cpp, data/inputs/liquidvapor.cti,
	  tools/src/fixtext.cpp: changes to support the classes for CO2 and
	  heptane in tpx

2005-09-15 21:55  dggoodwin

	* ext/tpx/: CarbonDioxide.cpp, CarbonDioxide.h, Heptane.cpp,
	  Heptane.h, Makefile.in, subs.h, utils.cpp: added files for CO2
	  and heptane contributed by R. Hunt, Stanford

2005-09-15 08:59  dggoodwin

	* win32/vc7/SetupCantera/: SetupCantera.vdproj,
	  SetupCanteraLite.vdproj: does not include static libs

2005-09-14 20:50  dggoodwin

	* Cantera/src/oneD/: Domain1D.cpp, MultiNewton.cpp, StFlow.cpp,
	  StFlow.h, boundaries1D.cpp, oneD_files.cpp: changes to make
	  solution of user-defined BVPs simpler.

2005-09-14 20:47  dggoodwin

	* Cantera/src/oneD/Inlet1D.h: overloaded setupGrid in boundary1D to
	  do nothing. Without this, Domain1D::setupGrid would be called for
	  connector domains.

2005-09-14 20:43  dggoodwin

	* Cantera/python/examples/equilibrium/multiphase_plasma.py: added
	  comment

2005-09-14 20:40  dggoodwin

	* Cantera/python/examples/flames/adiabatic_flame.py: changed error
	  tolerance for time integration. The previous large value of atol
	  was causing problems.

2005-09-13 10:10  dggoodwin

	* Cantera/src/oneD/: Domain1D.cpp, Domain1D.h, Inlet1D.h,
	  Sim1D.cpp, oneD_files.cpp: modifications to simplify solving
	  boundary value problems

2005-09-01 20:41  dggoodwin

	* test_problems/ck2cti_test/: runtest.in, soot.inp,
	  soot_blessed.cti, therm_soot.dat: added test of extensions for
	  large molecules as implemented in the MIT soot mechanism.

2005-08-30 13:28  dggoodwin

	* test_problems/Makefile.in: removed silane_eqil

2005-08-30 13:28  dggoodwin

	* test_problems/python/: frac.cti, frac.py, frac_blessed.out,
	  runtest: modified the frac test

2005-08-29 13:23  dggoodwin

	* win32/vc7/config_h/docopy.cmd: initial import

2005-08-26 09:28  hkmoffa

	* configure: Changed the default back to the case where Cantera
	  will make its own lapack and blas libraries.

2005-08-26 07:59  hkmoffa

	* config/configure.in: Added an ending 'fi'

2005-08-18 20:17  dggoodwin

	* winconfig.h, Cantera/matlab/cantera/buildwin.m,
	  Cantera/matlab/cantera/private/ctmethods.cpp,
	  Cantera/matlab/cantera/private/mllogger.h,
	  Cantera/matlab/cantera/private/write.cpp,
	  Cantera/python/src/pycantera.cpp, Cantera/src/logger.h,
	  Cantera/src/misc.cpp, Cantera/src/oneD/MultiJac.cpp,
	  config/configure.in: corrected minor bugs in windows versions of
	  files

2005-08-18 11:16  dggoodwin

	* configure, Cantera/src/State.cpp, config/configure,
	  config/configure.in, ext/f2c_libs/arith.h: minor cleanup

2005-07-30 14:49  hkmoffa

	* Cantera/src/ctml.cpp: Fixed an error where Cantera would seg
	  fault if errors in the XML file occurred.

2005-07-28 16:02  hkmoffa

	* Cantera/src/converters/CKParser.cpp: Got rid of one warning
	  message.

2005-07-28 16:01  hkmoffa

	* Cantera/src/converters/ck2ct.cpp: Changed the format type of an
	  fprintf statement.

2005-07-28 14:53  hkmoffa

	* Cantera/src/: ctml.cpp, ctml.h: Added the getMatrixValues
	  routine. This routine fills in a matrix of doubles, keyed by a
	  lookup name that determines the two indecises, e.g.:
	  H+:Cl-:3.0E5 This introduces a triplet notation into the Cantera
	  API.	Added a parameter to the getFloatArray() routine, that has
	  a default value -> so it shouldn't cause any changes to the API.

2005-07-28 14:40  hkmoffa

	* Cantera/src/: stringUtils.cpp, stringUtils.h: Added the
	  atofCheck() routine.

2005-07-25 20:56  dggoodwin

	* winconfig.h, Cantera/src/EdgeKinetics.h,
	  Cantera/src/InterfaceKinetics.cpp,
	  Cantera/src/InterfaceKinetics.h, Cantera/src/Kinetics.h,
	  Cantera/src/ReactionStoichMgr.cpp,
	  Cantera/src/ReactionStoichMgr.h, Cantera/src/StoichManager.h,
	  Cantera/src/converters/CKParser.cpp,
	  Cantera/src/converters/Reaction.h,
	  Cantera/src/converters/ck2ct.cpp: cleanup

2005-07-24 20:54  dggoodwin

	* Cantera/src/ReactionStoichMgr.cpp: changed how global reactions
	  are handled

2005-07-24 20:53  dggoodwin

	* Cantera/src/converters/: CKReader.cpp, CKReader.h, ck2ct.cpp:
	  support for fractional stoich coefficients

2005-07-24 20:52  dggoodwin

	* Cantera/src/converters/: Reaction.cpp, Reaction.h: added fwdOrder

2005-07-24 20:51  dggoodwin

	* Cantera/src/converters/CKParser.cpp: now recognizes the FORD
	  keyword

2005-07-23 07:12  dggoodwin

	* test_problems/silane_equil/output_blessed.txt: SI chem potential
	  changed in last digit

2005-07-22 06:33  dggoodwin

	* Cantera/src/ChemEquil.cpp, Cantera/src/GasKinetics.cpp,
	  Cantera/src/GasKinetics.h, configure, ext/f2c_libs/arith.h:
	  cleanup

2005-07-22 05:50  dggoodwin

	* examples/cxx/: Makefile.in, equil_example1.cpp, example_utils.h,
	  examples.cpp, kinetics_example1.cpp, kinetics_example2.cpp,
	  rxnpath_example1.cpp, transport_example1.cpp,
	  transport_example2.cpp: updated

2005-07-22 05:50  dggoodwin

	* Cantera/src/equilibrate.cpp: minor cleanup

2005-07-22 05:36  dggoodwin

	* Cantera/python/setup.py.in: replaced g2c with ctf2c

2005-07-21 21:36  dggoodwin

	* Cantera/src/equil.h: changed default loglevel to 0.

2005-07-21 20:27  dggoodwin

	* Cantera/src/: ChemEquil.cpp, ChemEquil.h, equil.h,
	  equilibrate.cpp, MultiPhase.cpp, MultiPhase.h,
	  MultiPhaseEquil.cpp, MultiPhaseEquil.h: enhanced and cleaned up
	  equilibrium code

2005-07-21 08:00  dggoodwin

	* test_problems/python/.cvsignore: fixed .cvsignore so that
	  frac_blessed.out is not included

2005-07-16 05:19  dggoodwin

	* test_problems/python/frac_blessed.out: removed diagnostic
	  messages

2005-07-14 11:44  dggoodwin

	* Cantera/src/: MultiPhase.cpp, MultiPhase.h, ChemEquil.h:
	  improvements to equilibrate

2005-07-14 11:40  dggoodwin

	* Cantera/src/: importCTML.cpp, importCTML.h: allow tolerance on
	  reaction element balances, rather than requiring precise balance

2005-07-02 11:46  hkmoffa

	* config/configure.in: Fixed an error in the configure.in file,
	  where the F90 interface was requested to be not built, but an
	  attempt to build it is made anyway -> windows cygwin interface.

2005-07-02 11:30  hkmoffa

	* configure: Took out an extraneous line that might be confusing.

2005-06-28 09:00  hkmoffa

	* Cantera/src/MultiPhase.cpp: Fixed a compilation error condition.
	  Commented out the call to init() within updatePhases().

2005-06-27 07:51  dggoodwin

	* Cantera/src/: MultiPhaseEquil.cpp, MultiPhaseEquil.h,
	  MultiPhase.h, MultiPhase.cpp: cleanup

2005-06-25 08:57  dggoodwin

	* Makefile.in, Cantera/clib/src/ctmultiphase.cpp,
	  Cantera/python/examples/.cvsignore,
	  Cantera/python/examples/run_examples.py,
	  Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhaseEquil.cpp,
	  Cantera/src/MultiPhaseEquil.h: cleanup

2005-06-25 06:16  dggoodwin

	* Cantera/python/examples/: catcomb.py, critProperties.py,
	  diamond.py, dustygas.py, flame1.py, flame2.py, function1.py,
	  isentropic.py, mix1.py, mix2.py, npflame1.py, rankine.py,
	  reactor1.py, reactor2.py, rxnpath1.py, rxnpath2.py, stflame1.py,
	  flames/npflame1.py, flames/ohn.cti, gasdynamics/isentropic.py,
	  liquid_vapor/critProperties.py, liquid_vapor/rankine.py,
	  misc/rxnpath1.py, reactors/function1.py, reactors/mix1.py,
	  reactors/mix2.py, reactors/reactor1.py, reactors/reactor2.py,
	  surface_chemistry/catcomb.py, surface_chemistry/diamond.py,
	  transport/dustygas.py: reorganized

2005-06-24 22:27  dggoodwin

	* Cantera/clib/src/ctmultiphase.cpp,
	  Cantera/python/Cantera/OneD/__init__.py,
	  Cantera/python/examples/catcomb.py,
	  Cantera/python/examples/flames/ohn.cti,
	  Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhase.h,
	  Cantera/src/MultiPhaseEquil.cpp, Cantera/src/MultiPhaseEquil.h,
	  Cantera/src/StoichManager.h, Cantera/src/ThermoPhase.h,
	  Cantera/src/oneD/Domain1D.h, Cantera/src/oneD/OneDim.cpp,
	  Cantera/src/oneD/StFlow.cpp, tools/src/package4mac.in,
	  tools/templates/f77/demo.mak.in, tools/templates/f90/demo.mak.in:
	  cleanup

2005-06-24 21:55  dggoodwin

	* win32/vc7/: cantera.sln, SetupCantera/SetupCantera.vdproj,
	  cantera/cantera.vcproj: minor cleanup

2005-06-24 10:43  dggoodwin

	* apps/MixMaster/KineticsFrame.py: changed default to non-browser

2005-06-24 10:04  dggoodwin

	* README.txt: updated

2005-06-23 08:14  hkmoffa

	* config/: configure, configure.in: Took out the version number
	  from the path directories.  Simplified the installation
	  variability in the process by taking out the choice for a
	  distributed installation. Now, everything looks the same under
	  the "Cantera Installation Directory Tree" hood, no matter what
	  version is used.  This should reduce the number of installation
	  problems encountered.

2005-06-23 08:10  hkmoffa

	* Makefile.in: Changed the rm commands to use a common rule. On
	  occasion make was failing because rm didn't have the -r option
	  when it encountered directories.

2005-06-18 11:03  dggoodwin

	* Makefile.in: copy cti files to Python flame demo directory

2005-06-18 11:02  dggoodwin

	* Cantera/python/examples/flames/: free_h2_air.py, ohn.cti: add
	  free H2/air flame example

2005-06-18 10:01  dggoodwin

	* tools/templates/cxx/demo.mak.in: Prerelease_1_6_0_branch merged
	  into trunk

2005-06-18 09:58  dggoodwin

	* .cvsignore, ChangeLog, INSTALLING, Makefile.in, README,
	  config.h.in, configure, winconfig.h, Cantera/Makefile.in,
	  Cantera/clib/src/Cabinet.h, Cantera/clib/src/Makefile.in,
	  Cantera/clib/src/Storage.cpp, Cantera/clib/src/ct.cpp,
	  Cantera/clib/src/ct.h, Cantera/clib/src/ctfunc.cpp,
	  Cantera/clib/src/ctmultiphase.cpp,
	  Cantera/clib/src/ctmultiphase.h, Cantera/clib/src/ctonedim.cpp,
	  Cantera/clib/src/ctonedim.h, Cantera/clib/src/ctreactor.cpp,
	  Cantera/clib/src/ctrpath.cpp, Cantera/clib/src/ctxml.cpp,
	  Cantera/cxx/Makefile.in, Cantera/cxx/demos/Makefile.in,
	  Cantera/cxx/demos/flamespeed.cpp,
	  Cantera/cxx/demos/kinetics1.cpp, Cantera/cxx/demos/rankine.cpp,
	  Cantera/cxx/include/Cantera.h, Cantera/cxx/include/equilibrium.h,
	  Cantera/cxx/include/importPhase.h,
	  Cantera/cxx/include/integrators.h, Cantera/cxx/include/onedim.h,
	  Cantera/cxx/include/transport.h, Cantera/cxx/include/zerodim.h,
	  Cantera/cxx/src/cxxutils.cpp,
	  Cantera/fortran/src/cantera_kinetics.f90,
	  Cantera/fortran/src/cantera_thermo.f90,
	  Cantera/matlab/Makefile.in, Cantera/matlab/setup_matlab.py.in,
	  Cantera/matlab/cantera/buildwin.m,
	  Cantera/matlab/cantera/ck2cti.m,
	  Cantera/matlab/cantera/1D/@Domain1D/Domain1D.m,
	  Cantera/matlab/cantera/1D/@Domain1D/private/domain_methods.m,
	  Cantera/matlab/cantera/@Mixture/Mixture.m,
	  Cantera/matlab/cantera/@Mixture/addPhase.m,
	  Cantera/matlab/cantera/@Mixture/chemPotentials.m,
	  Cantera/matlab/cantera/@Mixture/display.m,
	  Cantera/matlab/cantera/@Mixture/elementIndex.m,
	  Cantera/matlab/cantera/@Mixture/equilibrate.m,
	  Cantera/matlab/cantera/@Mixture/mix_hndl.m,
	  Cantera/matlab/cantera/@Mixture/nElements.m,
	  Cantera/matlab/cantera/@Mixture/nPhases.m,
	  Cantera/matlab/cantera/@Mixture/nSpecies.m,
	  Cantera/matlab/cantera/@Mixture/phaseMoles.m,
	  Cantera/matlab/cantera/@Mixture/pressure.m,
	  Cantera/matlab/cantera/@Mixture/setPhaseMoles.m,
	  Cantera/matlab/cantera/@Mixture/setPressure.m,
	  Cantera/matlab/cantera/@Mixture/setSpeciesMoles.m,
	  Cantera/matlab/cantera/@Mixture/setTemperature.m,
	  Cantera/matlab/cantera/@Mixture/speciesIndex.m,
	  Cantera/matlab/cantera/@Mixture/temperature.m,
	  Cantera/matlab/cantera/@Mixture/private/mixturemethods.m,
	  Cantera/matlab/cantera/@Reactor/mass.m,
	  Cantera/matlab/cantera/@Reactor/setEnergy.m,
	  Cantera/matlab/cantera/@Solution/display.m,
	  Cantera/matlab/cantera/@ThermoPhase/display.m,
	  Cantera/matlab/cantera/@ThermoPhase/equilibrate.m,
	  Cantera/matlab/cantera/@ThermoPhase/name.m,
	  Cantera/matlab/cantera/@ThermoPhase/setName.m,
	  Cantera/matlab/cantera/@ThermoPhase/private/thermo_set.m,
	  Cantera/matlab/cantera/examples/catcomb.m,
	  Cantera/matlab/cantera/examples/flame1.m,
	  Cantera/matlab/cantera/examples/ignite.m,
	  Cantera/matlab/cantera/examples/ignite2.m,
	  Cantera/matlab/cantera/examples/ignite3.m,
	  Cantera/matlab/cantera/examples/ignite_hp.m,
	  Cantera/matlab/cantera/examples/ignite_uv.m,
	  Cantera/matlab/cantera/examples/test_examples.m,
	  Cantera/matlab/cantera/private/ctfunctions.cpp,
	  Cantera/matlab/cantera/private/ctmatutils.h,
	  Cantera/matlab/cantera/private/ctmethods.cpp,
	  Cantera/matlab/cantera/private/mixturemethods.cpp,
	  Cantera/matlab/cantera/private/onedimmethods.cpp,
	  Cantera/matlab/cantera/private/phasemethods.cpp,
	  Cantera/matlab/cantera/private/thermomethods.cpp,
	  Cantera/matlab/cantera/private/write.cpp,
	  Cantera/matlab/cantera/tutorial/tut1.m,
	  Cantera/matlab/cantera/tutorial/tut4.m,
	  Cantera/python/Makefile.in, Cantera/python/ctml_writer.py,
	  Cantera/python/setup.py.in, Cantera/python/winsetup.py,
	  Cantera/python/Cantera/Kinetics.py,
	  Cantera/python/Cantera/Phase.py,
	  Cantera/python/Cantera/ThermoPhase.py,
	  Cantera/python/Cantera/__init__.py,
	  Cantera/python/Cantera/ck2cti.py,
	  Cantera/python/Cantera/constants.py,
	  Cantera/python/Cantera/mixture.py, Cantera/python/Cantera/num.py,
	  Cantera/python/Cantera/OneD/BurnerFlame.py,
	  Cantera/python/Cantera/OneD/FreeFlame.py,
	  Cantera/python/Cantera/OneD/onedim.py,
	  Cantera/python/examples/flame1.py,
	  Cantera/python/examples/equilibrium/KOH.cti,
	  Cantera/python/examples/equilibrium/adiabatic.py,
	  Cantera/python/examples/equilibrium/multiphase_plasma.py,
	  Cantera/python/examples/equilibrium/plotting.py,
	  Cantera/python/examples/equilibrium/simple.py,
	  Cantera/python/examples/equilibrium/stoich.py,
	  Cantera/python/examples/flames/adiabatic_flame.py,
	  Cantera/python/examples/flames/flame1.py,
	  Cantera/python/examples/flames/flame2.py,
	  Cantera/python/examples/flames/stflame1.py,
	  Cantera/python/examples/kinetics/ratecoeffs.py,
	  Cantera/python/src/cantera.def, Cantera/python/src/ct.def,
	  Cantera/python/src/ctflow.def, Cantera/python/src/ctfuncs.cpp,
	  Cantera/python/src/ctkinetics.def,
	  Cantera/python/src/ctmultiphase_methods.cpp,
	  Cantera/python/src/ctnumerics.def,
	  Cantera/python/src/ctonedim_methods.cpp,
	  Cantera/python/src/ctphase.def,
	  Cantera/python/src/ctphase_methods.cpp,
	  Cantera/python/src/ctsurf.def, Cantera/python/src/ctthermo.def,
	  Cantera/python/src/ctthermo_methods.cpp,
	  Cantera/python/src/cttransport.def, Cantera/python/src/methods.h,
	  Cantera/python/src/pycantera.cpp, Cantera/python/src/pylogger.h,
	  Cantera/python/src/pyutils.h, Cantera/src/.cvsignore,
	  Cantera/src/Array.h, Cantera/src/ArrayViewer.h,
	  Cantera/src/BandMatrix.h, Cantera/src/ChemEquil.cpp,
	  Cantera/src/ChemEquil.h, Cantera/src/ConstDensityThermo.cpp,
	  Cantera/src/ConstDensityThermo.h, Cantera/src/Constituents.cpp,
	  Cantera/src/Constituents.h, Cantera/src/Elements.cpp,
	  Cantera/src/Elements.h, Cantera/src/GRI_30_Kinetics.cpp,
	  Cantera/src/GasKinetics.cpp, Cantera/src/GasKinetics.h,
	  Cantera/src/IdealGasPhase.cpp, Cantera/src/IdealGasPhase.h,
	  Cantera/src/ImplicitSurfChem.cpp,
	  Cantera/src/InterfaceKinetics.cpp,
	  Cantera/src/InterfaceKinetics.h, Cantera/src/Kinetics.cpp,
	  Cantera/src/Kinetics.h, Cantera/src/KineticsFactory.cpp,
	  Cantera/src/LatticeSolidPhase.cpp,
	  Cantera/src/LatticeSolidPhase.h, Cantera/src/Makefile.in,
	  Cantera/src/MetalPhase.h, Cantera/src/MultiPhase.cpp,
	  Cantera/src/MultiPhase.h, Cantera/src/MultiPhaseEquil.cpp,
	  Cantera/src/MultiPhaseEquil.h, Cantera/src/Phase.cpp,
	  Cantera/src/Phase.h, Cantera/src/RateCoeffMgr.h,
	  Cantera/src/ReactionData.h, Cantera/src/ReactionStoichMgr.cpp,
	  Cantera/src/ReactionStoichMgr.h, Cantera/src/RxnRates.h,
	  Cantera/src/SpeciesThermoFactory.cpp, Cantera/src/State.h,
	  Cantera/src/StoichManager.h, Cantera/src/StoichSubstance.cpp,
	  Cantera/src/StoichSubstance.h, Cantera/src/SurfPhase.h,
	  Cantera/src/ThermoFactory.cpp, Cantera/src/ThermoPhase.cpp,
	  Cantera/src/ThermoPhase.h, Cantera/src/config.h,
	  Cantera/src/ct2ctml.cpp, Cantera/src/ct_defs.h,
	  Cantera/src/ctexceptions.h, Cantera/src/ctml.cpp,
	  Cantera/src/ctvector.cpp, Cantera/src/global.h,
	  Cantera/src/importCTML.cpp, Cantera/src/logger.h,
	  Cantera/src/misc.cpp, Cantera/src/mix_defs.h,
	  Cantera/src/phasereport.cpp, Cantera/src/reaction_defs.h,
	  Cantera/src/units.h, Cantera/src/utilities.h,
	  Cantera/src/converters/Makefile.in,
	  Cantera/src/converters/ck2ct.cpp, Cantera/src/converters/ck2ct.h,
	  Cantera/src/oneD/Domain1D.h, Cantera/src/oneD/Inlet1D.h,
	  Cantera/src/oneD/Makefile.in, Cantera/src/oneD/OneDim.cpp,
	  Cantera/src/oneD/StFlow.cpp, Cantera/src/oneD/StFlow.h,
	  Cantera/src/oneD/boundaries1D.cpp,
	  Cantera/src/transport/Makefile.in,
	  Cantera/src/transport/MultiTransport.cpp,
	  Cantera/src/transport/SolidTransport.cpp,
	  Cantera/src/transport/TransportFactory.cpp,
	  Cantera/src/zeroD/FlowDevice.cpp, Cantera/src/zeroD/FlowDevice.h,
	  Cantera/src/zeroD/Makefile.in,
	  Cantera/src/zeroD/PID_Controller.h,
	  Cantera/src/zeroD/Reactor.cpp, Cantera/src/zeroD/Reactor.h,
	  Cantera/src/zeroD/ReactorBase.cpp,
	  Cantera/src/zeroD/ReactorBase.h,
	  Cantera/src/zeroD/ReactorNet.cpp, Cantera/src/zeroD/ReactorNet.h,
	  Cantera/src/zeroD/Reservoir.h, Cantera/src/zeroD/Wall.cpp,
	  Cantera/src/zeroD/Wall.h, Cantera/src/zeroD/flowControllers.h,
	  apps/MixMaster/KineticsFrame.py, apps/MixMaster/Mix.py,
	  apps/MixMaster/ThermoFrame.py, apps/MixMaster/ThermoProp.py,
	  config/configure, config/configure.in, data/inputs/elements.xml,
	  data/inputs/nasa.cti, data/inputs/nasa_condensed.cti,
	  data/inputs/nasa_gas.cti, examples/cxx/Makefile.in,
	  examples/cxx/equil_example1.cpp, examples/cxx/examples.cpp,
	  examples/cxx/kinetics_example1.cpp, ext/Makefile.in,
	  ext/blas/Makefile.in, ext/cvode/Makefile.in,
	  ext/f2c_blas/Makefile.in, ext/f2c_lapack/Makefile.in,
	  ext/f2c_libs/Makefile.in, ext/f2c_libs/arith.h,
	  ext/f2c_math/.cvsignore, ext/f2c_math/Makefile.in,
	  ext/f2c_math/fdump.c, ext/f2c_recipes/Makefile.in,
	  ext/lapack/Makefile.in, ext/math/Makefile.in,
	  ext/recipes/Makefile.in, ext/tpx/.depends, ext/tpx/Makefile.in,
	  test_problems/ck2cti_test/gri30a_blessed.cti,
	  test_problems/ck2cti_test/runtest.in,
	  test_problems/diamondSurf/Makefile.in,
	  test_problems/diamondSurf/diamond_blessed.xml,
	  test_problems/diamondSurf/runDiamond.cpp,
	  test_problems/python/flame1_blessed.csv,
	  test_problems/python/flame1_blessed_linux.csv,
	  test_problems/python/frac.cti, test_problems/python/frac.py,
	  test_problems/python/frac_blessed.out,
	  test_problems/python/runtest,
	  test_problems/silane_equil/Makefile.in,
	  test_problems/silane_equil/output_blessed.txt,
	  test_problems/silane_equil/silane_equil.cpp,
	  test_problems/surfkin/Makefile.in, tools/doc/Cantera.cfg,
	  tools/doc/footer.html, tools/doc/header.html,
	  tools/doc/doxyinput/Cantera.txt, tools/doc/doxyinput/build.txt,
	  tools/doc/doxyinput/ctnew.txt,
	  tools/doc/doxyinput/cxx-headers.txt,
	  tools/doc/doxyinput/demo.cpp, tools/doc/doxyinput/demo1.cpp,
	  tools/doc/doxyinput/demo1a.cpp,
	  tools/doc/doxyinput/demoequil.cpp,
	  tools/doc/doxyinput/equildemo.txt, tools/doc/doxyinput/ex1.cpp,
	  tools/doc/doxyinput/except.cpp,
	  tools/doc/doxyinput/exceptions.txt,
	  tools/doc/doxyinput/introcxx.txt,
	  tools/doc/doxyinput/languages.txt,
	  tools/doc/doxyinput/thermo.txt,
	  tools/doc/doxyinput/thermodemo.cpp,
	  tools/doc/doxyinput/thermodemo.txt, tools/src/Makefile.in,
	  tools/src/ck2cti.cpp, tools/src/findtag.py,
	  tools/src/finish_install.py.in, tools/src/fixtext.cpp,
	  tools/src/package4mac.in: Prerelease_1_6_0_branch merged into
	  trunk

2005-06-17 20:18  dggoodwin

	* Cantera/python/Cantera/OneD/FreeFlame.py: initial import

2005-06-16 22:49  dggoodwin

	* Cantera/matlab/cantera/@Mixture/: Mixture.m, chemPotentials.m,
	  display.m, elementIndex.m, equilibrate.m, mix_hndl.m,
	  nElements.m, nSpecies.m, phaseMoles.m, pressure.m,
	  setPhaseMoles.m, setPressure.m, setSpeciesMoles.m,
	  setTemperature.m, speciesIndex.m, temperature.m: initial import

2005-06-16 22:46  dggoodwin

	* Cantera/python/examples/flames/adiabatic_flame.py: initial import

2005-06-16 15:59  dggoodwin

	* Cantera/matlab/cantera/@Solution/display.m: use display method
	  inherited from ThermoPhase

2005-06-15 20:08  dggoodwin

	* Makefile.in, Cantera/matlab/cantera/examples/prandtl1.m,
	  Cantera/python/setup.py.in, Cantera/src/ChemEquil.cpp,
	  Cantera/src/MultiPhaseEquil.cpp: changes to make ChemEquil more
	  stable

2005-06-09 15:27  dggoodwin

	* configure, Cantera/cxx/demos/Makefile.in,
	  examples/cxx/Makefile.in, examples/cxx/equil_example1.cpp,
	  test_problems/silane_equil/Makefile.in,
	  test_problems/surfkin/Makefile.in: minor cleanup

2005-06-08 15:36  dggoodwin

	* configure, Cantera/matlab/setup_matlab.py.in,
	  Cantera/python/setup.py.in, Cantera/src/oneD/StFlow.cpp,
	  Cantera/src/oneD/StFlow.h, Cantera/src/oneD/boundaries1D.cpp,
	  config/configure, config/configure.in,
	  tools/templates/cxx/demo.mak.in: support for the Accelerate
	  framework on the Mac

2005-06-07 22:29  dggoodwin

	* Cantera/python/examples/equilibrium/: KOH.cti, adiabatic.py,
	  multiphase_plasma.py, simple.py, stoich.py: initial import

2005-06-07 20:54  dggoodwin

	* test_problems/python/flame1_blessed_linux.csv: updated blessed
	  file

2005-06-07 19:43  dggoodwin

	* Cantera/matlab/cantera/private/mixturemethods.cpp: support for
	  multiphase mixtures

2005-06-06 07:28  hkmoffa

	* Cantera/src/transport/TransportFactory.cpp: Added comments.

2005-05-22 14:07  dggoodwin

	* test_problems/python/: frac.cti, frac.py, frac_blessed.out,
	  runtest: fractional stoichiometric coefficient test

2005-05-22 13:38  dggoodwin

	* Cantera/src/GasKinetics.cpp, Cantera/src/GasKinetics.h,
	  Cantera/src/ReactionStoichMgr.cpp,
	  Cantera/src/SpeciesThermoFactory.cpp,
	  Cantera/src/StoichManager.h, Cantera/src/ct2ctml.cpp,
	  Cantera/src/mix_defs.h, configure, Cantera/clib/src/ct.cpp,
	  Cantera/clib/src/ct.h, Cantera/clib/src/ctmultiphase.cpp,
	  Cantera/clib/src/ctmultiphase.h,
	  Cantera/fortran/src/cantera_kinetics.f90,
	  Cantera/fortran/src/cantera_thermo.f90,
	  Cantera/matlab/Makefile.in, Cantera/matlab/setup_matlab.py.in,
	  Cantera/matlab/cantera/@ThermoPhase/name.m,
	  Cantera/matlab/cantera/private/ctmethods.cpp,
	  Cantera/matlab/cantera/private/phasemethods.cpp,
	  Cantera/matlab/cantera/private/thermomethods.cpp,
	  Cantera/matlab/cantera/private/write.cpp,
	  Cantera/python/Cantera/Kinetics.py,
	  Cantera/python/Cantera/Mixture.py,
	  Cantera/python/Cantera/ThermoPhase.py,
	  Cantera/python/Cantera/mixture.py,
	  Cantera/python/src/ctthermo_methods.cpp,
	  tools/doc/doxyinput/Cantera.txt, tools/doc/doxyinput/ctnew.txt,
	  tools/doc/doxyinput/demo1a.cpp, tools/doc/doxyinput/introcxx.txt:
	  support for fractional stoichiometric coefficients

2005-05-19 15:15  hkmoffa

	* Cantera/src/units.h: Added in more units:   nm
	  nanometers   Angstrom   Angstroms Activation Energy Units:
	  Kelvin	  (GasConstant)   Dimensionless   (273.15 *
	  GasConstant)

	      -> specification of dimensionless gibbs free energies is
	  common
		 in electrochemistry. However, you have to multiply by the
		 current temperature to convert correctly here.

2005-05-01 06:58  dggoodwin

	* Cantera/src/: Array.h, ArrayViewer.h, BandMatrix.h, ChemEquil.h,
	  Kinetics.h, MultiPhase.cpp, MultiPhase.h, MultiPhaseEquil.cpp,
	  MultiPhaseEquil.h, ReactionData.h, ReactionStoichMgr.cpp,
	  ReactionStoichMgr.h, StoichManager.h, ct_defs.h, ctml.cpp,
	  global.h, importCTML.cpp, phasereport.cpp: added support for
	  non-integral product stoichiometric coefficients

2005-04-23 10:14  dggoodwin

	* Cantera/matlab/cantera/@Mixture/: Mixture.m, addPhase.m,
	  mix_hndl.m, nPhases.m, private/mixturemethods.m: initial import

2005-04-23 10:12  dggoodwin

	* Cantera/matlab/cantera/@ThermoPhase/: equilibrate.m, name.m,
	  setName.m, private/thermo_set.m: added name and setName methods

2005-04-22 19:42  dggoodwin

	* Cantera/matlab/cantera/examples/: ignite.m, ignite2.m, ignite3.m,
	  ignite_hp.m, ignite_uv.m: corrected plot labels to be mass,
	  rather than mole, fractions

2005-04-17 08:48  hkmoffa

	* Cantera/src/global.h: Added cvs id information.

2005-04-15 12:47  hkmoffa

	* ext/Makefile.in: Changed the Makefile to always make f2c_libs.
	  Applications may have use of this even if Cantera doesn't
	  actually use f2c.

2005-04-15 12:01  hkmoffa

	* Cantera/cxx/demos/kinetics1.cpp: Added in the cantera/Cantera.h
	  include file. It seemed to need it to compile in the demo
	  directory of the install directory.

2005-04-13 04:17  dggoodwin

	* Cantera/python/examples/: equilibrium/adiabatic.py,
	  equilibrium/plotting.py, flames/flame1.py, flames/flame2.py,
	  flames/stflame1.py, kinetics/ratecoeffs.py: updated examples

2005-04-06 17:03  dggoodwin

	* Cantera/matlab/cantera/buildwin.m,
	  win32/vc7/SetupCantera/SetupCantera.vdproj: minor changes to
	  SetupCantera

2005-04-01 20:37  dggoodwin

	* Cantera/python/Cantera/constants.py: changed GasConstant to 1999
	  CODATA value

2005-04-01 15:21  dggoodwin

	* CVSROOT/commitinfo: enabled cvs_acls

2005-04-01 15:19  dggoodwin

	* CVSROOT/: avail, checkoutlist: added avail

2005-04-01 06:29  dggoodwin

	* tools/doc/: Cantera.cfg, doxyinput/Cantera.txt,
	  doxyinput/build.txt, doxyinput/ctnew.txt,
	  doxyinput/cxx-headers.txt, doxyinput/demo.cpp,
	  doxyinput/demo1.cpp, doxyinput/demo1a.cpp,
	  doxyinput/demoequil.cpp, doxyinput/equildemo.txt,
	  doxyinput/ex1.cpp, doxyinput/except.cpp,
	  doxyinput/exceptions.txt, doxyinput/introcxx.txt,
	  doxyinput/languages.txt, doxyinput/thermo.txt,
	  doxyinput/thermodemo.cpp, doxyinput/thermodemo.txt: new doxygen
	  files

2005-03-31 17:10  dggoodwin

	* Cantera/src/: IdealGasPhase.h, State.h, ThermoPhase.h, misc.cpp,
	  utilities.h: updated comments

2005-03-30 09:33  hkmoffa

	* Cantera/src/ThermoPhase.h: Fixed a comment section that
	  incorrectly identified a function as returning a Gibbs energy
	  when it actually returned a Heat capacity.

2005-03-30 08:03  hkmoffa

	* Makefile.in: Took residual particle Makefile stuff out of this
	  file.

2005-03-30 08:02  hkmoffa

	* Cantera/Makefile.in: Took residual particle configure stuff out
	  of this file.

2005-03-30 08:00  hkmoffa

	* config/configure.in: Took residual particle stuff out of this
	  file.

2005-03-23 12:54  hkmoffa

	* Cantera/src/.cvsignore: Added *.d

2005-03-09 12:48  dggoodwin

	* Cantera/python/ctml_writer.py: added support for fractional
	  product stoichiometric coefficients in global irreversible
	  reactions

2005-03-05 07:43  dggoodwin

	* Cantera/src/: LatticeSolidPhase.h, LatticeSolidPhase.cpp: initial
	  import

2005-02-25 04:48  dggoodwin

	* Makefile.in, config/configure, config/configure.in: g95 changes

2005-02-24 19:52  dggoodwin

	* Makefile.in, Cantera/python/setup.py.in, config/configure,
	  config/configure.in, tools/src/finish_install.py.in: minor
	  cleanup

2005-02-24 11:01  dggoodwin

	* Cantera/src/converters/ck2ct.cpp: minor cleanup

2005-02-24 11:01  dggoodwin

	* Cantera/src/config.h: added check for CANTERA_APP

2005-02-24 11:01  dggoodwin

	* Cantera/cxx/include/Cantera.h: added definition of CANTERA_APP,
	  which is used in Cantera/src/config.h to control where to find
	  the config file

2005-02-24 10:59  dggoodwin

	* test_problems/: diamondSurf/runDiamond.cpp,
	  silane_equil/silane_equil.cpp: added #include for file Cantera.h

2005-02-24 10:59  dggoodwin

	* test_problems/silane_equil/output_blessed.txt: changed output
	  format

2005-02-24 08:54  dggoodwin

	* tools/src/findtag.py: initial import

2005-02-22 21:27  dggoodwin

	* CVSROOT/loginfo: added syncmail

2005-02-17 09:35  dggoodwin

	* apps/MixMaster/: Mix.py, ThermoFrame.py, ThermoProp.py: minor
	  changes

2005-02-17 08:25  dggoodwin

	* apps/MixMaster/KineticsFrame.py: added scrollbar to reaction
	  window

2005-02-16 22:12  dggoodwin

	* apps/MixMaster/KineticsFrame.py: changed default reaction path
	  diagram format to SVG

2005-02-10 00:15  dggoodwin

	* Cantera/src/Makefile.in: minor win32 bug fixes

2005-02-10 00:10  dggoodwin

	* Cantera/clib/src/ct.h, Cantera/matlab/cantera/buildwin.m,
	  Cantera/matlab/cantera/private/ctmethods.cpp,
	  Cantera/python/src/pycantera.cpp, Cantera/src/MultiPhase.cpp,
	  Cantera/src/config.h, Cantera/src/converters/ck2ct.cpp,
	  win32/vc7/cantera.sln, win32/vc7/cantera/cantera.vcproj,
	  win32/vc7/tpx/tpx.vcproj: minor win32 bug fixes

2005-02-09 02:26  dggoodwin

	* Makefile.in, configure, Cantera/clib/src/ct.cpp,
	  Cantera/clib/src/ct.h, Cantera/python/Cantera/Mixture.py,
	  Cantera/python/Cantera/__init__.py,
	  Cantera/python/Cantera/mixture.py,
	  Cantera/python/examples/equilibrium/adiabatic.py,
	  Cantera/python/examples/equilibrium/plotting.py,
	  Cantera/python/src/ctfuncs.cpp,
	  Cantera/python/src/ctthermo_methods.cpp,
	  Cantera/python/src/methods.h, Cantera/python/src/pycantera.cpp,
	  Cantera/python/src/pyutils.h, tools/src/package4mac.in: support
	  for HTML log files.

2005-02-09 02:23  dggoodwin

	* Cantera/src/: MultiPhase.cpp, MultiPhaseEquil.cpp, misc.cpp:
	  support for HTML log files.

2005-02-08 08:52  dggoodwin

	* config/: configure, configure.in: corrected error in g95 options

2005-02-03 13:44  dggoodwin

	* Cantera/python/examples/equilibrium/adiabatic.py: initial import

2005-02-02 12:07  dggoodwin

	* test_problems/ck2cti_test/runtest.in: minor output format change

2005-02-02 11:59  dggoodwin

	* test_problems/ck2cti_test/gri30a_blessed.cti: minor output format
	  change

2005-02-02 11:37  dggoodwin

	* Cantera/src/config.h: not needed in repository

2005-02-02 11:10  dggoodwin

	* Cantera/: clib/src/Cabinet.h, clib/src/ctfunc.cpp,
	  clib/src/ctmultiphase.cpp, clib/src/ctonedim.cpp,
	  clib/src/ctreactor.cpp, clib/src/ctrpath.cpp, clib/src/ctxml.cpp,
	  src/config.h: added template<>

2005-02-01 15:27  dggoodwin

	* Cantera/python/: Makefile.in, Cantera/Phase.py, Cantera/num.py,
	  src/pycantera.cpp: changed numarray/Numeric selection to avoid
	  importing the wrong module

2005-02-01 07:22  dggoodwin

	* Cantera/python/src/: cantera.def, ct.def, ctflow.def,
	  ctkinetics.def, ctnumerics.def, ctphase.def, ctphase_methods.cpp,
	  ctsurf.def, ctthermo.def, cttransport.def: removed unused files

2005-01-31 10:54  dggoodwin

	* Cantera/matlab/: Makefile.in, cantera/ck2cti.m,
	  cantera/private/ctfunctions.cpp: added support for ck2cti without
	  requiring external program

2005-01-31 04:20  dggoodwin

	* Cantera/python/Cantera/ck2cti.py: initial import

2005-01-31 04:18  dggoodwin

	* Cantera/: clib/src/ct.cpp, clib/src/ct.h,
	  clib/src/ctmultiphase.cpp, clib/src/ctmultiphase.h,
	  python/Makefile.in, python/setup.py.in,
	  python/Cantera/Mixture.py, python/Cantera/mixture.py,
	  python/src/ctfuncs.cpp, python/src/ctmultiphase_methods.cpp,
	  python/src/methods.h: added function ck2cti

2005-01-31 04:18  dggoodwin

	* Cantera/src/converters/ck2ct.cpp: printf and stream i/o changed
	  to fprintf to allow writing cti file to a file rather than to the
	  standard output

2005-01-31 04:16  dggoodwin

	* Cantera/src/phasereport.cpp: only print mu for non-zero species

2005-01-28 18:57  dggoodwin

	* Cantera/clib/src/: Storage.cpp, ct.cpp: corrected a problem with
	  phases with identical names

2005-01-28 18:46  dggoodwin

	* Cantera/python/Cantera/Kinetics.py: corrected a problem with
	  phases with identical names

2005-01-24 19:48  dggoodwin

	* ext/: f2c_lapack/Makefile.in, f2c_math/.cvsignore: added files to
	  .cvsignore

2005-01-24 19:41  dggoodwin

	* ChangeLog, Makefile.in, configure, Cantera/cxx/demos/Makefile.in,
	  Cantera/cxx/demos/demos.cpp, Cantera/cxx/demos/flamespeed.cpp,
	  Cantera/cxx/demos/kin1_blessed.csv,
	  Cantera/cxx/demos/kin1_blessed.dat,
	  Cantera/cxx/demos/kinetics1.cpp, Cantera/cxx/demos/rankine.cpp,
	  Cantera/python/Cantera/liquidvapor.py, Cantera/src/config.h,
	  Cantera/src/misc.cpp, Cantera/src/phasereport.cpp,
	  bin/mixmaster.py, config/configure, config/configure.in,
	  data/inputs/liquidvapor.cti, ext/tpx/.depends,
	  ext/tpx/HFC134a.cpp, ext/tpx/HFC134a.h, ext/tpx/Makefile.in,
	  ext/tpx/subs.h, ext/tpx/utils.cpp, tools/bin/erase: fixed problem
	  with dependencies for ck2cti

2005-01-24 19:38  dggoodwin

	* tools/src/ck2cti.cpp, Cantera/src/converters/ck2ct.cpp,
	  Cantera/src/converters/ck2ct.h: added validate option

2005-01-24 07:06  dggoodwin

	* Makefile.in, configure, Cantera/cxx/demos/Makefile.in,
	  Cantera/cxx/demos/demos.cpp, Cantera/cxx/demos/flamespeed.cpp,
	  Cantera/cxx/demos/kinetics1.cpp, Cantera/cxx/demos/rankine.cpp,
	  Cantera/src/config.h, Cantera/src/misc.cpp, ext/tpx/.depends,
	  ext/tpx/utils.cpp, tools/bin/erase: changed C++ demos

2005-01-24 03:32  dggoodwin

	* Cantera/cxx/demos/: Makefile.in, demos.cpp, flamespeed.cpp,
	  kin1_blessed.csv, kin1_blessed.dat, kinetics1.cpp, rankine.cpp:
	  added program demo to run all demos

2005-01-22 04:48  dggoodwin

	* win32/vc7/: SetupCantera/SetupCantera.vdproj,
	  cantera/cantera.vcproj, ck2cti/ck2cti.vcproj,
	  converters/converters.vcproj, ctmatlab/ctmatlab.vcproj,
	  ctpython/ctpython.vcproj, cvode/cvode.vcproj,
	  cxxutils/cxxutils.vcproj, f2c_blas/f2c_blas.vcproj,
	  f2c_lapack/f2c_lapack.vcproj, f2c_libs/f2c_libs.vcproj,
	  f2c_math/f2c_math.vcproj, f2c_recipes/f2c_recipes.vcproj,
	  oneD/oneD.vcproj, tpx/tpx.vcproj, transport/transport.vcproj,
	  zeroD/zeroD.vcproj: added hfc134a to Cantera

2005-01-19 13:22  dggoodwin

	* data/inputs/: nasa.cti, nasa_condensed.cti, nasa_gas.cti:
	  separated gaseous and condensed-phase species

2005-01-18 06:36  dggoodwin

	* ext/tpx/HFC134a.h: fixed include error

2005-01-14 05:41  dggoodwin

	* configure, Cantera/python/Cantera/liquidvapor.py,
	  Cantera/src/phasereport.cpp, bin/mixmaster.py,
	  data/inputs/liquidvapor.cti, ext/f2c_libs/arith.h,
	  ext/tpx/HFC134a.cpp, ext/tpx/HFC134a.h, ext/tpx/Makefile.in,
	  ext/tpx/subs.h, ext/tpx/utils.cpp: added HFC134a

2005-01-13 10:02  hkmoffa

	* Cantera/src/StoichSubstance.h: Added a "get" in front of some
	  void functions.

2005-01-13 06:02  dggoodwin

	* Cantera/src/: ChemEquil.h, ThermoPhase.h, config.h,
	  oneD/Domain1D.h, oneD/StFlow.cpp: changed code related to
	  adiabatic flame

2005-01-13 05:58  dggoodwin

	* Cantera/matlab/cantera/: @ThermoPhase/equilibrate.m,
	  private/thermomethods.cpp: added option to select equil solver

2005-01-13 05:58  dggoodwin

	* Cantera/matlab/cantera/examples/: catcomb.m, flame1.m,
	  prandtl1.m, test_examples.m: added script to test selected
	  examples without pausing

2005-01-12 16:33  hkmoffa

	* Cantera/src/ThermoPhase.h: Forgot to add to functions to
	  ThermoPhase.h:    getActivityCoefficents()
	  getStandardVolumes()

2005-01-12 15:09  hkmoffa

	* Cantera/src/: ConstDensityThermo.cpp, ConstDensityThermo.h,
	  GRI_30_Kinetics.cpp, GasKinetics.cpp, GasKinetics.h,
	  IdealGasPhase.cpp, IdealGasPhase.h, StoichSubstance.cpp,
	  StoichSubstance.h, ThermoPhase.h, config.h, oneD/StFlow.cpp,
	  transport/MultiTransport.cpp, transport/TransportFactory.cpp:
	  This delta contains the suggested changes to the ThermoPhase API.
	   It clears up the distinction between the quantities calculated
	  from the standard state and quantitities that are calculated
	  based on the "reference state".  The reference state is at a
	  fixed pressure, while the standard state is at the T and P of the
	  solution.

	  The delta also contains changes to the implementation of the
	  Ideal Gas Law. The standard concentration is now defined to be
	  equal to p/RT instead of the previous value of p_ref/RT.  Also,
	  as a consequence the returned values of the activities will be
	  equal to the solution mole fractions. Numerically, equilibrium
	  constants and reaction rates are the same up to numerical
	  round-off error.

2005-01-12 08:03  hkmoffa

	* Cantera/clib/src/Makefile.in: Fixed an error in this Makefile.
	  libclib.a was being installed in the lib directory itself with
	  the name "cantera". Now it is being installed in
	  ctversion/libclib.a

2005-01-11 18:22  hkmoffa

	* .cvsignore, Makefile.in, Cantera/clib/src/Makefile.in,
	  Cantera/cxx/Makefile.in, Cantera/cxx/demos/Makefile.in,
	  Cantera/src/Kinetics.cpp, Cantera/src/Kinetics.h,
	  Cantera/src/KineticsFactory.cpp, Cantera/src/Makefile.in,
	  Cantera/src/config.h, Cantera/src/ctvector.cpp,
	  Cantera/src/converters/Makefile.in, Cantera/src/oneD/Makefile.in,
	  Cantera/src/transport/Makefile.in, Cantera/src/zeroD/Makefile.in,
	  config/configure, config/configure.in, ext/blas/Makefile.in,
	  ext/cvode/Makefile.in, ext/f2c_blas/Makefile.in,
	  ext/f2c_lapack/Makefile.in, ext/f2c_libs/Makefile.in,
	  ext/f2c_math/Makefile.in, ext/f2c_recipes/Makefile.in,
	  ext/lapack/Makefile.in, ext/math/Makefile.in,
	  ext/recipes/Makefile.in, ext/tpx/Makefile.in,
	  tools/src/Makefile.in, tools/templates/cxx/demo.mak.in: Revision
	  of the Makefiles to eliminate extra work in recompiles.  No
	  linking or compilation will be done if not necessary

	  .h files are sent to build/include tree in the lower level
	  makefiles, as a consequence.

	  Kinetics.cpp new file was created by taking routines in
	  KineticsFactory.cpp and placing them in the new file.

	  demo.mak.in now has a CXX_END_LIBS capability. My linux system
	  needs this for some reason.

2005-01-11 18:19  hkmoffa

	* configure: Changed the default for NEED_NUMERIC from 'n' to 'y'
	  to help with backwards compatibility with previous releases.

2005-01-10 06:57  dggoodwin

	* tools/doc/python/mkmkdoc.py: initial import

2005-01-09 12:29  dggoodwin

	* config.h, configure, Cantera/clib/src/ct.cpp,
	  Cantera/clib/src/ctmultiphase.cpp,
	  Cantera/cxx/include/PureFluid.h, Cantera/cxx/src/writelog.cpp,
	  Cantera/python/ctml_writer.py, Cantera/python/winsetup.py,
	  Cantera/python/Cantera/Mixture.py,
	  Cantera/python/Cantera/mixture.py, Cantera/python/Cantera/num.py,
	  Cantera/src/ChemEquil.cpp, Cantera/src/ChemEquil.h,
	  Cantera/src/Constituents.cpp, Cantera/src/ImplicitChem.cpp,
	  Cantera/src/InterfaceKinetics.h, Cantera/src/Makefile.in,
	  Cantera/src/MultiPhase.cpp, Cantera/src/MultiPhase.h,
	  Cantera/src/MultiPhaseEquil.cpp, Cantera/src/MultiPhaseEquil.h,
	  Cantera/src/PureFluidPhase.h,
	  Cantera/src/SpeciesThermoFactory.cpp,
	  Cantera/src/ThermoFactory.cpp, Cantera/src/config.h,
	  Cantera/src/ct2ctml.cpp, Cantera/src/global.h,
	  Cantera/src/importCTML.h, Cantera/src/converters/CKParser.cpp,
	  Cantera/src/oneD/StFlow.cpp, Cantera/src/transport/Makefile.in,
	  Cantera/src/zeroD/Makefile.in,
	  Cantera/src/zeroD/flowControllers.h, apps/MixMaster/DataFrame.py,
	  apps/MixMaster/DataGraph.py, apps/MixMaster/Mix.py,
	  apps/MixMaster/main.py, bin/mixmaster.py,
	  data/inputs/graphite.cti, data/inputs/water.cti,
	  tools/src/package4mac.in, tools/testtools/csvdiff.cpp: trunk
	  changes merged in

2005-01-09 11:32  dggoodwin

	* tools/testtools/csvdiff.cpp: modified csvdiff to allow larger
	  error bounds when solution is changing rapidly

2005-01-09 10:58  dggoodwin

	* test_problems/silane_equil/output_blessed.txt: updated blessed
	  output due to format change

2005-01-08 14:27  dggoodwin

	* data/inputs/: graphite.cti, water.cti: added water.cti

2005-01-07 17:10  dggoodwin

	* win32/vc7/: cantera/cantera.vcproj, config_h/config_h.vcproj:
	  added a file to project cantera

2005-01-07 16:59  dggoodwin

	* win32/vc7/config_h/config_h.vcproj: added project config_h

2005-01-07 16:29  dggoodwin

	* win32/vc7/demos/: CanteraDemos.sln, Rankine.vcproj: added project
	  rankine

2005-01-07 02:26  dggoodwin

	* Cantera/: clib/src/ct.cpp, clib/src/ct.h,
	  cxx/demos/Makefile.install, cxx/demos/rankine.cpp,
	  cxx/src/writelog.cpp, src/ChemEquil.h, src/Constituents.cpp,
	  src/DenseMatrix.cpp, src/ImplicitChem.cpp,
	  src/InterfaceKinetics.cpp, src/InterfaceKinetics.h,
	  src/Makefile.in, src/PureFluidPhase.cpp, src/PureFluidPhase.h,
	  src/ShomateThermo.h, src/ThermoFactory.cpp, src/config.h,
	  src/ct2ctml.cpp, src/global.h, src/importCTML.h,
	  src/converters/CKParser.cpp, src/converters/CKParser.h,
	  src/converters/CKReader.h, src/converters/Group.h,
	  src/converters/ckr_utils.cpp, src/converters/ckr_utils.h,
	  src/converters/config.h, src/converters/writelog.cpp,
	  src/oneD/StFlow.cpp, src/transport/Makefile.in,
	  src/zeroD/Makefile.in, src/zeroD/flowControllers.h: merged
	  changes from branch

2005-01-07 01:58  dggoodwin

	* Cantera/src/MultiPhase.cpp: initial import

2005-01-07 01:55  dggoodwin

	* Cantera/: src/PureFluidPhase.cpp, src/PureFluidPhase.h,
	  src/ThermoFactory.cpp, clib/src/ct.cpp, python/Cantera/num.py:
	  changed class PureFluid to PureFluidPhase

2005-01-07 01:46  dggoodwin

	* Cantera/cxx/include/PureFluid.h: merged from branch

2005-01-07 01:43  dggoodwin

	* Cantera/cxx/include/PureFluid.h: initial import

2005-01-07 01:39  dggoodwin

	* Cantera/cxx/demos/: Makefile.install, rankine.cpp: added open
	  rankine example

2005-01-06 15:42  dggoodwin

	* config.h, winconfig.h, Cantera/python/Cantera/num.py,
	  Cantera/src/config.h: cleanup

2005-01-06 15:30  dggoodwin

	* Cantera/cxx/demos/flamespeed.cpp,
	  examples/cxx/transport_example1.cpp: minor cleanup

2005-01-06 04:49  dggoodwin

	* ChangeLog, README.txt, Cantera/clib/src/ctmultiphase.cpp,
	  Cantera/cxx/demos/flamespeed.cpp,
	  Cantera/python/Cantera/__init__.py,
	  Cantera/python/examples/flame1.py,
	  Cantera/python/examples/flame2.py,
	  Cantera/python/examples/npflame1.py,
	  Cantera/python/examples/stflame1.py, Cantera/src/ChemEquil.h,
	  Cantera/src/Makefile.in, Cantera/src/MultiPhaseEquil.cpp,
	  Cantera/src/ct2ctml.cpp, Cantera/src/ctvector.cpp,
	  Cantera/src/oneD/StFlow.cpp, examples/cxx/transport_example1.cpp,
	  ext/tpx/Sub.cpp: trunk changes merged into branch

2005-01-06 04:32  dggoodwin

	* test_problems/silane_equil/output_blessed.txt: updated blessed
	  output due to format change

2005-01-06 03:59  dggoodwin

	* Cantera/python/Cantera/: Mixture.py, mixture.py: re-added

2005-01-06 03:58  dggoodwin

	* Cantera/python/Cantera/: Mixture.py, __init__.py, num.py,
	  solve.py, units.py, OneD/__init__.py: merged trunk

2005-01-06 03:09  dggoodwin

	* Cantera/src/ctvector.cpp: fixed memory leak in operator=

2005-01-06 03:08  dggoodwin

	* Cantera/src/oneD/StFlow.cpp: fixed memory leak in showSolution

2005-01-05 13:04  dggoodwin

	* README.txt, config.h, Cantera/clib/src/ctmultiphase.cpp,
	  Cantera/python/Cantera/__init__.py,
	  Cantera/python/Cantera/solve.py, Cantera/python/Cantera/units.py,
	  Cantera/python/Cantera/OneD/__init__.py,
	  Cantera/python/examples/flame1.py,
	  Cantera/python/examples/flame2.py,
	  Cantera/python/examples/npflame1.py,
	  Cantera/python/examples/stflame1.py, Cantera/src/ChemEquil.h,
	  Cantera/src/Makefile.in, Cantera/src/MultiPhase.h,
	  Cantera/src/MultiPhaseEquil.cpp, Cantera/src/config.h,
	  Cantera/src/ct2ctml.cpp, examples/cxx/transport_example1.cpp:
	  minor cleanup

2005-01-05 04:36  dggoodwin

	* INSTALLING, README, README.txt: removed unneeded files

2005-01-04 17:28  dggoodwin

	* ext/tpx/Sub.cpp: fixed problem with starting guess for T in Tsat
	  that caused an exception with T > Tcrit on entry

2005-01-04 17:04  hkmoffa

	* win32/vc7/cvode/.cvsignore: Added a directory name

2005-01-04 17:03  hkmoffa

	* win32/vc7/.cvsignore: added a file name

2005-01-04 17:01  hkmoffa

	* win32/vc7/: transport/.cvsignore, oneD/.cvsignore: Added a
	  directory

2005-01-04 17:00  hkmoffa

	* win32/vc7/SetupCantera/.cvsignore: Adding the .cvsignore file

2005-01-04 16:58  hkmoffa

	* win32/vc7/clib/: .cvsignore, clib.vcproj: Changed the library
	  paths in the Debug and Release versions.

2005-01-04 16:54  hkmoffa

	* win32/vc7/ctmatlab/: .cvsignore, runmlab.cmd: changed forward
	  slashes into backslashes.

2005-01-04 16:46  hkmoffa

	* win32/vc7/ctpython/: .cvsignore, ctpython.vcproj, runpython.cmd:
	  changed runpython.cmd to use backslashes.

2005-01-04 14:28  hkmoffa

	* win32/vc7/SetupCantera/SetupCantera.vdproj: Changed LF's to
	  CR-LF's in the entire file. mcvc++ was having trouble reading the
	  file with just LF's.

2005-01-04 14:23  hkmoffa

	* win32/vc7/SetupCantera/SetupCantera.vdproj: Changed LF's into
	  CR-LF's in this file. This was causing msvc++ not to be able to
	  load the file, at least for me.

2005-01-04 12:32  hkmoffa

	* Cantera/src/transport/Makefile.in: New Makefile Format:
	  Installs .h files and libs at the same time.

2005-01-04 12:30  hkmoffa

	* Cantera/src/zeroD/Makefile.in: New Makefile format:	 installs
	  .h files and libs at the same time.

2005-01-03 15:40  hkmoffa

	* Cantera/python/Cantera/__init__.py: Took out the reference to
	  ctdata.  ATM, this causes all python jobs to fail.

2005-01-03 15:12  hkmoffa

	* Cantera/src/ct2ctml.cpp: ifdeffed out a static function that was
	  not used.

2004-12-18 07:16  dggoodwin

	* Cantera/src/converters/: CKParser.cpp, CKReader.h, config.h:
	  minor cleanup

2004-12-15 22:56  dggoodwin

	* Cantera/src/MultiPhase.cpp: initial import

2004-12-13 10:38  dggoodwin

	* win32/vc7/demos/: CanteraDemos.sln, ReadMe.txt, demo.vcproj:
	  initial import

2004-12-13 06:58  dggoodwin

	* tools/bin/cvs2cl.pl: updated version

2004-12-13 06:42  dggoodwin

	* configure, Cantera/src/MultiPhase.h, config/configure,
	  config/configure.in: misc cleanup

2004-12-13 06:36  dggoodwin

	* Makefile.in: added test export-win

2004-12-10 11:36  dggoodwin

	* Cantera/python/Cantera/OneD/: BurnerDiffFlame.py, BurnerFlame.py,
	  CounterFlame.py, StagnationFlow.py, onedim.py: modified python
	  files to use either numarray or Numeric

2004-12-10 11:32  dggoodwin

	* Cantera/python/: Cantera/Func.py, Cantera/Kinetics.py,
	  Cantera/Mixture.py, Cantera/Phase.py, Cantera/Reactor.py,
	  Cantera/SurfacePhase.py, Cantera/ThermoPhase.py,
	  Cantera/Transport.py, Cantera/excel.py, Cantera/schem.py,
	  Cantera/solve.py, Cantera/stoich.py, Cantera/tecplot.py,
	  examples/isentropic.py: modified python files to use either
	  numarray or Numeric

2004-12-09 14:10  dggoodwin

	* Cantera/src/: MultiPhase.h, MultiPhaseEquil.cpp,
	  MultiPhaseEquil.h: fixed convergence problem in MultiPhaseEquil

2004-12-02 08:48  dggoodwin

	* data/inputs/: graphite.cti, silicon.cti, silicon_carbide.cti:
	  initial import

2004-12-01 15:01  dggoodwin

	* config.h.in, Cantera/clib/src/Makefile.in,
	  Cantera/clib/src/ctmultiphase.cpp,
	  Cantera/clib/src/ctmultiphase.h,
	  Cantera/cxx/include/equilibrium.h,
	  Cantera/python/Cantera/Mixture.py,
	  Cantera/python/src/ctmultiphase_methods.cpp,
	  Cantera/python/src/methods.h, Cantera/python/src/pycantera.cpp,
	  Cantera/src/DenseMatrix.cpp, Cantera/src/Makefile.in,
	  Cantera/src/phasereport.cpp: support for multiphase equilibrium

2004-12-01 14:57  dggoodwin

	* Cantera/src/: MultiPhaseEquil.h, MultiPhaseEquil.cpp: support for
	  multiphase equilibrium

2004-12-01 14:56  dggoodwin

	* Cantera/src/MultiPhase.h: multiphase mixtures

2004-11-23 19:08  dggoodwin

	* Cantera/src/importCTML.cpp: changed buildSolutionFromXML to use
	  get_XML_NameID instead of get_XML_Node

2004-11-15 14:07  hkmoffa

	* win32/vc7/ck2cti/ck2cti.vcproj: use debug libraries on debug
	  version.

2004-11-15 14:05  hkmoffa

	* win32/vc7/diamondSurf/diamondSurf.vcproj: ignored msvct default
	  library

2004-11-15 14:03  hkmoffa

	* win32/vc7/cantera/cantera.vcproj: Dos format

2004-11-15 13:41  hkmoffa

	* win32/vc7/clib/clib.vcproj: For the debug dll, you have to
	  compile with debug libraries.

2004-11-15 12:52  hkmoffa

	* Cantera/clib/src/ct.cpp: Added a static_cast.

2004-11-15 12:51  hkmoffa

	* Cantera/clib/src/ct.cpp: Added a return statement.

2004-11-14 19:17  dggoodwin

	* Cantera/cxx/demos/flamespeed.cpp: initial import

2004-11-14 18:33  dggoodwin

	* Makefile.in, configure, Cantera/cxx/include/equilibrium.h,
	  Cantera/fortran/src/Makefile.in, Cantera/python/ctml_writer.py,
	  Cantera/src/ChemEquil.cpp, Cantera/src/ChemEquil.h,
	  Cantera/src/ct_defs.h, Cantera/src/ctvector.cpp,
	  Cantera/src/ctvector.h, config/configure, config/configure.in,
	  ext/tpx/RedlichKwong.cpp: changed f90 mod file handling in
	  Makefiles

2004-11-12 15:37  dggoodwin

	* Cantera/src/oneD/: Domain1D.h, Sim1D.cpp, Sim1D.h, StFlow.cpp,
	  StFlow.h, boundaries1D.cpp: changes by Karl Meredith to implement
	  adiabatic, freely-propagating flames

2004-11-02 02:23  dggoodwin

	* Cantera/src/: ImplicitChem.h, ImplicitChem.cpp: re-added file

2004-10-19 03:47  dggoodwin

	* Cantera/src/xml.h: added 'const' to 'write'

2004-10-19 03:44  dggoodwin

	* Cantera/src/xml.cpp: changed exception XML_NoChild to print
	  offending XML_Node.

2004-10-19 03:43  dggoodwin

	* Cantera/src/transport/TransportFactory.cpp: changed reading of
	  transport data from XML tree so that species with no transport
	  data (e.g. surface species) do not cause an exception to be
	  thrown because the have no 'transport' child element.

2004-10-18 12:52  hkmoffa

	* bin/install_tsc.in: Check for destination directory existing.

2004-10-16 04:09  dggoodwin

	* win32/vc7/SetupCantera/SetupCantera.vdproj: initial import

2004-10-16 03:12  dggoodwin

	* Cantera/python/winsetup.py: initial import

2004-10-15 16:10  dggoodwin

	* Cantera/: src/ct2ctml.cpp, src/global.h, src/logger.h,
	  src/misc.cpp, matlab/cantera/private/ctmethods.cpp,
	  matlab/cantera/private/mllogger.h, python/src/pycantera.cpp,
	  python/src/pylogger.h, python/src/pyutils.h,
	  python/src/writelog.cpp: added environment-specific classes to
	  write log files

2004-10-13 21:24  dggoodwin

	* tools/src/: package4mac.in, postflight: Mac install script

2004-10-12 06:56  dggoodwin

	* win32/vc7/: cantera.sln, cantera_examples.sln,
	  cantera/cantera.vcproj, ck2cti/ck2cti.vcproj, clib/clib.vcproj,
	  converters/converters.vcproj, cti2ctml/cti2ctml.vcproj,
	  cvode/cvode.vcproj, cxxutils/cxxutils.vcproj,
	  f2c_blas/f2c_blas.vcproj, f2c_lapack/f2c_lapack.vcproj,
	  f2c_libs/f2c_libs.vcproj, f2c_math/f2c_math.vcproj,
	  f2c_recipes/f2c_recipes.vcproj, oneD/oneD.vcproj,
	  silane_equil/silane_equil.vcproj, tpx/tpx.vcproj,
	  transport/transport.vcproj, zeroD/zeroD.vcproj: added ctpython,
	  changed c libs to multithreaded DLL, changed properties for
	  release version

2004-10-12 06:55  dggoodwin

	* win32/vc7/ctpython/: ctpython.vcproj, runpython.cmd: files to
	  build the Python interface within Visual Studio

2004-10-11 07:36  dggoodwin

	* win32/vc7/: cantera.sln, cantera/cantera.vcproj,
	  cvode/cvode.vcproj, f2c_arithchk/f2c_arithchk.vcproj,
	  f2c_blas/f2c_blas.vcproj, f2c_lapack/f2c_lapack.vcproj,
	  f2c_libs/f2c_libs.vcproj, f2c_math/f2c_math.vcproj,
	  f2c_recipes/f2c_recipes.vcproj, tpx/tpx.vcproj,
	  transport/transport.vcproj: bug fixes

2004-10-10 13:46  dggoodwin

	* config.h.in, Cantera/src/DenseMatrix.cpp,
	  Cantera/src/GasKinetics.cpp, Cantera/src/ctvector.cpp,
	  Cantera/src/ctvector.h, Cantera/src/converters/CKParser.cpp,
	  Cantera/src/converters/writelog.cpp, Cantera/src/oneD/StFlow.cpp,
	  Cantera/src/transport/TransportFactory.cpp,
	  Cantera/src/transport/TransportParams.h, ext/f2c_libs/f2c.h,
	  ext/f2c_recipes/simplx.c: changes to make type integer compatible
	  with f2c

2004-10-10 05:11  dggoodwin

	* Cantera/src/importCTML.cpp: moved arrays used to check for dup
	  rxns into a class to avoid problems with initialization on some
	  systems (FreeBSD)

2004-10-10 05:09  dggoodwin

	* Cantera/src/: global.h, misc.cpp: added sleep function

2004-10-10 05:09  dggoodwin

	* Cantera/src/ct2ctml.cpp: added sleep before call to python

2004-10-09 11:58  dggoodwin

	* ext/tpx/RedlichKwong.h: removed use of pow

2004-10-09 11:55  dggoodwin

	* ext/tpx/RedlichKwong.cpp: eliminated use of pow

2004-10-09 08:45  dggoodwin

	* ext/tpx/: RedlichKwong.cpp, RedlichKwong.h: initial import

2004-10-09 08:27  dggoodwin

	* tools/bin/cvs2cl.pl: initial import

2004-10-09 08:21  dggoodwin

	* Cantera/python/Cantera/Transport.py: added method molarFluxes

2004-10-09 08:19  dggoodwin

	* Cantera/python/Cantera/SurfacePhase.py: minor cleanup

2004-10-09 08:18  dggoodwin

	* Cantera/python/src/pyutils.h: corrected problem with truncation
	  of error messages

2004-10-09 08:17  dggoodwin

	* Cantera/python/src/cttransport_methods.cpp: added
	  py_getMolarFluxes

2004-10-09 08:15  dggoodwin

	* Cantera/python/Cantera/ThermoPhase.py: added import statement

2004-10-09 08:13  dggoodwin

	* Cantera/matlab/: Makefile.in, cantera/examples/rankine.m,
	  cantera/private/ctfunctions.cpp, cantera/private/ctmatutils.h,
	  cantera/private/phasemethods.cpp,
	  cantera/private/thermomethods.cpp: added support for exceptions
	  from tpx

2004-10-09 08:07  dggoodwin

	* Cantera/src/: Phase.h, Phase.cpp: added const in restoreState

2004-10-09 08:05  dggoodwin

	* Cantera/src/transport/TransportFactory.cpp: minor cleanup

2004-10-09 08:03  dggoodwin

	* Cantera/src/transport/: MultiTransport.h, MultiTransport.cpp:
	  added methods getMolarFluxes and getMassFluxes

2004-10-09 08:00  dggoodwin

	* Cantera/src/: importCTML.cpp, xml.cpp: cleanup

2004-10-09 07:58  dggoodwin

	* Cantera/src/misc.cpp: moved exception constructor definitions
	  here from ctexceptions.h

2004-10-09 07:57  dggoodwin

	* Cantera/src/ctexceptions.h: moved constructor definitions to
	  misc.cpp

2004-10-09 07:55  dggoodwin

	* Cantera/src/funcs.cpp: added include file

2004-10-09 07:48  dggoodwin

	* Cantera/src/PureFluidPhase.cpp: moved most method definitions
	  here from header file.

2004-10-09 07:47  dggoodwin

	* Cantera/src/PureFluidPhase.h: moved most method definitions to
	  PureFluidPhase.cpp

2004-10-08 10:09  hkmoffa

	* Cantera/src/transport/TransportParams.h: Added an include for
	  XML_Writer.h

2004-10-08 10:09  hkmoffa

	* Cantera/src/transport/MMCollisionInt.cpp: Added an XML_writer
	  include

2004-10-05 10:56  dggoodwin

	* ext/tpx/Sub.h: added exceptions for error handling

2004-10-05 10:55  dggoodwin

	* ext/tpx/Sub.cpp: Added exceptions to handle errors.

2004-10-05 09:20  hkmoffa

	* config/configure.in: Added rule to make bin/install_tsc

2004-10-05 09:15  hkmoffa

	* bin/: .cvsignore, install_tsc.in: Utility script to install a
	  header file, only if the modified date has changed.

2004-10-03 01:30  dggoodwin

	* Cantera/src/XML_Writer.h: initial import

2004-10-03 01:28  dggoodwin

	* Cantera/src/transport/TransportBase.h: added method getMassFluxes

2004-10-03 01:24  dggoodwin

	* Cantera/src/xml.h: removed class XML_Writer

2004-10-03 00:41  dggoodwin

	* Cantera/src/xml.cpp: added line numbers to exception error
	  messages

2004-10-02 00:25  dggoodwin

	* Cantera/src/ct2ctml.cpp: minor cleanup

2004-10-01 12:38  hkmoffa

	* Cantera/matlab/.cvsignore: Added a file.

2004-10-01 12:37  hkmoffa

	* Cantera/matlab/setup_winmatlab.py: Removing a file that gets
	  automatically created during the configuration process.

2004-10-01 12:34  hkmoffa

	* Makefile.in: Took out automatic deletion of static libraries at
	  the beginning of every make operation.

2004-10-01 12:31  hkmoffa

	* config/configure.in: Added more handling of the PYTHON_CMD
	  variable.

2004-10-01 12:30  hkmoffa

	* configure: Uncommented out PYTHON_CMD.  It's now set to
	  "default", if unspecified. Then, this default is treated in
	  config/configure with special code.

2004-09-24 13:35  hkmoffa

	* win32/vc7/configure.vc++: Added the USE_DLL environmental
	  variable.

2004-09-24 13:16  hkmoffa

	* Makefile.in, configure: Added USE_DLL variable and its controls.
	  Takes care of a bug that krept in for compiles with MSVC++v.6.0
	  while trying to stand up MSVC++v7.0 compiles.

2004-09-24 13:15  hkmoffa

	* config/configure.in: Added USE_CLIB_DLL evaluation.

2004-09-24 13:14  hkmoffa

	* Cantera/python/Makefile.in: took care of problem with clib.dll
	  for MSVC6.0

2004-09-24 10:24  hkmoffa

	* win32/README: Added another step, involving setting up paths and
	  environmental variables.

2004-09-20 03:18  dggoodwin

	* Cantera/src/: EdgeKinetics.cpp, EdgeKinetics.h, ReactionData.h,
	  importCTML.cpp, converters/ck2ct.cpp: added ability to specify
	  beta for charge transfer reactions

2004-09-16 15:08  hkmoffa

	* Makefile.in: Added dll install

2004-09-16 15:07  hkmoffa

	* win32/README: Added another step.

2004-09-16 14:43  hkmoffa

	* test_problems/python/runtest: Fixed an error in the default
	  specifation of python executable

2004-09-16 10:57  hkmoffa

	* tools/src/ck2cti.cpp: Added an id string.

2004-09-16 10:54  hkmoffa

	* win32/vc7/cantera.sln: Added a few more dependencies to sln file.

2004-09-16 10:54  hkmoffa

	* win32/vc7/ck2cti/ck2cti.vcproj: Fixed an error.

2004-09-16 10:53  hkmoffa

	* win32/vc7/cvode/cvode.vcproj: Changed an absolute pathname into a
	  relative pathname.

2004-09-16 10:52  hkmoffa

	* test_problems/: diamondSurf/Makefile.in,
	  silane_equil/Makefile.in, surfkin/Makefile.in: turned off
	  automatic compilation during make test for windows machines.

2004-09-16 10:51  hkmoffa

	* test_problems/cxx_ex/: .cvsignore, gri30.xml,
	  kin1_blessed_win.csv, kin2_blessed_win.csv, runtest, silane.xml:
	  Made the blessed files machine dependent for this test.

2004-09-16 10:30  hkmoffa

	* test_problems/ck2cti_test/gri30_tran.dat: Changed a LJ value to
	  prevent roundoff error from leading to an error failure

2004-09-16 10:13  hkmoffa

	* test_problems/ck2cti_test/: .cvsignore, runtest.in: Added a step
	  to change 3 exponent expressions into 2 exponenet expressions.

2004-09-16 10:06  hkmoffa

	* Cantera/src/converters/ck2ct.cpp: Took out a print statement that
	  was causing a test to fail.

2004-09-02 13:57  hkmoffa

	* win32/vc7/configure.vc++: Took out HKM comments

2004-09-02 13:48  hkmoffa

	* win32/README: Added a cd command.

2004-08-28 09:13  dggoodwin

	* tools/bin/erase: script to remove a file from the repository

2004-08-28 09:12  dggoodwin

	* Cantera/src/: ArrayViewer.h, DenseMatrix.cpp, EdgeKinetics.h,
	  GRI_30_Kinetics.h, GasKineticsWriter.h, InterfaceKinetics.h,
	  PureFluidPhase.h, ReactionStoichMgr.h, SimpleThermo.h,
	  SpeciesThermoMgr.h, StoichManager.h, StoichSubstance.h,
	  ThermoPhase.h, newton_utils.cpp, converters/CKParser.cpp,
	  converters/Group.h, converters/Reaction.h,
	  converters/atomicWeightDB.cpp, converters/config.h,
	  converters/filter.cpp, converters/thermoFunctions.cpp,
	  oneD/Jac1D.h, oneD/Newton1D.h, oneD/Solid1D.cpp,
	  oneD/newton_utils.cpp, zeroD/Reactor.cpp, zeroD/Reservoir.h:
	  cleanup

2004-08-27 13:37  hkmoffa

	* .cvsignore: Added 2 files.

2004-08-27 13:35  hkmoffa

	* bin/.cvsignore: added some windows tmp files

2004-08-27 13:29  hkmoffa

	* win32/README: Added detailed instructions for vc7

2004-08-27 13:26  hkmoffa

	* win32/vc7/: .cvsignore, cantera.sln, cantera_examples.sln,
	  csvdiff/.cvsignore, csvdiff/csvdiff.vcproj,
	  cxx_examples/.cvsignore, cxx_examples/cxx_examples.vcproj: Second
	  generation of vc7 port.

2004-08-27 13:21  hkmoffa

	* test_problems/python/runtest: Currently, linux and MSVC are
	  producing the same results on this test problem. I changed
	  runtest to substitute the right machine dependent blessed file.

2004-08-27 13:08  hkmoffa

	* tools/testtools/: csvdiff.cpp, mdp_allo.cpp, mdp_allo.h: Changes
	  to support MSVC

2004-08-27 13:03  hkmoffa

	* tools/testtools/csvdiff.cpp: Added a getopt() capability for
	  WINMSC

2004-08-27 09:45  hkmoffa

	* config/configure.in: Added a default 0 to BUILD_PARTICLES value

2004-08-27 08:42  hkmoffa

	* win32/vc7/configure.vc++: Initial commit

2004-08-10 13:39  hkmoffa

	* test_problems/python/: .cvsignore, flame1_blessed_linux.csv,
	  runtest: Added a machine dependent blessed file capability

2004-08-10 11:18  hkmoffa

	* config/configure.in: Added support for the new python_win_prefix
	  variable.    -> This needs to be backslashed.    -> all other
	  variables on all other platforms (and on OS_IS_WIN)	    need to
	  be forward slashed.

2004-08-10 11:16  hkmoffa

	* Cantera/python/Makefile.in: added python_win_prefix variable.  On
	  windows this needs to be a backslash, unlike all the other
	  variables which need to be regular slashes. Therefore, I had to
	  create a new variable to do this.

2004-08-10 10:28  hkmoffa

	* config/configure.in: Several changes:    CYGWIN is now undefined,
	  not just 0	WINMSVC is now undefined, not just 0

	     OS_IS_CYGWIN is now 0 when OS_IS_WIN = 1

2004-08-09 18:31  hkmoffa

	* .cvsignore: added a dir.

2004-08-09 18:29  hkmoffa

	* test_problems/python/runtest: Tried to add a default $1, so that
	  it runs like all the rest.

2004-08-09 18:15  hkmoffa

	* Cantera/python/.cvsignore: added a file.

2004-08-09 18:12  hkmoffa

	* tools/src/cti2ctml.cpp: MSVC warning message

2004-08-09 18:11  hkmoffa

	* examples/cxx/: example_utils.h, examples.cpp: MSVC experienced an
	  error on this code. fixed it.

2004-08-09 18:09  hkmoffa

	* config/: .cvsignore, configure.in: arith.h needs to be created
	  for win

2004-08-09 18:08  hkmoffa

	* Cantera/python/Makefile.in: clib.dll needs to be copied by hand

2004-08-09 18:06  hkmoffa

	* test_problems/diamondSurf/: .cvsignore, runtest: MSVC differences
	  no longer matter.

2004-08-09 18:01  hkmoffa

	* Cantera/.cvsignore: Added a file.

2004-08-09 18:00  hkmoffa

	* bin/get_arch: Added cygwin support

2004-08-09 17:23  hkmoffa

	* ext/f2c_libs/: .cvsignore, arith.hwin32: added a file.

2004-08-09 17:22  hkmoffa

	* ext/f2c_libs/f2c.h: Added windows specific definition block

2004-08-09 17:20  hkmoffa

	* ext/f2c_lapack/dlamch.c: Added a stdio.h reference.

2004-08-09 17:18  hkmoffa

	* win32/vc7/: .cvsignore, cantera.sln, cantera/.cvsignore,
	  cantera/cantera.vcproj, ck2cti/.cvsignore, ck2cti/ck2cti.vcproj,
	  clib/.cvsignore, clib/clib.vcproj, converters/.cvsignore,
	  converters/converters.vcproj, cti2ctml/.cvsignore,
	  cti2ctml/cti2ctml.vcproj, cvode/.cvsignore, cvode/cvode.vcproj,
	  cxxutils/.cvsignore, cxxutils/cxxutils.vcproj,
	  diamondSurf/.cvsignore, diamondSurf/diamondSurf.vcproj,
	  f2c_arithchk/.cvsignore, f2c_arithchk/f2c_arithchk.vcproj,
	  f2c_blas/.cvsignore, f2c_blas/f2c_blas.vcproj,
	  f2c_lapack/.cvsignore, f2c_lapack/f2c_lapack.vcproj,
	  f2c_libs/.cvsignore, f2c_libs/f2c_libs.vcproj,
	  f2c_math/.cvsignore, f2c_math/f2c_math.vcproj,
	  f2c_recipes/.cvsignore, f2c_recipes/f2c_recipes.vcproj,
	  oneD/.cvsignore, oneD/oneD.vcproj, pycantera/.cvsignore,
	  pycantera/pycantera.vcproj, silane_equil/.cvsignore,
	  silane_equil/silane_equil.vcproj, surfkin/.cvsignore,
	  surfkin/surfkin.vcproj, tpx/.cvsignore, tpx/tpx.vcproj,
	  transport/.cvsignore, transport/transport.vcproj,
	  zeroD/.cvsignore, zeroD/zeroD.vcproj: First commit of vc7 project
	  files.

2004-08-09 16:58  hkmoffa

	* test_problems/silane_equil/: .cvsignore, runtest: MSVS
	  differences are now eliminated via a sed script.

2004-08-09 16:45  hkmoffa

	* bin/exp3to2.sh: new shell script used for test programs.

2004-08-09 15:21  hkmoffa

	* test_problems/surfkin/: .cvsignore, runtest: added -w option to
	  diff, so that dos unix text file differences aren't important.

2004-08-09 15:06  hkmoffa

	* test_problems/diamondSurf/.cvsignore: Added pc file.

2004-08-09 14:28  hkmoffa

	* ext/f2c_blas/xerbla.c: added an include

2004-08-09 13:51  hkmoffa

	* ext/f2c_libs/signal1.h: added this file for convenience

2004-08-09 13:17  hkmoffa

	* ext/f2c_libs/sysdep1.h: Added this file in. It is recreated
	  during linux makes, but vc++ makes don't create it.

2004-08-09 10:41  hkmoffa

	* config/configure.in: Changed cygpath -a -w to cygpath -a -m. This
	  causes backslashes to be replaced with regular slashes.
	  Backslashes in strings were causing a lot of problems, as they
	  are interpreted as escape sequences.	Regular slashes in c++ on
	  the pc operate just like backslashes in all cases.

2004-08-09 10:38  hkmoffa

	* Cantera/src/ct2ctml.cpp: Got rid of msvc++ warning message.

2004-08-09 09:54  hkmoffa

	* Cantera/.cvsignore: added cads

2004-08-09 09:50  hkmoffa

	* test_problems/surfkin/.cvsignore: Added files

2004-08-09 08:12  hkmoffa

	* Cantera/python/tutorial/.cvsignore: Changed the name of a file.

2004-08-09 08:11  hkmoffa

	* Cantera/python/tutorial/.cvsignore: Added a file

2004-08-08 22:10  dggoodwin

	* Makefile.in, configure, Cantera/fortran/src/Makefile.in,
	  Cantera/python/setup.py.in, Cantera/src/DenseMatrix.cpp,
	  Cantera/src/DenseMatrix.h, Cantera/src/ctlapack.h,
	  Cantera/src/ctvector.cpp, Cantera/src/ctvector.h,
	  Cantera/src/misc.cpp, config/configure, config/configure.in,
	  ext/math/fdump.f: improvements to the configuration process

2004-08-06 16:29  hkmoffa

	* win32/vc6/: cantera.dsw, all/all.dsp, blas/blas.dsp,
	  cantera/cantera.dsp, cantera_examples/cantera_examples.dsw,
	  ck2cti/ck2cti.dsp, ckreader/ckreader.dsp, clib/clib.dsp,
	  converters/converters.dsp, ct/ct.dsp, ctmath/ctmath.dsp,
	  ctsetup/ctsetup.dsp, cvode/cvode.dsp, cxxutils/cxxutils.dsp,
	  cxxutils/cxxutils.mak, lapack/lapack.dsp, oneD/oneD.dsp,
	  recipes/recipes.dsp, tpx/tpx.dsp, tpx/tpx.mak,
	  transport/transport.dsp, zeroD/zeroD.dsp: Duplicating existing
	  structure in the new module. However, it's one directory deeper.

2004-08-06 16:09  hkmoffa

	* test_problems/surfkin/surfdemo.cpp: Added a return statement.

2004-08-06 16:00  hkmoffa

	* ext/tpx/ck_gas.h: fixed a few vc++ errors.

2004-08-06 15:54  hkmoffa

	* Cantera/src/ct2ctml.cpp: added some more debugging stuff.

2004-08-06 15:23  hkmoffa

	* ext/f2c_libs/Makefile.in: Fixed an error on cygwin

2004-08-06 14:56  hkmoffa

	* ext/math/Makefile.in: Added the all: target.

2004-08-06 14:53  hkmoffa

	* config/configure.in, configure: Added support for build_with_f2c.

2004-08-06 14:52  hkmoffa

	* ext/: Makefile.in, blas/Makefile.in, cvode/Makefile.in,
	  f2c_blas/Makefile.in, f2c_libs/Makefile.in, f2c_math/Makefile.in,
	  lapack/Makefile.in, tpx/.cvsignore, tpx/Makefile.in: Fixed
	  makefiles within the ext directory.  Added support for
	  build_with_f2c.

2004-08-06 14:50  hkmoffa

	* ext/recipes/Makefile.in: Added a depends rule

2004-08-06 14:31  hkmoffa

	* config/.cvsignore: Added a dir.

2004-08-06 14:29  hkmoffa

	* examples/cxx/.cvsignore: Added more files.

2004-08-06 14:05  hkmoffa

	* tools/templates/f90/.cvsignore: Started this file.

2004-08-06 14:03  dggoodwin

	* Makefile.in: fixed Fortran module install bug

2004-08-06 14:01  hkmoffa

	* Cantera/python/examples/.cvsignore: Added this file.

2004-08-06 14:00  hkmoffa

	* examples/cxx/.cvsignore: Added 3 files.

2004-08-06 13:58  hkmoffa

	* apps/MixMaster/: .cvsignore, Units/.cvsignore: Added *.pyc rule
	  to .cvsignore

2004-08-06 13:56  hkmoffa

	* Cantera/user/.cvsignore: Added Makefile.

2004-08-06 13:55  hkmoffa

	* Cantera/fortran/src/Makefile.in: Changed the suffix rule format.

2004-08-06 13:51  hkmoffa

	* Cantera/src/: ct2ctml.cpp, misc.cpp: Added the "sleep" system
	  command buf fix for the cygwin environment.  Added debugging
	  printouts for the DEFINE DEBUG_PATH.

2004-08-06 13:31  hkmoffa

	* Cantera/src/Makefile.in: Added a commented out capability to turn
	  on DEBUG_PATHS, which is used to debug IO data issues.

2004-08-06 13:29  hkmoffa

	* config.h.in: Added 2 defs:	CYGWIN	  WINMSVC to indicate
	  environments. Used to support putting in sleep commands into
	  ct2ctml.

2004-08-06 13:26  hkmoffa

	* test_problems/: cxx_ex/.cvsignore, surfkin/.cvsignore,
	  surfkin/surfdemo.cpp: Changed required file from gri30.xml to
	  gri30.cti.

2004-08-06 13:25  hkmoffa

	* test_problems/python/.cvsignore: Added a file.

2004-08-06 13:22  hkmoffa

	* config/configure.in: Added a check to see if the fortran 90
	  compiler is available.  Added a few defines to config.h. This is
	  needed to implement the fix to the directory sync problem I found
	  on cygwin.

2004-08-06 08:45  hkmoffa

	* Cantera/src/Makefile.in: Fixed the format of the SUFFIX makefile
	  command.

2004-08-05 14:32  hkmoffa

	* bin/get_arch: Simple shell script to return the architecture. It
	  is to be used on test problems which produce slightly different
	  results on different platforms.

2004-08-05 12:25  hkmoffa

	* ext/cvode/source/nvector.c: Added brackets.

2004-08-05 12:23  hkmoffa

	* ext/math/Makefile.in: Fixed the SUFFIX object

2004-08-05 12:22  hkmoffa

	* ext/math/mach.cpp: Added a _i1mach_ target

2004-08-05 12:16  hkmoffa

	* ext/f2c_blas/Makefile.in: Slight change

2004-08-05 12:15  hkmoffa

	* ext/f2c_math/: .cvsignore, Makefile.in, cblas.h, daux.c,
	  ddaspk.c, dgbefa.c, dgbsl.c, dgefa.c, dgesl.c, dp1vlu.c,
	  dpcoef.c, dpolft.c, fdump.c, gmres.h, idamax.c, j4save.c,
	  mach.cpp, mkl_cblas.h, pcoef.c, polfit.c, pvalue.c, xercnt.c,
	  xerhlt.c, xermsg.c, xerprn.c, xersve.c, xgetua.c: First commit of
	  this directory

2004-08-05 10:51  hkmoffa

	* ext/f2c_blas/blaswrap.h: Added a file.

2004-08-05 10:49  hkmoffa

	* ext/f2c_blas/: .cvsignore, Makefile.in, dasum.c, daxpy.c,
	  dcabs1.c, dcopy.c, ddot.c, dgbmv.c, dgemm.c, dgemv.c, dger.c,
	  dnrm2.c, drot.c, drotg.c, drotm.c, drotmg.c, dsbmv.c, dscal.c,
	  dsdot.c, dspmv.c, dspr.c, dspr2.c, dswap.c, dsymm.c, dsymv.c,
	  dsyr.c, dsyr2.c, dsyr2k.c, dsyrk.c, dtbmv.c, dtbsv.c, dtpmv.c,
	  dtpsv.c, dtrmm.c, dtrmv.c, dtrsm.c, dtrsv.c, dzasum.c, dznrm2.c,
	  idamax.c, isamax.c, lsame.c, xerbla.c: First commit for this
	  directory

2004-08-05 10:24  hkmoffa

	* ext/f2c_lapack/: .cvsignore, Makefile.in, blaswrap.h, dbdsqr.c,
	  dgbrfs.c, dgbsv.c, dgbsvx.c, dgbtf2.c, dgbtrf.c, dgbtrs.c,
	  dgebak.c, dgebal.c, dgebd2.c, dgebrd.c, dgelq2.c, dgelqf.c,
	  dgels.c, dgelsd.c, dgelss.c, dgelsx.c, dgelsy.c, dgeqr2.c,
	  dgeqrf.c, dgetf2.c, dgetrf.c, dgetri.c, dgetrs.c, dlabad.c,
	  dlabrd.c, dlacpy.c, dlamch.c, dlange.c, dlapy2.c, dlarf.c,
	  dlarfb.c, dlarfg.c, dlarft.c, dlartg.c, dlas2.c, dlascl.c,
	  dlaset.c, dlasq1.c, dlasq2.c, dlasq3.c, dlasq4.c, dlasq5.c,
	  dlasq6.c, dlasr.c, dlasrt.c, dlassq.c, dlasv2.c, dlaswp.c,
	  dorg2r.c, dorgbr.c, dorgl2.c, dorglq.c, dorgqr.c, dorm2r.c,
	  dormbr.c, dorml2.c, dormlq.c, dormqr.c, drscl.c, dtrti2.c,
	  dtrtri.c, ieeeck.c, ilaenv.c, lsame.c: First commit of this
	  directory

2004-08-05 10:04  dggoodwin

	* Cantera/fortran/src/cantera_funcs.f90,
	  Cantera/fortran/src/fct.cpp, tools/templates/f90/demo.f90: minor
	  changes to fortran files

2004-08-05 09:42  dggoodwin

	* configure, Cantera/matlab/setup_winmatlab.py,
	  Cantera/src/SpeciesThermoFactory.cpp,
	  Cantera/src/oneD/StFlow.cpp, Cantera/src/oneD/StFlow.h,
	  config/configure, config/configure.in: minor cleanup

2004-08-04 17:18  hkmoffa

	* ext/f2c_libs/: .cvsignore, Makefile.in, abort_.c, arithchk.c,
	  backspac.c, c_abs.c, c_cos.c, c_div.c, c_exp.c, c_log.c, c_sin.c,
	  c_sqrt.c, cabs.c, close.c, d_abs.c, d_acos.c, d_asin.c, d_atan.c,
	  d_atn2.c, d_cnjg.c, d_cos.c, d_cosh.c, d_dim.c, d_exp.c,
	  d_imag.c, d_int.c, d_lg10.c, d_log.c, d_mod.c, d_nint.c,
	  d_prod.c, d_sign.c, d_sin.c, d_sinh.c, d_sqrt.c, d_tan.c,
	  d_tanh.c, derf_.c, derfc_.c, dfe.c, dolio.c, dtime_.c, due.c,
	  ef1asc_.c, ef1cmc_.c, endfile.c, erf_.c, erfc_.c, err.c,
	  etime_.c, exit_.c, f2c.h, f2c.h0, f2ch.add, f77_aloc.c,
	  f77vers.c, fio.h, fmt.c, fmt.h, fmtlib.c, fp.h, ftell64_.c,
	  ftell_.c, getarg_.c, getenv_.c, h_abs.c, h_dim.c, h_dnnt.c,
	  h_indx.c, h_len.c, h_mod.c, h_nint.c, h_sign.c, hl_ge.c, hl_gt.c,
	  hl_le.c, hl_lt.c, i77vers.c, i_abs.c, i_dim.c, i_dnnt.c,
	  i_indx.c, i_len.c, i_mod.c, i_nint.c, i_sign.c, iargc_.c, iio.c,
	  ilnw.c, inquire.c, l_ge.c, l_gt.c, l_le.c, l_lt.c, lbitbits.c,
	  lbitshft.c, lio.h, lread.c, lwrite.c, main.c, open.c, pow_ci.c,
	  pow_dd.c, pow_di.c, pow_hh.c, pow_ii.c, pow_qq.c, pow_ri.c,
	  pow_zi.c, pow_zz.c, qbitbits.c, qbitshft.c, r_abs.c, r_acos.c,
	  r_asin.c, r_atan.c, r_atn2.c, r_cnjg.c, r_cos.c, r_cosh.c,
	  r_dim.c, r_exp.c, r_imag.c, r_int.c, r_lg10.c, r_log.c, r_mod.c,
	  r_nint.c, r_sign.c, r_sin.c, r_sinh.c, r_sqrt.c, r_tan.c,
	  r_tanh.c, rawio.h, rdfmt.c, rewind.c, rsfe.c, rsli.c, rsne.c,
	  s_cat.c, s_cmp.c, s_copy.c, s_paus.c, s_rnge.c, s_stop.c, sfe.c,
	  sig_die.c, signal1.h0, signal_.c, signbit.c, sue.c, sysdep1.h0,
	  system_.c, typesize.c, uio.c, uninit.c, util.c, wref.c, wrtfmt.c,
	  wsfe.c, wsle.c, wsne.c, xwsne.c, z_abs.c, z_cos.c, z_div.c,
	  z_exp.c, z_log.c, z_sin.c, z_sqrt.c: First commit of f2c library
	  directory

2004-08-04 16:57  hkmoffa

	* ext/f2c_recipes/: .cvsignore, Makefile.in, simp1.c, simp2.c,
	  simp3.c, simplx.c, splie2.c, splin2.c, spline.c, splint.c:
	  Initial commit of this directory. -> f2c option

2004-08-04 04:21  dggoodwin

	* Cantera/fortran/src/: cantera_xml.f90, fctxml_interface.f90,
	  genf.py: XML module

2004-08-03 13:49  hkmoffa

	* bin/rm_cvsignore: Added runtest to the list of files not to
	  whack.

2004-08-03 13:21  hkmoffa

	* test_problems/Makefile.in: Added endif's. This was causing an
	  error exit.

2004-08-03 09:32  dggoodwin

	* test_problems/silane_equil/output_blessed.txt: updated blessed
	  file due to change in warning output format

2004-08-03 09:15  dggoodwin

	* test_problems/: Makefile.in, python/.cvsignore,
	  python/Makefile.in, python/diamond_blessed.csv,
	  python/flame1_blessed.csv, python/runtest: added Python test
	  problems

2004-08-03 08:18  dggoodwin

	* Cantera/python/Cantera/OneD/BurnerDiffFlame.py: burner-stabilized
	  flame with reservoir outlet condition

2004-08-03 04:16  dggoodwin

	* Makefile.in, configure, Cantera/cxx/src/writelog.cpp,
	  Cantera/matlab/cantera/ck2cti.m,
	  Cantera/matlab/cantera/private/write.cpp,
	  Cantera/python/src/writelog.cpp, Cantera/src/global.h,
	  config/configure, config/configure.in: cleanup

2004-08-03 03:36  dggoodwin

	* Cantera/src/: IdealGasThermo.cpp, ImplicitChem.cpp, Makefile.in,
	  SolidCompound.cpp, importSurfChem.cpp, surfKinetics.cpp: cleanup

2004-08-03 02:18  dggoodwin

	* win32/README: Initial revision

2004-08-03 02:18  dggoodwin

	* win32/README: initial import

2004-08-03 02:09  dggoodwin

	* Cantera/src/: Constituents.cpp, DenseMatrix.h, EOS_TPX.h,
	  EdgePhase.h, GRI30.h, IdealGasThermo.h, InterfaceKinetics.cpp,
	  Makefile.in, NasaThermo.h, ReactionData.h, Resid.h, RxnRates.h,
	  ShomateThermo.h, SimpleThermo.h, SolidCompound.h,
	  SpeciesThermo.h, SpeciesThermoFactory.cpp, SpeciesThermoMgr.h,
	  StoichManager.h, exceptions.h, fitPoly.h, pureSubstances.h,
	  surfKinetics.h, transportModels.h, xml.cpp: removed unused files

2004-08-01 14:33  dggoodwin

	* Cantera/fortran/src/fctxml.cpp: initial import

2004-08-01 09:43  dggoodwin

	* Cantera/matlab/cantera/@ThermoPhase/speciesIndex.m: added support
	  for cell arrays of species names

2004-08-01 09:43  dggoodwin

	* Cantera/matlab/cantera/@ThermoPhase/elementIndex.m: added support
	  for cell arrays of element names

2004-07-30 05:26  dggoodwin

	* Cantera/matlab/cantera/@ThermoPhase/elementName.m: fixed bug

2004-07-29 15:31  dggoodwin

	* Cantera/src/: RateCoeffMgr.h, RxnRates.h, reaction_defs.h,
	  oneD/boundaries1D.cpp, zeroD/ReactorNet.cpp: added ArrheniusSum
	  class

2004-07-29 15:22  dggoodwin

	* Cantera/python/src/: ctreactor_methods.cpp, methods.h: removed
	  time() methods for class Reactor and added them to class
	  ReactorNet

2004-07-29 15:21  dggoodwin

	* Cantera/python/Cantera/Reactor.py: removed method Reactor.time(),
	  and added ReactorNet.time()

2004-07-29 15:14  hkmoffa

	* test_problems/: Makefile.in, ck2cti_test/Makefile.in,
	  cxx_ex/Makefile.in, cxx_ex/gri30.xml, diamondSurf/Makefile.in,
	  silane_equil/.cvsignore, silane_equil/Makefile.in,
	  silane_equil/silane_equil.cpp, surfkin/Makefile.in: Added depends
	  target to makefiles

2004-07-29 14:43  hkmoffa

	* test_problems/diamondSurf/: .cvsignore, Makefile.in: Added a
	  depends target

2004-07-28 16:44  hkmoffa

	* config/configure.in: Added support for ck2cti_test

2004-07-28 16:40  hkmoffa

	* test_problems/ck2cti_test/: .cvsignore, Makefile.in, gri30.inp,
	  gri30_tran.dat, gri30a_blessed.cti, runtest.in: Adding another
	  test to cover ck parser

2004-07-28 16:36  hkmoffa

	* test_problems/surfkin/: .cvsignore, Makefile.in: Added a depends
	  capability

2004-07-26 16:12  dggoodwin

	* Cantera/python/src/methods.h: removed unused bndry functions

2004-07-26 08:58  hkmoffa

	* Cantera/src/: NasaThermo.h, ShomateThermo.h: Removed the at()
	  function for vectors. gcc v2.95 does not support this function.

2004-07-21 13:41  hkmoffa

	* Cantera/src/: ThermoFactory.h, misc.cpp: Took the deletion of a
	  static pointer out of destructor.

2004-07-16 17:18  hkmoffa

	* Cantera/src/: ConstDensityThermo.h, NasaPoly1.h, NasaThermo.h,
	  PolyThermoMgr.h, ShomatePoly.h, ShomateThermo.h, SimpleThermo.h,
	  SpeciesThermo.h, SpeciesThermoMgr.h, StoichSubstance.cpp,
	  StoichSubstance.h, ThermoPhase.h:  Added "getParameter" routines
	  to most of the species and phase
	   thermo objects.

	   Fixed a bug in NasaThermo::update_one() and
	  ShomateThermo::update_one()
	   that occurred because m_low_map and m_high_map contained bad
	   information. They were maps to fixed pointers, but the location
	  of the
	   objects that they referred to changed during vector resizing
	  operations.

2004-07-12 07:58  hkmoffa

	* Cantera/clib/src/: ct.cpp, ctonedim.cpp: static_cast to eliminate
	  warnings from msvc.

2004-07-12 07:57  hkmoffa

	* Cantera/clib/src/Storage.cpp: Static casts to eliminates warnings
	  from msvc

2004-07-12 07:57  hkmoffa

	* Cantera/clib/src/Cabinet.h: Static_casts to eliminate warnings
	  from msvc.

2004-07-08 13:32  hkmoffa

	* Cantera/src/StoichSubstance.cpp: Fixed an error that was making
	  the diamond test problem fail.

2004-07-08 13:32  hkmoffa

	* test_problems/diamondSurf/diamond_blessed.xml: Updated file so
	  test would pass

2004-07-08 13:14  hkmoffa

	* test_problems/silane_equil/output_blessed.txt: Updated blessed
	  file.

2004-07-08 11:14  hkmoffa

	* Cantera/src/: InterfaceKinetics.cpp, InterfaceKinetics.h: Added
	  more comments. -> only formatting.

2004-07-08 11:12  hkmoffa

	* Cantera/src/Group.cpp: only formatting.

2004-07-08 11:11  hkmoffa

	* Cantera/src/units.h: Fixed an error that I recently introduced in
	  using size_types.

2004-07-08 11:10  hkmoffa

	* Cantera/src/ctml.cpp: Fixed errors that I recently introduced in
	  using size_types.

2004-07-08 11:09  hkmoffa

	* Cantera/src/misc.cpp: Fixed an error that I recently introduced
	  in using size_types

2004-07-08 11:07  hkmoffa

	* Cantera/src/stringUtils.cpp: Fixed an error that I recently
	  introduced in using size_types.

2004-07-08 11:03  hkmoffa

	* Cantera/src/GasKinetics.h: Added more initializations

2004-07-08 09:08  hkmoffa

	* Cantera/src/misc.cpp: Fixed an error that I introduced. Must
	  always check string::size_type against string::npos.

2004-07-02 10:34  hkmoffa

	* Cantera/src/converters/CKParser.cpp: Eliminated warnings due to
	  signed and unsigned comparisons.

2004-07-02 10:28  hkmoffa

	* Cantera/src/converters/CKReader.cpp: static_cast to eliminate
	  VC++ warnings.

2004-07-02 10:27  hkmoffa

	* Cantera/src/converters/CKParser.cpp: static_casts to eliminate
	  VC++ warnings.

2004-07-02 10:25  hkmoffa

	* Cantera/src/converters/ck2ct.cpp: fixed file names for include
	  files.  static_cast to eliminate VC++ warnigns.

2004-07-02 10:24  hkmoffa

	* Cantera/src/converters/ckr_utils.cpp: static_cast to eliminate
	  VC++ warnings.

2004-07-02 10:23  hkmoffa

	* Cantera/src/converters/ckr_defs.h: Corrected file locations for
	  include files.

2004-07-02 10:21  hkmoffa

	* Cantera/src/converters/: writelog.cpp, filter.cpp, Reaction.cpp:
	  static_cast to eliminate VC++ warnings.

2004-07-02 10:20  hkmoffa

	* Cantera/src/converters/ck2ctml.cpp: Corrected file locations of
	  include files.  static_cast to eliminate VC++ warnings.

2004-07-02 10:19  hkmoffa

	* Cantera/src/converters/ck2ctml.h: Corrected file locations of
	  include files.

2004-07-02 09:48  hkmoffa

	* Cantera/src/converters/: CKParser.cpp, CKParser.h: Moved
	  CK_SyntaxError definition to the .h file. It's used in more than
	  one .cpp file.

2004-07-02 09:47  hkmoffa

	* Cantera/src/converters/filter.cpp: split long lines.

2004-07-02 09:14  hkmoffa

	* Cantera/src/zeroD/FlowDevice.cpp: Corrected file location of
	  include file.

2004-07-02 09:13  hkmoffa

	* Cantera/src/zeroD/ReactorBase.cpp: static_cast to eliminate VC++
	  warnings.

2004-07-02 09:12  hkmoffa

	* Cantera/src/zeroD/Wall.cpp: Correct file location of include
	  file.

2004-07-02 09:05  hkmoffa

	* Cantera/src/transport/TransportFactory.cpp: Corrected file
	  locations of include files.  static_cast to eliminate VC++
	  warnings.

2004-07-02 09:04  hkmoffa

	* Cantera/src/transport/MultiTransport.cpp: static_cast to
	  eliminate VC++ warnings.

2004-07-02 09:02  hkmoffa

	* Cantera/src/transport/MMCollisionInt.cpp: commented out a
	  variable that wasn't used.

2004-07-02 09:01  hkmoffa

	* Cantera/src/transport/: L_matrix.h, MixTransport.cpp: Corrected
	  the file location of include files.

2004-07-02 08:59  hkmoffa

	* Cantera/src/transport/: TransportParams.h, SolidTransport.cpp:
	  Corrected the file locations of include files.

2004-07-02 08:29  hkmoffa

	* Cantera/src/oneD/MultiNewton.cpp: static_cast to eliminate VC++
	  warnings.

2004-07-02 08:27  hkmoffa

	* Cantera/src/oneD/OneDim.cpp: Static_cast to eliminate VC++
	  warnings.

2004-07-02 08:26  hkmoffa

	* Cantera/src/oneD/: Sim1D.cpp, StFlow.cpp: static_cast to
	  eliminate VC++ warnings.

2004-07-02 08:23  hkmoffa

	* Cantera/src/oneD/refine.cpp: Static_cast to eliminate VC++
	  warnings.

2004-07-02 08:21  hkmoffa

	* Cantera/src/oneD/refine.h: static_cast to eliminate warning in
	  VC++

2004-07-02 08:20  hkmoffa

	* Cantera/src/oneD/Solid1D.cpp: Fixed one Error in file not part of
	  the distribution

2004-07-02 08:19  hkmoffa

	* Cantera/src/oneD/Solid1D.h: Fixed one error in a file not yet
	  part of distribution.

2004-07-02 07:58  hkmoffa

	* Cantera/src/DASPK.cpp: Fixed an error in a calling routine.

	  Fixed an error involving passing a pointer through an integer
	  array, when the length of the pointer is longer than the length
	  of a single integer. Basically, you have to cast first to the
	  longer variable, before assigning.

2004-07-02 07:48  hkmoffa

	* Cantera/src/SpeciesThermoFactory.cpp: static_cast to eliminate
	  VC++ warnings.

2004-07-02 07:47  hkmoffa

	* Cantera/src/misc.cpp: static_cast and size_type to eliminate VC++
	  warnings.

2004-07-02 07:46  hkmoffa

	* Cantera/src/importCTML.cpp: static_cast to eliminate VC++ warning
	  messages.

2004-07-02 07:45  hkmoffa

	* Cantera/src/ImplicitSurfChem.cpp: static_cast to eliminate VC++
	  warning message.

2004-07-02 07:44  hkmoffa

	* Cantera/src/ImplicitChem.h: Changed the name of a routine, to get
	  it to compile. However, I don't think this is part of the
	  distribution.

2004-07-02 07:43  hkmoffa

	* Cantera/src/surfKinetics.h: changed the name of an include file.
	  however, I think this is no longer part of the distribution.

2004-07-02 07:42  hkmoffa

	* Cantera/src/ReactionPath.cpp: static_cast to eliminate warning
	  messages.

2004-07-02 07:41  hkmoffa

	* Cantera/src/ctml.cpp: static cast and size_type to eliminate VC++
	  warning messages.

2004-07-02 07:39  hkmoffa

	* Cantera/src/: stringUtils.cpp, ReactionPath.h: static_cast to
	  eliminate VC++ warning messages.

2004-07-01 16:58  hkmoffa

	* Cantera/src/GasKinetics.cpp: static_cast to eliminate VC++
	  warnings.

2004-07-01 16:54  hkmoffa

	* Cantera/src/: ArrayViewer.h, Kinetics.h: static_cast to eliminate
	  VC++ warnings.

2004-07-01 16:50  hkmoffa

	* Cantera/src/StoichManager.h: static_cast to eliminate VC++
	  warnings.

2004-07-01 16:47  hkmoffa

	* Cantera/src/: NasaThermo.h, ShomateThermo.h, RateCoeffMgr.h,
	  ThirdBodyMgr.h: static_cast to eliminate VC++ warnings.

2004-07-01 16:46  hkmoffa

	* Cantera/src/plots.cpp: static_casts to eliminate VC++ warnings.

2004-07-01 16:46  hkmoffa

	* Cantera/src/units.h: small changes to eliminate VC++ warnings.

2004-07-01 16:40  hkmoffa

	* Cantera/src/DenseMatrix.cpp: static_cast to eliminate VC++
	  warnings

2004-07-01 16:35  hkmoffa

	* Cantera/src/: Group.cpp, Group.h: Fixed an error that turned up
	  in VC++.  I think the problem was that VC++ didn't allow friend
	  functions to be defined in the body of declarations in .h files.

2004-07-01 16:26  hkmoffa

	* Cantera/src/Elements.cpp: static cast added to avoid VC++
	  compiler warning.

2004-07-01 16:25  hkmoffa

	* Cantera/src/Array.h: static_cast added to avoid VC++ compiler
	  issues.

2004-07-01 16:22  hkmoffa

	* Cantera/src/xml.cpp: VC++ warnings were taken out

2004-07-01 16:12  hkmoffa

	* Cantera/src/xml.h: Added static_cast to remove VC++ compiler
	  warning.

2004-06-30 15:30  hkmoffa

	* Cantera/src/ImplicitChem.cpp: Fixed an error with a calling
	  statement.

2004-06-30 14:08  hkmoffa

	* Cantera/src/ResidEval.h: Fixed a compiler error that showed up
	  VC++

2004-06-28 16:51  hkmoffa

	* Cantera/src/Phase.h: Set m_xml to zero after deletion.

2004-06-28 16:49  hkmoffa

	* Cantera/src/importCTML.h: Added the installSpecies() declaration
	  back in. This is needed for the particle species thermo object.
	  It's in the cpp file, but just not declared here.

2004-06-28 16:47  hkmoffa

	* Cantera/src/SpeciesThermoFactory.cpp: Added a few throw
	  statements that was missing.	Added a throw UnknownSpeciesThermo
	  statement for cases where the complete thermo block is missing.
	  This is necessary for particle species object to function.

2004-06-17 10:49  dggoodwin

	* Cantera/src/PureFluidPhase.cpp: initial import

2004-06-16 14:55  dggoodwin

	* Cantera/src/GasKinetics.cpp: changed call to
	  ReactionStoichMgr::add so that non-integral reaction orders are
	  correctly processed.

2004-06-08 17:59  dggoodwin

	* Cantera/src/: ConstDensityThermo.cpp, ConstDensityThermo.h,
	  Constituents.cpp, Constituents.h, EdgePhase.h, Elements.h,
	  Makefile.in, PureFluidPhase.h, SpeciesThermoFactory.cpp,
	  SpeciesThermoFactory.h, StoichSubstance.cpp, StoichSubstance.h,
	  SurfPhase.cpp, SurfPhase.h, ThermoFactory.cpp, ThermoPhase.cpp,
	  ThermoPhase.h, importCTML.cpp, importCTML.h, xml.cpp, xml.h,
	  zeroD/Wall.h: moved functions to read XML input files out of
	  importCTML.cpp and into specific classes

2004-06-06 15:02  dggoodwin

	* Cantera/src/Elements.cpp: moved reading of xml element data to
	  Elements.cpp

2004-06-03 22:19  dggoodwin

	* Makefile.in, configure, Cantera/matlab/setup_winmatlab.py,
	  Cantera/python/Cantera/DustyGasTransport.py,
	  Cantera/python/Cantera/Func.py,
	  Cantera/python/Cantera/Interface.py,
	  Cantera/python/Cantera/Phase.py,
	  Cantera/python/Cantera/Reactor.py,
	  Cantera/python/Cantera/ThermoPhase.py,
	  Cantera/python/Cantera/Transport.py,
	  Cantera/python/Cantera/importFromFile.py,
	  Cantera/python/src/ctreactor_methods.cpp,
	  Cantera/src/ct2ctml.cpp, config/configure, config/configure.in,
	  test_problems/cxx_ex/gri30.xml, test_problems/cxx_ex/silane.xml:
	  added comments

2004-06-02 21:01  dggoodwin

	* Cantera/python/Cantera/importFromFile.py: added comments

2004-06-02 20:44  dggoodwin

	* Cantera/python/Cantera/Interface.py: added comments

2004-06-02 05:57  dggoodwin

	* Cantera/python/: Cantera/Func.py, Cantera/Phase.py,
	  Cantera/ThermoPhase.py, examples/reactor1.py,
	  examples/reactor2.py: minor cleanup

2004-06-01 21:39  dggoodwin

	* Cantera/python/: Makefile.in, ctml_writer.py, setup.py.in: moved
	  ctml_writer.py out of Cantera package

2004-05-29 21:04  dggoodwin

	* Cantera/src/oneD/: Sim1D.cpp, refine.cpp: fixed problem with
	  continuing beyond max number of points

2004-05-29 21:02  dggoodwin

	* Cantera/python/Cantera/ctml_writer.py: converted to pure python

2004-05-23 17:08  dggoodwin

	* Cantera/matlab/cantera/: @Reactor/private/reactormethods.cpp,
	  @Transport/private/newTransport.cpp,
	  @Transport/private/trans_methods.cpp,
	  @Wall/private/wallmethods.cpp, @XML_Node/private/newxml.cpp,
	  @XML_Node/private/xmlmethods.cpp: removed unused files

2004-05-23 17:05  dggoodwin

	* Cantera/matlab/cantera/@Kinetics/private/: delkinetics.cpp,
	  isrev.cpp, kin_get.cpp, kin_set.cpp, newkinetics.cpp,
	  production.cpp, pstoich.cpp, rop.cpp, rstoich.cpp, rxnstring.cpp:
	  removed unused files

2004-05-21 20:52  dggoodwin

	* Cantera/python/tutorial/: tut2.py, tut3.py, tut4.py: updated
	  tutorials

2004-05-21 11:09  dggoodwin

	* Cantera/src/transport/MMCollisionInt.cpp: fixed bug in which
	  upper T* limit was incorrect in fits if T*max > 100, as with
	  helium.

2004-05-17 16:22  dggoodwin

	* config/configure.in: added test for sstream

2004-05-17 15:59  dggoodwin

	* Cantera/matlab/cantera/@ReactorNet/: addReactor.m, atol.m,
	  rtol.m, setInitialTime.m, setMaxTimeStep.m, setTolerances.m,
	  time.m: initial import

2004-05-17 09:23  dggoodwin

	* test_problems/cxx_ex/: kin1_blessed.csv, kin2_blessed.csv:
	  reverted to previus version due to error in last versions

2004-05-16 06:54  dggoodwin

	* Cantera/src/: CVode.cpp, CVode.h, Integrator.h: changed
	  setMaxStep to setMaxStepSize, setMinStep to setMinStepSize, and
	  added setMaxSteps to set the maximum number of steps that will be
	  taken.

2004-05-14 20:19  dggoodwin

	* Cantera/python/examples/critProperties.py: added example of
	  computing critical-state properties

2004-05-14 14:15  dggoodwin

	* Cantera/src/transport/: MultiTransport.h, MultiTransport.cpp:
	  added ability to compute mixture-averaged diffusion coefficients
	  in class MultiTransport.

2004-05-13 10:52  dggoodwin

	* ChangeLog: log file generated from CVS log output by perl script
	  cvs2cl.pl

2004-05-13 10:45  dggoodwin

	* Cantera/src/converters/CKParser.cpp: fixed bug in which a species
	  name beginning with M was interpreted as a third body

2004-04-24 08:44  dggoodwin

	* configure, Cantera/matlab/setup_winmatlab.py,
	  Cantera/python/Cantera/Func.py,
	  Cantera/python/Cantera/Reactor.py,
	  Cantera/python/examples/catcomb.py,
	  Cantera/python/examples/diamond.py,
	  Cantera/python/examples/dustygas.py,
	  Cantera/python/examples/flame1.py,
	  Cantera/python/examples/isentropic.py,
	  Cantera/python/examples/mix1.py, Cantera/python/examples/mix2.py,
	  Cantera/python/examples/reactor1.py,
	  Cantera/python/examples/reactor2.py, data/inputs/diamond.cti:
	  updated examples

2004-04-24 05:55  dggoodwin

	* Cantera/matlab/cantera/: @ReactorNet/ReactorNet.m,
	  @ReactorNet/advance.m, @ReactorNet/reactornet_hndl.m,
	  @ReactorNet/step.m, @ReactorNet/private/reactornetmethods.m,
	  private/reactornetmethods.cpp: initial import

2004-04-24 05:50  dggoodwin

	* test_problems/: cxx_ex/kin1_blessed.csv, cxx_ex/kin2_blessed.csv,
	  silane_equil/output_blessed.txt: updated blessed files due to
	  slight change in how Nasa polynomial thermo properties computed

2004-04-23 14:02  hkmoffa

	* Cantera/src/surfKinetics.cpp: Call to the baseclass init()
	  function from init()

2004-04-23 13:37  hkmoffa

	* Cantera/src/GasKinetics.cpp: Cosmetic -> changed args to fall
	  after (

2004-04-23 13:36  hkmoffa

	* Cantera/src/PureFluidPhase.h: Added a header.

2004-04-23 12:55  hkmoffa

	* Cantera/src/: importCTML.cpp, importCTML.h: Made
	  checkRxnElementBalance global scoped, so that it could be used in
	  cads package.

2004-04-23 12:05  hkmoffa

	* Cantera/src/importCTML.cpp: Strictly formatting-   broke up long
	  lines   added a few comments.

2004-04-23 12:03  hkmoffa

	* Cantera/src/importCTML.h: Added prototypes for 2 functions.

2004-04-23 10:35  hkmoffa

	* Cantera/fortran/src/Makefile.in: Changed libfct.a.a to libfct.a

2004-04-23 10:17  hkmoffa

	* Cantera/fortran/f77demos/.cvsignore: Added 2 generated files.

2004-04-23 10:13  hkmoffa

	* Cantera/fortran/src/fct.cpp: Changed a getMassFractions() call
	  from 2 args to 1 arg. The old method had been taken out of
	  State.h. And, this file had not been subsequently updated.

2004-04-23 09:42  hkmoffa

	* Cantera/matlab/.cvsignore: Added setup_matlab.py, this is a
	  generated file.

2004-04-23 09:41  hkmoffa

	* Cantera/src/.cvsignore: Added config.h

2004-04-23 09:34  dggoodwin

	* Cantera/src/importCTML.cpp: added function
	  checkRxnElementBalance, and modified importReaction to call it
	  before adding a reaction to check that it is balanced.

2004-04-22 15:59  hkmoffa

	* config/: configure, configure.in: Added python_prefix capability.
	  Can now install site-packages into a different directory than the
	  Cantera install directory.  Added a particles section that
	  shouldn't be turned on.

2004-04-22 15:54  hkmoffa

	* .cvsignore: Added a file.

2004-04-22 15:43  hkmoffa

	* Makefile.in: Making sure that build_particles=0 turns off going
	  to cads directory

2004-04-22 15:42  hkmoffa

	* configure: Added a python_prefix capability that allows one to
	  put python site packages in a different spot than cantera
	  installation files.

2004-04-22 14:50  hkmoffa

	* tools/src/.cvsignore: Added 2 files.

2004-04-22 14:33  hkmoffa

	* Cantera/python/Makefile.in: Part of separating python prefix from
	  prefix.

2004-04-22 14:28  hkmoffa

	* Makefile.in: Added installs for a few more files from demo
	  directory.  -> including Makefile.install -> Makefile

2004-04-22 14:14  hkmoffa

	* Cantera/cxx/: Makefile.in, demos/Makefile.in,
	  demos/Makefile.install: Ok, think I fixed it. Added a demo
	  results and added Makefile back into repository so that demo
	  problems run correctly in both directories (and give the same
	  result).

2004-04-22 12:49  hkmoffa

	* Cantera/cxx/demos/Makefile.in: Fixed an error in the clean rule.

2004-04-22 12:46  hkmoffa

	* config/configure.in: Fixed a typo.

2004-04-22 12:44  hkmoffa

	* config/: configure, configure.in: Added 2 directories to the list
	  of Makefiles to be created.

2004-04-22 12:42  hkmoffa

	* Cantera/cxx/: Makefile.in, demos/.cvsignore, demos/Makefile,
	  demos/Makefile.in, demos/kin1_blessed.csv,
	  demos/kin1_blessed.dat, src/.cvsignore, src/Makefile.in,
	  src/cxxutils.cpp, src/writelog.cpp: Added a small demo.  Added
	  comments.

2004-04-22 12:06  hkmoffa

	* Cantera/matlab/cantera/.cvsignore: Added ctbin.m

2004-03-18 05:26  dggoodwin

	* Cantera/matlab/cantera/@ThermoPhase/: setState_Psat.m,
	  setState_Tsat.m: initial import

2004-03-12 19:25  dggoodwin

	* Cantera/src/Phase.cpp: bug fixedin setMassFractionsByName

2004-02-22 21:47  dggoodwin

	* Cantera/matlab/cantera/@Func/: char.m, display.m, plus.m,
	  rdivide.m, subsref.m, times.m, private/funcmethods.m: initial
	  import

2004-02-02 19:33  dggoodwin

	* Cantera/src/: EdgePhase.h, EdgeKinetics.cpp, EdgeKinetics.h:
	  initial import

2004-01-30 15:14  hkmoffa

	* Cantera/clib/src/Makefile.in: Added an all: rule. The end effect
	  is that the library isn't archived when there isn't any need to.

2004-01-30 10:27  hkmoffa

	* configure: Small change to all presetting end libs.

2004-01-14 08:30  hkmoffa

	* test_problems/cxx_ex/: gri30.xml, kin1_blessed.csv,
	  kin2_blessed.csv: Changed the blessed files. There was a small
	  change in the actual answer.

2004-01-14 08:03  hkmoffa

	* test_problems/surfkin/surface.xml: Changed the xml file to have
	  the same element ordering as the gri file's elements.

2004-01-14 08:00  hkmoffa

	* test_problems/diamondSurf/: diamond.cti, diamond_blessed.xml,
	  tdia_a.py: changed the cti file so that the elements of all
	  phases were ordered the same.

2004-01-11 04:57  dggoodwin

	* Cantera/cxx/demos/: Makefile, kinetics1.cpp: initial import

2004-01-05 09:01  dggoodwin

	* Cantera/cxx/demos/: example_utils.h, kinetics1.cpp: initial
	  import

2004-01-04 06:40  dggoodwin

	* Cantera/src/: config.h, ct2ctml.cpp: changed check.py to
	  .check.py

2004-01-01 17:02  dggoodwin

	* test_problems/: cxx_ex/Makefile.in, cxx_ex/runtest,
	  diamondSurf/runtest, silane_equil/runtest, surfkin/runtest: added
	  definition of CANTERA_DATA

2004-01-01 15:41  dggoodwin

	* Cantera/cxx/src/Makefile.in: initial import

2004-01-01 15:39  dggoodwin

	* Makefile.in, config/configure, config/configure.in: cleanup

2004-01-01 15:26  dggoodwin

	* include/: Cantera.h, GRI30.h, IdealGasMix.h, Interface.h, README,
	  ctml.h, equilibrium.h, integrators.h, kinetics.h, numerics.h,
	  onedim.h, reactionpaths.h, surface.h, transport.h, zerodim.h:
	  files moved to Cantera/cxx/include

2004-01-01 15:13  dggoodwin

	* Cantera/cxx/: cxxutils.cpp, writelog.cpp, src/cxxutils.cpp,
	  src/writelog.cpp: innitial import

2004-01-01 15:11  dggoodwin

	* Cantera/: README.txt, cxx/include/Cantera.h, cxx/include/GRI30.h,
	  cxx/include/IdealGasMix.h, cxx/include/Interface.h,
	  cxx/include/equilibrium.h, cxx/include/integrators.h,
	  cxx/include/kinetics.h, cxx/include/numerics.h,
	  cxx/include/onedim.h, cxx/include/reactionpaths.h,
	  cxx/include/surface.h, cxx/include/transport.h,
	  cxx/include/zerodim.h, src/Makefile.in, src/ct2ctml.cpp: initial
	  import

2004-01-01 11:56  dggoodwin

	* configure, Cantera/src/MMCollisionInt.cpp,
	  Cantera/src/Makefile.in, Cantera/src/MixTransport.cpp,
	  Cantera/src/Newton.h, Cantera/src/PropertyUpdater.h,
	  Cantera/src/misc.cpp, include/Cantera.h, include/README,
	  include/config.h, include/ftn_defs.h: cleanup

2003-12-31 00:38  dggoodwin

	* Makefile.in: -

2003-12-31 00:31  dggoodwin

	* Makefile.in: -

2003-12-31 00:27  dggoodwin

	* tools/Makefile.in: added build_ck

2003-12-31 00:14  dggoodwin

	* Cantera/src/ct2ctml.cpp: removed #include pypath.h

2003-12-31 00:04  dggoodwin

	* Makefile.in: -

2003-12-22 06:41  dggoodwin

	* config/: configure, configure.in, testpch.h: initial import

2003-12-22 06:30  dggoodwin

	* Makefile.in, config.h, Cantera/clib/src/ct.h,
	  Cantera/clib/src/ctonedim.cpp, Cantera/matlab/setup_matlab.py,
	  Cantera/matlab/cantera/buildwin.m,
	  Cantera/matlab/cantera/private/transportmethods.cpp,
	  Cantera/src/BandMatrix.cpp, Cantera/src/DenseMatrix.cpp,
	  Cantera/src/config.h, Cantera/src/oneD/boundaries1D.cpp,
	  config/configure, config/configure.in: updated Windows build
	  procedure

2003-12-20 10:03  hkmoffa

	* Cantera/src/transport/MixTransport.cpp: Fix to getDiffusion in
	  order to avoid a NAN result for m_nsp = 1 case and for mixtures
	  with X_i=1.0.

2003-12-20 09:53  hkmoffa

	* tools/testtools/csvdiff.cpp: Fixed 2 things:	 stripped column
	  names   checked for zero title lines

2003-12-20 04:12  dggoodwin

	* Cantera/src/ChemEquil.cpp, examples/cxx/equil_example1.cpp,
	  test_problems/cxx_ex/eq1_blessed.csv,
	  test_problems/cxx_ex/eq1_blessed.dat: changed problem parameters
	  to keep T in range

2003-12-20 04:06  dggoodwin

	* test_problems/cxx_ex/eq1_blessed.csv,
	  test_problems/cxx_ex/eq1_blessed.dat,
	  test_problems/silane_equil/output_blessed.txt,
	  test_problems/silane_equil/silane_equil.cpp,
	  examples/cxx/equil_example1.cpp: changed problem parameters to
	  keep T in range

2003-12-20 03:43  dggoodwin

	* tools/templates/cxx/demo.cpp: changed example parameters

2003-12-20 03:39  dggoodwin

	* tools/templates/cxx/demo.cpp: changed example parameters

2003-12-20 03:35  dggoodwin

	* Makefile.in, Cantera/src/ChemEquil.cpp: minor cleanup

2003-12-19 21:09  dggoodwin

	* config.h, Cantera/matlab/setup_matlab.py, Cantera/src/config.h,
	  tools/Makefile.in, tools/src/finish_install.py.in,
	  tools/templates/cxx/demo.cpp: -

2003-12-19 21:08  dggoodwin

	* Cantera/src/ChemEquil.cpp: fixed temperature limits

2003-12-15 00:54  dggoodwin

	* config.h, Cantera/matlab/setup_matlab.py,
	  Cantera/src/Makefile.in, Cantera/src/config.h,
	  tools/bin/finish_install.py: -

2003-12-13 14:58  dggoodwin

	* Cantera/src/misc.cpp: -

2003-12-13 06:35  dggoodwin

	* INSTALLING, Makefile.in, Cantera/clib/src/ct.cpp,
	  Cantera/matlab/setup_matlab.py,
	  Cantera/matlab/setup_matlab.py.in,
	  Cantera/matlab/cantera/@Solution/set.m,
	  Cantera/python/setup.py.in, Cantera/src/BandMatrix.cpp,
	  Cantera/src/Makefile.in, Cantera/src/SurfPhase.h,
	  Cantera/src/importCTML.cpp, Cantera/src/importCTML.h,
	  Cantera/src/utilities.h, config/configure, config/configure.in,
	  data/inputs/Makefile.in, data/inputs/gri30.xml,
	  ext/tpx/Hydrogen.cpp, ext/tpx/Oxygen.cpp,
	  tools/bin/finish_install.py: cleanup

2003-12-13 06:08  dggoodwin

	* test_problems/cxx_ex/: gri30.xml, kin1_blessed.csv,
	  kin2_blessed.csv, tr2_blessed.csv: rebaselined

2003-12-12 09:03  dggoodwin

	* Cantera/matlab/setup_matlab.py.in: -

2003-12-12 08:51  dggoodwin

	* Cantera/matlab/cantera/private/: reactormethods.cpp,
	  flowdevicemethods.cpp, wallmethods.cpp: -

2003-12-12 08:46  dggoodwin

	* config/configure, config/configure.in,
	  Cantera/matlab/setup_matlab.py.in: -

2003-12-12 08:44  dggoodwin

	* Cantera/matlab/setup_matlab.py.in: initial import

2003-12-12 08:28  dggoodwin

	* config/: configure, configure.in: -

2003-12-12 08:18  dggoodwin

	* Cantera/: matlab/Makefile.in, python/setup.py.in,
	  python/Makefile.in: removed libconverters dependency

2003-12-12 08:15  dggoodwin

	* Cantera/clib/src/Makefile.in: removed libconverters dependency

2003-12-12 08:11  dggoodwin

	* INSTALLING, License.txt, config.h, config.h.in, configure,
	  Cantera/src/Makefile.in, Cantera/src/config.h,
	  Cantera/src/misc.cpp, config/configure, config/configure.in,
	  tools/src/Makefile.in: isolated Chemkin file support to building
	  ck2cti

2003-12-11 05:01  dggoodwin

	* Cantera/python/: Cantera/rxnpath.py, src/ctrpath_methods.cpp,
	  src/methods.h: set font in reaction path diagrams

2003-12-11 04:15  dggoodwin

	* tools/src/package4mac.in: initial import

2003-12-11 04:06  dggoodwin

	* Cantera/src/transport/: DustyGasTransport.cpp,
	  DustyGasTransport.h, MixTransport.cpp, MultiTransport.cpp,
	  SolidTransport.cpp, TransportBase.h, TransportFactory.cpp: minor
	  cleanup

2003-12-05 09:13  dggoodwin

	* Cantera/src/: PureFluidPhase.h, ThermoPhase.cpp, ThermoPhase.h,
	  transport/DustyGasTransport.cpp, transport/DustyGasTransport.h: -

2003-11-24 08:39  dggoodwin

	* configure, Cantera/clib/src/ct.cpp, Cantera/clib/src/ct.h,
	  Cantera/python/setup.py.in,
	  Cantera/python/Cantera/ThermoPhase.py,
	  Cantera/python/Cantera/ctml_writer.py,
	  Cantera/python/src/ctthermo_methods.cpp, Cantera/src/State.h,
	  Cantera/src/ThermoFactory.cpp, Cantera/src/ThermoPhase.h,
	  Cantera/src/ctml.cpp, Cantera/src/ctml.h,
	  Cantera/src/importCTML.cpp, Cantera/src/mix_defs.h,
	  Cantera/src/xml.cpp, Cantera/src/oneD/StFlow.cpp,
	  Cantera/src/transport/DustyGasTransport.cpp, ext/tpx/utils.cpp: -

2003-11-19 02:50  dggoodwin

	* Makefile.in, config/configure, config/configure.in,
	  tools/templates/cxx/demo.cpp, tools/templates/cxx/demo.mak.in,
	  tools/templates/f77/demo.f, tools/templates/f77/demo.mak.in,
	  tools/templates/f77/demo_ftnlib.cpp: -

2003-11-19 01:37  dggoodwin

	* Makefile.in, config.h, Cantera/src/config.h, config/configure,
	  config/configure.in, tools/Makefile.in,
	  tools/bin/finish_install.py, tools/man/mixmaster.1,
	  tools/src/finish_install.py.in, tools/templates/f77/demo.mak.in:
	  -

2003-11-17 07:19  dggoodwin

	* config/configure, config/configure.in, config.h,
	  Cantera/src/config.h, tools/Makefile.in,
	  tools/bin/finish_install.py, tools/doc/Cantera.cfg: -

2003-11-17 06:10  dggoodwin

	* Makefile.in, README.txt, config.h.in, configure: -

2003-11-17 05:52  dggoodwin

	* tools/: src/ck2cti.cpp, src/finish_install.py.in,
	  man/mixmaster.1: initial import

2003-11-17 05:51  dggoodwin

	* Cantera/: matlab/Makefile.in, python/Cantera/Transport.py,
	  python/examples/flame2.py, src/oneD/StFlow.cpp,
	  src/oneD/StFlow.h: cleanup

2003-11-16 09:14  dggoodwin

	* tools/man/ck2cti.1: initial import

2003-11-13 03:54  dggoodwin

	* Cantera/src/oneD/MultiJac.cpp: removed NaN test

2003-11-12 10:56  dggoodwin

	* Cantera/src/oneD/StFlow.cpp: multicomponent transport working

2003-11-01 02:11  dggoodwin

	* Cantera/user/: Makefile.in, user.cpp: initial import

2003-10-31 20:48  dggoodwin

	* Cantera/python/Cantera/ctml_writer.py: added capability to have
	  species names with embedded commas

2003-10-24 03:11  dggoodwin

	* tools/doc/html/banner4.jpg: initial import

2003-10-21 17:33  dggoodwin

	* Cantera/src/: State.h, State.cpp: minor cleanup

2003-10-15 09:21  hkmoffa

	* Cantera/src/misc.cpp: Added a call to delete the static instance
	  of a Falloff factory

2003-10-15 09:20  hkmoffa

	* Cantera/src/transport/: TransportFactory.cpp, TransportFactory.h:
	  Fixed a bug in the destructor, wherein an infinite loop condition
	  may occur.

2003-10-14 05:58  dggoodwin

	* Cantera/python/Cantera/DustyGasTransport.py: initial import

2003-09-25 13:37  dggoodwin

	* Cantera/src/transport/: DustyGasTransport.cpp,
	  DustyGasTransport.h, Makefile.in, TransportBase.h,
	  TransportFactory.cpp: added DustyGasTransport

2003-09-16 08:58  hkmoffa

	* Cantera/src/ctml.cpp: Fixed a rather hideous error in getMap(),
	  that was causing element compositions to be read incorrectly when
	  the species is made up of a large numbers of a single element.

2003-09-08 06:33  dggoodwin

	* Cantera/fortran/f77demos/: README.txt, ctlib.f, f77demos.mak.in,
	  isentropic.f: initial import

2003-09-05 23:04  dggoodwin

	* tools/templates/f77/: README_WIN32.txt, f77demo.dsp: initial
	  import

2003-09-05 09:57  hkmoffa

	* test_problems/diamondSurf/runDiamond.cpp: loosened the tolerances
	  on nil printing

2003-09-05 09:42  hkmoffa

	* Cantera/src/transport/: MixTransport.cpp, MixTransport.h,
	  MultiTransport.cpp: Fixed several UMR's discovered while using
	  valgrind.

2003-09-05 09:20  hkmoffa

	* test_problems/diamondSurf/: Makefile.in, runDiamond.cpp,
	  runDiamond_blessed.out: Fixed the Makefile.in, undated runDiamond
	  to print out more nulls, and changed the solution back. I had an
	  error in my Cantera version that created an undocumented changed
	  in the result.

2003-09-05 07:45  hkmoffa

	* data/transport/misc_tran.dat: Added a III-V database

2003-09-04 16:42  dggoodwin

	* Cantera/python/Cantera/OneD/: __init__.py, flame.py, onedim.py:
	  initial import

2003-09-03 13:00  hkmoffa

	* test_problems/diamondSurf/: runDiamond.cpp,
	  runDiamond_blessed.out: Rebaselined due to change in units

2003-09-03 12:59  hkmoffa

	* Cantera/src/: FalloffFactory.h, FalloffMgr.h: Fixed an error that
	  I had introduced.

2003-09-03 12:59  hkmoffa

	* test_problems/cxx_ex/: kin1_blessed.csv, kin2_blessed.csv:
	  rebaselined due to change in constants.

2003-09-03 11:49  hkmoffa

	* Cantera/src/converters/Makefile.in: Might as well keep this in
	  till it breaks.

2003-09-03 11:48  hkmoffa

	* Cantera/src/converters/: ck2ctml.cpp, ck2ctml.h: Added const to
	  the aguement lists.

2003-09-03 11:45  hkmoffa

	* Cantera/src/: global.h, misc.cpp: Added a function called
	  appdelete(), which deletes all global data malloced by Cantera.
	  With this call added to applications, Cantera passes the leak
	  check from the valgrind application.	(Well there is some
	  squirrely behavior associated with either valgrind, linux, or the
	  stl implementation, but it's not Cantera's fault).

	  I also changed get_XML_File to store the absolute pathname in the
	  map, so that the same XML tree isn't deleted twice.  Lookups are
	  always done wrt absolute pathnames.

2003-09-03 11:39  hkmoffa

	* Cantera/src/: importCTML.cpp, importCTML.h: Added the function
	  get_XML_NameID, which does a search on the xml element name and
	  id attribute.

	  Made importSpecies() a global function. I needed this in order to
	  read in enhancements to the XML data file for the PartSpecPhase
	  class.

2003-09-03 11:33  hkmoffa

	* Cantera/src/: InterfaceKinetics.cpp, InterfaceKinetics.h: Added
	  comments and changed the order of functions to place like
	  functions in blocks.

2003-09-03 11:31  hkmoffa

	* Cantera/src/ThermoPhase.h: Cleanup of comment sections.

2003-09-03 11:31  hkmoffa

	* Cantera/src/State.cpp: cleanup

2003-09-03 11:29  hkmoffa

	* Cantera/src/: SpeciesThermo.h, SpeciesThermoFactory.cpp,
	  SpeciesThermoFactory.h: Two main changes:   The routines will now
	  throw a named error condition when it   can't match the species
	  thermo or it can't find the species thermo.	 This is used in
	  PartSpecPhase.cpp to signal that the thermo	 functions should
	  be created on the fly from the bulk phase    thermo and the bulk
	  species basis for the particle species.

	    The second one is to eliminate a potential fatal error of
	    calling a delete for an object in the object's own destructor
	    function.

2003-09-03 11:22  hkmoffa

	* Cantera/src/: xml.cpp, xml.h: Added the function findNameID,
	  which does a tree lookup on the name and the id.  Took out
	  m_level, which seemed to have no purpose.

2003-09-03 11:19  hkmoffa

	* Cantera/src/Phase.h: Added comments.

2003-09-03 11:18  hkmoffa

	* Cantera/src/.cvsignore: Added a file.

2003-09-03 11:17  hkmoffa

	* Cantera/src/units.h: fixed a potentially fatal error of doing a
	  delete in a destructor on the object containing the destructor.

2003-09-03 11:15  hkmoffa

	* Cantera/src/: Constituents.cpp, Constituents.h: Added a vector
	  get for the atoms in a species.

2003-09-03 08:35  hkmoffa

	* Cantera/src/: FalloffFactory.h, FalloffMgr.h: Fixed an error with
	  the destructors. valgrind showed that destructor wasn't being
	  called for single instance of FalloffFactory.

2003-08-29 07:59  dggoodwin

	* Cantera/clib/src/genpy.py: initial import

2003-08-25 12:50  dggoodwin

	* Cantera/matlab/cantera/examples/catcomb.m: initial import

2003-08-25 11:29  hkmoffa

	* Cantera/src/SurfPhase.h: Added a dummy routine to set and store
	  the pressure. It doesn't have an effect on anything. However, it
	  doesn't cause a cantera error.

2003-08-23 10:14  dggoodwin

	* data/inputs/nasa.cti: initial import

2003-08-21 15:39  hkmoffa

	* Cantera/src/IncompressibleThermo.h: Changed fmax to fmaxx.

2003-08-21 15:38  hkmoffa

	* Cantera/src/RateCoeffMgr.h: Added the writeUpdate() function. It
	  was needed to resolve externals.

2003-08-21 15:37  hkmoffa

	* Cantera/src/MultiDomain.h: changed fmax to fmaxx

2003-08-21 15:36  hkmoffa

	* Cantera/src/RxnRates.h: Changed fmax() to fmaxx() in one call.

2003-08-21 15:35  hkmoffa

	* Cantera/src/importCTML.cpp: Added more comments.

2003-08-21 15:34  hkmoffa

	* Cantera/src/ct2ctml.cpp: Commented out a spurious write operation

2003-08-21 15:33  hkmoffa

	* Cantera/src/ctml.h: Added a name of an argument.

2003-08-21 15:32  hkmoffa

	* Cantera/src/misc.cpp: Added a comment

2003-08-21 15:32  hkmoffa

	* Cantera/src/: xml.cpp, xml.h: Changed findXMLPhase() to return a
	  non const XML tree. It broke the runDiamond program the other
	  way, because importPhase() uses a non const XML tree argument.
	  Also, the change commits a small alteration in the xml write
	  operation that allows for the top level of an xml file to contain
	  multiple elements. previously this was not possible.

2003-08-21 15:28  hkmoffa

	* Cantera/src/zeroD/Reactor.cpp: Fixed a UMR in the file.

2003-08-21 15:26  hkmoffa

	* examples/cxx/: equil_example1.cpp, kinetics_example1.cpp,
	  rxnpath_example1.cpp, transport_example1.cpp,
	  transport_example2.cpp: The find_xml interface has been
	  deprecated. Therefore, there were changes needed in these files.

2003-08-21 15:25  hkmoffa

	* test_problems/: Makefile.in, silane_equil/output_blessed.txt,
	  silane_equil/silane_equil.cpp, surfkin/Interface.h,
	  surfkin/Makefile.in, surfkin/output_blessed.txt,
	  surfkin/surfdemo.cpp: Rebaselined the problem. The solution
	  changed in the 4th sig digit, because, I think, the physical
	  constants changed in ct_defs.h

2003-08-21 15:23  hkmoffa

	* test_problems/diamondSurf/: runDiamond.cpp,
	  runDiamond_blessed.out: Rebaselined test, because the answer
	  changed in the 4th digit. I think it is due to the change in
	  physical constants in ct_defs.h

2003-08-21 10:48  hkmoffa

	* Cantera/Makefile.in: changed fortran to fortran/src. Added
	  particle hooks which should all be turned off by default.

2003-08-21 10:39  hkmoffa

	* Cantera/fortran/src/: .cvsignore, fct.cpp: find_XML is no longer
	  in the Cantera kernel API.  this fixes the problem, replacing it
	  with calls to get_XML_Node().

2003-08-21 08:35  hkmoffa

	* test_problems/diamondSurf/: diamond.cti, diamond_blessed.xml,
	  runDiamond_blessed.out: Rebaselined after adding in a reaction

2003-08-21 07:27  dggoodwin

	* Cantera/src/zeroD/Wall.cpp: add support for surface chem

2003-08-21 07:26  dggoodwin

	* Cantera/src/zeroD/Wall.h: added support for surface chemistry on
	  each side of the wall

2003-08-21 07:26  dggoodwin

	* Cantera/src/zeroD/Reactor.h: added surface chemistry

2003-08-21 07:25  dggoodwin

	* Cantera/src/zeroD/Reactor.cpp: added support for surface
	  chemistry.

2003-08-20 19:40  dggoodwin

	* Cantera/src/ct2ctml.cpp: fixed get_CTML_Tree

2003-08-20 14:34  hkmoffa

	* Cantera/src/misc.cpp: Added header lines to the file

2003-08-20 13:23  hkmoffa

	* Cantera/src/xml.h: Added a CVS version comment block

2003-08-20 13:00  hkmoffa

	* config/configure.in: Added another test directory

2003-08-20 12:36  hkmoffa

	* test_problems/diamondSurf/: .cvsignore, Makefile.in, diamond.cti,
	  diamond_blessed.xml, runDiamond.cpp, runDiamond_blessed.out,
	  run_diamond.py, runtest: Added a new test problem

2003-08-20 08:30  dggoodwin

	* Cantera/src/oneD/StFlow.h: added some 'const's

2003-08-20 08:28  dggoodwin

	* Cantera/src/global.h: added two new functions.

2003-08-20 08:27  dggoodwin

	* Cantera/src/: ctml.h, oneD/Sim1D.cpp, oneD/StFlow.cpp: added some
	  'const's

2003-08-20 08:27  dggoodwin

	* Cantera/src/ct_defs.h: changed gas constant to 1999 CODATA value,
	  removed option to not use kmol.

2003-08-20 08:26  dggoodwin

	* Cantera/src/ct2ctml.cpp: get_CTML_Tree is now deprecated. Use
	  get_XML_File in misc.cpp.

2003-08-20 08:23  dggoodwin

	* Cantera/src/: SpeciesThermoFactory.cpp, ThermoPhase.h: added some
	  'const's

2003-08-20 08:19  dggoodwin

	* Cantera/src/misc.cpp: added option to clear all entries in
	  close_XML_File.

2003-08-20 08:18  dggoodwin

	* Cantera/python/Cantera/Transport.py: stopped storing ThermoPhase
	  object, since this is self-referential in classes like Solution
	  that derive from Transport and ThermoPhase.

2003-08-20 08:16  dggoodwin

	* Cantera/python/Cantera/Kinetics.py: stopped storing ThermoPhase
	  objects, since this is self-referential if a class derives from
	  both Kinetics and ThermoPhase, causing it to never be deleted.

2003-08-20 08:15  dggoodwin

	* Cantera/python/Cantera/solution.py: changed call to XML_Node
	  constructor

2003-08-20 08:13  dggoodwin

	* Cantera/python/Cantera/XML.py: removed self.root, which was
	  self-referencing.  'build' replaced by 'get_XML_File' in
	  constructor.

2003-08-20 08:03  hkmoffa

	* Cantera/src/importCTML.cpp: More comments added

2003-08-19 15:02  hkmoffa

	* Cantera/python/Cantera/ctml_writer.py: Fixed an error in an
	  argument list

2003-08-19 10:28  hkmoffa

	* tools/src/: Makefile.in, ck2cti.cpp, ck2ctml.cpp, cti2ctml.cpp:
	  Added some conversion programs.

2003-08-19 07:57  hkmoffa

	* Cantera/src/SurfPhase.h: Added more comments

2003-08-17 22:05  dggoodwin

	* Cantera/python/Cantera/ctml_writer.py: added support for
	  specified reaction order, sticking coefficients, coverage
	  dependence of rate coefficients; fixed error where site_density
	  was not being converted to SI.

2003-08-17 12:14  dggoodwin

	* Cantera/src/RateCoeffMgr.h: added comments

2003-08-17 11:56  dggoodwin

	* Cantera/src/importCTML.cpp: Added support for coverage-dependent
	  reaction rates and sticking coefficients, and reactions with
	  specified  reaction order.

2003-08-17 05:47  dggoodwin

	* Cantera/src/Kinetics.h: cleaned up and added more comments

2003-08-16 13:17  dggoodwin

	* Cantera/python/Cantera/ctml_writer.py: changed handling of
	  reaction pre-exponential units to write converted value to CTML,
	  rather than pass original value with a units string

2003-08-14 09:06  hkmoffa

	* Cantera/src/Kinetics.h: Organized the functions to list better
	  under doxygen.  Added more comments.	Didn't change any of the
	  actual code.

2003-08-13 08:24  hkmoffa

	* Cantera/src/xml.cpp: Fixed an error with build(). Basically it
	  was having trouble with the tag "--". I think that tag is illegal
	  anyway.

2003-08-12 17:55  hkmoffa

	* Cantera/src/xml.cpp: Fixed two errors in reading an xml file.
	  1) empty child xml elements had an extra / character being added
	  onto	    the end of their name   2) comments with beginning and
	  ending white space were being copied	    with an extra space
	  added on to the front and end of the string.

2003-08-11 10:08  hkmoffa

	* Cantera/src/State.h: Added comments.

2003-08-11 09:13  hkmoffa

	* Cantera/src/Kinetics.h: Added more comments.

2003-08-08 12:58  hkmoffa

	* Cantera/src/InterfaceKinetics.cpp: Added more comment.s

2003-08-07 14:49  hkmoffa

	* test_problems/surfkin/surface.xml: Updated the xml data file

2003-08-07 14:42  hkmoffa

	* Cantera/src/Makefile.in: Added a make hdr-collect line.  This is
	  needed because the .h files in the build directory should be kept
	  up to date with the .a files in the build directory. Thus, you
	  need to update. Obviously, a more refined approach could be
	  envisioned where only out of date .h files are copied.

2003-08-07 08:59  hkmoffa

	* Cantera/src/importCTML.cpp: Added a lot of comments to the
	  routine.

2003-08-06 17:23  hkmoffa

	* test_problems/Makefile.in: Added the Makefile.in input file

2003-08-06 17:22  hkmoffa

	* test_problems/cxx_ex/: kin1_blessed.csv, tr1_blessed.csv,
	  tr2_blessed.csv: Rebaselined these three tests. The results had
	  changed in the 3rd significant digit.

	  The changes, according to Goodwin, were most likely due to the
	  change in the method of inclusion of the activation energies.
	  Basically, a non standard kcal/mole conversion method was used to
	  convert activation energies to temperatures internally.

2003-08-06 17:16  hkmoffa

	* Cantera/src/ct2ctml.cpp: Fixed an error in get_CTML_Tree() where
	  the program wouldn't use the path where the file was found, but
	  would assume the file was located in the current directory. This
	  caused an empty ifstream to be send to build(), which then
	  created an infinite loop (probably another error in build() that
	  needs to be fixed).

2003-08-06 16:16  hkmoffa

	* Cantera/src/converters/Makefile.in: Broke a long line in two

2003-08-06 15:43  hkmoffa

	* config/: configure, configure.in: Added the surfkin directory

2003-08-06 11:30  hkmoffa

	* test_problems/cxx_ex/: gri30.xml, silane.xml: Updated xml files

2003-08-06 11:15  hkmoffa

	* include/: GRI30.h, IdealGasMix.h: Fixed GRI30.h. The id was wrong
	  and caused a test problem to fail.

2003-08-06 11:13  hkmoffa

	* examples/cxx/.cvsignore: Added to cvsignore list

2003-08-06 10:32  hkmoffa

	* test_problems/surfkin/: .cvsignore, Interface.h, Makefile.in,
	  output_blessed.txt, runtest, surface.xml, surfdemo.cpp: Added a
	  simple test that calculate a rate of production for a surface
	  mechanism

2003-08-06 10:14  hkmoffa

	* Cantera/src/ctml.cpp: Added a get_CTML_Tree() function. It was
	  missing though there was an entry in ctml.h and IdealGasMix.h
	  used it.

2003-08-06 10:10  hkmoffa

	* test_problems/silane_equil/silane.xml: updated xml file. test
	  passes.

2003-08-04 16:15  hkmoffa

	* Cantera/src/: GasKinetics.cpp, GasKinetics.h: Added a bunch of
	  new routines to return delta thermo values and reaction rate
	  constants.

2003-08-04 16:10  hkmoffa

	* Cantera/src/converters/: ck2ct.cpp, ck2ctml.cpp: Fixed up a
	  couple of issues with the stringstream block. That block works
	  for reading transport databases with comments in them. The other
	  block seems to get hung up.

2003-08-04 07:27  hkmoffa

	* tools/src/Makefile.in: Added a dependency to library files

2003-08-01 17:37  hkmoffa

	* Cantera/src/RateCoeffMgr.h: added a comment.

2003-08-01 17:36  hkmoffa

	* Cantera/src/: ThermoFactory.cpp, ThermoFactory.h: Added a
	  specific named error condition for when the thermo factory can't
	  find a match against a known ThermoPhase derivative class.  This
	  can be (and is in cttables) used to catch thrown errors, so that
	  the kernel can be made extensible wrt other ThermoPhase
	  derivative classes it may not know about.

2003-08-01 17:34  hkmoffa

	* Cantera/src/: KineticsFactory.cpp, KineticsFactory.h: Added a
	  specific named error for not matching against a kinetics model.
	  This can be (and is in cttables) used to catch a thrown error
	  condition to make the kernel extensible wrt new kinetics
	  managers.

2003-08-01 17:29  hkmoffa

	* Cantera/src/InterfaceKinetics.cpp: Added a few comments

2003-08-01 17:28  hkmoffa

	* Cantera/src/InterfaceKinetics.h: Added a comment block

2003-08-01 17:27  hkmoffa

	* Cantera/src/Kinetics.h: Organized the routines into sections.
	  Added a bunch of routines that report the change in thermo
	  quantities due to reactions.

2003-08-01 17:25  hkmoffa

	* Cantera/src/xml.cpp: Took out print statements in debug blocks

2003-08-01 17:24  hkmoffa

	* Cantera/src/: ThermoPhase.cpp, ThermoPhase.h: Added a function
	  getUnitsStandardConc() that will report in a vector form what the
	  units are (in MKS) for the standard and generalized
	  concentrations.  This is used to find what the units are for
	  reaction rate constants and is used by cttables to actually print
	  out the units for reaction rate constants.

2003-08-01 17:16  hkmoffa

	* Cantera/src/transport/: MixTransport.cpp, MixTransport.h,
	  MultiTransport.cpp, MultiTransport.h, TransportBase.h,
	  TransportFactory.cpp, TransportFactory.h: Added a function to
	  MixTransport and MultiTransport that returns all of the raw
	  transport data input from the original database.  I am using this
	  in cttables for the print out to provide closure to the user's
	  expectations.

2003-08-01 13:50  hkmoffa

	* Cantera/src/State.h: Added one more routine, needed to get at
	  private data

2003-08-01 13:13  hkmoffa

	* Cantera/src/ctml.cpp: Slight change in comment

2003-08-01 12:44  hkmoffa

	* Cantera/src/ctvector.cpp: Check for null before deleting or
	  copying. Not strictly necessary, but good form.

2003-08-01 12:43  hkmoffa

	* Cantera/src/mix_defs.h: Added descriptions of the ThermoPhase
	  classes known to this routine.

2003-08-01 12:42  hkmoffa

	* Cantera/src/ctml.cpp: UPgraded one error condition statement

2003-07-29 15:37  dggoodwin

	* Cantera/src/State.h: moved some methods to State.cpp

2003-07-29 15:32  dggoodwin

	* Cantera/src/State.cpp: initial import

2003-07-25 13:46  hkmoffa

	* Cantera/src/: xml.cpp, xml.h: Fixed several serious errors and
	  added a couple of routines.	 1) the read operation would hash
	  any quoted string with a space       character in it.    2)
	  changed children() to return a reference rather than the
	  complete object    3) write() would leave off the final endl
	  character. This has	    been fixed.  Additions:    copy()
	  copyUnion(): union of two trees; this routine may be problematic
	  findXMLPhase(): phase lookup.  Notes:  find_XML() still
	  contains a memory leak.

2003-07-24 08:58  hkmoffa

	* Cantera/src/Kinetics.h: Fixed an error in the Constructor
	  function. m_indexPhase wasn't being set at all

2003-07-23 14:54  hkmoffa

	* Cantera/src/Kinetics.h: Added a lot of comments to the header
	  file

2003-07-23 14:53  hkmoffa

	* Cantera/src/ConstDensityThermo.h: Took out an unnecessary
	  redefinition of m_kk from an inherited class

2003-07-23 14:51  hkmoffa

	* Cantera/src/stringUtils.cpp: Slight formatting change

2003-07-23 08:41  hkmoffa

	* Cantera/src/StoichManager.h: Added comments to the file

2003-07-21 09:28  hkmoffa

	* Cantera/src/Elements.h: Took out a surplus doxygen comment about
	  the Cantera Namespace. It created an error during doxygen
	  compilation

2003-07-21 09:26  hkmoffa

	* Cantera/src/ThermoPhase.h: Added more doxygen comments to the
	  files.  Added a catch/throw block to setstate_TPX().

2003-07-21 09:08  hkmoffa

	* Cantera/src/State.h: Commented the member data.

2003-07-21 09:02  hkmoffa

	* Cantera/src/Constituents.h: Took out a double nested @name that
	  gave a warning to doxygen

2003-07-18 13:19  hkmoffa

	* Cantera/src/Phase.h: Added comments about m_kk needing to be
	  restated in this class.

2003-07-07 09:45  hkmoffa

	* Cantera/src/ResidEval.h: Added more functions to the virtual base
	  class. This will mean that all classes that inherit from this
	  class will be broken until they too add definitions for these
	  functions.

2003-07-07 09:39  hkmoffa

	* Cantera/src/converters/ck2ctml.cpp: Commented out several
	  statically defined functions that were not used in the file.

2003-07-07 08:35  hkmoffa

	* Cantera/src/SolidCompound.h: Fixed a compiler warning. Linux
	  warns against initialization lists which are not in the same
	  order as items in the class itself.

2003-07-04 00:35  dggoodwin

	* tools/bin/finish_install.py: added 'source setup_cantera'

2003-07-04 00:18  dggoodwin

	* tools/bin/finish_install.py: added warning if the Python
	  interface does not install.

2003-07-03 09:23  hkmoffa

	* Cantera/src/Array.h: Added the function ptrColumn(), which
	  returns a pointer to the top of a column of the matrix.

2003-06-27 07:08  dggoodwin

	* Cantera/src/converters/ck2ctml.cpp: corrected bug in addTransport

2003-06-27 07:07  dggoodwin

	* tools/bin/finish_install.py: added script to set matlab path

2003-06-11 14:33  hkmoffa

	* Cantera/src/.cvsignore: Added another file to this list

2003-06-10 09:39  hkmoffa

	* Cantera/src/misc.cpp: Fixed a typo in a comment

2003-06-10 09:32  hkmoffa

	* test_problems/silane_equil/.cvsignore: Added a file to the ignore
	  list, created during the test

2003-06-10 08:27  hkmoffa

	* Cantera/src/Makefile.in: Uncommented the tpx rule

2003-06-10 08:26  hkmoffa

	* Cantera/matlab/Makefile.in: Took out the references to the
	  directories, 1D/@Domain1D/private and 1D/@Stack/private. They
	  don't currently exist in the present version of the distribution.

2003-06-10 08:07  hkmoffa

	* include/.cvsignore: Added a .cvsignore file

2003-06-10 08:02  hkmoffa

	* tools/templates/: f77/.cvsignore, cxx/.cvsignore: Added a
	  .cvsignore file

2003-06-09 17:19  hkmoffa

	* Cantera/cxx/.cvsignore: Added this file so that cvs update
	  doesn't flag Makefile

2003-06-09 15:02  hkmoffa

	* tools/src/.cvsignore: Added a file to the ignore list

2003-06-08 08:18  dggoodwin

	* Cantera/matlab/cantera/@Transport/trans_hndl.m: initial import

2003-06-08 07:52  dggoodwin

	* Cantera/: cxx/writelog.cpp, python/src/writelog.cpp,
	  matlab/cantera/private/write.cpp: initial import

2003-06-08 07:41  dggoodwin

	* Cantera/src/oneD/boundaries1D.cpp: initial import

2003-05-13 12:43  dggoodwin

	* Cantera/src/: DASPK.h, InterfaceKinetics.cpp, ReactionPath.cpp,
	  ReactionPath.h, funcs.cpp, importCTML.cpp, misc.cpp,
	  oneD/Inlet1D.h, oneD/Makefile.in, oneD/MultiNewton.cpp,
	  oneD/OneDim.cpp, oneD/OneDim.h, oneD/Resid1D.h, oneD/Sim1D.cpp,
	  oneD/Sim1D.h, oneD/StFlow.cpp, oneD/StFlow.h,
	  oneD/newton_utils.cpp, oneD/refine.cpp, oneD/refine.h: -

2003-05-06 07:20  dggoodwin

	* tools/templates/cxx/: demo.cpp, demo.mak.in: fixed errors

2003-05-06 06:36  dggoodwin

	* tools/templates/cxx/: demo.cpp, demo.mak.in: initial import

2003-04-24 02:48  dggoodwin

	* Cantera/python/examples/function1.py: initial import

2003-04-21 11:16  dggoodwin

	* tools/doc/: Cantera.cfg, ct.css, footer.html, header.html:
	  initial import

2003-04-21 02:55  dggoodwin

	* Makefile.in: corrected lib directory

2003-04-20 07:40  dggoodwin

	* Cantera/matlab/Makefile.in: fixed library in Makefile.in

2003-04-20 06:26  dggoodwin

	* Cantera/: matlab/.cvsignore, matlab/cantera/.cvsignore,
	  python/.cvsignore, src/.cvsignore: added .cvsignore in mattlab

2003-04-20 06:21  dggoodwin

	* config/: configure, configure.in: added target to buildlib

2003-04-20 06:18  dggoodwin

	* Cantera/python/: Makefile.in, setup.py, setup.py.in: perform
	  configuration of setup.py

2003-04-18 16:19  dggoodwin

	* include/: GRI30.h, onedim.h, reactionpaths.h, transport.h,
	  zerodim.h: minor cleanup

2003-04-18 04:00  dggoodwin

	* tools/templates/f77/: demo.mak.in, demo_ftnlib.cpp,
	  sample.mak.in: renamed sample.mak.in to demo.mak.in

2003-04-14 10:57  dggoodwin

	* .cvsignore, INSTALLING, License.rtf, License.txt, Makefile.in,
	  README, config.h, config.h.in, configure, apps/README.txt,
	  apps/MixMaster/.cvsignore, apps/MixMaster/CompositionFrame.py,
	  apps/MixMaster/ControlPanel.py, apps/MixMaster/DataFrame.py,
	  apps/MixMaster/DataGraph.py, apps/MixMaster/Edit.py,
	  apps/MixMaster/ElementFrame.py, apps/MixMaster/GraphFrame.py,
	  apps/MixMaster/__init__.py, apps/MixMaster/config.py,
	  apps/MixMaster/flowpanel.py, Cantera/.cvsignore,
	  Cantera/Makefile.in, Cantera/clib/src/.cvsignore,
	  Cantera/clib/src/Cabinet.h, Cantera/clib/src/Makefile.in,
	  Cantera/clib/src/Storage.cpp, Cantera/clib/src/Storage.h,
	  Cantera/clib/src/clib_defs.h, Cantera/clib/src/ct.cpp,
	  Cantera/clib/src/ct.h, Cantera/clib/src/ctbdry.cpp,
	  Cantera/clib/src/ctbdry.h, Cantera/clib/src/ctfunc.cpp,
	  Cantera/clib/src/ctfunc.h, Cantera/clib/src/ctnum.cpp,
	  Cantera/clib/src/ctnum.h, Cantera/clib/src/ctreactor.cpp,
	  Cantera/clib/src/ctreactor.h, Cantera/clib/src/ctrpath.cpp,
	  Cantera/clib/src/ctrpath.h, Cantera/clib/src/ctstagn.cpp,
	  Cantera/clib/src/ctstagn.h, Cantera/clib/src/ctsurf.cpp,
	  Cantera/clib/src/ctsurf.h, Cantera/clib/src/ctxml.cpp,
	  Cantera/clib/src/ctxml.h, Cantera/cxx/README, Cantera/lib/README,
	  Cantera/matlab/Makefile.in, Cantera/matlab/setup_matlab.py,
	  Cantera/matlab/cantera/Contents.m,
	  Cantera/matlab/cantera/GRI30.m,
	  Cantera/matlab/cantera/IdealGasMix.m,
	  Cantera/matlab/cantera/MassFlowController.m,
	  Cantera/matlab/cantera/Reservoir.m,
	  Cantera/matlab/cantera/Valve.m, Cantera/matlab/cantera/adddir.m,
	  Cantera/matlab/cantera/air.m, Cantera/matlab/cantera/build.m,
	  Cantera/matlab/cantera/buildux.m,
	  Cantera/matlab/cantera/buildwin.m,
	  Cantera/matlab/cantera/ck2ctml.m, Cantera/matlab/cantera/conhp.m,
	  Cantera/matlab/cantera/constants.m,
	  Cantera/matlab/cantera/conuv.m,
	  Cantera/matlab/cantera/gasconstant.m,
	  Cantera/matlab/cantera/geterr.m,
	  Cantera/matlab/cantera/mexopts.sh,
	  Cantera/matlab/cantera/oneatm.m,
	  Cantera/matlab/cantera/reactor_ode.m,
	  Cantera/matlab/cantera/@FlowDevice/FlowDevice.m,
	  Cantera/matlab/cantera/@FlowDevice/clear.m,
	  Cantera/matlab/cantera/@FlowDevice/install.m,
	  Cantera/matlab/cantera/@FlowDevice/massFlowRate.m,
	  Cantera/matlab/cantera/@FlowDevice/setMassFlowRate.m,
	  Cantera/matlab/cantera/@FlowDevice/setValveCoeff.m,
	  Cantera/matlab/cantera/@FlowDevice/private/flowdevicemethods.m,
	  Cantera/matlab/cantera/@Kinetics/Kinetics.m,
	  Cantera/matlab/cantera/@Kinetics/clear.m,
	  Cantera/matlab/cantera/@Kinetics/creationRates.m,
	  Cantera/matlab/cantera/@Kinetics/destructionRates.m,
	  Cantera/matlab/cantera/@Kinetics/destruction_rates.m,
	  Cantera/matlab/cantera/@Kinetics/equil_Kc.m,
	  Cantera/matlab/cantera/@Kinetics/hndl.m,
	  Cantera/matlab/cantera/@Kinetics/isReversible.m,
	  Cantera/matlab/cantera/@Kinetics/kinetics_hndl.m,
	  Cantera/matlab/cantera/@Kinetics/multiplier.m,
	  Cantera/matlab/cantera/@Kinetics/nReactions.m,
	  Cantera/matlab/cantera/@Kinetics/nTotalSpecies.m,
	  Cantera/matlab/cantera/@Kinetics/netProdRates.m,
	  Cantera/matlab/cantera/@Kinetics/reactionEqn.m,
	  Cantera/matlab/cantera/@Kinetics/rop.m,
	  Cantera/matlab/cantera/@Kinetics/rop_f.m,
	  Cantera/matlab/cantera/@Kinetics/rop_net.m,
	  Cantera/matlab/cantera/@Kinetics/rop_r.m,
	  Cantera/matlab/cantera/@Kinetics/rxnEqs.m,
	  Cantera/matlab/cantera/@Kinetics/setMultiplier.m,
	  Cantera/matlab/cantera/@Kinetics/stoich_net.m,
	  Cantera/matlab/cantera/@Kinetics/stoich_p.m,
	  Cantera/matlab/cantera/@Kinetics/stoich_r.m,
	  Cantera/matlab/cantera/@Kinetics/ydot.m,
	  Cantera/matlab/cantera/@Kinetics/private/delkinetics.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/isrev.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/kin_get.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/kin_set.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/kinetics_get.m,
	  Cantera/matlab/cantera/@Kinetics/private/kinetics_set.m,
	  Cantera/matlab/cantera/@Kinetics/private/newkinetics.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/production.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/pstoich.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/rop.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/rstoich.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/rxnstring.cpp,
	  Cantera/matlab/cantera/@Reactor/Reactor.m,
	  Cantera/matlab/cantera/@Reactor/advance.m,
	  Cantera/matlab/cantera/@Reactor/clear.m,
	  Cantera/matlab/cantera/@Reactor/density.m,
	  Cantera/matlab/cantera/@Reactor/enthalpy_mass.m,
	  Cantera/matlab/cantera/@Reactor/hndl.m,
	  Cantera/matlab/cantera/@Reactor/insert.m,
	  Cantera/matlab/cantera/@Reactor/intEnergy_mass.m,
	  Cantera/matlab/cantera/@Reactor/mass.m,
	  Cantera/matlab/cantera/@Reactor/massFraction.m,
	  Cantera/matlab/cantera/@Reactor/massFractions.m,
	  Cantera/matlab/cantera/@Reactor/pressure.m,
	  Cantera/matlab/cantera/@Reactor/reactor_hndl.m,
	  Cantera/matlab/cantera/@Reactor/setEnergy.m,
	  Cantera/matlab/cantera/@Reactor/setInitialTime.m,
	  Cantera/matlab/cantera/@Reactor/setInitialVolume.m,
	  Cantera/matlab/cantera/@Reactor/setKineticsMgr.m,
	  Cantera/matlab/cantera/@Reactor/setThermoMgr.m,
	  Cantera/matlab/cantera/@Reactor/step.m,
	  Cantera/matlab/cantera/@Reactor/temperature.m,
	  Cantera/matlab/cantera/@Reactor/time.m,
	  Cantera/matlab/cantera/@Reactor/volume.m,
	  Cantera/matlab/cantera/@Reactor/private/reactormethods.cpp,
	  Cantera/matlab/cantera/@Reactor/private/reactormethods.m,
	  Cantera/matlab/cantera/@Solution/Solution.m,
	  Cantera/matlab/cantera/@Solution/clear.m,
	  Cantera/matlab/cantera/@Solution/display.m,
	  Cantera/matlab/cantera/@Solution/set.m,
	  Cantera/matlab/cantera/@Solution/soundspeed.m,
	  Cantera/matlab/cantera/@ThermoPhase/ThermoPhase.m,
	  Cantera/matlab/cantera/@ThermoPhase/atomicMasses.m,
	  Cantera/matlab/cantera/@ThermoPhase/chemPotentials.m,
	  Cantera/matlab/cantera/@ThermoPhase/clear.m,
	  Cantera/matlab/cantera/@ThermoPhase/cp_R.m,
	  Cantera/matlab/cantera/@ThermoPhase/cp_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/cp_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/cv_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/cv_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/density.m,
	  Cantera/matlab/cantera/@ThermoPhase/elementIndex.m,
	  Cantera/matlab/cantera/@ThermoPhase/elementName.m,
	  Cantera/matlab/cantera/@ThermoPhase/enthalpies_RT.m,
	  Cantera/matlab/cantera/@ThermoPhase/enthalpy_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/enthalpy_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/entropies_R.m,
	  Cantera/matlab/cantera/@ThermoPhase/entropy_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/entropy_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/eosType.m,
	  Cantera/matlab/cantera/@ThermoPhase/equilibrate.m,
	  Cantera/matlab/cantera/@ThermoPhase/gibbs_RT.m,
	  Cantera/matlab/cantera/@ThermoPhase/gibbs_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/gibbs_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/hndl.m,
	  Cantera/matlab/cantera/@ThermoPhase/intEnergy_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/intEnergy_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/isIdealGas.m,
	  Cantera/matlab/cantera/@ThermoPhase/massFractions.m,
	  Cantera/matlab/cantera/@ThermoPhase/maxTemp.m,
	  Cantera/matlab/cantera/@ThermoPhase/meanMolarMass.m,
	  Cantera/matlab/cantera/@ThermoPhase/meanMolecularWeight.m,
	  Cantera/matlab/cantera/@ThermoPhase/minTemp.m,
	  Cantera/matlab/cantera/@ThermoPhase/molarDensity.m,
	  Cantera/matlab/cantera/@ThermoPhase/molarMasses.m,
	  Cantera/matlab/cantera/@ThermoPhase/moleFractions.m,
	  Cantera/matlab/cantera/@ThermoPhase/molecularWeights.m,
	  Cantera/matlab/cantera/@ThermoPhase/nAtoms.m,
	  Cantera/matlab/cantera/@ThermoPhase/nElements.m,
	  Cantera/matlab/cantera/@ThermoPhase/nSpecies.m,
	  Cantera/matlab/cantera/@ThermoPhase/ph.m,
	  Cantera/matlab/cantera/@ThermoPhase/pressure.m,
	  Cantera/matlab/cantera/@ThermoPhase/refPressure.m,
	  Cantera/matlab/cantera/@ThermoPhase/set.m,
	  Cantera/matlab/cantera/@ThermoPhase/setDensity.m,
	  Cantera/matlab/cantera/@ThermoPhase/setMassFractions.m,
	  Cantera/matlab/cantera/@ThermoPhase/setMoleFractions.m,
	  Cantera/matlab/cantera/@ThermoPhase/setPressure.m,
	  Cantera/matlab/cantera/@ThermoPhase/setState.m,
	  Cantera/matlab/cantera/@ThermoPhase/setState_HP.m,
	  Cantera/matlab/cantera/@ThermoPhase/setState_SP.m,
	  Cantera/matlab/cantera/@ThermoPhase/setState_UV.m,
	  Cantera/matlab/cantera/@ThermoPhase/setTemperature.m,
	  Cantera/matlab/cantera/@ThermoPhase/speciesIndex.m,
	  Cantera/matlab/cantera/@ThermoPhase/speciesName.m,
	  Cantera/matlab/cantera/@ThermoPhase/speciesNames.m,
	  Cantera/matlab/cantera/@ThermoPhase/temperature.m,
	  Cantera/matlab/cantera/@ThermoPhase/thermo_hndl.m,
	  Cantera/matlab/cantera/@ThermoPhase/private/phase_get.m,
	  Cantera/matlab/cantera/@ThermoPhase/private/phase_set.m,
	  Cantera/matlab/cantera/@ThermoPhase/private/thermo_get.m,
	  Cantera/matlab/cantera/@ThermoPhase/private/thermo_set.m,
	  Cantera/matlab/cantera/@Transport/Transport.m,
	  Cantera/matlab/cantera/@Transport/binDiffCoeffs.m,
	  Cantera/matlab/cantera/@Transport/hndl.m,
	  Cantera/matlab/cantera/@Transport/mixDiffCoeffs.m,
	  Cantera/matlab/cantera/@Transport/multiDiffCoeffs.m,
	  Cantera/matlab/cantera/@Transport/thermalConductivity.m,
	  Cantera/matlab/cantera/@Transport/thermalDiffCoeffs.m,
	  Cantera/matlab/cantera/@Transport/viscosity.m,
	  Cantera/matlab/cantera/@Transport/private/newTransport.cpp,
	  Cantera/matlab/cantera/@Transport/private/trans_get.m,
	  Cantera/matlab/cantera/@Transport/private/trans_methods.cpp,
	  Cantera/matlab/cantera/@Wall/Wall.m,
	  Cantera/matlab/cantera/@Wall/area.m,
	  Cantera/matlab/cantera/@Wall/install.m,
	  Cantera/matlab/cantera/@Wall/ready.m,
	  Cantera/matlab/cantera/@Wall/setArea.m,
	  Cantera/matlab/cantera/@Wall/setExpansionRateCoeff.m,
	  Cantera/matlab/cantera/@Wall/setHeatTransferCoeff.m,
	  Cantera/matlab/cantera/@Wall/setThermalResistance.m,
	  Cantera/matlab/cantera/@Wall/wall_hndl.m,
	  Cantera/matlab/cantera/@Wall/private/wallmethods.cpp,
	  Cantera/matlab/cantera/@Wall/private/wallmethods.m,
	  Cantera/matlab/cantera/@XML_Node/XML_Node.m,
	  Cantera/matlab/cantera/@XML_Node/attrib.m,
	  Cantera/matlab/cantera/@XML_Node/build.m,
	  Cantera/matlab/cantera/@XML_Node/child.m,
	  Cantera/matlab/cantera/@XML_Node/hndl.m,
	  Cantera/matlab/cantera/@XML_Node/value.m,
	  Cantera/matlab/cantera/@XML_Node/write.m,
	  Cantera/matlab/cantera/@XML_Node/private/newxml.cpp,
	  Cantera/matlab/cantera/@XML_Node/private/xmlmethods.cpp,
	  Cantera/matlab/cantera/examples/equil.m,
	  Cantera/matlab/cantera/examples/ignite.m,
	  Cantera/matlab/cantera/examples/ignite2.m,
	  Cantera/matlab/cantera/examples/ignite3.m,
	  Cantera/matlab/cantera/examples/ignite_hp.m,
	  Cantera/matlab/cantera/examples/ignite_uv.m,
	  Cantera/matlab/cantera/examples/isentropic.m,
	  Cantera/matlab/cantera/examples/periodic_cstr.m,
	  Cantera/matlab/cantera/examples/prandtl1.m,
	  Cantera/matlab/cantera/examples/prandtl2.m,
	  Cantera/matlab/cantera/examples/reactor1.m,
	  Cantera/matlab/cantera/examples/reactor2.m,
	  Cantera/matlab/cantera/examples/run_examples.m,
	  Cantera/matlab/cantera/examples/transport1.m,
	  Cantera/matlab/cantera/private/ctfunctions.cpp,
	  Cantera/matlab/cantera/private/ctmatutils.h,
	  Cantera/matlab/cantera/private/ctmethods.cpp,
	  Cantera/matlab/cantera/private/flowdevicemethods.cpp,
	  Cantera/matlab/cantera/private/importFromFile.m,
	  Cantera/matlab/cantera/private/kineticsmethods.cpp,
	  Cantera/matlab/cantera/private/phasemethods.cpp,
	  Cantera/matlab/cantera/private/reactormethods.cpp,
	  Cantera/matlab/cantera/private/thermomethods.cpp,
	  Cantera/matlab/cantera/private/transportmethods.cpp,
	  Cantera/matlab/cantera/private/wallmethods.cpp,
	  Cantera/matlab/cantera/private/xmlmethods.cpp,
	  Cantera/matlab/cantera/tutorial/README,
	  Cantera/matlab/cantera/tutorial/tut1.m,
	  Cantera/matlab/cantera/tutorial/tut2.m,
	  Cantera/matlab/cantera/tutorial/tut3.m,
	  Cantera/matlab/cantera/tutorial/tut4.m,
	  Cantera/matlab/cantera/tutorial/tut5.m,
	  Cantera/matlab/cantera/tutorial/tut6.m,
	  Cantera/matlab/cantera/tutorial/tut7.m,
	  Cantera/python/.cvsignore, Cantera/python/Makefile.in,
	  Cantera/python/setup.py, Cantera/python/Cantera/__init__.py,
	  Cantera/python/Cantera/boundaries1D.py,
	  Cantera/python/Cantera/ck2ctml.py,
	  Cantera/python/Cantera/constants.py,
	  Cantera/python/Cantera/elements.py,
	  Cantera/python/Cantera/excel.py,
	  Cantera/python/Cantera/exceptions.py,
	  Cantera/python/Cantera/flame.py, apps/MixMaster/ImportFrame.py,
	  apps/MixMaster/KineticsFrame.py, apps/MixMaster/MechManager.py,
	  apps/MixMaster/Mix.py, apps/MixMaster/NewFlowFrame.py,
	  apps/MixMaster/SpeciesFrame.py, apps/MixMaster/SpeciesInfo.py,
	  apps/MixMaster/ThermoFrame.py, apps/MixMaster/ThermoProp.py,
	  apps/MixMaster/TransportFrame.py, apps/MixMaster/UnitChooser.py,
	  apps/MixMaster/gri30.py, apps/MixMaster/main.py,
	  apps/MixMaster/menu.py, apps/MixMaster/newflow.py,
	  apps/MixMaster/utilities.py, apps/MixMaster/Units/SI.py,
	  apps/MixMaster/Units/__init__.py, apps/MixMaster/Units/area.py,
	  apps/MixMaster/Units/density.py, apps/MixMaster/Units/energy.py,
	  apps/MixMaster/Units/force.py, apps/MixMaster/Units/length.py,
	  apps/MixMaster/Units/mass.py, apps/MixMaster/Units/power.py,
	  apps/MixMaster/Units/pressure.py,
	  apps/MixMaster/Units/specificEnergy.py,
	  apps/MixMaster/Units/specificEntropy.py,
	  apps/MixMaster/Units/speed.py,
	  apps/MixMaster/Units/temperature.py,
	  apps/MixMaster/Units/time.py, apps/MixMaster/Units/unit.py,
	  apps/MixMaster/Units/volume.py, bin/.cvsignore, bin/README,
	  bin/mixmaster.py, bin/rm_cvsignore,
	  Cantera/python/Cantera/Flow.py,
	  Cantera/python/Cantera/FlowBoundary.py,
	  Cantera/python/Cantera/FlowPlotter.py,
	  Cantera/python/Cantera/Func.py,
	  Cantera/python/Cantera/Interface.py,
	  Cantera/python/Cantera/Kinetics.py,
	  Cantera/python/Cantera/OneDim.py,
	  Cantera/python/Cantera/Phase.py,
	  Cantera/python/Cantera/Reactor.py,
	  Cantera/python/Cantera/SurfWriter.py,
	  Cantera/python/Cantera/SurfacePhase.py,
	  Cantera/python/Cantera/Thermo.py,
	  Cantera/python/Cantera/ThermoPhase.py,
	  Cantera/python/Cantera/Transport.py,
	  Cantera/python/Cantera/XML.py, Cantera/python/Cantera/gases.py,
	  Cantera/python/Cantera/importFromFile.py,
	  Cantera/python/Cantera/interp.py,
	  Cantera/python/Cantera/refine.py,
	  Cantera/python/Cantera/rxnpath.py,
	  Cantera/python/Cantera/schem.py, Cantera/python/Cantera/set.py,
	  Cantera/python/Cantera/solids.py,
	  Cantera/python/Cantera/solution.py,
	  Cantera/python/Cantera/solve.py,
	  Cantera/python/Cantera/stoich.py,
	  Cantera/python/Cantera/tecplot.py,
	  Cantera/python/Cantera/units.py,
	  Cantera/python/examples/flame1.py,
	  Cantera/python/examples/flame2.py,
	  Cantera/python/examples/isentropic.py,
	  Cantera/python/examples/reactor1.py,
	  Cantera/python/examples/reactor2.py,
	  Cantera/python/examples/rxnpath1.py,
	  Cantera/python/examples/rxnpath2.py,
	  Cantera/python/examples/stflame1.py,
	  Cantera/python/examples/stflame2.py,
	  Cantera/python/src/.cvsignore, Cantera/python/src/Makefile.in,
	  Cantera/python/src/cantera.def,
	  Cantera/python/src/canteramodule.cpp, Cantera/python/src/ct.def,
	  Cantera/python/src/ctbndry_methods.cpp,
	  Cantera/python/src/ctflow.cpp, Cantera/python/src/ctflow.def,
	  Cantera/python/src/ctflow_methods.cpp,
	  Cantera/python/src/ctfunc_methods.cpp,
	  Cantera/python/src/ctfuncs.cpp,
	  Cantera/python/src/ctkinetics.cpp,
	  Cantera/python/src/ctkinetics.def,
	  Cantera/python/src/ctkinetics_methods.cpp,
	  Cantera/python/src/ctmodule.cpp,
	  Cantera/python/src/ctnumerics.cpp,
	  Cantera/python/src/ctnumerics.def,
	  Cantera/python/src/ctphase.cpp, Cantera/python/src/ctphase.def,
	  Cantera/python/src/ctphase_methods.cpp,
	  Cantera/python/src/ctpy.cpp, Cantera/python/src/ctpybndry.cpp,
	  Cantera/python/src/ctpyfunc.cpp,
	  Cantera/python/src/ctpyreactor.cpp,
	  Cantera/python/src/ctpyrpath.cpp,
	  Cantera/python/src/ctpysurf.cpp, Cantera/python/src/ctpyxml.cpp,
	  Cantera/python/src/ctreactor_methods.cpp,
	  Cantera/python/src/ctrpath_methods.cpp,
	  Cantera/python/src/ctsurf.cpp, Cantera/python/src/ctsurf.def,
	  Cantera/python/src/ctsurf_methods.cpp,
	  Cantera/python/src/ctthermo.cpp, Cantera/python/src/ctthermo.def,
	  Cantera/python/src/ctthermo_methods.cpp,
	  Cantera/python/src/cttransport.cpp,
	  Cantera/python/src/cttransport.def,
	  Cantera/python/src/cttransport_methods.cpp,
	  Cantera/python/src/ctxml_methods.cpp,
	  Cantera/python/src/methods.h, Cantera/python/src/pycantera.cpp,
	  Cantera/python/src/pyutils.h,
	  Cantera/python/src/reactionpath.cpp,
	  Cantera/python/tutorial/tut1.py, Cantera/python/tutorial/tut2.py,
	  Cantera/python/tutorial/tut4.py, Cantera/src/.cvsignore,
	  Cantera/src/Array.h, Cantera/src/ArrayViewer.h,
	  Cantera/src/BandMatrix.cpp, Cantera/src/BandMatrix.h,
	  Cantera/src/ChemEquil.cpp, Cantera/src/ChemEquil.h,
	  Cantera/src/ConstDensityThermo.cpp,
	  Cantera/src/ConstDensityThermo.h, Cantera/src/config.h,
	  Cantera/src/CVode.cpp, Cantera/src/CVode.h,
	  Cantera/src/Constituents.cpp, Cantera/src/Constituents.h,
	  Cantera/src/DASPK.cpp, Cantera/src/DASPK.h,
	  Cantera/src/DenseMatrix.cpp, Cantera/src/DenseMatrix.h,
	  Cantera/src/EOS_TPX.h, Cantera/src/Elements.cpp,
	  Cantera/src/Elements.h, Cantera/src/Enhanced3BConc.h,
	  Cantera/src/FILES, Cantera/src/FalloffFactory.cpp,
	  Cantera/src/FalloffFactory.h, Cantera/src/FalloffMgr.h,
	  Cantera/src/Flow1D.h, Cantera/src/FtnODESys.h,
	  Cantera/src/Func1.h, Cantera/src/FuncEval.h, Cantera/src/GRI30.h,
	  Cantera/src/GRI_30_Kinetics.cpp, Cantera/src/GRI_30_Kinetics.h,
	  Cantera/src/GasKinetics.cpp, Cantera/src/GasKinetics.h,
	  Cantera/src/GasKineticsWriter.cpp,
	  Cantera/src/GasKineticsWriter.h, Cantera/src/Group.cpp,
	  Cantera/src/Group.h, Cantera/src/IdealGasPhase.cpp,
	  Cantera/src/IdealGasPhase.h, Cantera/src/IdealGasThermo.cpp,
	  Cantera/src/IdealGasThermo.h, Cantera/src/ImplicitChem.cpp,
	  Cantera/src/ImplicitChem.h, Cantera/src/ImplicitSurfChem.cpp,
	  Cantera/src/ImplicitSurfChem.h,
	  Cantera/src/IncompressibleThermo.h, Cantera/src/Integrator.h,
	  Cantera/src/InterfaceKinetics.cpp,
	  Cantera/src/InterfaceKinetics.h, Cantera/src/Jac2.h,
	  Cantera/src/Kinetics.h, Cantera/src/KineticsFactory.cpp,
	  Cantera/src/KineticsFactory.h, Cantera/src/L_matrix.h,
	  Cantera/src/MMCollisionInt.cpp, Cantera/src/Makefile.in,
	  Cantera/src/MixTransport.cpp, Cantera/src/MultiDomain.h,
	  Cantera/src/NasaPoly1.h, Cantera/src/NasaThermo.h,
	  Cantera/src/Newton.h, Cantera/src/Phase.cpp,
	  Cantera/src/ct_defs.h, Cantera/src/ctexceptions.h,
	  Cantera/src/ctlapack.h, Cantera/src/ctml.cpp, Cantera/src/ctml.h,
	  Cantera/src/ctvector.cpp, Cantera/src/ctvector.h,
	  Cantera/src/exceptions.h, Cantera/src/fitPoly.h,
	  Cantera/src/flowBoundaries.h, Cantera/src/funcs.cpp,
	  Cantera/src/gases.h, Cantera/src/global.h, Cantera/src/import.h,
	  Cantera/src/importCTML.cpp, Cantera/src/importCTML.h,
	  Cantera/src/importSurfChem.cpp, Cantera/src/importXML.h,
	  Cantera/src/lapack.h, Cantera/src/misc.cpp,
	  Cantera/src/mix_defs.h, Cantera/src/mix_utils.h,
	  Cantera/src/newton_utils.cpp, Cantera/src/Phase.h,
	  Cantera/src/PolyThermo.h, Cantera/src/PolyThermoMgr.h,
	  Cantera/src/PropertyCalculator.h, Cantera/src/PropertyUpdater.h,
	  Cantera/src/RateCoeffMgr.h, Cantera/src/ReactionData.h,
	  Cantera/src/ReactionPath.cpp, Cantera/src/ReactionPath.h,
	  Cantera/src/Resid.h, Cantera/src/Resid1D.h,
	  Cantera/src/ResidEval.h, Cantera/src/RxnRates.h,
	  Cantera/src/ShomatePoly.h, Cantera/src/ShomateThermo.h,
	  Cantera/src/SimpleThermo.h, Cantera/src/SpeciesThermo.h,
	  Cantera/src/SpeciesThermoFactory.cpp,
	  Cantera/src/SpeciesThermoFactory.h,
	  Cantera/src/SpeciesThermoMgr.h, Cantera/src/State.h,
	  Cantera/src/StoichManager.h, Cantera/src/Surf1D.h,
	  Cantera/src/SurfPhase.h, Cantera/src/Thermo.h,
	  Cantera/src/ThermoFactory.cpp, Cantera/src/ThermoFactory.h,
	  Cantera/src/ThermoPhase.cpp, Cantera/src/ThermoPhase.h,
	  Cantera/src/ThirdBodyMgr.h, Cantera/src/TigerPolynomial.h,
	  Cantera/src/plots.cpp, Cantera/src/plots.h,
	  Cantera/src/polyfit.h, Cantera/src/pureSubstances.h,
	  Cantera/src/reaction_defs.h, Cantera/src/recipes.h,
	  Cantera/src/sort.cpp, Cantera/src/sort.h,
	  Cantera/src/speciesThermoTypes.h, Cantera/src/stringUtils.cpp,
	  Cantera/src/stringUtils.h, Cantera/src/surfKinetics.cpp,
	  Cantera/src/surfKinetics.h, Cantera/src/surfacePhase.h,
	  Cantera/src/transportModels.h, Cantera/src/units.h,
	  Cantera/src/updaters.h, Cantera/src/utilities.h,
	  Cantera/src/vec_functions.h, Cantera/src/xml.cpp,
	  Cantera/src/xml.h, Cantera/src/converters/.cvsignore,
	  Cantera/src/converters/CKParser.cpp,
	  Cantera/src/converters/CKParser.h,
	  Cantera/src/converters/CKReader.cpp,
	  Cantera/src/converters/CKReader.h,
	  Cantera/src/converters/Constituent.h,
	  Cantera/src/converters/Element.h, Cantera/src/converters/Group.h,
	  Cantera/src/converters/Makefile.in,
	  Cantera/src/converters/Reaction.cpp,
	  Cantera/src/converters/Reaction.h,
	  Cantera/src/converters/RxnSpecies.h,
	  Cantera/src/converters/Species.h,
	  Cantera/src/converters/atomicWeightDB.cpp,
	  Cantera/src/converters/ck2ctml.cpp,
	  Cantera/src/converters/ck2ctml.h,
	  Cantera/src/converters/ckr_defs.h,
	  Cantera/src/converters/ckr_utils.cpp,
	  Cantera/src/converters/ckr_utils.h,
	  Cantera/src/converters/config.h,
	  Cantera/src/converters/filter.cpp,
	  Cantera/src/converters/thermoFunctions.cpp,
	  Cantera/src/converters/thermoFunctions.h,
	  Cantera/src/converters/writelog.cpp,
	  Cantera/src/converters/writelog.h, Cantera/src/oneD/.cvsignore,
	  Cantera/src/oneD/Inlet1D.h, Cantera/src/oneD/Jac1D.h,
	  Cantera/src/oneD/Makefile.in, Cantera/src/oneD/MultiJac.cpp,
	  Cantera/src/oneD/MultiJac.h, Cantera/src/oneD/MultiNewton.cpp,
	  Cantera/src/oneD/MultiNewton.h, Cantera/src/oneD/Newton1D.h,
	  Cantera/src/oneD/OneDim.cpp, Cantera/src/oneD/OneDim.h,
	  Cantera/src/oneD/Resid1D.h, Cantera/src/oneD/newton_utils.cpp,
	  Cantera/src/oneD/StFlow.cpp, Cantera/src/oneD/StFlow.h,
	  Cantera/src/oneD/Surf1D.h, Cantera/src/transport/.cvsignore,
	  Cantera/src/transport/FtnTransport.h,
	  Cantera/src/transport/MMCollisionInt.cpp,
	  Cantera/src/transport/MMCollisionInt.h,
	  Cantera/src/transport/Makefile.in,
	  Cantera/src/transport/MixTransport.cpp,
	  Cantera/src/transport/MixTransport.h,
	  Cantera/src/transport/MultiTransport.cpp,
	  Cantera/src/transport/MultiTransport.h,
	  Cantera/src/transport/TransportBase.h,
	  Cantera/src/transport/TransportFactory.cpp,
	  Cantera/src/transport/TransportFactory.h,
	  Cantera/src/transport/TransportParams.h,
	  Cantera/src/zeroD/.cvsignore, Cantera/src/zeroD/FlowDevice.cpp,
	  Cantera/src/zeroD/FlowDevice.h, Cantera/src/zeroD/Makefile.in,
	  Cantera/src/zeroD/PID_Controller.h,
	  Cantera/src/zeroD/Reactor.cpp, Cantera/src/zeroD/Reactor.h,
	  Cantera/src/zeroD/ReactorBase.cpp,
	  Cantera/src/zeroD/ReactorBase.h, Cantera/src/zeroD/Reservoir.h,
	  Cantera/src/zeroD/Wall.cpp, Cantera/src/zeroD/Wall.h,
	  Cantera/src/zeroD/flowControllers.h, config/.cvsignore,
	  config/Cantera.README, config/config.guess, config/config.h.in,
	  config/config.sub, config/configure, config/configure.in,
	  config/install-sh, data/README, data/inputs/.cvsignore,
	  data/inputs/air.inp, data/inputs/air.xml, data/inputs/argon.inp,
	  data/inputs/argon.xml, data/inputs/elements.xml,
	  data/inputs/gases.xml, data/inputs/Makefile.in,
	  data/inputs/gri30.inp, data/inputs/gri30.xml,
	  data/inputs/gri30mod.inp, data/inputs/grinc.inp,
	  data/inputs/h2o2.inp, data/inputs/h2o2.xml,
	  data/inputs/h2o2_noch.inp, data/inputs/mkxml,
	  data/inputs/silane.inp, data/inputs/silane.xml,
	  data/thermo/nasathermo.dat, data/transport/gri30_tran.dat,
	  examples/.cvsignore, examples/Makefile.in,
	  examples/cxx/.cvsignore, examples/cxx/Makefile.in,
	  examples/cxx/equil_example1.cpp, examples/cxx/example_utils.h,
	  examples/cxx/examples.cpp, examples/cxx/examples.dsp,
	  examples/cxx/kinetics_example1.cpp,
	  examples/cxx/kinetics_example2.cpp,
	  examples/cxx/rxnpath_example1.cpp,
	  examples/cxx/transport_example1.cpp,
	  examples/cxx/transport_example2.cpp, ext/.cvsignore,
	  ext/Makefile.in, ext/blas/.cvsignore, ext/blas/dasum.f,
	  ext/blas/daxpy.f, ext/blas/dcabs1.f, ext/blas/dcopy.f,
	  ext/blas/ddot.f, ext/blas/dgbmv.f, ext/blas/dgemm.f,
	  ext/blas/dgemv.f, ext/blas/dger.f, ext/blas/dnrm2.f,
	  ext/blas/drot.f, ext/blas/drotg.f, ext/blas/drotm.f,
	  ext/blas/drotmg.f, ext/blas/dsbmv.f, ext/blas/dscal.f,
	  ext/blas/dsdot.f, ext/blas/dspmv.f, ext/blas/dspr.f,
	  ext/blas/dspr2.f, ext/blas/dswap.f, ext/blas/dsymm.f,
	  ext/blas/dsymv.f, ext/blas/dsyr.f, ext/blas/dsyr2.f,
	  ext/blas/dsyr2k.f, ext/blas/dsyrk.f, ext/blas/dtbmv.f,
	  ext/blas/dtbsv.f, ext/blas/dtpmv.f, ext/blas/dtpsv.f,
	  ext/blas/dtrmm.f, ext/blas/dtrmv.f, ext/blas/Makefile.in,
	  ext/blas/dtrsm.f, ext/blas/dtrsv.f, ext/blas/dzasum.f,
	  ext/blas/dznrm2.f, ext/blas/icamax.f, ext/blas/idamax.f,
	  ext/blas/isamax.f, ext/blas/izamax.f, ext/blas/lsame.f,
	  ext/blas/xerbla.f, ext/cvode/.cvsignore, ext/cvode/Makefile.in,
	  ext/cvode/include/band.h, ext/cvode/include/cvband.h,
	  ext/cvode/include/cvbandpre.h, ext/cvode/include/cvdense.h,
	  ext/cvode/include/cvdiag.h, ext/cvode/include/cvode.h,
	  ext/cvode/include/cvspgmr.h, ext/cvode/include/dense.h,
	  ext/cvode/include/iterativ.h, ext/cvode/include/llnlmath.h,
	  ext/cvode/include/llnltyps.h, ext/cvode/include/nvector.h,
	  ext/cvode/include/spgmr.h, ext/cvode/source/band.c,
	  ext/cvode/source/cvband.c, ext/cvode/source/cvbandpre.c,
	  ext/cvode/source/cvdense.c, ext/cvode/source/cvdiag.c,
	  ext/cvode/source/cvode.c, ext/cvode/source/cvspgmr.c,
	  ext/cvode/source/dense.c, ext/cvode/source/iterativ.c,
	  ext/cvode/source/llnlmath.c, ext/cvode/source/nvector.c,
	  ext/cvode/source/spgmr.c, ext/lapack/.cvsignore,
	  ext/lapack/Makefile.in, ext/lapack/dbdsqr.f, ext/lapack/dgbsv.f,
	  ext/lapack/dgbtf2.f, ext/lapack/dgbtrf.f, ext/lapack/dgbtrs.f,
	  ext/lapack/dgebd2.f, ext/lapack/dgebrd.f, ext/lapack/dgelq2.f,
	  ext/lapack/dgelqf.f, ext/lapack/dgelss.f, ext/lapack/dgeqr2.f,
	  ext/lapack/dgeqrf.f, ext/lapack/dgetf2.f, ext/lapack/dgetrf.f,
	  ext/lapack/dgetri.f, ext/lapack/dgetrs.f, ext/lapack/dlabad.f,
	  ext/lapack/dlabrd.f, ext/lapack/dlacpy.f, ext/lapack/dlamch.f,
	  ext/lapack/dlange.f, ext/lapack/dlapy2.f, ext/lapack/dlarf.f,
	  ext/lapack/dlarfb.f, ext/lapack/dlarfg.f, ext/lapack/dlarft.f,
	  ext/lapack/dlartg.f, ext/lapack/dlas2.f, ext/lapack/dlascl.f,
	  ext/lapack/dlaset.f, ext/lapack/dlasq1.f, ext/lapack/dlasq2.f,
	  ext/lapack/dlasq3.f, ext/lapack/dlasq4.f, ext/lapack/dlasr.f,
	  ext/lapack/dlasrt.f, ext/lapack/dlassq.f, ext/lapack/dlasv2.f,
	  ext/lapack/dlaswp.f, ext/lapack/dorg2r.f, ext/lapack/dorgbr.f,
	  ext/lapack/dorgl2.f, ext/lapack/dorglq.f, ext/lapack/dorgqr.f,
	  ext/lapack/dorm2r.f, ext/lapack/dormbr.f, ext/lapack/dorml2.f,
	  ext/lapack/dormlq.f, ext/lapack/dormqr.f, ext/lapack/drscl.f,
	  ext/lapack/ilaenv.f, ext/lapack/lsame.f, ext/lapack/xerbla.f,
	  ext/math/.cvsignore, ext/math/cblas.h, ext/math/daux.f,
	  ext/math/Makefile.in, ext/math/ddaspk.f, ext/math/dgbefa.f,
	  ext/math/dgbsl.f, ext/math/dgefa.f, ext/math/dgesl.f,
	  ext/math/dp1vlu.f, ext/math/dpcoef.f, ext/math/dpolft.f,
	  ext/math/fdump.f, ext/math/gmres.h, ext/math/idamax.f,
	  ext/math/j4save.f, ext/math/mach.cpp, ext/math/mkl_cblas.h,
	  ext/math/pcoef.f, ext/math/polfit.f, ext/math/pvalue.f,
	  ext/math/xercnt.f, ext/math/xerhlt.f, ext/math/xermsg.f,
	  ext/math/xerprn.f, ext/math/xersve.f, ext/math/xgetua.f,
	  ext/recipes/.cvsignore, ext/recipes/Makefile.in,
	  ext/recipes/simp1.f, ext/recipes/simp2.f, ext/recipes/simp3.f,
	  ext/recipes/simplx.f, ext/recipes/splie2.f, ext/recipes/splin2.f,
	  ext/recipes/spline.f, ext/recipes/splint.f, ext/tpx/.cvsignore,
	  ext/tpx/.depends, ext/tpx/CFluid.cpp, ext/tpx/CFluid.h,
	  ext/tpx/CGas.cpp, ext/tpx/CLK.cpp, ext/tpx/CLK.h,
	  ext/tpx/HFC134a.cpp, ext/tpx/HFC134a.h, ext/tpx/Hydrogen.cpp,
	  ext/tpx/Hydrogen.h, ext/tpx/Makefile.in, ext/tpx/Methane.cpp,
	  ext/tpx/Methane.h, ext/tpx/Nitrogen.cpp, ext/tpx/Nitrogen.h,
	  ext/tpx/Oxygen.cpp, ext/tpx/Oxygen.h, ext/tpx/ck_gas.cpp,
	  ext/tpx/ck_gas.h, ext/tpx/ideal.cpp, ext/tpx/lk.cpp,
	  ext/tpx/lk.h, ext/tpx/lkw.cpp, ext/tpx/lkw.h, ext/tpx/mix.h,
	  ext/tpx/Sub.cpp, ext/tpx/Sub.h, ext/tpx/Water.cpp,
	  ext/tpx/Water.h, ext/tpx/subs.h, ext/tpx/utils.cpp,
	  ext/tpx/utils.h, include/Cantera.h, include/IdealGasMix.h,
	  include/README, include/config.h, include/core.h, include/ctml.h,
	  include/equilibrium.h, include/ftn_defs.h, include/integrators.h,
	  include/kinetics.h, include/numerics.h, include/onedim.h,
	  include/surface.h, include/transport.h,
	  include/fortran/ctfdevmod.f, include/fortran/ctkineticsmod.f,
	  include/fortran/ctmixturemod.f, include/fortran/ctmod.f,
	  include/fortran/ctreactormod.f, include/fortran/ctthermomod.f,
	  include/fortran/cttransportmod.f, include/fortran/ctutilsmod.f,
	  lib/README, test_problems/.cvsignore, test_problems/Makefile.in,
	  test_problems/cxx_ex/.cvsignore,
	  test_problems/cxx_ex/eq1_blessed.csv,
	  test_problems/cxx_ex/eq1_blessed.dat,
	  test_problems/cxx_ex/gri30.inp, test_problems/cxx_ex/gri30.xml,
	  test_problems/cxx_ex/gri30_tran.dat,
	  test_problems/cxx_ex/gri30mod.inp,
	  test_problems/cxx_ex/Makefile.in,
	  test_problems/cxx_ex/kin1_blessed.csv,
	  test_problems/cxx_ex/kin2_blessed.csv,
	  test_problems/cxx_ex/runtest, test_problems/cxx_ex/silane.inp,
	  test_problems/cxx_ex/silane.xml,
	  test_problems/cxx_ex/tr1_blessed.csv,
	  test_problems/cxx_ex/tr2_blessed.csv,
	  test_problems/silane_equil/.cvsignore,
	  test_problems/silane_equil/Makefile.in,
	  test_problems/silane_equil/output_blessed.txt,
	  test_problems/silane_equil/runtest,
	  test_problems/silane_equil/silane.xml,
	  test_problems/silane_equil/silane_equil.cpp, tools/.cvsignore,
	  tools/Makefile.in, tools/export, tools/bin/ctupdate.py,
	  tools/bin/finish_install.py, tools/src/.cvsignore,
	  tools/src/Makefile.in, tools/src/ck2ctml.cpp,
	  tools/src/ck2ctml.dsp, tools/src/ctlibsample.mak.in,
	  tools/src/ctsetup.cpp, tools/src/ctsetup.in, tools/src/ctwin,
	  tools/src/makedsp.cpp, tools/src/newdsp.cpp, tools/src/proto.dsp,
	  tools/src/protocvf.dsp, tools/src/protocxx.cpp,
	  tools/src/protocxx.dsp, tools/src/sample.mak.in,
	  tools/src/sample_f90.mak.in, tools/src/validate.cpp,
	  tools/templates/f77/demo.f, tools/templates/f77/demo_ftnlib.cpp,
	  tools/templates/f77/sample.mak.in, tools/testtools/.cvsignore,
	  tools/testtools/Makefile.in, tools/testtools/csvdiff.cpp,
	  tools/testtools/mdp_allo.cpp, tools/testtools/mdp_allo.h,
	  tools/testtools/tok_input_util.cpp,
	  tools/testtools/tok_input_util.h: Initial import.

2003-04-14 10:57  dggoodwin

	* .cvsignore, INSTALLING, License.rtf, License.txt, Makefile.in,
	  README, config.h, config.h.in, configure, apps/README.txt,
	  apps/MixMaster/.cvsignore, apps/MixMaster/CompositionFrame.py,
	  apps/MixMaster/ControlPanel.py, apps/MixMaster/DataFrame.py,
	  apps/MixMaster/DataGraph.py, apps/MixMaster/Edit.py,
	  apps/MixMaster/ElementFrame.py, apps/MixMaster/GraphFrame.py,
	  apps/MixMaster/__init__.py, apps/MixMaster/config.py,
	  apps/MixMaster/flowpanel.py, Cantera/.cvsignore,
	  Cantera/Makefile.in, Cantera/clib/src/.cvsignore,
	  Cantera/clib/src/Cabinet.h, Cantera/clib/src/Makefile.in,
	  Cantera/clib/src/Storage.cpp, Cantera/clib/src/Storage.h,
	  Cantera/clib/src/clib_defs.h, Cantera/clib/src/ct.cpp,
	  Cantera/clib/src/ct.h, Cantera/clib/src/ctbdry.cpp,
	  Cantera/clib/src/ctbdry.h, Cantera/clib/src/ctfunc.cpp,
	  Cantera/clib/src/ctfunc.h, Cantera/clib/src/ctnum.cpp,
	  Cantera/clib/src/ctnum.h, Cantera/clib/src/ctreactor.cpp,
	  Cantera/clib/src/ctreactor.h, Cantera/clib/src/ctrpath.cpp,
	  Cantera/clib/src/ctrpath.h, Cantera/clib/src/ctstagn.cpp,
	  Cantera/clib/src/ctstagn.h, Cantera/clib/src/ctsurf.cpp,
	  Cantera/clib/src/ctsurf.h, Cantera/clib/src/ctxml.cpp,
	  Cantera/clib/src/ctxml.h, Cantera/cxx/README, Cantera/lib/README,
	  Cantera/matlab/Makefile.in, Cantera/matlab/setup_matlab.py,
	  Cantera/matlab/cantera/Contents.m,
	  Cantera/matlab/cantera/GRI30.m,
	  Cantera/matlab/cantera/IdealGasMix.m,
	  Cantera/matlab/cantera/MassFlowController.m,
	  Cantera/matlab/cantera/Reservoir.m,
	  Cantera/matlab/cantera/Valve.m, Cantera/matlab/cantera/adddir.m,
	  Cantera/matlab/cantera/air.m, Cantera/matlab/cantera/build.m,
	  Cantera/matlab/cantera/buildux.m,
	  Cantera/matlab/cantera/buildwin.m,
	  Cantera/matlab/cantera/ck2ctml.m, Cantera/matlab/cantera/conhp.m,
	  Cantera/matlab/cantera/constants.m,
	  Cantera/matlab/cantera/conuv.m,
	  Cantera/matlab/cantera/gasconstant.m,
	  Cantera/matlab/cantera/geterr.m,
	  Cantera/matlab/cantera/mexopts.sh,
	  Cantera/matlab/cantera/oneatm.m,
	  Cantera/matlab/cantera/reactor_ode.m,
	  Cantera/matlab/cantera/@FlowDevice/FlowDevice.m,
	  Cantera/matlab/cantera/@FlowDevice/clear.m,
	  Cantera/matlab/cantera/@FlowDevice/install.m,
	  Cantera/matlab/cantera/@FlowDevice/massFlowRate.m,
	  Cantera/matlab/cantera/@FlowDevice/setMassFlowRate.m,
	  Cantera/matlab/cantera/@FlowDevice/setValveCoeff.m,
	  Cantera/matlab/cantera/@FlowDevice/private/flowdevicemethods.m,
	  Cantera/matlab/cantera/@Kinetics/Kinetics.m,
	  Cantera/matlab/cantera/@Kinetics/clear.m,
	  Cantera/matlab/cantera/@Kinetics/creationRates.m,
	  Cantera/matlab/cantera/@Kinetics/destructionRates.m,
	  Cantera/matlab/cantera/@Kinetics/destruction_rates.m,
	  Cantera/matlab/cantera/@Kinetics/equil_Kc.m,
	  Cantera/matlab/cantera/@Kinetics/hndl.m,
	  Cantera/matlab/cantera/@Kinetics/isReversible.m,
	  Cantera/matlab/cantera/@Kinetics/kinetics_hndl.m,
	  Cantera/matlab/cantera/@Kinetics/multiplier.m,
	  Cantera/matlab/cantera/@Kinetics/nReactions.m,
	  Cantera/matlab/cantera/@Kinetics/nTotalSpecies.m,
	  Cantera/matlab/cantera/@Kinetics/netProdRates.m,
	  Cantera/matlab/cantera/@Kinetics/reactionEqn.m,
	  Cantera/matlab/cantera/@Kinetics/rop.m,
	  Cantera/matlab/cantera/@Kinetics/rop_f.m,
	  Cantera/matlab/cantera/@Kinetics/rop_net.m,
	  Cantera/matlab/cantera/@Kinetics/rop_r.m,
	  Cantera/matlab/cantera/@Kinetics/rxnEqs.m,
	  Cantera/matlab/cantera/@Kinetics/setMultiplier.m,
	  Cantera/matlab/cantera/@Kinetics/stoich_net.m,
	  Cantera/matlab/cantera/@Kinetics/stoich_p.m,
	  Cantera/matlab/cantera/@Kinetics/stoich_r.m,
	  Cantera/matlab/cantera/@Kinetics/ydot.m,
	  Cantera/matlab/cantera/@Kinetics/private/delkinetics.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/isrev.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/kin_get.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/kin_set.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/kinetics_get.m,
	  Cantera/matlab/cantera/@Kinetics/private/kinetics_set.m,
	  Cantera/matlab/cantera/@Kinetics/private/newkinetics.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/production.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/pstoich.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/rop.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/rstoich.cpp,
	  Cantera/matlab/cantera/@Kinetics/private/rxnstring.cpp,
	  Cantera/matlab/cantera/@Reactor/Reactor.m,
	  Cantera/matlab/cantera/@Reactor/advance.m,
	  Cantera/matlab/cantera/@Reactor/clear.m,
	  Cantera/matlab/cantera/@Reactor/density.m,
	  Cantera/matlab/cantera/@Reactor/enthalpy_mass.m,
	  Cantera/matlab/cantera/@Reactor/hndl.m,
	  Cantera/matlab/cantera/@Reactor/insert.m,
	  Cantera/matlab/cantera/@Reactor/intEnergy_mass.m,
	  Cantera/matlab/cantera/@Reactor/mass.m,
	  Cantera/matlab/cantera/@Reactor/massFraction.m,
	  Cantera/matlab/cantera/@Reactor/massFractions.m,
	  Cantera/matlab/cantera/@Reactor/pressure.m,
	  Cantera/matlab/cantera/@Reactor/reactor_hndl.m,
	  Cantera/matlab/cantera/@Reactor/setEnergy.m,
	  Cantera/matlab/cantera/@Reactor/setInitialTime.m,
	  Cantera/matlab/cantera/@Reactor/setInitialVolume.m,
	  Cantera/matlab/cantera/@Reactor/setKineticsMgr.m,
	  Cantera/matlab/cantera/@Reactor/setThermoMgr.m,
	  Cantera/matlab/cantera/@Reactor/step.m,
	  Cantera/matlab/cantera/@Reactor/temperature.m,
	  Cantera/matlab/cantera/@Reactor/time.m,
	  Cantera/matlab/cantera/@Reactor/volume.m,
	  Cantera/matlab/cantera/@Reactor/private/reactormethods.cpp,
	  Cantera/matlab/cantera/@Reactor/private/reactormethods.m,
	  Cantera/matlab/cantera/@Solution/Solution.m,
	  Cantera/matlab/cantera/@Solution/clear.m,
	  Cantera/matlab/cantera/@Solution/display.m,
	  Cantera/matlab/cantera/@Solution/set.m,
	  Cantera/matlab/cantera/@Solution/soundspeed.m,
	  Cantera/matlab/cantera/@ThermoPhase/ThermoPhase.m,
	  Cantera/matlab/cantera/@ThermoPhase/atomicMasses.m,
	  Cantera/matlab/cantera/@ThermoPhase/chemPotentials.m,
	  Cantera/matlab/cantera/@ThermoPhase/clear.m,
	  Cantera/matlab/cantera/@ThermoPhase/cp_R.m,
	  Cantera/matlab/cantera/@ThermoPhase/cp_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/cp_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/cv_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/cv_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/density.m,
	  Cantera/matlab/cantera/@ThermoPhase/elementIndex.m,
	  Cantera/matlab/cantera/@ThermoPhase/elementName.m,
	  Cantera/matlab/cantera/@ThermoPhase/enthalpies_RT.m,
	  Cantera/matlab/cantera/@ThermoPhase/enthalpy_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/enthalpy_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/entropies_R.m,
	  Cantera/matlab/cantera/@ThermoPhase/entropy_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/entropy_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/eosType.m,
	  Cantera/matlab/cantera/@ThermoPhase/equilibrate.m,
	  Cantera/matlab/cantera/@ThermoPhase/gibbs_RT.m,
	  Cantera/matlab/cantera/@ThermoPhase/gibbs_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/gibbs_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/hndl.m,
	  Cantera/matlab/cantera/@ThermoPhase/intEnergy_mass.m,
	  Cantera/matlab/cantera/@ThermoPhase/intEnergy_mole.m,
	  Cantera/matlab/cantera/@ThermoPhase/isIdealGas.m,
	  Cantera/matlab/cantera/@ThermoPhase/massFractions.m,
	  Cantera/matlab/cantera/@ThermoPhase/maxTemp.m,
	  Cantera/matlab/cantera/@ThermoPhase/meanMolarMass.m,
	  Cantera/matlab/cantera/@ThermoPhase/meanMolecularWeight.m,
	  Cantera/matlab/cantera/@ThermoPhase/minTemp.m,
	  Cantera/matlab/cantera/@ThermoPhase/molarDensity.m,
	  Cantera/matlab/cantera/@ThermoPhase/molarMasses.m,
	  Cantera/matlab/cantera/@ThermoPhase/moleFractions.m,
	  Cantera/matlab/cantera/@ThermoPhase/molecularWeights.m,
	  Cantera/matlab/cantera/@ThermoPhase/nAtoms.m,
	  Cantera/matlab/cantera/@ThermoPhase/nElements.m,
	  Cantera/matlab/cantera/@ThermoPhase/nSpecies.m,
	  Cantera/matlab/cantera/@ThermoPhase/ph.m,
	  Cantera/matlab/cantera/@ThermoPhase/pressure.m,
	  Cantera/matlab/cantera/@ThermoPhase/refPressure.m,
	  Cantera/matlab/cantera/@ThermoPhase/set.m,
	  Cantera/matlab/cantera/@ThermoPhase/setDensity.m,
	  Cantera/matlab/cantera/@ThermoPhase/setMassFractions.m,
	  Cantera/matlab/cantera/@ThermoPhase/setMoleFractions.m,
	  Cantera/matlab/cantera/@ThermoPhase/setPressure.m,
	  Cantera/matlab/cantera/@ThermoPhase/setState.m,
	  Cantera/matlab/cantera/@ThermoPhase/setState_HP.m,
	  Cantera/matlab/cantera/@ThermoPhase/setState_SP.m,
	  Cantera/matlab/cantera/@ThermoPhase/setState_UV.m,
	  Cantera/matlab/cantera/@ThermoPhase/setTemperature.m,
	  Cantera/matlab/cantera/@ThermoPhase/speciesIndex.m,
	  Cantera/matlab/cantera/@ThermoPhase/speciesName.m,
	  Cantera/matlab/cantera/@ThermoPhase/speciesNames.m,
	  Cantera/matlab/cantera/@ThermoPhase/temperature.m,
	  Cantera/matlab/cantera/@ThermoPhase/thermo_hndl.m,
	  Cantera/matlab/cantera/@ThermoPhase/private/phase_get.m,
	  Cantera/matlab/cantera/@ThermoPhase/private/phase_set.m,
	  Cantera/matlab/cantera/@ThermoPhase/private/thermo_get.m,
	  Cantera/matlab/cantera/@ThermoPhase/private/thermo_set.m,
	  Cantera/matlab/cantera/@Transport/Transport.m,
	  Cantera/matlab/cantera/@Transport/binDiffCoeffs.m,
	  Cantera/matlab/cantera/@Transport/hndl.m,
	  Cantera/matlab/cantera/@Transport/mixDiffCoeffs.m,
	  Cantera/matlab/cantera/@Transport/multiDiffCoeffs.m,
	  Cantera/matlab/cantera/@Transport/thermalConductivity.m,
	  Cantera/matlab/cantera/@Transport/thermalDiffCoeffs.m,
	  Cantera/matlab/cantera/@Transport/viscosity.m,
	  Cantera/matlab/cantera/@Transport/private/newTransport.cpp,
	  Cantera/matlab/cantera/@Transport/private/trans_get.m,
	  Cantera/matlab/cantera/@Transport/private/trans_methods.cpp,
	  Cantera/matlab/cantera/@Wall/Wall.m,
	  Cantera/matlab/cantera/@Wall/area.m,
	  Cantera/matlab/cantera/@Wall/install.m,
	  Cantera/matlab/cantera/@Wall/ready.m,
	  Cantera/matlab/cantera/@Wall/setArea.m,
	  Cantera/matlab/cantera/@Wall/setExpansionRateCoeff.m,
	  Cantera/matlab/cantera/@Wall/setHeatTransferCoeff.m,
	  Cantera/matlab/cantera/@Wall/setThermalResistance.m,
	  Cantera/matlab/cantera/@Wall/wall_hndl.m,
	  Cantera/matlab/cantera/@Wall/private/wallmethods.cpp,
	  Cantera/matlab/cantera/@Wall/private/wallmethods.m,
	  Cantera/matlab/cantera/@XML_Node/XML_Node.m,
	  Cantera/matlab/cantera/@XML_Node/attrib.m,
	  Cantera/matlab/cantera/@XML_Node/build.m,
	  Cantera/matlab/cantera/@XML_Node/child.m,
	  Cantera/matlab/cantera/@XML_Node/hndl.m,
	  Cantera/matlab/cantera/@XML_Node/value.m,
	  Cantera/matlab/cantera/@XML_Node/write.m,
	  Cantera/matlab/cantera/@XML_Node/private/newxml.cpp,
	  Cantera/matlab/cantera/@XML_Node/private/xmlmethods.cpp,
	  Cantera/matlab/cantera/examples/equil.m,
	  Cantera/matlab/cantera/examples/ignite.m,
	  Cantera/matlab/cantera/examples/ignite2.m,
	  Cantera/matlab/cantera/examples/ignite3.m,
	  Cantera/matlab/cantera/examples/ignite_hp.m,
	  Cantera/matlab/cantera/examples/ignite_uv.m,
	  Cantera/matlab/cantera/examples/isentropic.m,
	  Cantera/matlab/cantera/examples/periodic_cstr.m,
	  Cantera/matlab/cantera/examples/prandtl1.m,
	  Cantera/matlab/cantera/examples/prandtl2.m,
	  Cantera/matlab/cantera/examples/reactor1.m,
	  Cantera/matlab/cantera/examples/reactor2.m,
	  Cantera/matlab/cantera/examples/run_examples.m,
	  Cantera/matlab/cantera/examples/transport1.m,
	  Cantera/matlab/cantera/private/ctfunctions.cpp,
	  Cantera/matlab/cantera/private/ctmatutils.h,
	  Cantera/matlab/cantera/private/ctmethods.cpp,
	  Cantera/matlab/cantera/private/flowdevicemethods.cpp,
	  Cantera/matlab/cantera/private/importFromFile.m,
	  Cantera/matlab/cantera/private/kineticsmethods.cpp,
	  Cantera/matlab/cantera/private/phasemethods.cpp,
	  Cantera/matlab/cantera/private/reactormethods.cpp,
	  Cantera/matlab/cantera/private/thermomethods.cpp,
	  Cantera/matlab/cantera/private/transportmethods.cpp,
	  Cantera/matlab/cantera/private/wallmethods.cpp,
	  Cantera/matlab/cantera/private/xmlmethods.cpp,
	  Cantera/matlab/cantera/tutorial/README,
	  Cantera/matlab/cantera/tutorial/tut1.m,
	  Cantera/matlab/cantera/tutorial/tut2.m,
	  Cantera/matlab/cantera/tutorial/tut3.m,
	  Cantera/matlab/cantera/tutorial/tut4.m,
	  Cantera/matlab/cantera/tutorial/tut5.m,
	  Cantera/matlab/cantera/tutorial/tut6.m,
	  Cantera/matlab/cantera/tutorial/tut7.m,
	  Cantera/python/.cvsignore, Cantera/python/Makefile.in,
	  Cantera/python/setup.py, Cantera/python/Cantera/__init__.py,
	  Cantera/python/Cantera/boundaries1D.py,
	  Cantera/python/Cantera/ck2ctml.py,
	  Cantera/python/Cantera/constants.py,
	  Cantera/python/Cantera/elements.py,
	  Cantera/python/Cantera/excel.py,
	  Cantera/python/Cantera/exceptions.py,
	  Cantera/python/Cantera/flame.py, apps/MixMaster/ImportFrame.py,
	  apps/MixMaster/KineticsFrame.py, apps/MixMaster/MechManager.py,
	  apps/MixMaster/Mix.py, apps/MixMaster/NewFlowFrame.py,
	  apps/MixMaster/SpeciesFrame.py, apps/MixMaster/SpeciesInfo.py,
	  apps/MixMaster/ThermoFrame.py, apps/MixMaster/ThermoProp.py,
	  apps/MixMaster/TransportFrame.py, apps/MixMaster/UnitChooser.py,
	  apps/MixMaster/gri30.py, apps/MixMaster/main.py,
	  apps/MixMaster/menu.py, apps/MixMaster/newflow.py,
	  apps/MixMaster/utilities.py, apps/MixMaster/Units/SI.py,
	  apps/MixMaster/Units/__init__.py, apps/MixMaster/Units/area.py,
	  apps/MixMaster/Units/density.py, apps/MixMaster/Units/energy.py,
	  apps/MixMaster/Units/force.py, apps/MixMaster/Units/length.py,
	  apps/MixMaster/Units/mass.py, apps/MixMaster/Units/power.py,
	  apps/MixMaster/Units/pressure.py,
	  apps/MixMaster/Units/specificEnergy.py,
	  apps/MixMaster/Units/specificEntropy.py,
	  apps/MixMaster/Units/speed.py,
	  apps/MixMaster/Units/temperature.py,
	  apps/MixMaster/Units/time.py, apps/MixMaster/Units/unit.py,
	  apps/MixMaster/Units/volume.py, bin/.cvsignore, bin/README,
	  bin/mixmaster.py, bin/rm_cvsignore,
	  Cantera/python/Cantera/Flow.py,
	  Cantera/python/Cantera/FlowBoundary.py,
	  Cantera/python/Cantera/FlowPlotter.py,
	  Cantera/python/Cantera/Func.py,
	  Cantera/python/Cantera/Interface.py,
	  Cantera/python/Cantera/Kinetics.py,
	  Cantera/python/Cantera/OneDim.py,
	  Cantera/python/Cantera/Phase.py,
	  Cantera/python/Cantera/Reactor.py,
	  Cantera/python/Cantera/SurfWriter.py,
	  Cantera/python/Cantera/SurfacePhase.py,
	  Cantera/python/Cantera/Thermo.py,
	  Cantera/python/Cantera/ThermoPhase.py,
	  Cantera/python/Cantera/Transport.py,
	  Cantera/python/Cantera/XML.py, Cantera/python/Cantera/gases.py,
	  Cantera/python/Cantera/importFromFile.py,
	  Cantera/python/Cantera/interp.py,
	  Cantera/python/Cantera/refine.py,
	  Cantera/python/Cantera/rxnpath.py,
	  Cantera/python/Cantera/schem.py, Cantera/python/Cantera/set.py,
	  Cantera/python/Cantera/solids.py,
	  Cantera/python/Cantera/solution.py,
	  Cantera/python/Cantera/solve.py,
	  Cantera/python/Cantera/stoich.py,
	  Cantera/python/Cantera/tecplot.py,
	  Cantera/python/Cantera/units.py,
	  Cantera/python/examples/flame1.py,
	  Cantera/python/examples/flame2.py,
	  Cantera/python/examples/isentropic.py,
	  Cantera/python/examples/reactor1.py,
	  Cantera/python/examples/reactor2.py,
	  Cantera/python/examples/rxnpath1.py,
	  Cantera/python/examples/rxnpath2.py,
	  Cantera/python/examples/stflame1.py,
	  Cantera/python/examples/stflame2.py,
	  Cantera/python/src/.cvsignore, Cantera/python/src/Makefile.in,
	  Cantera/python/src/cantera.def,
	  Cantera/python/src/canteramodule.cpp, Cantera/python/src/ct.def,
	  Cantera/python/src/ctbndry_methods.cpp,
	  Cantera/python/src/ctflow.cpp, Cantera/python/src/ctflow.def,
	  Cantera/python/src/ctflow_methods.cpp,
	  Cantera/python/src/ctfunc_methods.cpp,
	  Cantera/python/src/ctfuncs.cpp,
	  Cantera/python/src/ctkinetics.cpp,
	  Cantera/python/src/ctkinetics.def,
	  Cantera/python/src/ctkinetics_methods.cpp,
	  Cantera/python/src/ctmodule.cpp,
	  Cantera/python/src/ctnumerics.cpp,
	  Cantera/python/src/ctnumerics.def,
	  Cantera/python/src/ctphase.cpp, Cantera/python/src/ctphase.def,
	  Cantera/python/src/ctphase_methods.cpp,
	  Cantera/python/src/ctpy.cpp, Cantera/python/src/ctpybndry.cpp,
	  Cantera/python/src/ctpyfunc.cpp,
	  Cantera/python/src/ctpyreactor.cpp,
	  Cantera/python/src/ctpyrpath.cpp,
	  Cantera/python/src/ctpysurf.cpp, Cantera/python/src/ctpyxml.cpp,
	  Cantera/python/src/ctreactor_methods.cpp,
	  Cantera/python/src/ctrpath_methods.cpp,
	  Cantera/python/src/ctsurf.cpp, Cantera/python/src/ctsurf.def,
	  Cantera/python/src/ctsurf_methods.cpp,
	  Cantera/python/src/ctthermo.cpp, Cantera/python/src/ctthermo.def,
	  Cantera/python/src/ctthermo_methods.cpp,
	  Cantera/python/src/cttransport.cpp,
	  Cantera/python/src/cttransport.def,
	  Cantera/python/src/cttransport_methods.cpp,
	  Cantera/python/src/ctxml_methods.cpp,
	  Cantera/python/src/methods.h, Cantera/python/src/pycantera.cpp,
	  Cantera/python/src/pyutils.h,
	  Cantera/python/src/reactionpath.cpp,
	  Cantera/python/tutorial/tut1.py, Cantera/python/tutorial/tut2.py,
	  Cantera/python/tutorial/tut4.py, Cantera/src/.cvsignore,
	  Cantera/src/Array.h, Cantera/src/ArrayViewer.h,
	  Cantera/src/BandMatrix.cpp, Cantera/src/BandMatrix.h,
	  Cantera/src/ChemEquil.cpp, Cantera/src/ChemEquil.h,
	  Cantera/src/ConstDensityThermo.cpp,
	  Cantera/src/ConstDensityThermo.h, Cantera/src/config.h,
	  Cantera/src/CVode.cpp, Cantera/src/CVode.h,
	  Cantera/src/Constituents.cpp, Cantera/src/Constituents.h,
	  Cantera/src/DASPK.cpp, Cantera/src/DASPK.h,
	  Cantera/src/DenseMatrix.cpp, Cantera/src/DenseMatrix.h,
	  Cantera/src/EOS_TPX.h, Cantera/src/Elements.cpp,
	  Cantera/src/Elements.h, Cantera/src/Enhanced3BConc.h,
	  Cantera/src/FILES, Cantera/src/FalloffFactory.cpp,
	  Cantera/src/FalloffFactory.h, Cantera/src/FalloffMgr.h,
	  Cantera/src/Flow1D.h, Cantera/src/FtnODESys.h,
	  Cantera/src/Func1.h, Cantera/src/FuncEval.h, Cantera/src/GRI30.h,
	  Cantera/src/GRI_30_Kinetics.cpp, Cantera/src/GRI_30_Kinetics.h,
	  Cantera/src/GasKinetics.cpp, Cantera/src/GasKinetics.h,
	  Cantera/src/GasKineticsWriter.cpp,
	  Cantera/src/GasKineticsWriter.h, Cantera/src/Group.cpp,
	  Cantera/src/Group.h, Cantera/src/IdealGasPhase.cpp,
	  Cantera/src/IdealGasPhase.h, Cantera/src/IdealGasThermo.cpp,
	  Cantera/src/IdealGasThermo.h, Cantera/src/ImplicitChem.cpp,
	  Cantera/src/ImplicitChem.h, Cantera/src/ImplicitSurfChem.cpp,
	  Cantera/src/ImplicitSurfChem.h,
	  Cantera/src/IncompressibleThermo.h, Cantera/src/Integrator.h,
	  Cantera/src/InterfaceKinetics.cpp,
	  Cantera/src/InterfaceKinetics.h, Cantera/src/Jac2.h,
	  Cantera/src/Kinetics.h, Cantera/src/KineticsFactory.cpp,
	  Cantera/src/KineticsFactory.h, Cantera/src/L_matrix.h,
	  Cantera/src/MMCollisionInt.cpp, Cantera/src/Makefile.in,
	  Cantera/src/MixTransport.cpp, Cantera/src/MultiDomain.h,
	  Cantera/src/NasaPoly1.h, Cantera/src/NasaThermo.h,
	  Cantera/src/Newton.h, Cantera/src/Phase.cpp,
	  Cantera/src/ct_defs.h, Cantera/src/ctexceptions.h,
	  Cantera/src/ctlapack.h, Cantera/src/ctml.cpp, Cantera/src/ctml.h,
	  Cantera/src/ctvector.cpp, Cantera/src/ctvector.h,
	  Cantera/src/exceptions.h, Cantera/src/fitPoly.h,
	  Cantera/src/flowBoundaries.h, Cantera/src/funcs.cpp,
	  Cantera/src/gases.h, Cantera/src/global.h, Cantera/src/import.h,
	  Cantera/src/importCTML.cpp, Cantera/src/importCTML.h,
	  Cantera/src/importSurfChem.cpp, Cantera/src/importXML.h,
	  Cantera/src/lapack.h, Cantera/src/misc.cpp,
	  Cantera/src/mix_defs.h, Cantera/src/mix_utils.h,
	  Cantera/src/newton_utils.cpp, Cantera/src/Phase.h,
	  Cantera/src/PolyThermo.h, Cantera/src/PolyThermoMgr.h,
	  Cantera/src/PropertyCalculator.h, Cantera/src/PropertyUpdater.h,
	  Cantera/src/RateCoeffMgr.h, Cantera/src/ReactionData.h,
	  Cantera/src/ReactionPath.cpp, Cantera/src/ReactionPath.h,
	  Cantera/src/Resid.h, Cantera/src/Resid1D.h,
	  Cantera/src/ResidEval.h, Cantera/src/RxnRates.h,
	  Cantera/src/ShomatePoly.h, Cantera/src/ShomateThermo.h,
	  Cantera/src/SimpleThermo.h, Cantera/src/SpeciesThermo.h,
	  Cantera/src/SpeciesThermoFactory.cpp,
	  Cantera/src/SpeciesThermoFactory.h,
	  Cantera/src/SpeciesThermoMgr.h, Cantera/src/State.h,
	  Cantera/src/StoichManager.h, Cantera/src/Surf1D.h,
	  Cantera/src/SurfPhase.h, Cantera/src/Thermo.h,
	  Cantera/src/ThermoFactory.cpp, Cantera/src/ThermoFactory.h,
	  Cantera/src/ThermoPhase.cpp, Cantera/src/ThermoPhase.h,
	  Cantera/src/ThirdBodyMgr.h, Cantera/src/TigerPolynomial.h,
	  Cantera/src/plots.cpp, Cantera/src/plots.h,
	  Cantera/src/polyfit.h, Cantera/src/pureSubstances.h,
	  Cantera/src/reaction_defs.h, Cantera/src/recipes.h,
	  Cantera/src/sort.cpp, Cantera/src/sort.h,
	  Cantera/src/speciesThermoTypes.h, Cantera/src/stringUtils.cpp,
	  Cantera/src/stringUtils.h, Cantera/src/surfKinetics.cpp,
	  Cantera/src/surfKinetics.h, Cantera/src/surfacePhase.h,
	  Cantera/src/transportModels.h, Cantera/src/units.h,
	  Cantera/src/updaters.h, Cantera/src/utilities.h,
	  Cantera/src/vec_functions.h, Cantera/src/xml.cpp,
	  Cantera/src/xml.h, Cantera/src/converters/.cvsignore,
	  Cantera/src/converters/CKParser.cpp,
	  Cantera/src/converters/CKParser.h,
	  Cantera/src/converters/CKReader.cpp,
	  Cantera/src/converters/CKReader.h,
	  Cantera/src/converters/Constituent.h,
	  Cantera/src/converters/Element.h, Cantera/src/converters/Group.h,
	  Cantera/src/converters/Makefile.in,
	  Cantera/src/converters/Reaction.cpp,
	  Cantera/src/converters/Reaction.h,
	  Cantera/src/converters/RxnSpecies.h,
	  Cantera/src/converters/Species.h,
	  Cantera/src/converters/atomicWeightDB.cpp,
	  Cantera/src/converters/ck2ctml.cpp,
	  Cantera/src/converters/ck2ctml.h,
	  Cantera/src/converters/ckr_defs.h,
	  Cantera/src/converters/ckr_utils.cpp,
	  Cantera/src/converters/ckr_utils.h,
	  Cantera/src/converters/config.h,
	  Cantera/src/converters/filter.cpp,
	  Cantera/src/converters/thermoFunctions.cpp,
	  Cantera/src/converters/thermoFunctions.h,
	  Cantera/src/converters/writelog.cpp,
	  Cantera/src/converters/writelog.h, Cantera/src/oneD/.cvsignore,
	  Cantera/src/oneD/Inlet1D.h, Cantera/src/oneD/Jac1D.h,
	  Cantera/src/oneD/Makefile.in, Cantera/src/oneD/MultiJac.cpp,
	  Cantera/src/oneD/MultiJac.h, Cantera/src/oneD/MultiNewton.cpp,
	  Cantera/src/oneD/MultiNewton.h, Cantera/src/oneD/Newton1D.h,
	  Cantera/src/oneD/OneDim.cpp, Cantera/src/oneD/OneDim.h,
	  Cantera/src/oneD/Resid1D.h, Cantera/src/oneD/newton_utils.cpp,
	  Cantera/src/oneD/StFlow.cpp, Cantera/src/oneD/StFlow.h,
	  Cantera/src/oneD/Surf1D.h, Cantera/src/transport/.cvsignore,
	  Cantera/src/transport/FtnTransport.h,
	  Cantera/src/transport/MMCollisionInt.cpp,
	  Cantera/src/transport/MMCollisionInt.h,
	  Cantera/src/transport/Makefile.in,
	  Cantera/src/transport/MixTransport.cpp,
	  Cantera/src/transport/MixTransport.h,
	  Cantera/src/transport/MultiTransport.cpp,
	  Cantera/src/transport/MultiTransport.h,
	  Cantera/src/transport/TransportBase.h,
	  Cantera/src/transport/TransportFactory.cpp,
	  Cantera/src/transport/TransportFactory.h,
	  Cantera/src/transport/TransportParams.h,
	  Cantera/src/zeroD/.cvsignore, Cantera/src/zeroD/FlowDevice.cpp,
	  Cantera/src/zeroD/FlowDevice.h, Cantera/src/zeroD/Makefile.in,
	  Cantera/src/zeroD/PID_Controller.h,
	  Cantera/src/zeroD/Reactor.cpp, Cantera/src/zeroD/Reactor.h,
	  Cantera/src/zeroD/ReactorBase.cpp,
	  Cantera/src/zeroD/ReactorBase.h, Cantera/src/zeroD/Reservoir.h,
	  Cantera/src/zeroD/Wall.cpp, Cantera/src/zeroD/Wall.h,
	  Cantera/src/zeroD/flowControllers.h, config/.cvsignore,
	  config/Cantera.README, config/config.guess, config/config.h.in,
	  config/config.sub, config/configure, config/configure.in,
	  config/install-sh, data/README, data/inputs/.cvsignore,
	  data/inputs/air.inp, data/inputs/air.xml, data/inputs/argon.inp,
	  data/inputs/argon.xml, data/inputs/elements.xml,
	  data/inputs/gases.xml, data/inputs/Makefile.in,
	  data/inputs/gri30.inp, data/inputs/gri30.xml,
	  data/inputs/gri30mod.inp, data/inputs/grinc.inp,
	  data/inputs/h2o2.inp, data/inputs/h2o2.xml,
	  data/inputs/h2o2_noch.inp, data/inputs/mkxml,
	  data/inputs/silane.inp, data/inputs/silane.xml,
	  data/thermo/nasathermo.dat, data/transport/gri30_tran.dat,
	  examples/.cvsignore, examples/Makefile.in,
	  examples/cxx/.cvsignore, examples/cxx/Makefile.in,
	  examples/cxx/equil_example1.cpp, examples/cxx/example_utils.h,
	  examples/cxx/examples.cpp, examples/cxx/examples.dsp,
	  examples/cxx/kinetics_example1.cpp,
	  examples/cxx/kinetics_example2.cpp,
	  examples/cxx/rxnpath_example1.cpp,
	  examples/cxx/transport_example1.cpp,
	  examples/cxx/transport_example2.cpp, ext/.cvsignore,
	  ext/Makefile.in, ext/blas/.cvsignore, ext/blas/dasum.f,
	  ext/blas/daxpy.f, ext/blas/dcabs1.f, ext/blas/dcopy.f,
	  ext/blas/ddot.f, ext/blas/dgbmv.f, ext/blas/dgemm.f,
	  ext/blas/dgemv.f, ext/blas/dger.f, ext/blas/dnrm2.f,
	  ext/blas/drot.f, ext/blas/drotg.f, ext/blas/drotm.f,
	  ext/blas/drotmg.f, ext/blas/dsbmv.f, ext/blas/dscal.f,
	  ext/blas/dsdot.f, ext/blas/dspmv.f, ext/blas/dspr.f,
	  ext/blas/dspr2.f, ext/blas/dswap.f, ext/blas/dsymm.f,
	  ext/blas/dsymv.f, ext/blas/dsyr.f, ext/blas/dsyr2.f,
	  ext/blas/dsyr2k.f, ext/blas/dsyrk.f, ext/blas/dtbmv.f,
	  ext/blas/dtbsv.f, ext/blas/dtpmv.f, ext/blas/dtpsv.f,
	  ext/blas/dtrmm.f, ext/blas/dtrmv.f, ext/blas/Makefile.in,
	  ext/blas/dtrsm.f, ext/blas/dtrsv.f, ext/blas/dzasum.f,
	  ext/blas/dznrm2.f, ext/blas/icamax.f, ext/blas/idamax.f,
	  ext/blas/isamax.f, ext/blas/izamax.f, ext/blas/lsame.f,
	  ext/blas/xerbla.f, ext/cvode/.cvsignore, ext/cvode/Makefile.in,
	  ext/cvode/include/band.h, ext/cvode/include/cvband.h,
	  ext/cvode/include/cvbandpre.h, ext/cvode/include/cvdense.h,
	  ext/cvode/include/cvdiag.h, ext/cvode/include/cvode.h,
	  ext/cvode/include/cvspgmr.h, ext/cvode/include/dense.h,
	  ext/cvode/include/iterativ.h, ext/cvode/include/llnlmath.h,
	  ext/cvode/include/llnltyps.h, ext/cvode/include/nvector.h,
	  ext/cvode/include/spgmr.h, ext/cvode/source/band.c,
	  ext/cvode/source/cvband.c, ext/cvode/source/cvbandpre.c,
	  ext/cvode/source/cvdense.c, ext/cvode/source/cvdiag.c,
	  ext/cvode/source/cvode.c, ext/cvode/source/cvspgmr.c,
	  ext/cvode/source/dense.c, ext/cvode/source/iterativ.c,
	  ext/cvode/source/llnlmath.c, ext/cvode/source/nvector.c,
	  ext/cvode/source/spgmr.c, ext/lapack/.cvsignore,
	  ext/lapack/Makefile.in, ext/lapack/dbdsqr.f, ext/lapack/dgbsv.f,
	  ext/lapack/dgbtf2.f, ext/lapack/dgbtrf.f, ext/lapack/dgbtrs.f,
	  ext/lapack/dgebd2.f, ext/lapack/dgebrd.f, ext/lapack/dgelq2.f,
	  ext/lapack/dgelqf.f, ext/lapack/dgelss.f, ext/lapack/dgeqr2.f,
	  ext/lapack/dgeqrf.f, ext/lapack/dgetf2.f, ext/lapack/dgetrf.f,
	  ext/lapack/dgetri.f, ext/lapack/dgetrs.f, ext/lapack/dlabad.f,
	  ext/lapack/dlabrd.f, ext/lapack/dlacpy.f, ext/lapack/dlamch.f,
	  ext/lapack/dlange.f, ext/lapack/dlapy2.f, ext/lapack/dlarf.f,
	  ext/lapack/dlarfb.f, ext/lapack/dlarfg.f, ext/lapack/dlarft.f,
	  ext/lapack/dlartg.f, ext/lapack/dlas2.f, ext/lapack/dlascl.f,
	  ext/lapack/dlaset.f, ext/lapack/dlasq1.f, ext/lapack/dlasq2.f,
	  ext/lapack/dlasq3.f, ext/lapack/dlasq4.f, ext/lapack/dlasr.f,
	  ext/lapack/dlasrt.f, ext/lapack/dlassq.f, ext/lapack/dlasv2.f,
	  ext/lapack/dlaswp.f, ext/lapack/dorg2r.f, ext/lapack/dorgbr.f,
	  ext/lapack/dorgl2.f, ext/lapack/dorglq.f, ext/lapack/dorgqr.f,
	  ext/lapack/dorm2r.f, ext/lapack/dormbr.f, ext/lapack/dorml2.f,
	  ext/lapack/dormlq.f, ext/lapack/dormqr.f, ext/lapack/drscl.f,
	  ext/lapack/ilaenv.f, ext/lapack/lsame.f, ext/lapack/xerbla.f,
	  ext/math/.cvsignore, ext/math/cblas.h, ext/math/daux.f,
	  ext/math/Makefile.in, ext/math/ddaspk.f, ext/math/dgbefa.f,
	  ext/math/dgbsl.f, ext/math/dgefa.f, ext/math/dgesl.f,
	  ext/math/dp1vlu.f, ext/math/dpcoef.f, ext/math/dpolft.f,
	  ext/math/fdump.f, ext/math/gmres.h, ext/math/idamax.f,
	  ext/math/j4save.f, ext/math/mach.cpp, ext/math/mkl_cblas.h,
	  ext/math/pcoef.f, ext/math/polfit.f, ext/math/pvalue.f,
	  ext/math/xercnt.f, ext/math/xerhlt.f, ext/math/xermsg.f,
	  ext/math/xerprn.f, ext/math/xersve.f, ext/math/xgetua.f,
	  ext/recipes/.cvsignore, ext/recipes/Makefile.in,
	  ext/recipes/simp1.f, ext/recipes/simp2.f, ext/recipes/simp3.f,
	  ext/recipes/simplx.f, ext/recipes/splie2.f, ext/recipes/splin2.f,
	  ext/recipes/spline.f, ext/recipes/splint.f, ext/tpx/.cvsignore,
	  ext/tpx/.depends, ext/tpx/CFluid.cpp, ext/tpx/CFluid.h,
	  ext/tpx/CGas.cpp, ext/tpx/CLK.cpp, ext/tpx/CLK.h,
	  ext/tpx/HFC134a.cpp, ext/tpx/HFC134a.h, ext/tpx/Hydrogen.cpp,
	  ext/tpx/Hydrogen.h, ext/tpx/Makefile.in, ext/tpx/Methane.cpp,
	  ext/tpx/Methane.h, ext/tpx/Nitrogen.cpp, ext/tpx/Nitrogen.h,
	  ext/tpx/Oxygen.cpp, ext/tpx/Oxygen.h, ext/tpx/ck_gas.cpp,
	  ext/tpx/ck_gas.h, ext/tpx/ideal.cpp, ext/tpx/lk.cpp,
	  ext/tpx/lk.h, ext/tpx/lkw.cpp, ext/tpx/lkw.h, ext/tpx/mix.h,
	  ext/tpx/Sub.cpp, ext/tpx/Sub.h, ext/tpx/Water.cpp,
	  ext/tpx/Water.h, ext/tpx/subs.h, ext/tpx/utils.cpp,
	  ext/tpx/utils.h, include/Cantera.h, include/IdealGasMix.h,
	  include/README, include/config.h, include/core.h, include/ctml.h,
	  include/equilibrium.h, include/ftn_defs.h, include/integrators.h,
	  include/kinetics.h, include/numerics.h, include/onedim.h,
	  include/surface.h, include/transport.h,
	  include/fortran/ctfdevmod.f, include/fortran/ctkineticsmod.f,
	  include/fortran/ctmixturemod.f, include/fortran/ctmod.f,
	  include/fortran/ctreactormod.f, include/fortran/ctthermomod.f,
	  include/fortran/cttransportmod.f, include/fortran/ctutilsmod.f,
	  lib/README, test_problems/.cvsignore, test_problems/Makefile.in,
	  test_problems/cxx_ex/.cvsignore,
	  test_problems/cxx_ex/eq1_blessed.csv,
	  test_problems/cxx_ex/eq1_blessed.dat,
	  test_problems/cxx_ex/gri30.inp, test_problems/cxx_ex/gri30.xml,
	  test_problems/cxx_ex/gri30_tran.dat,
	  test_problems/cxx_ex/gri30mod.inp,
	  test_problems/cxx_ex/Makefile.in,
	  test_problems/cxx_ex/kin1_blessed.csv,
	  test_problems/cxx_ex/kin2_blessed.csv,
	  test_problems/cxx_ex/runtest, test_problems/cxx_ex/silane.inp,
	  test_problems/cxx_ex/silane.xml,
	  test_problems/cxx_ex/tr1_blessed.csv,
	  test_problems/cxx_ex/tr2_blessed.csv,
	  test_problems/silane_equil/.cvsignore,
	  test_problems/silane_equil/Makefile.in,
	  test_problems/silane_equil/output_blessed.txt,
	  test_problems/silane_equil/runtest,
	  test_problems/silane_equil/silane.xml,
	  test_problems/silane_equil/silane_equil.cpp, tools/.cvsignore,
	  tools/Makefile.in, tools/export, tools/bin/ctupdate.py,
	  tools/bin/finish_install.py, tools/src/.cvsignore,
	  tools/src/Makefile.in, tools/src/ck2ctml.cpp,
	  tools/src/ck2ctml.dsp, tools/src/ctlibsample.mak.in,
	  tools/src/ctsetup.cpp, tools/src/ctsetup.in, tools/src/ctwin,
	  tools/src/makedsp.cpp, tools/src/newdsp.cpp, tools/src/proto.dsp,
	  tools/src/protocvf.dsp, tools/src/protocxx.cpp,
	  tools/src/protocxx.dsp, tools/src/sample.mak.in,
	  tools/src/sample_f90.mak.in, tools/src/validate.cpp,
	  tools/templates/f77/demo.f, tools/templates/f77/demo_ftnlib.cpp,
	  tools/templates/f77/sample.mak.in, tools/testtools/.cvsignore,
	  tools/testtools/Makefile.in, tools/testtools/csvdiff.cpp,
	  tools/testtools/mdp_allo.cpp, tools/testtools/mdp_allo.h,
	  tools/testtools/tok_input_util.cpp,
	  tools/testtools/tok_input_util.h: Initial revision

2003-04-14 10:11  root

	* CVSROOT/: checkoutlist, commitinfo, config, cvswrappers,
	  editinfo, loginfo, modules, notify, rcsinfo, taginfo, verifymsg:
	  initial checkin

