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Author SHA1 Message Date
Henry Weller
78e7952bfc PatchToPatchInterpolate: Update to use the tmp ref() non-const access function 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2248
 2016-09-16 14:49:50 +01:00
Henry Weller
b4bf4be700 GAMGAgglomeration: corrected continueAgglomerating 
Patch provided by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2226
 2016-09-16 11:10:03 +01:00
Henry Weller
47811eae8e rigidBodyMotion: Change the transform averaging to use approximate inverse-distance weighting 
Now works correctly for an arbitrary number of bodies
Resolves bug-report http://bugs.openfoam.org/view.php?id=2211
 2016-09-14 14:14:14 +01:00
Henry Weller
2c90bd2ee6 rigidBodyMeshMotionSolver: experimental nDoF mesh-motion solver supporting the displacement-based elliptic solvers 
Specification for the tutorials/multiphase/interDyMFoam/ras/floatingObject case:

dynamicFvMesh       dynamicMotionSolverFvMesh;

motionSolverLibs   ("librigidBodyMeshMotion.so" "libfvMotionSolvers.so");

solver             rigidBodyMotionSolver;

rigidBodyMotionSolverCoeffs
{
    report          on;

    meshSolver
    {
        solver displacementLaplacian;

        displacementLaplacianCoeffs
        {
            diffusivity inverseDistance (floatingObject);
        }
    }
.
.
.
 2016-09-14 09:59:02 +01:00
Henry Weller
a28370dda1 MGridGenGAMGAgglomeration: Update call to continueAgglomerating 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2244
 2016-09-14 09:41:03 +01:00
Henry Weller
a7210ecb1a GAMGSolverSolve: Replace PBiCG with PBiCGStab to solve the coarsest-level of asymmetric matrices 2016-09-10 16:44:01 +01:00
Henry Weller
017281a116 combustionModels/FSD: Corrected 
Renamed 'omega' to 'FSDomega' to avoid a clash with the k-omega
turbulence models.

Resolves bug-report http://bugs.openfoam.org/view.php?id=2237
 2016-09-09 16:23:28 +01:00
Henry Weller
7531b2a4be renumberMethods: Added missing .C file for structuredRenumber 2016-09-09 14:54:12 +01:00
Henry Weller
52323f8dd1 codedFvOption: Added cellSet support 
Patch provided by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2240
 2016-09-09 12:29:06 +01:00
Henry Weller
648c777dd0 structuredRenumber: Corrected to run in parallel 
Patch contributed by Mattijs Janssens
 2016-09-09 12:20:25 +01:00
Henry Weller
758d76c795 functionObjectList::readFunctionObject: Added support for region specification 
Now the postProcess utility '-region' option works correctly, e.g. for
the chtMultiRegionSimpleFoam/heatExchanger case

postProcess -region air -func "mag(U)"

calculates 'mag(U)' for all the time steps in region 'air'.
 2016-09-09 11:01:37 +01:00
Henry Weller
faa6d0e4da GAMGAgglomeration: Add support for nCellsInCoarsestLevel = 1 and better agglomeration termination 
Patch provided by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2226
 2016-09-06 13:29:05 +01:00
Henry Weller
4232f90093 algebraicPairGAMGAgglomeration: agglomerate based on the maximum of the upper and lower coefficients 
Patch provided by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2234
 2016-09-06 12:56:54 +01:00
Henry Weller
cec98b2985 Solvers: Corrected typo 2016-09-05 11:58:41 +01:00
Henry Weller
bebab24133 Updated header 2016-09-05 11:57:41 +01:00
Henry Weller
c339d3018c PBiCGStab: New preconditioned bi-conjugate gradient stabilized solver for asymmetric lduMatrices 
using a run-time selectable preconditioner

References:
    Van der Vorst, H. A. (1992).
    Bi-CGSTAB: A fast and smoothly converging variant of Bi-CG
    for the solution of nonsymmetric linear systems.
    SIAM Journal on scientific and Statistical Computing, 13(2), 631-644.

    Barrett, R., Berry, M. W., Chan, T. F., Demmel, J., Donato, J.,
    Dongarra, J., Eijkhout, V., Pozo, R., Romine, C. & Van der Vorst, H.
    (1994).
    Templates for the solution of linear systems:
    building blocks for iterative methods
    (Vol. 43). Siam.

See also: https://en.wikipedia.org/wiki/Biconjugate_gradient_stabilized_method

Tests have shown that PBiCGStab with the DILU preconditioner is more
robust, reliable and shows faster convergence (~2x) than PBiCG with
DILU, in particular in parallel where PBiCG occasionally diverges.

This remarkable improvement over PBiCG prompted the update of all
tutorial cases currently using PBiCG to use PBiCGStab instead.  If any
issues arise with this update please report on Mantis: http://bugs.openfoam.org
 2016-09-05 11:46:42 +01:00
Henry Weller
fec5c063f5 polyMesh: clear cellTree if mesh moves 
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2235
 2016-09-04 21:16:55 +01:00
Henry Weller
77152f3f10 polyBoundaryMesh: Remove patchGroups which clash with patch names 
This allows freedom in the naming of patches when patchGroup-based
boundary specification is not used.

Patch contributed by Mattijs Janssens
 2016-09-04 10:35:19 +01:00
Henry Weller
dbe30eaef7 decomposePar: corrected decomposeParDict read using -region option 
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2227
 2016-09-03 20:54:16 +01:00
Henry Weller
5507dd7868 EulerCoordinateRotation,STARCDCoordinateRotation: Corrected typo 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2225
 2016-09-03 16:46:01 +01:00
Henry Weller
582f59c4cb Revert "polyBoundaryMesh::groupPatchIDs(): Make name clash between patch and group name fatal" 
This reverts commit 12ee017901.
 2016-08-26 11:44:56 +01:00
Henry Weller
12ee017901 polyBoundaryMesh::groupPatchIDs(): Make name clash between patch and group name fatal 
If this clash is allowed boundary conditions set by wildcards are
processed incorrectly.
 2016-08-25 16:42:08 +01:00
Henry Weller
71a646e63c src/Pstream: Added Allwclean consistent with the Allwmake 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2218
 2016-08-25 08:25:12 +01:00
Henry Weller
b37269d481 functionObjects: Improved handling of multi-file indexing and code style 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2216
 2016-08-24 19:34:00 +01:00
Henry Weller
f64624924e forceCoeffs: Removed duplicate header writing 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2216
 2016-08-24 16:01:29 +01:00
Henry Weller
73eee8e542 functionObjects::forces: Corrected file names when using the 'binData' option 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2214
 2016-08-24 11:24:27 +01:00
Henry Weller
8396a0faf2 functionObjects::volRegion: Cache integral properties for writeFileHeader 2016-08-24 09:32:34 +01:00
Henry Weller
68f57d3126 lagrangian::Analytical: improved analytical integration for the U-equation 
Patch contributed by Timo Niemi
In response to bug-report http://bugs.openfoam.org/view.php?id=2199
 2016-08-23 22:03:24 +01:00
Henry Weller
9354748814 src/parallel/decompose: Remove dependency on "SCOTCH_ROOT" and repair "decompose/Allwclean" 
Patch contributed by Bruno Santos
Resolves patch request http://bugs.openfoam.org/view.php?id=2212
 2016-08-23 21:53:35 +01:00
Henry Weller
b74d95b2a9 Corrected documentation in classes derived from temperatureCoupleBase 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2207
 2016-08-22 14:31:40 +01:00
Henry Weller
d245a7e485 septernion: Correct quaternion normalization after averaging 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2203
 2016-08-19 20:32:30 +01:00
Henry Weller
3744137dc5 /primitives/triad: Initialize array to avoid warning from icpc 2016-08-18 11:22:15 +01:00
Henry Weller
98ba05e02e ODESolvers::adaptiveSolver: Changed functions which need not be to non-virtual 
Resolves warnings from clang
 2016-08-18 10:36:52 +01:00
Henry Weller
e8675e7088 functionObjects::writeObjects: Corrected namespace for the definition of the NamedEnum 
Resolves compilation failure with clang
 2016-08-18 10:36:04 +01:00
Henry Weller
7a674dbc07 epsilonWallFunction, omegaWallFunction: Removed unused variabl 2016-08-18 08:23:54 +01:00
Henry Weller
628d86e575 multivariateScheme: Correct local typedef name 2016-08-17 23:04:00 +01:00
Henry Weller
68ebfd83c7 Update header 2016-08-17 23:03:49 +01:00
Henry Weller
39c241689e primitives/hashes/SHA1: undef macros 2016-08-17 23:03:27 +01:00
Henry Weller
4669fa03a1 sigWriteNow, sigStopAtWriteNow: Change runTimePtr_ to static member 2016-08-17 23:02:58 +01:00
Henry Weller
15621678fa fvDOM radiation model: Removed unreliable 'cacheDiv' option 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2182
 2016-08-17 17:12:20 +01:00
Henry Weller
16804b9d6f functionObjects::writeObjects: improved code and docs 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2090
 2016-08-17 14:41:42 +01:00
Henry Weller
f6acf86a5e viscosityModels::Casson: Added example specification for blood 
Contributed by Sergey Sindeev
 2016-08-17 13:46:46 +01:00
Henry Weller
12edcc8bad viscosityModels::Casson: Updated constructor to avoid the need to specify the dimensions of the coefficients 2016-08-17 13:45:18 +01:00
Henry Weller
1ba4a19d96 ODESolvers: Updated references to APA style 2016-08-17 10:27:15 +01:00
Henry Weller
ab205d2e94 viscosityModels::Casson: New viscosity model 
Description
    An incompressible Casson non-Newtonian viscosity model.

    References:
    \verbatim
        Casson, N. (1959).
        Rheology of disperse systems.
        In Proceedings of a Conference Organized by the
        British Society of Rheology.
        Pergamon Press, New York.

        Fournier, R. L. (2011).
        Basic transport phenomena in biomedical engineering.
        CRC Press.
    \endverbatim

Contributed by Sergey Sindeev
 2016-08-17 09:38:17 +01:00
Henry Weller
4e0d45e821 viscosityModels: State virtual functions are virtual also in the derived classes 2016-08-17 09:37:37 +01:00
Henry Weller
1c1791bb2a surfacePatch.C: Corrected formatting 2016-08-17 08:08:21 +01:00
Henry Weller
7238bd1016 functionObjects::writeObjects: Added option "writeOption" 
Description
    Allows specification of different writing frequency of objects registered
    to the database.

    It has similar functionality as the main time database through the
    \c writeControl setting:
      - timeStep
      - writeTime
      - adjustableRunTime
      - runTime
      - clockTime
      - cpuTime

    It also has the ability to write the selected objects that were defined
    with the respective write mode for the requested \c writeOption, namely:
      - \c autoWrite - objects set to write at output time
      - \c noWrite   - objects set to not write by default
      - \c anyWrite  - any option of the previous two

    Example of function object specification:
    \verbatim
    writeObjects1
    {
        type        writeObjects;
        libs        ("libutilityFunctionObjects.so");
        ...
        objects     (obj1 obj2);
        writeOption anyWrite;
    }
    \endverbatim

Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2090
 2016-08-16 23:41:22 +01:00
Henry Weller
fb22ab0b5f fvMesh,dynamicRefineFvMesh: Rename writeObjects -> writeObject for consistency with regIOobject 2016-08-16 23:40:27 +01:00
Henry Weller
f61ff85e7c dlLibraryTable: Add support for library path expansion 
Patch contributed by Mattijs Janssens
Resolves patch request http://bugs.openfoam.org/view.php?id=2195
 2016-08-16 16:12:19 +01:00