Commit graph

97 commits

Author SHA1 Message Date
Henry Weller
b11b28db06 surfaceFilmModels::transferModelList: Resolve problem with the Intel C++ compiler 2017-07-25 12:19:37 +01:00
Henry Weller
0c4175bec7 surfaceFilmModels: 0.333 -> 1.0/3.0 and 0.666 -> 2.0/3.0
Resolves bug-report https://bugs.openfoam.org/view.php?id=2629
2017-07-21 17:38:31 +01:00
Henry Weller
53a524a280 Simplified scalar(0.0) -> scalar(0) and scalar(1.0) -> scalar(1) 2017-07-21 17:37:37 +01:00
Henry Weller
1937f7bca2 Radiation: Renamed Qin -> qin, Qem -> qem for consistency with qr
See also commit 8aac0a1808
2017-07-21 09:25:52 +01:00
Henry Weller
177d1d762c reactingOneDim: Correct reporting of temperature range in parallel
Patch Contributed by Karl Meredith, FM Global.
Resolves bug-report https://bugs.openfoam.org/view.php?id=2621
2017-07-19 12:45:23 +01:00
Henry Weller
4d6a47972f surfaceFilmModels::phaseChange: Updated energy transfer for consistency energy equation
Currently heat is assumed to be removed by heat-transfer to the wall so the
energy remains unchanged by the phase-change.  This approximation can only be
removed if the interface to the transfer models is extended to support transfers
to and from the film AND the primary region.
2017-07-12 14:30:38 +01:00
Henry Weller
784d28d440 thermoSingleLayer::q: Use a local "alpha" without hydrophilic/phobic adjustment
Resolves bug-report https://bugs.openfoam.org/view.php?id=2605
2017-07-10 08:25:09 +01:00
Henry Weller
7c301dbff4 Parallel IO: New collated file format
When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor.  Processor directories are named 'processorN',
where N is the processor number.

This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor.  The files are stored in a single
directory named 'processors'.

The new format produces significantly fewer files - one per field, instead of N
per field.  For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.

The file writing can be threaded allowing the simulation to continue running
while the data is being written to file.  NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".

The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:

OptimisationSwitches
{
    ...

    //- Parallel IO file handler
    //  uncollated (default), collated or masterUncollated
    fileHandler uncollated;

    //- collated: thread buffer size for queued file writes.
    //  If set to 0 or not sufficient for the file size threading is not used.
    //  Default: 2e9
    maxThreadFileBufferSize 2e9;

    //- masterUncollated: non-blocking buffer size.
    //  If the file exceeds this buffer size scheduled transfer is used.
    //  Default: 2e9
    maxMasterFileBufferSize 2e9;
}

When using the collated file handling, memory is allocated for the data in the
thread.  maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated.  If the data exceeds this size, the write does not use threading.

When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer.  If the
data exceeds this size, the system uses scheduled communication.

The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters.  Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.

A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
    mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated

An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling

The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
2017-07-07 11:39:56 +01:00
Henry Weller
2d866e281b compressibleInterFilmFoam::VoFPatchTransfer: corrected parallel handling of all patch option 2017-06-28 15:03:40 +01:00
Henry Weller
791cc32c45 kinematicSingleLayer: Updated primaryMassTrans() 2017-06-28 11:25:38 +01:00
Henry Weller
2a6601e1ca surfaceFilmModels::transferModels: Now defaults to a null list for backward-compatibility 2017-06-27 21:45:53 +01:00
Henry Weller
d74f354f0c compressibleInterFilmFoam: Experimental VoF solver supporting VoF<->film transfer 2017-06-27 15:55:43 +01:00
Henry Weller
9801c25788 The "<type>Coeffs" sub-dictionary is now optional for most model parameters
except turbulence and lagrangian which will also be updated shortly.

For example in the nonNewtonianIcoFoam offsetCylinder tutorial the viscosity
model coefficients may be specified in the corresponding "<type>Coeffs"
sub-dictionary:

transportModel  CrossPowerLaw;

CrossPowerLawCoeffs
{
    nu0         [0 2 -1 0 0 0 0]  0.01;
    nuInf       [0 2 -1 0 0 0 0]  10;
    m           [0 0 1 0 0 0 0]   0.4;
    n           [0 0 0 0 0 0 0]   3;
}

BirdCarreauCoeffs
{
    nu0         [0 2 -1 0 0 0 0]  1e-06;
    nuInf       [0 2 -1 0 0 0 0]  1e-06;
    k           [0 0 1 0 0 0 0]   0;
    n           [0 0 0 0 0 0 0]   1;
}

which allows a quick change between models, or using the simpler

transportModel  CrossPowerLaw;

nu0         [0 2 -1 0 0 0 0]  0.01;
nuInf       [0 2 -1 0 0 0 0]  10;
m           [0 0 1 0 0 0 0]   0.4;
n           [0 0 0 0 0 0 0]   3;

if quick switching between models is not required.

To support this more convenient parameter specification the inconsistent
specification of seedSampleSet in the streamLine and wallBoundedStreamLine
functionObjects had to be corrected from

    // Seeding method.
    seedSampleSet   uniform;  //cloud; //triSurfaceMeshPointSet;

    uniformCoeffs
    {
        type        uniform;
        axis        x;  //distance;

        // Note: tracks slightly offset so as not to be on a face
        start       (-1.001 -0.05 0.0011);
        end         (-1.001 -0.05 1.0011);
        nPoints     20;
    }

to the simpler

    // Seeding method.
    seedSampleSet
    {
        type        uniform;
        axis        x;  //distance;

        // Note: tracks slightly offset so as not to be on a face
        start       (-1.001 -0.05 0.0011);
        end         (-1.001 -0.05 1.0011);
        nPoints     20;
    }

which also support the "<type>Coeffs" form

    // Seeding method.
    seedSampleSet
    {
        type        uniform;

        uniformCoeffs
        {
            axis        x;  //distance;

            // Note: tracks slightly offset so as not to be on a face
            start       (-1.001 -0.05 0.0011);
            end         (-1.001 -0.05 1.0011);
            nPoints     20;
        }
    }
2017-04-20 09:14:48 +01:00
Henry Weller
8aac0a1808 radiation: Corrected the name of the radiative heat flux from Qr to qr
The standard naming convention for heat flux is "q" and this is used for the
conductive and convective heat fluxes is OpenFOAM.  The use of "Qr" for
radiative heat flux is an anomaly which causes confusion, particularly for
boundary conditions in which "Q" is used to denote power in Watts.  The name of
the radiative heat flux has now been corrected to "qr" and all models, boundary
conditions and tutorials updated.
2017-04-08 22:23:40 +01:00
Henry Weller
4d5505d3ef surfaceFilmModels::perturbedTemperatureDependentContactAngleForce: New contact angle model
Combining a Function1 temperature dependency with a distributionModel stochastic
perturbation.
2017-04-04 00:09:38 +01:00
Henry Weller
a4eee79496 surfaceFilmModels::contactAngleForces: Provide empty list default value for zeroForcePatches 2017-03-31 22:33:41 +01:00
Henry Weller
05d945c9ce surfaceFilmModels::contactAngleForce: Use of boundary values of surface tension and contact angle 2017-03-31 20:46:52 +01:00
Henry Weller
f00542be8c regionModels: Renamed owner->region in regionModel and owner->film in surfaceFilmModel
This update does not change the operation or controls of the regionModels, it is
to aid understanding of the code.
2017-03-28 08:30:46 +01:00
Henry Weller
91c452d8e5 surfaceFilmModels::contactAngleForces: Corrected headers 2017-03-27 20:07:47 +01:00
Henry Weller
cb1faea3f4 surfaceFilmModels::contactAngleForce: Added temperatureDependentContactAngleForce
Created a base-class from contactAngleForce from which the
distributionContactAngleForce (for backward compatibility) and the new
temperatureDependentContactAngleForce are derived:

Description
    Temperature dependent contact angle force

    The contact angle in degrees is specified as a \c Function1 type, to
    enable the use of, e.g.  contant, polynomial, table values.

See also
    Foam::regionModels::surfaceFilmModels::contactAngleForce
    Foam::Function1Types

SourceFiles
    temperatureDependentContactAngleForce.C
2017-03-27 20:03:28 +01:00
Henry Weller
bda41c441c Diffusion number: Corrected in chtMultiRegionFoam and pyrolysisModels::reactingOneDim
Resolves bug-report https://bugs.openfoam.org/view.php?id=2512
2017-03-22 17:13:53 +00:00
Henry Weller
80123f59ce thermophysicalProperties: New base-class for liquidProperties and in the future gasProperties
Description
    Base-class for thermophysical properties of solids, liquids and gases
    providing an interface compatible with the templated thermodynamics
    packages.

liquidProperties, solidProperties and thermophysicalFunction libraries have been
combined with the new thermophysicalProperties class into a single
thermophysicalProperties library to simplify compilation and linkage of models,
libraries and applications dependent on these classes.
2017-02-18 21:53:20 +00:00
Henry Weller
abc50e214c thermophysicalModels: Changed specie thermodynamics from mole to mass basis
The fundamental properties provided by the specie class hierarchy were
mole-based, i.e. provide the properties per mole whereas the fundamental
properties provided by the liquidProperties and solidProperties classes are
mass-based, i.e. per unit mass.  This inconsistency made it impossible to
instantiate the thermodynamics packages (rhoThermo, psiThermo) used by the FV
transport solvers on liquidProperties.  In order to combine VoF with film and/or
Lagrangian models it is essential that the physical propertied of the three
representations of the liquid are consistent which means that it is necessary to
instantiate the thermodynamics packages on liquidProperties.  This requires
either liquidProperties to be rewritten mole-based or the specie classes to be
rewritten mass-based.  Given that most of OpenFOAM solvers operate
mass-based (solve for mass-fractions and provide mass-fractions to sub-models it
is more consistent and efficient if the low-level thermodynamics is also
mass-based.

This commit includes all of the changes necessary for all of the thermodynamics
in OpenFOAM to operate mass-based and supports the instantiation of
thermodynamics packages on liquidProperties.

Note that most users, developers and contributors to OpenFOAM will not notice
any difference in the operation of the code except that the confusing

    nMoles     1;

entries in the thermophysicalProperties files are no longer needed or used and
have been removed in this commet.  The only substantial change to the internals
is that species thermodynamics are now "mixed" with mass rather than mole
fractions.  This is more convenient except for defining reaction equilibrium
thermodynamics for which the molar rather than mass composition is usually know.
The consequence of this can be seen in the adiabaticFlameT, equilibriumCO and
equilibriumFlameT utilities in which the species thermodynamics are
pre-multiplied by their molecular mass to effectively convert them to mole-basis
to simplify the definition of the reaction equilibrium thermodynamics, e.g. in
equilibriumCO

    // Reactants (mole-based)
    thermo FUEL(thermoData.subDict(fuelName)); FUEL *= FUEL.W();

    // Oxidant (mole-based)
    thermo O2(thermoData.subDict("O2")); O2 *= O2.W();
    thermo N2(thermoData.subDict("N2")); N2 *= N2.W();

    // Intermediates (mole-based)
    thermo H2(thermoData.subDict("H2")); H2 *= H2.W();

    // Products (mole-based)
    thermo CO2(thermoData.subDict("CO2")); CO2 *= CO2.W();
    thermo H2O(thermoData.subDict("H2O")); H2O *= H2O.W();
    thermo CO(thermoData.subDict("CO")); CO *= CO.W();

    // Product dissociation reactions

    thermo CO2BreakUp
    (
        CO2 == CO + 0.5*O2
    );

    thermo H2OBreakUp
    (
        H2O == H2 + 0.5*O2
    );

Please report any problems with this substantial but necessary rewrite of the
thermodynamic at https://bugs.openfoam.org

Henry G. Weller
CFD Direct Ltd.
2017-02-17 11:22:14 +00:00
Henry Weller
4b251034d3 Removed unhelpful clutter 2017-01-26 17:47:24 +00:00
Henry Weller
1a2c77abfa Rationalized heat release rate functions
Combined 'dQ()' and 'Sh()' into 'Qdot()' which returns the heat-release rate in
the normal units [kg/m/s3] and used as the heat release rate source term in
the energy equations, to set the field 'Qdot' in several combustion solvers
and for the evaluation of the local time-step when running LTS.
2016-12-15 17:10:21 +00:00
Henry Weller
4a45e4f519 thermalBaffle: ensure mappedPatchBase is updated following mesh topology changes
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2323
2016-12-05 08:44:43 +00:00
Henry Weller
ea67173330 Updated member type comments
Resolves bug-report http://bugs.openfoam.org/view.php?id=2356
2016-11-28 21:23:00 +00:00
Henry Weller
48e3fb7805 Allwmake: Remove 'set -x' which generates a lot of noise
'set -x' should be used for debugging.

Added command printing into wmake and Allwmake as a replacement for
'set -x' to log current target.
2016-11-13 18:08:22 +00:00
Henry Weller
4603a8b253 fvPatchFields: Constructors from dictionary now call the corresponding constructor of the fvPatchField base-class
to ensure 'patchType' is set as specified.

Required substantial change to the organization of the reading of the
'value' entry requiring careful testing and there may be some residual
issues remaining.  Please report any problems with the reading and
initialization of patch fields.

Resolves bug-report http://bugs.openfoam.org/view.php?id=2266
2016-09-25 09:11:53 +01:00
Henry Weller
7656c076c8 C++11: Replaced the C NULL with the safer C++11 nullptr
Requires gcc version 4.7 or higher
2016-08-05 17:19:38 +01:00
Henry Weller
d439ec4d04 BrunDrippingInjection: Corrected default type of deltaStable 2016-08-05 08:26:45 +01:00
Henry Weller
454df8426d BrunDrippingInjection: Simplified implementation 2016-08-04 15:20:53 +01:00
Henry Weller
8d564f1b04 BrunDrippingInjection: Calculate drop diameter from the capillary length
The diameter of the drops formed are obtained from the local capillary
length multiplied by the \c dCoeff coefficient which defaults to 3.3.

Reference:
    Lefebvre, A. (1988).
    Atomization and sprays
    (Vol. 1040, No. 2756). CRC press.
2016-08-04 15:02:51 +01:00
Henry Weller
1d4bedae68 surfaceFilmModels::BrunDrippingInjection: New dripping model based on the Rayleigh-Taylor stability analysis
of film flow on an inclined plane by Brun et.al.

    Brun, P. T., Damiano, A., Rieu, P., Balestra, G., & Gallaire, F. (2015).
    Rayleigh-Taylor instability under an inclined plane.
    Physics of Fluids (1994-present), 27(8), 084107.
2016-08-02 21:35:37 +01:00
Henry Weller
cabe698d5f DimensionedField<scalar, volMesh> -> volScalarField::Internal
DimensionedField<vector, volMesh> -> volVectorField::Internal
2016-08-01 14:28:54 +01:00
Henry Weller
2cb97ec2ef wmake/Allwmake: Completed support for targetType 'objects'
Patch contributed by Mattijs Janssens
2016-06-24 15:25:11 +01:00
Henry Weller
9f67acdc53 Updated header documentation processed by Doxygen 2016-06-19 21:23:54 +01:00
Henry Weller
8a5304edf6 Doxygen documentation: Standardized the 'See also' heading 2016-06-17 17:31:34 +01:00
Henry Weller
2ca0a6f362 Doxygen documentation: Use the standard 'Usage' rather than the '\heading....' 2016-06-17 17:22:24 +01:00
Henry Weller
19ef39741b Simplify and correct Doxygen lists using '-' rather than '\li \c' 2016-06-16 20:10:39 +01:00
Henry Weller
608da26c5d thermoSingleLayer: Provide better stabilization for the energy equation as delta -> 0 2016-05-25 18:12:07 +01:00
Henry Weller
e22c65dd8e Standardized the selection of required and optional fields in BCs, fvOptions, functionObjects etc.
In most boundary conditions, fvOptions etc. required and optional fields
to be looked-up from the objectRegistry are selected by setting the
keyword corresponding to the standard field name in the BC etc. to the
appropriate name in the objectRegistry.  Usually a default is provided
with sets the field name to the keyword name, e.g. in the
totalPressureFvPatchScalarField the velocity is selected by setting the
keyword 'U' to the appropriate name which defaults to 'U':

        Property     | Description             | Required    | Default value
        U            | velocity field name     | no          | U
        phi          | flux field name         | no          | phi
        .
        .
        .

However, in some BCs and functionObjects and many fvOptions another
convention is used in which the field name keyword is appended by 'Name'
e.g.

        Property     | Description             | Required    | Default value
        pName        | pressure field name     | no          | p
        UName        | velocity field name     | no          | U

This difference in convention is unnecessary and confusing, hinders code
and dictionary reuse and complicates code maintenance.  In this commit
the appended 'Name' is removed from the field selection keywords
standardizing OpenFOAM on the first convention above.
2016-05-21 20:28:20 +01:00
Henry Weller
4500971827 Further standardization of loop index naming: pointI -> pointi, patchI -> patchi 2016-05-18 21:20:42 +01:00
Henry Weller
758dfc2c1f Standardized the naming of functions which control the writing of fields etc.
to have the prefix 'write' rather than 'output'

So outputTime() -> writeTime()

but 'outputTime()' is still supported for backward-compatibility.

Also removed the redundant secondary-writing functionality from Time
which has been superseded by the 'writeRegisteredObject' functionObject.
2016-05-12 17:38:01 +01:00
Henry Weller
f83975a701 functionObjects: Moved into the functionObjects namespace and rationalized and simplified failable construction
Rather than requiring each functionObject to handle failed construction
internally (using the active_ flag) the static member function "viable"
is provided which returns true if construction of the functionObject is
likely to be successful.  Failed construction is then handled by the
wrapper-class which constructs the functionObject,
e.g. "OutputFilterFunctionObject".
2016-05-02 16:28:24 +01:00
Henry Weller
4da46e7cd9 Updated headers 2016-04-30 21:53:19 +01:00
Henry Weller
fe43b80536 GeometricField: Renamed internalField() -> primitiveField() and dimensionedInternalField() -> internalField()
These new names are more consistent and logical because:

primitiveField():
primitiveFieldRef():
    Provides low-level access to the Field<Type> (primitive field)
    without dimension or mesh-consistency checking.  This should only be
    used in the low-level functions where dimensional consistency is
    ensured by careful programming and computational efficiency is
    paramount.

internalField():
internalFieldRef():
    Provides access to the DimensionedField<Type, GeoMesh> of values on
    the internal mesh-type for which the GeometricField is defined and
    supports dimension and checking and mesh-consistency checking.
2016-04-30 21:40:09 +01:00
Henry Weller
e1e996746b GeometricField::internalField() -> GeometricField::internalFieldRef()
Non-const access to the internal field now obtained from a specifically
named access function consistent with the new names for non-canst access
to the boundary field boundaryFieldRef() and dimensioned internal field
dimensionedInternalFieldRef().

See also commit a4e2afa4b3
2016-04-30 14:25:21 +01:00
Henry Weller
0a01f70653 Remove .internalField() clutter for const-access to the internal field 2016-04-28 12:37:31 +01:00
Henry Weller
75ea76187b GeometricField::GeometricBoundaryField -> GeometricField::Boundary
When the GeometricBoundaryField template class was originally written it
was a separate class in the Foam namespace rather than a sub-class of
GeometricField as it is now.  Without loss of clarity and simplifying
code which access the boundary field of GeometricFields it is better
that GeometricBoundaryField be renamed Boundary for consistency with the
new naming convention for the type of the dimensioned internal field:
Internal, see commit a25a449c9e

This is a very simple text substitution change which can be applied to
any code which compiles with the OpenFOAM-dev libraries.
2016-04-28 07:22:02 +01:00