Commit graph

176 commits

Author SHA1 Message Date
Henry Weller
9fc0987fbb foamDebugSwitches: Updated for changes in functionObjects 2016-05-06 17:41:56 +01:00
Henry Weller
b72b9dcf88 primitives/direction: Changed from "char" to "int8_t" and added IO operators
to avoid problems when writing "nComponents"
2016-05-06 17:40:49 +01:00
Henry Weller
28c753f52e foamToVTK: Use UPtrList rather than PtrList 2016-05-06 14:11:38 +01:00
Henry Weller
dca3d758cd foamToVTK: Separated into the library libfoamToVTK and the utility foamToVTK 2016-05-04 15:16:33 +01:00
Henry Weller
52e79b4703 functionObjects: Updated docs 2016-05-04 08:51:39 +01:00
Henry Weller
3cd9b4f5d7 Change field loop index from "fieldI" to "fieldi" 2016-05-02 18:20:48 +01:00
Henry Weller
f83975a701 functionObjects: Moved into the functionObjects namespace and rationalized and simplified failable construction
Rather than requiring each functionObject to handle failed construction
internally (using the active_ flag) the static member function "viable"
is provided which returns true if construction of the functionObject is
likely to be successful.  Failed construction is then handled by the
wrapper-class which constructs the functionObject,
e.g. "OutputFilterFunctionObject".
2016-05-02 16:28:24 +01:00
Henry Weller
4da46e7cd9 Updated headers 2016-04-30 21:53:19 +01:00
Henry Weller
fe43b80536 GeometricField: Renamed internalField() -> primitiveField() and dimensionedInternalField() -> internalField()
These new names are more consistent and logical because:

primitiveField():
primitiveFieldRef():
    Provides low-level access to the Field<Type> (primitive field)
    without dimension or mesh-consistency checking.  This should only be
    used in the low-level functions where dimensional consistency is
    ensured by careful programming and computational efficiency is
    paramount.

internalField():
internalFieldRef():
    Provides access to the DimensionedField<Type, GeoMesh> of values on
    the internal mesh-type for which the GeometricField is defined and
    supports dimension and checking and mesh-consistency checking.
2016-04-30 21:40:09 +01:00
Henry Weller
68fb9a2bf9 GeometricField::dimensionedInteralFieldRef() -> GeometricField::ref()
In order to simplify expressions involving dimensioned internal field it
is preferable to use a simpler access convention.  Given that
GeometricField is derived from DimensionedField it is simply a matter of
de-referencing this underlying type unlike the boundary field which is
peripheral information.  For consistency with the new convention in
"tmp"  "dimensionedInteralFieldRef()" has been renamed "ref()".
2016-04-30 18:43:51 +01:00
Henry Weller
e1e996746b GeometricField::internalField() -> GeometricField::internalFieldRef()
Non-const access to the internal field now obtained from a specifically
named access function consistent with the new names for non-canst access
to the boundary field boundaryFieldRef() and dimensioned internal field
dimensionedInternalFieldRef().

See also commit a4e2afa4b3
2016-04-30 14:25:21 +01:00
Henry Weller
7155ef61ae functionObjectFile: Separated into functionObjectFile and functionObjectFiles
functionObjectFile provides basic directory, file and formatting functions
functionObjectFiles provides multi-file cache
2016-04-30 09:18:42 +01:00
Henry Weller
0a01f70653 Remove .internalField() clutter for const-access to the internal field 2016-04-28 12:37:31 +01:00
Henry Weller
75ea76187b GeometricField::GeometricBoundaryField -> GeometricField::Boundary
When the GeometricBoundaryField template class was originally written it
was a separate class in the Foam namespace rather than a sub-class of
GeometricField as it is now.  Without loss of clarity and simplifying
code which access the boundary field of GeometricFields it is better
that GeometricBoundaryField be renamed Boundary for consistency with the
new naming convention for the type of the dimensioned internal field:
Internal, see commit a25a449c9e

This is a very simple text substitution change which can be applied to
any code which compiles with the OpenFOAM-dev libraries.
2016-04-28 07:22:02 +01:00
Henry Weller
a25a449c9e GeometricField: Rationalized and simplified access to the dimensioned internal field
Given that the type of the dimensioned internal field is encapsulated in
the GeometricField class the name need not include "Field"; the type
name is "Internal" so

volScalarField::DimensionedInternalField -> volScalarField::Internal

In addition to the ".dimensionedInternalField()" access function the
simpler "()" de-reference operator is also provided to greatly simplify
FV equation source term expressions which need not evaluate boundary
conditions.  To demonstrate this kEpsilon.C has been updated to use
dimensioned internal field expressions in the k and epsilon equation
source terms.
2016-04-27 21:32:45 +01:00
Henry Weller
cb9732204d Replaced StaticAssert with the C++11 equivalent static_assert 2016-04-26 20:44:55 +01:00
Henry Weller
6fd4ce6cc3 Revert "src/postProcessing/functionObjects/field/Make/files: Corrected"
This reverts commit 73fe45cd27.
2016-04-26 20:33:45 +01:00
Henry Weller
73fe45cd27 src/postProcessing/functionObjects/field/Make/files: Corrected 2016-04-26 20:31:58 +01:00
Henry Weller
97f473ff0f GeometricField::dimensionedInternalField() -> GeometricField::dimensionedInternalFieldRef()
See also commit a4e2afa4b3
2016-04-26 16:29:43 +01:00
Henry Weller
a8bf4be58a Standardized cell, patch, face and processor loop index names 2016-04-25 12:00:53 +01:00
Henry Weller
8c4f6b8fcb Standardized cell, patch and face loop index names 2016-04-25 10:28:32 +01:00
Henry Weller
6a27f7af46 boundaryField() -> boundaryFieldRef() 2016-04-24 22:07:37 +01:00
Henry Weller
f33b40c202 foamCalcFunctions: Avoid the inclusion of fvCFD.H 2016-04-22 14:21:50 +01:00
Henry Weller
0da5b0f989 Updated headers 2016-04-21 21:07:28 +01:00
Henry Weller
d327a3f431 utilities/mesh/manipulation: Rationalized "End" message 2016-04-21 21:06:45 +01:00
Henry Weller
1c2c1d83e7 transformPoints: Added "End" message
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=2059
2016-04-21 21:05:47 +01:00
Henry Weller
287603474a vector::zero -> Zero 2016-04-16 18:34:41 +01:00
Henry Weller
09ba40bf26 Updated header 2016-04-04 13:53:51 +01:00
Henry Weller
3358c056e6 surfaceMeshConvert: Reinstated missing error messages 2016-04-04 13:53:20 +01:00
Henry Weller
94e9b05edd applications/.*/Allwmake: Updated to support "stop on 1st error"
Patch contributed by Bruno Santos
Resolved bug-report http://www.openfoam.org/mantisbt/view.php?id=2042
2016-04-04 09:03:40 +01:00
Henry Weller
ac71f86574 UList: Rationalize assignment (shallow-copy vs deep-copy)
//- Disallow default shallow-copy assignment
    //
    //  Assignment of UList<T> may need to be either shallow (copy pointer)
    //  or deep (copy elements) depending on context or the particular type
    //  of list derived from UList and it is confusing and prone to error
    //  for the default assignment to be either.  The solution is to
    //  disallow default assignment and provide separate 'shallowCopy' and
    //  'deepCopy' member functions.
    void operator=(const UList<T>&) = delete;

    //- Copy the pointer held by the given UList.
    inline void shallowCopy(const UList<T>&);

    //- Copy elements of the given UList.
    void deepCopy(const UList<T>&);
2016-04-03 10:26:05 +01:00
Henry Weller
56668b2406 Pstream: optimisation of data exchange
Contributed by Mattijs Janssens.

1. Any non-blocking data exchange needs to know in advance the sizes to
   receive so it can size the buffer.  For "halo" exchanges this is not
   a problem since the sizes are known in advance but or all other data
   exchanges these sizes need to be exchanged in advance.

   This was previously done by having all processors send the sizes of data to
   send to the master and send it back such that all processors
   - had the same information
   - all could work out who was sending what to where and hence what needed to
     be received.

   This is now changed such that we only send the size to the
   destination processor (instead of to all as previously). This means
   that
   - the list of sizes to send is now of size nProcs v.s. nProcs*nProcs before
   - we cut out the route to the master and back by using a native MPI
     call

   It causes a small change to the API of exchange and PstreamBuffers -
   they now return the sizes of the local buffers only (a labelList) and
   not the sizes of the buffers on all processors (labelListList)

2. Reversing the order of the way in which the sending is done when
   scattering information from the master processor to the other
   processors. This is done in a tree like fashion. Each processor has a
   set of processors to receive from/ send to. When receiving it will
   first receive from the processors with the least amount of
   sub-processors (i.e. the ones which return first). When sending it
   needs to do the opposite: start sending to the processor with the
   most amount of sub-tree since this is the critical path.
2016-04-02 18:32:11 +01:00
Henry Weller
fa8929df6d Use Zero rather than pTraits<Type>::zero unless a static typed '0' is required 2016-03-22 17:46:52 +00:00
Henry Weller
44c73bfbe1 Made all template declarations consistent using 'class' rather than 'typename' 2016-03-22 15:02:55 +00:00
Henry Weller
055a113f10 SquareMatrix, SymmetricSquareMatrix: Changed the constructor from size to require only n
This avoids the need to check that the m and n dimensions are the same.
2016-03-22 14:13:48 +00:00
Henry Weller
64d256f79e etc/config.sh/CGAL: updated
Patch contributed by Bruno Santos:
 - "etc/config.sh/CGAL":
   - Indented the contents of the recently added if block.
   - Added comment about using system versions.
   - Library paths are now only added if the respective version is not "boost-system" and "cgal-system".

 - "src/renumber/Allwmake":
   It now relies on the previous file to get the version for
   Boost (the same way as in "makeCGAL"). This is so that it will also
   build "SloanRenumber" if "boost_version" is set to "boost-system".

 - "applications/utilities/mesh/generation/Allwmake":
   It now also relies on the script "config.sh/CGAL" to get the
   version for CGAL. If "cgal_version" is set to "cgal-system", it
   will now also build "foamy*Mesh" utilities and respective
   libraries.

Resolves report http://www.openfoam.org/mantisbt/view.php?id=1232
2016-03-22 07:58:38 +00:00
Henry Weller
c13421b10a Matrix: Added (i, j) addressing to allow support for addressing blocks of the matrix
This change brings OpenFOAM into line with the standard matrix
addressing in other C++ libraries for better interoperability.
2016-03-20 19:44:29 +00:00
Henry Weller
04e8de2cf0 transformPoints, surfaceTransformPoints: Updated quaternion construction from Euler-angles
Resolves bug-report http://www.openfoam.org/mantisbt/view.php?id=2024
2016-03-14 16:40:35 +00:00
Henry Weller
7037737d03 Updated Doxygen documentation and files
Contributed by Bruno Santos
Resolves patch report http://www.openfoam.org/mantisbt/view.php?id=2023

Update online documentation http://openfoam.github.io/Documentation-dev/html/
2016-03-14 11:00:24 +00:00
Henry Weller
499c221df4 Sprucing up the tutorials folder and adding -dict to "collapseEdges"
Patch provided by Bruno Santos
Resolves patch application request http://www.openfoam.org/mantisbt/view.php?id=2015
2016-03-06 19:06:44 +00:00
Henry Weller
898693713c Rationalize the autoMesh library: autoHexMesh -> snappyHexMesh
autoRefine -> snappyRefine
autoLayer -> snappyLayer
autoSnap -> snappySnap
2016-03-01 16:21:31 +00:00
Henry Weller
8380044966 Rationalize the autoMesh library: autoMesh -> snappyHexMesh 2016-03-01 16:01:42 +00:00
Henry Weller
5f729820a1 src/OpenFOAM: Moved function documentation comments into .H files and removed duplicates 2016-03-01 12:29:01 +00:00
Henry Weller
c544bec896 Removed duplicate, inconsistent and spurious comments in .C files 2016-02-29 18:33:54 +00:00
Henry Weller
99c000fc94 Rationalized the indentation of C-preprocessor directives 2016-02-29 15:42:03 +00:00
Henry Weller
7859083246 OpenFOAM: Updated all libraries, solvers and utilities to use the new const-safe tmp
The deprecated non-const tmp functionality is now on the compiler switch
NON_CONST_TMP which can be enabled by adding -DNON_CONST_TMP to EXE_INC
in the Make/options file.  However, it is recommended to upgrade all
code to the new safer tmp by using the '.ref()' member function rather
than the non-const '()' dereference operator when non-const access to
the temporary object is required.

Please report any problems on Mantis.

Henry G. Weller
CFD Direct.
2016-02-26 17:31:28 +00:00
Henry Weller
e22f1b3514 refineMesh: Added customizable direction fields to multiDirRefinement
Contribution provided by Bruno Santos
Resolves feature request http://www.openfoam.org/mantisbt/view.php?id=2004
2016-02-22 17:06:18 +00:00
Henry Weller
5552674fc7 surfaceCoarsen: Changed List<::... to List< ::... for gcc-4.5 2016-02-21 09:03:39 +00:00
Henry Weller
7d192447f0 Boundary conditions: Added extrapolatedCalculatedFvPatchField
To be used instead of zeroGradientFvPatchField for temporary fields for
which zero-gradient extrapolation is use to evaluate the boundary field
but avoiding fields derived from temporary field using field algebra
inheriting the zeroGradient boundary condition by the reuse of the
temporary field storage.

zeroGradientFvPatchField should not be used as the default patch field
for any temporary fields and should be avoided for non-temporary fields
except where it is clearly appropriate;
extrapolatedCalculatedFvPatchField and calculatedFvPatchField are
generally more suitable defaults depending on the manner in which the
boundary values are specified or evaluated.

The entire OpenFOAM-dev code-base has been updated following the above
recommendations.

Henry G. Weller
CFD Direct
2016-02-20 22:44:37 +00:00
Henry Weller
fa0656c358 scripts: Reformat with consistent section separators 2016-02-15 18:30:24 +00:00