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1116 commits

Author SHA1 Message Date
Henry Weller
3d754f4a12 PBiCGStab: Corrected to support processorAgglomerator 
Patch contributed by Battijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2383
 2016-12-09 17:00:50 +00:00
Henry Weller
7209ceb306 metisDecomp: Corrected return from metisDecomp::decompose 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2370
 2016-12-03 19:27:24 +00:00
Henry Weller
daa4d54a49 processorMeshes::read destruct before de-register 
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2368
 2016-12-01 22:06:35 +00:00
Henry Weller
0b3c8e6fb4 meshToMesh0: fixed segmentation fault 
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2363
 2016-12-01 19:57:00 +00:00
Henry Weller
0e18bbaa12 functionObjects::grad: Avoid cache conflict with 'postProcess' utility 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2350
 2016-12-01 15:53:38 +00:00
Henry Weller
422f1770e0 tensor::eigenValues: Test the magnitude of 'QQ' before dividing by it. 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2351
 2016-11-26 20:53:19 +00:00
Henry Weller
fcb789a267 functionObject.H: Updated documentation 
Patch contributed by Bruno Santos
Resolves patch request http://bugs.openfoam.org/view.php?id=2355
 2016-11-26 19:47:45 +00:00
Henry Weller
769940a61b functionObjects::yPlus: Removed the AUTO_WRITE option on yPlus 
Writing is controlled directly by the functionObject
 2016-11-26 17:35:17 +00:00
Henry Weller
35f4d2da07 functionObjects::fieldExpression: Correct and improve warning messages 
postProcess -func MachNo

previously generated the warning

Executing functionObjects
--> FOAM Warning :     functionObjects::MachNo MachNo cannot find required field U

which is incorrect; the field 'U' is available but the
thermophysicalProperties is not.  Now 'postProcess' generates the
warning:

Executing functionObjects
--> FOAM Warning :     functionObjects::MachNo MachNo cannot find required object thermophysicalProperties of type fluidThermo
--> FOAM Warning :     functionObjects::MachNo MachNo failed to execute.

Resolves bug-report http://bugs.openfoam.org/view.php?id=2352
 2016-11-25 21:49:56 +00:00
Henry Weller
acc2a7707e functionObjects::yPlus: Call read() in constructor to set base-class controls 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2320
 2016-11-06 10:33:18 +00:00
Henry Weller
c4b8d5e443 kOmegaSSTBase: Corrected read() to re-read the base-class settings 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2318
 2016-11-05 23:27:19 +00:00
Henry Weller
61195404f7 Cloud: Added 'td.switchProcessor' check to processor transfer logic 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2315
 2016-11-05 21:20:18 +00:00
Henry Weller
d23f7d0fd1 movingWallVelocityFvPatchVectorField: Removed incorrect documentation concerning MRF 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2287
 2016-10-07 17:39:30 +01:00
Henry Weller
7dce08191e fvOptions: Corrected docs: 'fieldName' -> 'fields' 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2273
 2016-09-28 19:40:47 +01:00
Henry Weller
7dbca43064 PatchToPatchInterpolate: Update to use the tmp ref() non-const access function 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2248
 2016-09-16 14:48:31 +01:00
Henry Weller
de29a3309e rigidBodyMotion: Change the transform averaging to use approximate inverse-distance weighting 
Now works correctly for an arbitrary number of bodies
Resolves bug-report http://bugs.openfoam.org/view.php?id=2211
 2016-09-15 14:36:20 +01:00
Henry Weller
1ca4bbf1d2 PBiCGStab: New preconditioned bi-conjugate gradient stabilized solver for asymmetric lduMatrices 
using a run-time selectable preconditioner

References:
    Van der Vorst, H. A. (1992).
    Bi-CGSTAB: A fast and smoothly converging variant of Bi-CG
    for the solution of nonsymmetric linear systems.
    SIAM Journal on scientific and Statistical Computing, 13(2), 631-644.

    Barrett, R., Berry, M. W., Chan, T. F., Demmel, J., Donato, J.,
    Dongarra, J., Eijkhout, V., Pozo, R., Romine, C. & Van der Vorst, H.
    (1994).
    Templates for the solution of linear systems:
    building blocks for iterative methods
    (Vol. 43). Siam.

See also: https://en.wikipedia.org/wiki/Biconjugate_gradient_stabilized_method

Tests have shown that PBiCGStab with the DILU preconditioner is more
robust, reliable and shows faster convergence (~2x) than PBiCG with
DILU, in particular in parallel where PBiCG occasionally diverges.
 2016-09-12 15:19:24 +01:00
Henry Weller
168b29e2cf functionObjectList::readFunctionObject: Added support for region specification 
Now the postProcess utility '-region' option works correctly, e.g. for
the chtMultiRegionSimpleFoam/heatExchanger case

postProcess -region air -func "mag(U)"

calculates 'mag(U)' for all the time steps in region 'air'.
 2016-09-09 11:24:12 +01:00
Henry Weller
5c32111a21 decomposePar: corrected decomposeParDict read using -region option 
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2227
 2016-09-03 20:50:40 +01:00
Henry Weller
e5670539f8 forceCoeffs: Removed duplicate header writing 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2216
 2016-08-24 16:02:53 +01:00
Henry Weller
24690df17f functionObjects::forces: Corrected file names when using the 'binData' option 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2214
 2016-08-24 11:23:02 +01:00
Henry Weller
a13e6aef99 Corrected documentation in classes derived from temperatureCoupleBase 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2207
 2016-08-22 14:28:19 +01:00
Henry Weller
0fb712a4f1 septernion: Correct quaternion normalization after averaging 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2203
 2016-08-19 20:34:13 +01:00
Henry Weller
7dfa780c48 ORourkeCollision: Corrected probability test 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2097
 2016-08-04 10:05:22 +01:00
Henry Weller
57de5138dd Make/options: Removed duplicate entries 
Thanks to Bruno Santos for providing the script to check the files
Resolves bug-report http://bugs.openfoam.org/view.php?id=2169
 2016-08-01 20:57:02 +01:00
Henry Weller
5a6fdc1dad fvAgglomerationMethods/Allwmake: Removed reference to Scotch 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2168
 2016-08-01 17:06:14 +01:00
Henry Weller
cf54a3dc2a meshToMeshTemplates: Updated non-const access to the source patch field 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2165
 2016-08-01 14:26:30 +01:00
Henry Weller
62dd439d9c CrankNicolsonDdtScheme: Corrected handling of the boundary field to avoid premature reset of the time-index 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2162
 2016-07-29 17:53:28 +01:00
Henry Weller
6a92285b9b fvMatrixSolve: Corrected ref() access to field 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2163
 2016-07-28 17:57:06 +01:00
Henry Weller
5a27ec701c forces: Updated reading of 'nu' 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2158
 2016-07-22 09:54:58 +01:00
Henry Weller
d5da93c477 postProcess: Added call to functionObject::end() at end of time-loop 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2148
 2016-07-19 12:22:49 +01:00
Henry Weller
7bffff8587 ODESolvers::seulex: Corrected 'expo' 2016-07-12 20:06:06 +01:00
Henry Weller
90e2f8d87b functionObjects::systemCall: Updated documentation 2016-07-09 21:55:15 +01:00
Henry Weller
da871b3bc5 functionObjects: Updated documentation 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2138
 2016-07-03 23:17:54 +01:00
Henry Weller
a70846e229 src/OpenFOAM/primitives/ints: Further tweaks 
Resolved additional bug-report http://bugs.openfoam.org/view.php?id=2137
 2016-07-01 14:51:38 +01:00
Henry Weller
eb17a6f189 vtkUnstructuredReader: corrected prism point ordering 
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=1885
 2016-07-01 14:48:34 +01:00
Henry Weller
c3eea1df03 src/OpenFOAM/primitives/ints: Corrected MIN and MAX for uints 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2137
 2016-07-01 10:44:05 +01:00
Henry Weller
4bb9e66c24 SloanRenumber: link with libboost_system.so rather than libboost_thread.so 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2135
 2016-06-30 12:00:15 +01:00
Henry Weller
90f400ead5 fvcD2dt2: Updated non-const dereferencing to use '.ref()' 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2133
 2016-06-29 21:54:19 +01:00
Henry Weller
a42ba9b50b Updated version to OpenFOAM-4.x 2016-06-28 11:59:45 +01:00
Henry Weller
c462ffac10 Created OpenFOAM-4.0 from OpenFOAM-dev 2016-06-22 11:19:35 +01:00
Henry Weller
d67a1df92e mapFieldsPar: updated to enable mapping from source patches (instead of recreating) 
- patchFields now get mapped (instead of created)
  - with -consistent it now maps all patches except for processor ones (they are
    the only ones that are processor-local)
  - all constraint patches get evaluated after mapping to bring them up to date.

Patch contributed by Mattijs Janssens
 2016-06-21 14:16:18 +01:00
Henry Weller
e39282627b uLabel: Removed unnecessary checks for < 0 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2128
 2016-06-21 11:05:04 +01:00
Henry Weller
f3f9e55ed2 Corrected documentation for Doxygen 2016-06-21 11:04:34 +01:00
Henry Weller
cf89a3094a Updated and simplified the Doxygen documentation 2016-06-20 21:20:28 +01:00
Henry Weller
017903cb85 Remove/replace deprecated functions and classes 2016-06-20 09:39:02 +01:00
Henry Weller
9f67acdc53 Updated header documentation processed by Doxygen 2016-06-19 21:23:54 +01:00
Henry Weller
62e340f56c fvPatchFields/derived/flowRateInletVelocity: Write the extrapolateProfile switch 2016-06-17 20:27:31 +01:00
Henry Weller
1ef6ed3b9f ODESolvers::seulex: Handle possible overflow in the calculation of the dy norm 2016-06-17 18:59:28 +01:00
Henry Weller
8a5304edf6 Doxygen documentation: Standardized the 'See also' heading 2016-06-17 17:31:34 +01:00